Multiple sequence alignment - TraesCS6B01G317000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G317000 chr6B 100.000 2485 0 0 1 2485 564719300 564721784 0.000000e+00 4590.0
1 TraesCS6B01G317000 chr6B 93.641 1148 62 4 794 1938 527622779 527621640 0.000000e+00 1705.0
2 TraesCS6B01G317000 chr6B 91.274 424 29 3 427 850 115236702 115236287 2.770000e-159 571.0
3 TraesCS6B01G317000 chr3B 94.836 2072 89 8 416 2485 18541786 18543841 0.000000e+00 3217.0
4 TraesCS6B01G317000 chr3B 93.421 1520 88 7 427 1939 644434853 644433339 0.000000e+00 2242.0
5 TraesCS6B01G317000 chr3B 96.288 431 16 0 1 431 505806833 505807263 0.000000e+00 708.0
6 TraesCS6B01G317000 chr3A 94.095 2066 102 10 427 2485 714029556 714027504 0.000000e+00 3121.0
7 TraesCS6B01G317000 chr7A 93.058 2060 113 7 427 2485 71731329 71733359 0.000000e+00 2985.0
8 TraesCS6B01G317000 chr2A 94.435 1689 78 5 810 2485 617004272 617005957 0.000000e+00 2584.0
9 TraesCS6B01G317000 chr2A 95.848 1156 46 2 1254 2408 647179026 647180180 0.000000e+00 1868.0
10 TraesCS6B01G317000 chr5B 91.667 1524 96 11 426 1939 468307856 468306354 0.000000e+00 2082.0
11 TraesCS6B01G317000 chr5B 96.288 431 16 0 1 431 662230649 662231079 0.000000e+00 708.0
12 TraesCS6B01G317000 chr1A 95.502 1156 51 1 1254 2408 401548688 401547533 0.000000e+00 1845.0
13 TraesCS6B01G317000 chr1A 88.448 554 52 9 986 1529 583604890 583605441 0.000000e+00 658.0
14 TraesCS6B01G317000 chr1A 93.384 393 24 2 427 818 410203301 410203692 4.610000e-162 580.0
15 TraesCS6B01G317000 chr1A 84.444 90 11 3 788 877 410203690 410203776 4.400000e-13 86.1
16 TraesCS6B01G317000 chr5A 95.095 1162 48 5 1254 2408 27125971 27124812 0.000000e+00 1821.0
17 TraesCS6B01G317000 chr5A 97.053 509 15 0 1554 2062 420633184 420632676 0.000000e+00 857.0
18 TraesCS6B01G317000 chr4A 94.017 1170 53 6 1254 2408 550328060 550326893 0.000000e+00 1757.0
19 TraesCS6B01G317000 chr7B 96.752 431 14 0 1 431 584288085 584287655 0.000000e+00 719.0
20 TraesCS6B01G317000 chr7B 96.056 431 17 0 1 431 711240758 711240328 0.000000e+00 702.0
21 TraesCS6B01G317000 chr1B 96.520 431 15 0 1 431 53351392 53351822 0.000000e+00 713.0
22 TraesCS6B01G317000 chr1B 96.288 431 16 0 1 431 20641192 20641622 0.000000e+00 708.0
23 TraesCS6B01G317000 chr1B 96.056 431 17 0 1 431 108527064 108526634 0.000000e+00 702.0
24 TraesCS6B01G317000 chr1B 96.056 431 17 0 1 431 109664184 109663754 0.000000e+00 702.0
25 TraesCS6B01G317000 chr1B 86.655 577 47 20 986 1533 676746695 676747270 1.630000e-171 612.0
26 TraesCS6B01G317000 chr4B 96.056 431 17 0 1 431 502796653 502797083 0.000000e+00 702.0
27 TraesCS6B01G317000 chr4B 92.035 452 34 2 426 875 627802730 627802279 3.490000e-178 634.0
28 TraesCS6B01G317000 chr2B 92.511 454 24 6 426 877 69470167 69469722 2.080000e-180 641.0
29 TraesCS6B01G317000 chr7D 94.949 396 18 2 427 821 503944578 503944184 9.760000e-174 619.0
30 TraesCS6B01G317000 chr7D 94.444 90 5 0 788 877 503944189 503944100 3.330000e-29 139.0
31 TraesCS6B01G317000 chr6D 87.356 435 32 9 1716 2143 178629977 178630395 6.220000e-131 477.0
32 TraesCS6B01G317000 chr5D 87.707 423 29 10 1716 2134 365074028 365073625 2.890000e-129 472.0
33 TraesCS6B01G317000 chr5D 93.333 90 6 0 788 877 394992040 394992129 1.550000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G317000 chr6B 564719300 564721784 2484 False 4590 4590 100.000 1 2485 1 chr6B.!!$F1 2484
1 TraesCS6B01G317000 chr6B 527621640 527622779 1139 True 1705 1705 93.641 794 1938 1 chr6B.!!$R2 1144
2 TraesCS6B01G317000 chr3B 18541786 18543841 2055 False 3217 3217 94.836 416 2485 1 chr3B.!!$F1 2069
3 TraesCS6B01G317000 chr3B 644433339 644434853 1514 True 2242 2242 93.421 427 1939 1 chr3B.!!$R1 1512
4 TraesCS6B01G317000 chr3A 714027504 714029556 2052 True 3121 3121 94.095 427 2485 1 chr3A.!!$R1 2058
5 TraesCS6B01G317000 chr7A 71731329 71733359 2030 False 2985 2985 93.058 427 2485 1 chr7A.!!$F1 2058
6 TraesCS6B01G317000 chr2A 617004272 617005957 1685 False 2584 2584 94.435 810 2485 1 chr2A.!!$F1 1675
7 TraesCS6B01G317000 chr2A 647179026 647180180 1154 False 1868 1868 95.848 1254 2408 1 chr2A.!!$F2 1154
8 TraesCS6B01G317000 chr5B 468306354 468307856 1502 True 2082 2082 91.667 426 1939 1 chr5B.!!$R1 1513
9 TraesCS6B01G317000 chr1A 401547533 401548688 1155 True 1845 1845 95.502 1254 2408 1 chr1A.!!$R1 1154
10 TraesCS6B01G317000 chr1A 583604890 583605441 551 False 658 658 88.448 986 1529 1 chr1A.!!$F1 543
11 TraesCS6B01G317000 chr5A 27124812 27125971 1159 True 1821 1821 95.095 1254 2408 1 chr5A.!!$R1 1154
12 TraesCS6B01G317000 chr5A 420632676 420633184 508 True 857 857 97.053 1554 2062 1 chr5A.!!$R2 508
13 TraesCS6B01G317000 chr4A 550326893 550328060 1167 True 1757 1757 94.017 1254 2408 1 chr4A.!!$R1 1154
14 TraesCS6B01G317000 chr1B 676746695 676747270 575 False 612 612 86.655 986 1533 1 chr1B.!!$F3 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 881 0.033504 GCACTTCTTCCGTGACCTCA 59.966 55.0 0.0 0.0 34.35 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2063 0.109597 CGTCTCAGTTTTGGCATGCC 60.11 55.0 30.54 30.54 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.384224 TGATTTTGAATCACTTGAGACATGC 58.616 36.000 0.00 0.00 0.00 4.06
25 26 5.771153 TTTTGAATCACTTGAGACATGCA 57.229 34.783 0.00 0.00 0.00 3.96
26 27 5.771153 TTTGAATCACTTGAGACATGCAA 57.229 34.783 0.00 0.00 0.00 4.08
27 28 5.771153 TTGAATCACTTGAGACATGCAAA 57.229 34.783 0.00 0.00 0.00 3.68
28 29 5.970317 TGAATCACTTGAGACATGCAAAT 57.030 34.783 0.00 0.00 0.00 2.32
29 30 5.946298 TGAATCACTTGAGACATGCAAATC 58.054 37.500 0.00 0.00 0.00 2.17
30 31 5.474189 TGAATCACTTGAGACATGCAAATCA 59.526 36.000 0.00 0.00 0.00 2.57
31 32 6.152154 TGAATCACTTGAGACATGCAAATCAT 59.848 34.615 0.00 0.00 35.31 2.45
32 33 7.337436 TGAATCACTTGAGACATGCAAATCATA 59.663 33.333 0.00 0.00 33.19 2.15
33 34 6.426980 TCACTTGAGACATGCAAATCATAC 57.573 37.500 0.00 0.00 33.19 2.39
34 35 5.355071 TCACTTGAGACATGCAAATCATACC 59.645 40.000 0.00 0.00 33.19 2.73
35 36 5.124297 CACTTGAGACATGCAAATCATACCA 59.876 40.000 0.00 0.00 33.19 3.25
36 37 5.124457 ACTTGAGACATGCAAATCATACCAC 59.876 40.000 0.00 0.00 33.19 4.16
37 38 4.587891 TGAGACATGCAAATCATACCACA 58.412 39.130 0.00 0.00 33.19 4.17
38 39 5.195185 TGAGACATGCAAATCATACCACAT 58.805 37.500 0.00 0.00 33.19 3.21
39 40 5.066764 TGAGACATGCAAATCATACCACATG 59.933 40.000 0.00 0.00 40.48 3.21
40 41 4.340097 AGACATGCAAATCATACCACATGG 59.660 41.667 0.00 0.00 39.30 3.66
41 42 3.385433 ACATGCAAATCATACCACATGGG 59.615 43.478 2.32 0.00 39.30 4.00
42 43 1.755959 TGCAAATCATACCACATGGGC 59.244 47.619 2.32 0.00 42.05 5.36
43 44 1.755959 GCAAATCATACCACATGGGCA 59.244 47.619 2.32 0.00 42.05 5.36
44 45 2.168106 GCAAATCATACCACATGGGCAA 59.832 45.455 2.32 0.00 42.05 4.52
45 46 3.738899 GCAAATCATACCACATGGGCAAG 60.739 47.826 2.32 0.00 42.05 4.01
46 47 3.668141 AATCATACCACATGGGCAAGA 57.332 42.857 2.32 0.00 42.05 3.02
47 48 3.889859 ATCATACCACATGGGCAAGAT 57.110 42.857 2.32 0.00 42.05 2.40
48 49 2.934887 TCATACCACATGGGCAAGATG 58.065 47.619 2.32 0.00 42.05 2.90
49 50 2.509131 TCATACCACATGGGCAAGATGA 59.491 45.455 2.32 0.00 42.05 2.92
50 51 2.418368 TACCACATGGGCAAGATGAC 57.582 50.000 2.32 0.00 42.05 3.06
51 52 0.700564 ACCACATGGGCAAGATGACT 59.299 50.000 2.32 0.00 42.05 3.41
52 53 1.076024 ACCACATGGGCAAGATGACTT 59.924 47.619 2.32 0.00 42.05 3.01
53 54 2.308570 ACCACATGGGCAAGATGACTTA 59.691 45.455 2.32 0.00 42.05 2.24
54 55 3.245229 ACCACATGGGCAAGATGACTTAA 60.245 43.478 2.32 0.00 42.05 1.85
55 56 3.763360 CCACATGGGCAAGATGACTTAAA 59.237 43.478 0.00 0.00 34.70 1.52
56 57 4.220382 CCACATGGGCAAGATGACTTAAAA 59.780 41.667 0.00 0.00 34.70 1.52
57 58 5.404946 CACATGGGCAAGATGACTTAAAAG 58.595 41.667 0.00 0.00 34.70 2.27
58 59 4.082026 ACATGGGCAAGATGACTTAAAAGC 60.082 41.667 0.00 0.00 34.70 3.51
59 60 2.825532 TGGGCAAGATGACTTAAAAGCC 59.174 45.455 0.00 0.00 39.32 4.35
60 61 3.092301 GGGCAAGATGACTTAAAAGCCT 58.908 45.455 0.00 0.00 39.69 4.58
61 62 3.129462 GGGCAAGATGACTTAAAAGCCTC 59.871 47.826 0.00 0.00 39.69 4.70
62 63 3.758554 GGCAAGATGACTTAAAAGCCTCA 59.241 43.478 0.00 0.00 38.00 3.86
63 64 4.400567 GGCAAGATGACTTAAAAGCCTCAT 59.599 41.667 0.00 0.00 38.00 2.90
64 65 5.105595 GGCAAGATGACTTAAAAGCCTCATT 60.106 40.000 0.00 0.00 38.00 2.57
65 66 6.393171 GCAAGATGACTTAAAAGCCTCATTT 58.607 36.000 0.00 0.00 34.70 2.32
66 67 6.870439 GCAAGATGACTTAAAAGCCTCATTTT 59.130 34.615 0.00 0.00 36.40 1.82
67 68 7.062722 GCAAGATGACTTAAAAGCCTCATTTTC 59.937 37.037 0.00 0.00 34.35 2.29
68 69 7.765695 AGATGACTTAAAAGCCTCATTTTCA 57.234 32.000 0.00 0.00 34.35 2.69
69 70 7.824672 AGATGACTTAAAAGCCTCATTTTCAG 58.175 34.615 0.00 0.00 34.35 3.02
70 71 6.959639 TGACTTAAAAGCCTCATTTTCAGT 57.040 33.333 0.00 0.00 38.61 3.41
71 72 8.635765 ATGACTTAAAAGCCTCATTTTCAGTA 57.364 30.769 0.25 0.00 36.96 2.74
72 73 8.458573 TGACTTAAAAGCCTCATTTTCAGTAA 57.541 30.769 0.25 0.00 36.96 2.24
73 74 8.567948 TGACTTAAAAGCCTCATTTTCAGTAAG 58.432 33.333 0.25 0.00 36.96 2.34
74 75 8.691661 ACTTAAAAGCCTCATTTTCAGTAAGA 57.308 30.769 0.00 0.00 35.75 2.10
75 76 9.301897 ACTTAAAAGCCTCATTTTCAGTAAGAT 57.698 29.630 0.00 0.00 35.75 2.40
76 77 9.565213 CTTAAAAGCCTCATTTTCAGTAAGATG 57.435 33.333 0.00 0.00 34.35 2.90
77 78 6.521151 AAAGCCTCATTTTCAGTAAGATGG 57.479 37.500 0.00 0.00 0.00 3.51
78 79 5.441718 AGCCTCATTTTCAGTAAGATGGA 57.558 39.130 0.00 0.00 0.00 3.41
79 80 5.819991 AGCCTCATTTTCAGTAAGATGGAA 58.180 37.500 0.00 0.00 0.00 3.53
80 81 5.649831 AGCCTCATTTTCAGTAAGATGGAAC 59.350 40.000 0.00 0.00 0.00 3.62
101 102 4.220533 CAAGAGAGCAACTTGTTGGAAG 57.779 45.455 14.30 0.00 39.57 3.46
102 103 3.567478 AGAGAGCAACTTGTTGGAAGT 57.433 42.857 14.30 0.00 0.00 3.01
103 104 4.689612 AGAGAGCAACTTGTTGGAAGTA 57.310 40.909 14.30 0.00 0.00 2.24
104 105 5.036117 AGAGAGCAACTTGTTGGAAGTAA 57.964 39.130 14.30 0.00 0.00 2.24
105 106 5.625150 AGAGAGCAACTTGTTGGAAGTAAT 58.375 37.500 14.30 0.00 0.00 1.89
106 107 6.769512 AGAGAGCAACTTGTTGGAAGTAATA 58.230 36.000 14.30 0.00 0.00 0.98
107 108 6.651225 AGAGAGCAACTTGTTGGAAGTAATAC 59.349 38.462 14.30 0.00 0.00 1.89
108 109 6.296026 AGAGCAACTTGTTGGAAGTAATACA 58.704 36.000 14.30 0.00 0.00 2.29
109 110 6.942576 AGAGCAACTTGTTGGAAGTAATACAT 59.057 34.615 14.30 0.00 0.00 2.29
110 111 7.448469 AGAGCAACTTGTTGGAAGTAATACATT 59.552 33.333 14.30 0.00 0.00 2.71
111 112 7.951591 AGCAACTTGTTGGAAGTAATACATTT 58.048 30.769 14.30 0.00 0.00 2.32
112 113 8.421002 AGCAACTTGTTGGAAGTAATACATTTT 58.579 29.630 14.30 0.00 0.00 1.82
113 114 8.487176 GCAACTTGTTGGAAGTAATACATTTTG 58.513 33.333 14.30 0.00 0.00 2.44
114 115 9.743057 CAACTTGTTGGAAGTAATACATTTTGA 57.257 29.630 5.65 0.00 0.00 2.69
116 117 9.912634 ACTTGTTGGAAGTAATACATTTTGATG 57.087 29.630 0.00 0.00 0.00 3.07
117 118 9.912634 CTTGTTGGAAGTAATACATTTTGATGT 57.087 29.630 0.00 0.00 38.49 3.06
118 119 9.689976 TTGTTGGAAGTAATACATTTTGATGTG 57.310 29.630 2.47 0.00 36.08 3.21
119 120 8.855110 TGTTGGAAGTAATACATTTTGATGTGT 58.145 29.630 2.47 0.00 36.08 3.72
120 121 9.128107 GTTGGAAGTAATACATTTTGATGTGTG 57.872 33.333 2.47 0.00 36.08 3.82
121 122 7.312154 TGGAAGTAATACATTTTGATGTGTGC 58.688 34.615 2.47 0.00 36.08 4.57
122 123 7.040132 TGGAAGTAATACATTTTGATGTGTGCA 60.040 33.333 2.47 0.00 36.08 4.57
123 124 7.812191 GGAAGTAATACATTTTGATGTGTGCAA 59.188 33.333 2.47 0.00 36.08 4.08
124 125 9.357652 GAAGTAATACATTTTGATGTGTGCAAT 57.642 29.630 2.47 0.00 36.08 3.56
125 126 8.915871 AGTAATACATTTTGATGTGTGCAATC 57.084 30.769 2.47 0.00 36.08 2.67
126 127 8.522003 AGTAATACATTTTGATGTGTGCAATCA 58.478 29.630 2.47 0.00 36.08 2.57
127 128 9.138062 GTAATACATTTTGATGTGTGCAATCAA 57.862 29.630 7.98 7.98 36.08 2.57
128 129 8.604640 AATACATTTTGATGTGTGCAATCAAA 57.395 26.923 17.19 17.19 41.02 2.69
129 130 8.780846 ATACATTTTGATGTGTGCAATCAAAT 57.219 26.923 20.27 11.70 41.90 2.32
130 131 6.893759 ACATTTTGATGTGTGCAATCAAATG 58.106 32.000 20.27 19.89 41.90 2.32
131 132 6.706716 ACATTTTGATGTGTGCAATCAAATGA 59.293 30.769 20.27 10.84 41.90 2.57
132 133 6.772770 TTTTGATGTGTGCAATCAAATGAG 57.227 33.333 20.27 0.00 41.90 2.90
133 134 5.456548 TTGATGTGTGCAATCAAATGAGT 57.543 34.783 9.36 0.00 32.11 3.41
134 135 4.800784 TGATGTGTGCAATCAAATGAGTG 58.199 39.130 6.50 6.50 42.43 3.51
135 136 4.278919 TGATGTGTGCAATCAAATGAGTGT 59.721 37.500 11.88 0.00 41.66 3.55
136 137 4.652421 TGTGTGCAATCAAATGAGTGTT 57.348 36.364 11.88 0.00 41.66 3.32
137 138 4.361420 TGTGTGCAATCAAATGAGTGTTG 58.639 39.130 11.88 2.48 41.66 3.33
138 139 4.097589 TGTGTGCAATCAAATGAGTGTTGA 59.902 37.500 11.88 0.00 41.66 3.18
139 140 4.678287 GTGTGCAATCAAATGAGTGTTGAG 59.322 41.667 11.88 0.00 41.66 3.02
140 141 4.232221 GTGCAATCAAATGAGTGTTGAGG 58.768 43.478 11.88 0.00 41.66 3.86
141 142 3.248266 GCAATCAAATGAGTGTTGAGGC 58.752 45.455 11.88 0.00 41.66 4.70
142 143 3.305539 GCAATCAAATGAGTGTTGAGGCA 60.306 43.478 11.88 0.00 41.66 4.75
143 144 4.232221 CAATCAAATGAGTGTTGAGGCAC 58.768 43.478 2.85 0.00 38.34 5.01
144 145 1.872952 TCAAATGAGTGTTGAGGCACG 59.127 47.619 0.00 0.00 43.61 5.34
145 146 0.593128 AAATGAGTGTTGAGGCACGC 59.407 50.000 0.00 0.00 43.61 5.34
146 147 2.503546 TGAGTGTTGAGGCACGCA 59.496 55.556 0.00 0.00 44.51 5.24
147 148 1.595109 TGAGTGTTGAGGCACGCAG 60.595 57.895 0.00 0.00 42.53 5.18
148 149 2.310327 TGAGTGTTGAGGCACGCAGT 62.310 55.000 0.00 0.00 42.53 4.40
165 166 5.918608 ACGCAGTGGATATCTTTATGTTCT 58.081 37.500 2.05 0.00 42.51 3.01
166 167 6.349300 ACGCAGTGGATATCTTTATGTTCTT 58.651 36.000 2.05 0.00 42.51 2.52
167 168 6.258727 ACGCAGTGGATATCTTTATGTTCTTG 59.741 38.462 2.05 0.00 42.51 3.02
168 169 6.433766 GCAGTGGATATCTTTATGTTCTTGC 58.566 40.000 2.05 0.00 0.00 4.01
169 170 6.261826 GCAGTGGATATCTTTATGTTCTTGCT 59.738 38.462 2.05 0.00 0.00 3.91
170 171 7.201767 GCAGTGGATATCTTTATGTTCTTGCTT 60.202 37.037 2.05 0.00 0.00 3.91
171 172 8.341173 CAGTGGATATCTTTATGTTCTTGCTTC 58.659 37.037 2.05 0.00 0.00 3.86
172 173 8.049117 AGTGGATATCTTTATGTTCTTGCTTCA 58.951 33.333 2.05 0.00 0.00 3.02
173 174 8.844244 GTGGATATCTTTATGTTCTTGCTTCAT 58.156 33.333 2.05 0.00 0.00 2.57
179 180 9.842775 ATCTTTATGTTCTTGCTTCATAGATGA 57.157 29.630 0.00 0.00 34.44 2.92
180 181 9.842775 TCTTTATGTTCTTGCTTCATAGATGAT 57.157 29.630 0.00 0.00 36.56 2.45
184 185 7.926674 TGTTCTTGCTTCATAGATGATTTGA 57.073 32.000 0.00 0.00 36.56 2.69
185 186 7.982224 TGTTCTTGCTTCATAGATGATTTGAG 58.018 34.615 0.00 0.00 36.56 3.02
186 187 7.609146 TGTTCTTGCTTCATAGATGATTTGAGT 59.391 33.333 0.00 0.00 36.56 3.41
187 188 9.102757 GTTCTTGCTTCATAGATGATTTGAGTA 57.897 33.333 0.00 0.00 36.56 2.59
188 189 8.883954 TCTTGCTTCATAGATGATTTGAGTAG 57.116 34.615 0.00 0.00 36.56 2.57
189 190 8.699130 TCTTGCTTCATAGATGATTTGAGTAGA 58.301 33.333 0.00 0.00 36.56 2.59
190 191 9.491675 CTTGCTTCATAGATGATTTGAGTAGAT 57.508 33.333 0.00 0.00 36.56 1.98
191 192 8.828688 TGCTTCATAGATGATTTGAGTAGATG 57.171 34.615 0.00 0.00 36.56 2.90
192 193 7.387122 TGCTTCATAGATGATTTGAGTAGATGC 59.613 37.037 0.00 0.00 36.56 3.91
193 194 7.603404 GCTTCATAGATGATTTGAGTAGATGCT 59.397 37.037 0.00 0.00 36.56 3.79
197 198 9.926158 CATAGATGATTTGAGTAGATGCTAAGT 57.074 33.333 0.00 0.00 0.00 2.24
231 232 9.903682 CTTGATGAAACACAAGTCTGAATTATT 57.096 29.630 0.00 0.00 38.72 1.40
232 233 9.681692 TTGATGAAACACAAGTCTGAATTATTG 57.318 29.630 0.00 0.00 0.00 1.90
233 234 9.065798 TGATGAAACACAAGTCTGAATTATTGA 57.934 29.630 5.85 0.00 0.00 2.57
234 235 9.897744 GATGAAACACAAGTCTGAATTATTGAA 57.102 29.630 5.85 0.00 0.00 2.69
236 237 9.734620 TGAAACACAAGTCTGAATTATTGAAAG 57.265 29.630 5.85 0.00 0.00 2.62
237 238 9.185192 GAAACACAAGTCTGAATTATTGAAAGG 57.815 33.333 5.85 0.00 0.00 3.11
238 239 7.823745 ACACAAGTCTGAATTATTGAAAGGT 57.176 32.000 5.85 0.00 0.00 3.50
239 240 8.237811 ACACAAGTCTGAATTATTGAAAGGTT 57.762 30.769 5.85 0.00 0.00 3.50
240 241 8.352942 ACACAAGTCTGAATTATTGAAAGGTTC 58.647 33.333 5.85 0.00 0.00 3.62
241 242 8.352201 CACAAGTCTGAATTATTGAAAGGTTCA 58.648 33.333 0.00 0.00 38.04 3.18
255 256 8.519799 TTGAAAGGTTCAAGTAATTTCAGAGT 57.480 30.769 0.00 0.00 44.21 3.24
256 257 7.930217 TGAAAGGTTCAAGTAATTTCAGAGTG 58.070 34.615 0.00 0.00 35.55 3.51
257 258 7.773224 TGAAAGGTTCAAGTAATTTCAGAGTGA 59.227 33.333 0.00 0.00 35.55 3.41
258 259 8.519799 AAAGGTTCAAGTAATTTCAGAGTGAA 57.480 30.769 0.00 0.00 34.03 3.18
259 260 7.736447 AGGTTCAAGTAATTTCAGAGTGAAG 57.264 36.000 0.00 0.00 37.70 3.02
260 261 7.283329 AGGTTCAAGTAATTTCAGAGTGAAGT 58.717 34.615 0.00 0.00 37.70 3.01
261 262 7.775561 AGGTTCAAGTAATTTCAGAGTGAAGTT 59.224 33.333 3.35 3.35 39.24 2.66
262 263 7.857885 GGTTCAAGTAATTTCAGAGTGAAGTTG 59.142 37.037 7.45 0.00 37.01 3.16
263 264 8.612619 GTTCAAGTAATTTCAGAGTGAAGTTGA 58.387 33.333 7.45 1.52 37.01 3.18
264 265 8.731275 TCAAGTAATTTCAGAGTGAAGTTGAA 57.269 30.769 7.45 0.00 37.01 2.69
265 266 9.173021 TCAAGTAATTTCAGAGTGAAGTTGAAA 57.827 29.630 7.45 1.90 42.83 2.69
266 267 9.787532 CAAGTAATTTCAGAGTGAAGTTGAAAA 57.212 29.630 7.45 0.00 42.20 2.29
271 272 9.741647 AATTTCAGAGTGAAGTTGAAAATCTTC 57.258 29.630 3.38 0.00 42.20 2.87
272 273 6.530913 TCAGAGTGAAGTTGAAAATCTTCG 57.469 37.500 0.00 0.00 41.77 3.79
273 274 6.049149 TCAGAGTGAAGTTGAAAATCTTCGT 58.951 36.000 0.00 0.00 41.77 3.85
274 275 6.018751 TCAGAGTGAAGTTGAAAATCTTCGTG 60.019 38.462 0.00 0.00 41.77 4.35
275 276 6.018751 CAGAGTGAAGTTGAAAATCTTCGTGA 60.019 38.462 0.00 0.00 41.77 4.35
276 277 6.018669 AGAGTGAAGTTGAAAATCTTCGTGAC 60.019 38.462 0.00 0.00 41.77 3.67
277 278 5.584649 AGTGAAGTTGAAAATCTTCGTGACA 59.415 36.000 0.00 0.00 41.77 3.58
278 279 6.093495 AGTGAAGTTGAAAATCTTCGTGACAA 59.907 34.615 0.00 0.00 41.77 3.18
279 280 6.412072 GTGAAGTTGAAAATCTTCGTGACAAG 59.588 38.462 0.00 0.00 41.77 3.16
280 281 6.315144 TGAAGTTGAAAATCTTCGTGACAAGA 59.685 34.615 0.00 1.18 41.77 3.02
281 282 6.292389 AGTTGAAAATCTTCGTGACAAGAG 57.708 37.500 4.38 0.00 35.83 2.85
282 283 5.237344 AGTTGAAAATCTTCGTGACAAGAGG 59.763 40.000 0.00 0.00 35.83 3.69
283 284 4.956085 TGAAAATCTTCGTGACAAGAGGA 58.044 39.130 5.71 5.71 35.83 3.71
284 285 5.551233 TGAAAATCTTCGTGACAAGAGGAT 58.449 37.500 9.65 9.65 35.83 3.24
285 286 6.697395 TGAAAATCTTCGTGACAAGAGGATA 58.303 36.000 14.62 0.00 35.83 2.59
286 287 7.158697 TGAAAATCTTCGTGACAAGAGGATAA 58.841 34.615 14.62 1.76 35.83 1.75
287 288 7.659799 TGAAAATCTTCGTGACAAGAGGATAAA 59.340 33.333 14.62 1.48 35.83 1.40
288 289 7.979444 AAATCTTCGTGACAAGAGGATAAAA 57.021 32.000 14.62 0.00 35.83 1.52
289 290 8.567285 AAATCTTCGTGACAAGAGGATAAAAT 57.433 30.769 14.62 0.00 35.83 1.82
290 291 6.968131 TCTTCGTGACAAGAGGATAAAATG 57.032 37.500 0.00 0.00 0.00 2.32
291 292 6.464222 TCTTCGTGACAAGAGGATAAAATGT 58.536 36.000 0.00 0.00 0.00 2.71
292 293 6.590292 TCTTCGTGACAAGAGGATAAAATGTC 59.410 38.462 0.00 0.00 40.53 3.06
293 294 6.037786 TCGTGACAAGAGGATAAAATGTCT 57.962 37.500 5.88 0.00 40.70 3.41
294 295 7.165460 TCGTGACAAGAGGATAAAATGTCTA 57.835 36.000 5.88 0.00 40.70 2.59
295 296 7.782049 TCGTGACAAGAGGATAAAATGTCTAT 58.218 34.615 5.88 0.00 40.70 1.98
296 297 7.706607 TCGTGACAAGAGGATAAAATGTCTATG 59.293 37.037 5.88 0.00 40.70 2.23
297 298 7.706607 CGTGACAAGAGGATAAAATGTCTATGA 59.293 37.037 5.88 0.00 40.70 2.15
298 299 9.553064 GTGACAAGAGGATAAAATGTCTATGAT 57.447 33.333 5.88 0.00 40.70 2.45
327 328 9.304731 GATCATAGAGATGAATATCTGAGTTGC 57.695 37.037 0.00 0.00 45.23 4.17
328 329 7.311408 TCATAGAGATGAATATCTGAGTTGCG 58.689 38.462 0.00 0.00 43.63 4.85
329 330 5.781210 AGAGATGAATATCTGAGTTGCGA 57.219 39.130 0.00 0.00 43.63 5.10
330 331 5.771469 AGAGATGAATATCTGAGTTGCGAG 58.229 41.667 0.00 0.00 43.63 5.03
331 332 5.301551 AGAGATGAATATCTGAGTTGCGAGT 59.698 40.000 0.00 0.00 43.63 4.18
332 333 5.911752 AGATGAATATCTGAGTTGCGAGTT 58.088 37.500 0.00 0.00 42.04 3.01
333 334 6.344500 AGATGAATATCTGAGTTGCGAGTTT 58.656 36.000 0.00 0.00 42.04 2.66
334 335 5.784750 TGAATATCTGAGTTGCGAGTTTG 57.215 39.130 0.00 0.00 0.00 2.93
335 336 4.631377 TGAATATCTGAGTTGCGAGTTTGG 59.369 41.667 0.00 0.00 0.00 3.28
336 337 2.550830 ATCTGAGTTGCGAGTTTGGT 57.449 45.000 0.00 0.00 0.00 3.67
337 338 3.678056 ATCTGAGTTGCGAGTTTGGTA 57.322 42.857 0.00 0.00 0.00 3.25
338 339 2.750948 TCTGAGTTGCGAGTTTGGTAC 58.249 47.619 0.00 0.00 0.00 3.34
339 340 2.101750 TCTGAGTTGCGAGTTTGGTACA 59.898 45.455 0.00 0.00 0.00 2.90
340 341 2.206750 TGAGTTGCGAGTTTGGTACAC 58.793 47.619 0.00 0.00 39.29 2.90
341 342 2.206750 GAGTTGCGAGTTTGGTACACA 58.793 47.619 0.00 0.00 39.29 3.72
342 343 2.610374 GAGTTGCGAGTTTGGTACACAA 59.390 45.455 0.00 0.00 39.29 3.33
343 344 3.211045 AGTTGCGAGTTTGGTACACAAT 58.789 40.909 0.00 0.00 39.29 2.71
344 345 3.630312 AGTTGCGAGTTTGGTACACAATT 59.370 39.130 0.00 0.00 39.29 2.32
345 346 4.817464 AGTTGCGAGTTTGGTACACAATTA 59.183 37.500 0.00 0.00 39.29 1.40
346 347 5.297278 AGTTGCGAGTTTGGTACACAATTAA 59.703 36.000 0.00 0.00 39.29 1.40
347 348 5.351233 TGCGAGTTTGGTACACAATTAAG 57.649 39.130 0.00 0.00 39.29 1.85
348 349 5.057819 TGCGAGTTTGGTACACAATTAAGA 58.942 37.500 0.00 0.00 39.29 2.10
349 350 5.049954 TGCGAGTTTGGTACACAATTAAGAC 60.050 40.000 0.00 0.00 39.29 3.01
350 351 5.049954 GCGAGTTTGGTACACAATTAAGACA 60.050 40.000 0.00 0.00 39.29 3.41
351 352 6.348213 GCGAGTTTGGTACACAATTAAGACAT 60.348 38.462 0.00 0.00 39.29 3.06
352 353 7.581476 CGAGTTTGGTACACAATTAAGACATT 58.419 34.615 0.00 0.00 39.29 2.71
353 354 7.533900 CGAGTTTGGTACACAATTAAGACATTG 59.466 37.037 0.00 0.00 39.29 2.82
354 355 8.232913 AGTTTGGTACACAATTAAGACATTGT 57.767 30.769 0.00 0.00 46.34 2.71
365 366 9.612066 ACAATTAAGACATTGTGGAAATTGTTT 57.388 25.926 18.22 6.17 44.19 2.83
367 368 9.829507 AATTAAGACATTGTGGAAATTGTTTCA 57.170 25.926 0.00 0.00 41.43 2.69
368 369 8.641499 TTAAGACATTGTGGAAATTGTTTCAC 57.359 30.769 0.00 0.00 41.43 3.18
369 370 6.219417 AGACATTGTGGAAATTGTTTCACA 57.781 33.333 0.00 0.00 41.43 3.58
370 371 6.638610 AGACATTGTGGAAATTGTTTCACAA 58.361 32.000 14.05 14.05 42.95 3.33
382 383 5.968528 TTGTTTCACAATTAATACCGCCT 57.031 34.783 0.00 0.00 32.34 5.52
383 384 5.303747 TGTTTCACAATTAATACCGCCTG 57.696 39.130 0.00 0.00 0.00 4.85
384 385 4.156922 TGTTTCACAATTAATACCGCCTGG 59.843 41.667 0.00 0.00 42.84 4.45
385 386 3.916359 TCACAATTAATACCGCCTGGA 57.084 42.857 0.00 0.00 39.21 3.86
386 387 4.223556 TCACAATTAATACCGCCTGGAA 57.776 40.909 0.00 0.00 39.21 3.53
387 388 4.787551 TCACAATTAATACCGCCTGGAAT 58.212 39.130 0.00 0.00 39.21 3.01
388 389 5.931294 TCACAATTAATACCGCCTGGAATA 58.069 37.500 0.00 0.00 39.21 1.75
389 390 5.761234 TCACAATTAATACCGCCTGGAATAC 59.239 40.000 0.00 0.00 39.21 1.89
390 391 5.048991 CACAATTAATACCGCCTGGAATACC 60.049 44.000 0.00 0.00 39.21 2.73
391 392 4.986054 ATTAATACCGCCTGGAATACCA 57.014 40.909 0.00 0.00 44.76 3.25
392 393 4.986054 TTAATACCGCCTGGAATACCAT 57.014 40.909 0.00 0.00 45.87 3.55
393 394 6.630203 ATTAATACCGCCTGGAATACCATA 57.370 37.500 0.00 0.00 45.87 2.74
394 395 4.553330 AATACCGCCTGGAATACCATAG 57.447 45.455 0.00 0.00 45.87 2.23
395 396 1.802553 ACCGCCTGGAATACCATAGT 58.197 50.000 0.00 0.00 45.87 2.12
396 397 1.416401 ACCGCCTGGAATACCATAGTG 59.584 52.381 0.00 0.00 45.87 2.74
397 398 1.416401 CCGCCTGGAATACCATAGTGT 59.584 52.381 0.00 0.00 45.87 3.55
398 399 2.483876 CGCCTGGAATACCATAGTGTG 58.516 52.381 0.00 0.00 45.87 3.82
399 400 2.102420 CGCCTGGAATACCATAGTGTGA 59.898 50.000 0.00 0.00 45.87 3.58
400 401 3.244215 CGCCTGGAATACCATAGTGTGAT 60.244 47.826 0.00 0.00 45.87 3.06
401 402 4.067896 GCCTGGAATACCATAGTGTGATG 58.932 47.826 0.00 0.00 45.87 3.07
409 410 2.632377 CCATAGTGTGATGGTGTGTCC 58.368 52.381 0.00 0.00 41.42 4.02
410 411 2.270923 CATAGTGTGATGGTGTGTCCG 58.729 52.381 0.00 0.00 39.52 4.79
411 412 1.623163 TAGTGTGATGGTGTGTCCGA 58.377 50.000 0.00 0.00 39.52 4.55
412 413 0.756294 AGTGTGATGGTGTGTCCGAA 59.244 50.000 0.00 0.00 39.52 4.30
413 414 0.865769 GTGTGATGGTGTGTCCGAAC 59.134 55.000 0.00 0.00 39.52 3.95
414 415 0.466124 TGTGATGGTGTGTCCGAACA 59.534 50.000 0.00 0.00 39.52 3.18
415 416 1.071542 TGTGATGGTGTGTCCGAACAT 59.928 47.619 0.00 0.00 37.81 2.71
416 417 1.732259 GTGATGGTGTGTCCGAACATC 59.268 52.381 0.00 0.00 37.81 3.06
417 418 1.346068 TGATGGTGTGTCCGAACATCA 59.654 47.619 0.00 0.00 44.92 3.07
418 419 2.787473 ATGGTGTGTCCGAACATCAT 57.213 45.000 5.96 5.96 44.71 2.45
420 421 3.686916 TGGTGTGTCCGAACATCATAA 57.313 42.857 0.00 0.00 36.26 1.90
421 422 3.331150 TGGTGTGTCCGAACATCATAAC 58.669 45.455 0.00 0.00 36.26 1.89
422 423 3.007506 TGGTGTGTCCGAACATCATAACT 59.992 43.478 0.00 0.00 36.26 2.24
423 424 3.370978 GGTGTGTCCGAACATCATAACTG 59.629 47.826 0.00 0.00 37.81 3.16
424 425 3.000041 TGTGTCCGAACATCATAACTGC 59.000 45.455 0.00 0.00 37.81 4.40
471 472 3.119602 ACAGAAGTTTATCAGTAGCGCGA 60.120 43.478 12.10 0.00 0.00 5.87
533 534 3.180387 GGTATAAAAACCGCGCTACTACG 59.820 47.826 5.56 0.00 0.00 3.51
635 637 2.254508 AGTAGCGAGGGGTACAAAACT 58.745 47.619 6.27 0.00 46.92 2.66
738 740 3.015145 CCAACCCCCGATCCACCT 61.015 66.667 0.00 0.00 0.00 4.00
755 762 2.768769 TCACCCCACCAACCGTCA 60.769 61.111 0.00 0.00 0.00 4.35
856 874 1.006102 CCAGTCGCACTTCTTCCGT 60.006 57.895 0.00 0.00 0.00 4.69
863 881 0.033504 GCACTTCTTCCGTGACCTCA 59.966 55.000 0.00 0.00 34.35 3.86
901 919 0.975040 GAGCAGCAGAGGAGGGAGAA 60.975 60.000 0.00 0.00 0.00 2.87
926 945 1.344191 GCCCAGATCTGCCCTTCTCT 61.344 60.000 17.76 0.00 0.00 3.10
975 994 2.664081 CCAGCAGGTGAGGAGGGAC 61.664 68.421 0.00 0.00 0.00 4.46
1025 1044 0.613260 AGCTACAATGCGTTCCTGGA 59.387 50.000 0.00 0.00 38.13 3.86
1035 1054 1.592400 CGTTCCTGGAGACCACGCTA 61.592 60.000 5.79 0.00 0.00 4.26
1121 1140 4.355720 GGTGTTCCCCCGGGGTTC 62.356 72.222 37.66 25.61 44.74 3.62
1149 1168 1.276421 GAGGTGCTGGATGTGTACAGT 59.724 52.381 0.00 0.00 38.65 3.55
1155 1174 0.840288 TGGATGTGTACAGTGGCCCT 60.840 55.000 0.00 0.00 0.00 5.19
1423 1473 1.506493 CTCGCAAGCTTCTTGTCTGT 58.494 50.000 0.00 0.00 37.18 3.41
1481 1540 2.475155 TGCCTTGTGATGAGAGGAGAT 58.525 47.619 0.00 0.00 32.11 2.75
1488 1547 3.516700 TGTGATGAGAGGAGATTGAAGCA 59.483 43.478 0.00 0.00 0.00 3.91
1534 1593 6.814146 GCTTGTCACTAGCTAGTATTGTCTTT 59.186 38.462 25.63 0.00 35.74 2.52
1661 1734 1.118838 GGCTGTGGAGATGTAGCTCT 58.881 55.000 0.00 0.00 36.45 4.09
1712 1785 2.040947 CTCCCCTCTTCCTTTTGCTTCT 59.959 50.000 0.00 0.00 0.00 2.85
1983 2060 8.501580 CGAATGAATATATGCATCACTCTTTGT 58.498 33.333 0.19 0.00 0.00 2.83
1986 2063 9.961265 ATGAATATATGCATCACTCTTTGTTTG 57.039 29.630 0.19 0.00 0.00 2.93
2239 2318 2.623765 CCATGGGGGACATCAACATCAA 60.624 50.000 2.85 0.00 37.84 2.57
2336 2428 6.636562 GCTGTGAGCTAGTTCCTAATACTA 57.363 41.667 3.94 0.00 38.45 1.82
2458 2552 7.886970 ACATAGTAGGTGACACTAGTAACTCAA 59.113 37.037 5.39 0.00 33.77 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.384224 TGCATGTCTCAAGTGATTCAAAATC 58.616 36.000 0.00 0.00 0.00 2.17
4 5 5.771153 TTGCATGTCTCAAGTGATTCAAA 57.229 34.783 0.00 0.00 0.00 2.69
5 6 5.771153 TTTGCATGTCTCAAGTGATTCAA 57.229 34.783 0.00 0.00 0.00 2.69
6 7 5.474189 TGATTTGCATGTCTCAAGTGATTCA 59.526 36.000 0.00 0.00 0.00 2.57
7 8 5.946298 TGATTTGCATGTCTCAAGTGATTC 58.054 37.500 0.00 0.00 0.00 2.52
8 9 5.970317 TGATTTGCATGTCTCAAGTGATT 57.030 34.783 0.00 0.00 0.00 2.57
9 10 6.039047 GGTATGATTTGCATGTCTCAAGTGAT 59.961 38.462 0.00 0.00 37.87 3.06
10 11 5.355071 GGTATGATTTGCATGTCTCAAGTGA 59.645 40.000 0.00 0.00 37.87 3.41
11 12 5.124297 TGGTATGATTTGCATGTCTCAAGTG 59.876 40.000 0.00 0.00 37.87 3.16
12 13 5.124457 GTGGTATGATTTGCATGTCTCAAGT 59.876 40.000 0.00 0.00 37.87 3.16
13 14 5.124297 TGTGGTATGATTTGCATGTCTCAAG 59.876 40.000 0.00 0.00 37.87 3.02
14 15 5.008980 TGTGGTATGATTTGCATGTCTCAA 58.991 37.500 0.00 0.00 37.87 3.02
15 16 4.587891 TGTGGTATGATTTGCATGTCTCA 58.412 39.130 0.00 0.00 37.87 3.27
16 17 5.506815 CCATGTGGTATGATTTGCATGTCTC 60.507 44.000 0.00 0.00 37.87 3.36
17 18 4.340097 CCATGTGGTATGATTTGCATGTCT 59.660 41.667 0.00 0.00 37.87 3.41
18 19 4.500205 CCCATGTGGTATGATTTGCATGTC 60.500 45.833 0.00 0.00 37.87 3.06
19 20 3.385433 CCCATGTGGTATGATTTGCATGT 59.615 43.478 0.00 0.00 37.87 3.21
20 21 3.800949 GCCCATGTGGTATGATTTGCATG 60.801 47.826 0.00 0.00 34.79 4.06
21 22 2.366266 GCCCATGTGGTATGATTTGCAT 59.634 45.455 0.00 0.00 36.34 3.96
22 23 1.755959 GCCCATGTGGTATGATTTGCA 59.244 47.619 0.00 0.00 36.04 4.08
23 24 1.755959 TGCCCATGTGGTATGATTTGC 59.244 47.619 0.00 0.00 36.04 3.68
24 25 3.700539 TCTTGCCCATGTGGTATGATTTG 59.299 43.478 0.00 0.00 36.04 2.32
25 26 3.979911 TCTTGCCCATGTGGTATGATTT 58.020 40.909 0.00 0.00 36.04 2.17
26 27 3.668141 TCTTGCCCATGTGGTATGATT 57.332 42.857 0.00 0.00 36.04 2.57
27 28 3.138839 TCATCTTGCCCATGTGGTATGAT 59.861 43.478 11.17 11.17 42.08 2.45
28 29 2.509131 TCATCTTGCCCATGTGGTATGA 59.491 45.455 8.47 8.47 37.32 2.15
29 30 2.620115 GTCATCTTGCCCATGTGGTATG 59.380 50.000 0.00 0.00 36.04 2.39
30 31 2.511218 AGTCATCTTGCCCATGTGGTAT 59.489 45.455 0.00 0.00 36.04 2.73
31 32 1.915489 AGTCATCTTGCCCATGTGGTA 59.085 47.619 0.00 0.00 36.04 3.25
32 33 0.700564 AGTCATCTTGCCCATGTGGT 59.299 50.000 0.00 0.00 36.04 4.16
33 34 1.843368 AAGTCATCTTGCCCATGTGG 58.157 50.000 0.00 0.00 32.09 4.17
34 35 5.389859 TTTTAAGTCATCTTGCCCATGTG 57.610 39.130 0.00 0.00 35.36 3.21
35 36 4.082026 GCTTTTAAGTCATCTTGCCCATGT 60.082 41.667 0.00 0.00 35.36 3.21
36 37 4.427312 GCTTTTAAGTCATCTTGCCCATG 58.573 43.478 0.00 0.00 35.36 3.66
37 38 3.448660 GGCTTTTAAGTCATCTTGCCCAT 59.551 43.478 0.00 0.00 34.79 4.00
38 39 2.825532 GGCTTTTAAGTCATCTTGCCCA 59.174 45.455 0.00 0.00 34.79 5.36
39 40 3.092301 AGGCTTTTAAGTCATCTTGCCC 58.908 45.455 0.00 0.00 38.79 5.36
40 41 3.758554 TGAGGCTTTTAAGTCATCTTGCC 59.241 43.478 0.00 0.00 38.49 4.52
41 42 5.573337 ATGAGGCTTTTAAGTCATCTTGC 57.427 39.130 0.00 0.00 35.36 4.01
42 43 8.084073 TGAAAATGAGGCTTTTAAGTCATCTTG 58.916 33.333 0.00 0.00 35.36 3.02
43 44 8.181904 TGAAAATGAGGCTTTTAAGTCATCTT 57.818 30.769 0.00 0.00 37.65 2.40
44 45 7.449704 ACTGAAAATGAGGCTTTTAAGTCATCT 59.550 33.333 0.00 0.00 35.71 2.90
45 46 7.597386 ACTGAAAATGAGGCTTTTAAGTCATC 58.403 34.615 0.00 0.00 35.71 2.92
46 47 7.530426 ACTGAAAATGAGGCTTTTAAGTCAT 57.470 32.000 0.00 0.00 35.71 3.06
47 48 6.959639 ACTGAAAATGAGGCTTTTAAGTCA 57.040 33.333 0.00 0.00 35.71 3.41
48 49 8.784043 TCTTACTGAAAATGAGGCTTTTAAGTC 58.216 33.333 3.87 0.00 38.54 3.01
49 50 8.691661 TCTTACTGAAAATGAGGCTTTTAAGT 57.308 30.769 5.66 5.66 40.99 2.24
50 51 9.565213 CATCTTACTGAAAATGAGGCTTTTAAG 57.435 33.333 0.00 0.00 34.15 1.85
51 52 8.522830 CCATCTTACTGAAAATGAGGCTTTTAA 58.477 33.333 0.00 0.00 0.00 1.52
52 53 7.888021 TCCATCTTACTGAAAATGAGGCTTTTA 59.112 33.333 0.00 0.00 0.00 1.52
53 54 6.721208 TCCATCTTACTGAAAATGAGGCTTTT 59.279 34.615 0.00 0.00 0.00 2.27
54 55 6.248433 TCCATCTTACTGAAAATGAGGCTTT 58.752 36.000 0.00 0.00 0.00 3.51
55 56 5.819991 TCCATCTTACTGAAAATGAGGCTT 58.180 37.500 0.00 0.00 0.00 4.35
56 57 5.441718 TCCATCTTACTGAAAATGAGGCT 57.558 39.130 0.00 0.00 0.00 4.58
57 58 5.415701 TGTTCCATCTTACTGAAAATGAGGC 59.584 40.000 0.00 0.00 0.00 4.70
58 59 7.391554 TCTTGTTCCATCTTACTGAAAATGAGG 59.608 37.037 0.00 0.00 0.00 3.86
59 60 8.327941 TCTTGTTCCATCTTACTGAAAATGAG 57.672 34.615 0.00 0.00 0.00 2.90
60 61 8.156820 TCTCTTGTTCCATCTTACTGAAAATGA 58.843 33.333 0.00 0.00 0.00 2.57
61 62 8.327941 TCTCTTGTTCCATCTTACTGAAAATG 57.672 34.615 0.00 0.00 0.00 2.32
62 63 7.120432 GCTCTCTTGTTCCATCTTACTGAAAAT 59.880 37.037 0.00 0.00 0.00 1.82
63 64 6.428159 GCTCTCTTGTTCCATCTTACTGAAAA 59.572 38.462 0.00 0.00 0.00 2.29
64 65 5.934625 GCTCTCTTGTTCCATCTTACTGAAA 59.065 40.000 0.00 0.00 0.00 2.69
65 66 5.012046 TGCTCTCTTGTTCCATCTTACTGAA 59.988 40.000 0.00 0.00 0.00 3.02
66 67 4.528206 TGCTCTCTTGTTCCATCTTACTGA 59.472 41.667 0.00 0.00 0.00 3.41
67 68 4.825422 TGCTCTCTTGTTCCATCTTACTG 58.175 43.478 0.00 0.00 0.00 2.74
68 69 5.012561 AGTTGCTCTCTTGTTCCATCTTACT 59.987 40.000 0.00 0.00 0.00 2.24
69 70 5.241662 AGTTGCTCTCTTGTTCCATCTTAC 58.758 41.667 0.00 0.00 0.00 2.34
70 71 5.489792 AGTTGCTCTCTTGTTCCATCTTA 57.510 39.130 0.00 0.00 0.00 2.10
71 72 4.363991 AGTTGCTCTCTTGTTCCATCTT 57.636 40.909 0.00 0.00 0.00 2.40
72 73 4.070716 CAAGTTGCTCTCTTGTTCCATCT 58.929 43.478 0.00 0.00 37.90 2.90
73 74 4.416505 CAAGTTGCTCTCTTGTTCCATC 57.583 45.455 0.00 0.00 37.90 3.51
80 81 3.629398 ACTTCCAACAAGTTGCTCTCTTG 59.371 43.478 1.81 12.09 45.15 3.02
81 82 3.891049 ACTTCCAACAAGTTGCTCTCTT 58.109 40.909 1.81 0.00 39.16 2.85
82 83 3.567478 ACTTCCAACAAGTTGCTCTCT 57.433 42.857 1.81 0.00 39.16 3.10
83 84 5.948992 ATTACTTCCAACAAGTTGCTCTC 57.051 39.130 1.81 0.00 39.16 3.20
84 85 6.296026 TGTATTACTTCCAACAAGTTGCTCT 58.704 36.000 1.81 0.00 39.16 4.09
85 86 6.554334 TGTATTACTTCCAACAAGTTGCTC 57.446 37.500 1.81 0.00 39.16 4.26
86 87 7.524717 AATGTATTACTTCCAACAAGTTGCT 57.475 32.000 1.81 0.00 39.16 3.91
87 88 8.487176 CAAAATGTATTACTTCCAACAAGTTGC 58.513 33.333 1.81 0.00 39.16 4.17
88 89 9.743057 TCAAAATGTATTACTTCCAACAAGTTG 57.257 29.630 0.00 0.00 40.13 3.16
90 91 9.912634 CATCAAAATGTATTACTTCCAACAAGT 57.087 29.630 0.00 0.00 0.00 3.16
91 92 9.912634 ACATCAAAATGTATTACTTCCAACAAG 57.087 29.630 0.00 0.00 44.38 3.16
92 93 9.689976 CACATCAAAATGTATTACTTCCAACAA 57.310 29.630 0.00 0.00 44.41 2.83
93 94 8.855110 ACACATCAAAATGTATTACTTCCAACA 58.145 29.630 0.00 0.00 44.41 3.33
94 95 9.128107 CACACATCAAAATGTATTACTTCCAAC 57.872 33.333 0.00 0.00 44.41 3.77
95 96 7.812191 GCACACATCAAAATGTATTACTTCCAA 59.188 33.333 0.00 0.00 44.41 3.53
96 97 7.040132 TGCACACATCAAAATGTATTACTTCCA 60.040 33.333 0.00 0.00 44.41 3.53
97 98 7.312154 TGCACACATCAAAATGTATTACTTCC 58.688 34.615 0.00 0.00 44.41 3.46
98 99 8.741101 TTGCACACATCAAAATGTATTACTTC 57.259 30.769 0.00 0.00 44.41 3.01
99 100 9.357652 GATTGCACACATCAAAATGTATTACTT 57.642 29.630 0.00 0.00 44.41 2.24
100 101 8.522003 TGATTGCACACATCAAAATGTATTACT 58.478 29.630 0.00 0.00 44.41 2.24
101 102 8.686397 TGATTGCACACATCAAAATGTATTAC 57.314 30.769 0.00 0.00 44.41 1.89
102 103 9.702494 TTTGATTGCACACATCAAAATGTATTA 57.298 25.926 18.31 0.00 44.41 0.98
103 104 8.604640 TTTGATTGCACACATCAAAATGTATT 57.395 26.923 18.31 0.00 44.41 1.89
104 105 8.661257 CATTTGATTGCACACATCAAAATGTAT 58.339 29.630 22.38 8.59 44.41 2.29
105 106 7.871463 TCATTTGATTGCACACATCAAAATGTA 59.129 29.630 22.38 10.25 44.41 2.29
107 108 7.095397 ACTCATTTGATTGCACACATCAAAATG 60.095 33.333 22.38 19.58 44.30 2.32
108 109 6.932400 ACTCATTTGATTGCACACATCAAAAT 59.068 30.769 22.38 12.26 44.30 1.82
109 110 6.201234 CACTCATTTGATTGCACACATCAAAA 59.799 34.615 22.38 10.96 44.30 2.44
110 111 5.692654 CACTCATTTGATTGCACACATCAAA 59.307 36.000 21.33 21.33 44.93 2.69
111 112 5.221283 ACACTCATTTGATTGCACACATCAA 60.221 36.000 7.98 7.98 33.07 2.57
112 113 4.278919 ACACTCATTTGATTGCACACATCA 59.721 37.500 0.00 0.00 0.00 3.07
113 114 4.801891 ACACTCATTTGATTGCACACATC 58.198 39.130 0.00 0.00 0.00 3.06
114 115 4.859304 ACACTCATTTGATTGCACACAT 57.141 36.364 0.00 0.00 0.00 3.21
115 116 4.097589 TCAACACTCATTTGATTGCACACA 59.902 37.500 0.00 0.00 0.00 3.72
116 117 4.609947 TCAACACTCATTTGATTGCACAC 58.390 39.130 0.00 0.00 0.00 3.82
117 118 4.261698 CCTCAACACTCATTTGATTGCACA 60.262 41.667 0.00 0.00 32.57 4.57
118 119 4.232221 CCTCAACACTCATTTGATTGCAC 58.768 43.478 0.00 0.00 32.57 4.57
119 120 3.305539 GCCTCAACACTCATTTGATTGCA 60.306 43.478 0.00 0.00 33.79 4.08
120 121 3.248266 GCCTCAACACTCATTTGATTGC 58.752 45.455 0.00 0.00 32.57 3.56
121 122 4.232221 GTGCCTCAACACTCATTTGATTG 58.768 43.478 0.00 0.00 37.58 2.67
122 123 3.058016 CGTGCCTCAACACTCATTTGATT 60.058 43.478 0.00 0.00 38.45 2.57
123 124 2.485426 CGTGCCTCAACACTCATTTGAT 59.515 45.455 0.00 0.00 38.45 2.57
124 125 1.872952 CGTGCCTCAACACTCATTTGA 59.127 47.619 0.00 0.00 38.45 2.69
125 126 1.664016 GCGTGCCTCAACACTCATTTG 60.664 52.381 0.00 0.00 38.45 2.32
126 127 0.593128 GCGTGCCTCAACACTCATTT 59.407 50.000 0.00 0.00 38.45 2.32
127 128 0.534877 TGCGTGCCTCAACACTCATT 60.535 50.000 0.00 0.00 38.45 2.57
128 129 0.952497 CTGCGTGCCTCAACACTCAT 60.952 55.000 0.00 0.00 34.96 2.90
129 130 1.595109 CTGCGTGCCTCAACACTCA 60.595 57.895 0.00 0.00 38.45 3.41
130 131 1.595382 ACTGCGTGCCTCAACACTC 60.595 57.895 0.00 0.00 38.45 3.51
131 132 1.889105 CACTGCGTGCCTCAACACT 60.889 57.895 0.00 0.00 38.45 3.55
132 133 2.633657 CACTGCGTGCCTCAACAC 59.366 61.111 0.00 0.00 37.19 3.32
133 134 2.395988 ATCCACTGCGTGCCTCAACA 62.396 55.000 3.56 0.00 31.34 3.33
134 135 0.391130 TATCCACTGCGTGCCTCAAC 60.391 55.000 3.56 0.00 31.34 3.18
135 136 0.541392 ATATCCACTGCGTGCCTCAA 59.459 50.000 3.56 0.00 31.34 3.02
136 137 0.104855 GATATCCACTGCGTGCCTCA 59.895 55.000 3.56 0.00 31.34 3.86
137 138 0.390860 AGATATCCACTGCGTGCCTC 59.609 55.000 0.00 0.00 31.34 4.70
138 139 0.833287 AAGATATCCACTGCGTGCCT 59.167 50.000 0.00 0.00 31.34 4.75
139 140 1.668419 AAAGATATCCACTGCGTGCC 58.332 50.000 0.00 0.00 31.34 5.01
140 141 3.809832 ACATAAAGATATCCACTGCGTGC 59.190 43.478 0.00 0.00 31.34 5.34
141 142 5.755375 AGAACATAAAGATATCCACTGCGTG 59.245 40.000 0.00 2.27 0.00 5.34
142 143 5.918608 AGAACATAAAGATATCCACTGCGT 58.081 37.500 0.00 0.00 0.00 5.24
143 144 6.653183 CAAGAACATAAAGATATCCACTGCG 58.347 40.000 0.00 0.00 0.00 5.18
144 145 6.261826 AGCAAGAACATAAAGATATCCACTGC 59.738 38.462 0.00 0.00 0.00 4.40
145 146 7.798596 AGCAAGAACATAAAGATATCCACTG 57.201 36.000 0.00 0.00 0.00 3.66
146 147 8.049117 TGAAGCAAGAACATAAAGATATCCACT 58.951 33.333 0.00 0.00 0.00 4.00
147 148 8.213518 TGAAGCAAGAACATAAAGATATCCAC 57.786 34.615 0.00 0.00 0.00 4.02
148 149 8.985315 ATGAAGCAAGAACATAAAGATATCCA 57.015 30.769 0.00 0.00 0.00 3.41
153 154 9.842775 TCATCTATGAAGCAAGAACATAAAGAT 57.157 29.630 0.00 0.00 33.08 2.40
154 155 9.842775 ATCATCTATGAAGCAAGAACATAAAGA 57.157 29.630 0.00 0.00 40.69 2.52
158 159 9.617523 TCAAATCATCTATGAAGCAAGAACATA 57.382 29.630 0.00 0.00 40.69 2.29
159 160 8.515695 TCAAATCATCTATGAAGCAAGAACAT 57.484 30.769 0.00 0.00 40.69 2.71
160 161 7.609146 ACTCAAATCATCTATGAAGCAAGAACA 59.391 33.333 0.00 0.00 40.69 3.18
161 162 7.983307 ACTCAAATCATCTATGAAGCAAGAAC 58.017 34.615 0.00 0.00 40.69 3.01
162 163 9.322773 CTACTCAAATCATCTATGAAGCAAGAA 57.677 33.333 0.00 0.00 40.69 2.52
163 164 8.699130 TCTACTCAAATCATCTATGAAGCAAGA 58.301 33.333 0.00 0.00 40.69 3.02
164 165 8.883954 TCTACTCAAATCATCTATGAAGCAAG 57.116 34.615 0.00 0.00 40.69 4.01
165 166 9.269453 CATCTACTCAAATCATCTATGAAGCAA 57.731 33.333 0.00 0.00 40.69 3.91
166 167 7.387122 GCATCTACTCAAATCATCTATGAAGCA 59.613 37.037 0.00 0.00 40.69 3.91
167 168 7.603404 AGCATCTACTCAAATCATCTATGAAGC 59.397 37.037 0.00 0.00 40.69 3.86
171 172 9.926158 ACTTAGCATCTACTCAAATCATCTATG 57.074 33.333 0.00 0.00 0.00 2.23
205 206 9.903682 AATAATTCAGACTTGTGTTTCATCAAG 57.096 29.630 0.00 0.00 44.29 3.02
206 207 9.681692 CAATAATTCAGACTTGTGTTTCATCAA 57.318 29.630 0.00 0.00 0.00 2.57
207 208 9.065798 TCAATAATTCAGACTTGTGTTTCATCA 57.934 29.630 0.00 0.00 0.00 3.07
208 209 9.897744 TTCAATAATTCAGACTTGTGTTTCATC 57.102 29.630 0.00 0.00 0.00 2.92
210 211 9.734620 CTTTCAATAATTCAGACTTGTGTTTCA 57.265 29.630 0.00 0.00 0.00 2.69
211 212 9.185192 CCTTTCAATAATTCAGACTTGTGTTTC 57.815 33.333 0.00 0.00 0.00 2.78
212 213 8.695456 ACCTTTCAATAATTCAGACTTGTGTTT 58.305 29.630 0.00 0.00 0.00 2.83
213 214 8.237811 ACCTTTCAATAATTCAGACTTGTGTT 57.762 30.769 0.00 0.00 0.00 3.32
214 215 7.823745 ACCTTTCAATAATTCAGACTTGTGT 57.176 32.000 0.00 0.00 0.00 3.72
215 216 8.352201 TGAACCTTTCAATAATTCAGACTTGTG 58.648 33.333 0.00 0.00 36.59 3.33
216 217 8.463930 TGAACCTTTCAATAATTCAGACTTGT 57.536 30.769 0.00 0.00 36.59 3.16
230 231 8.405531 CACTCTGAAATTACTTGAACCTTTCAA 58.594 33.333 1.60 1.60 46.68 2.69
231 232 7.773224 TCACTCTGAAATTACTTGAACCTTTCA 59.227 33.333 0.00 0.00 38.04 2.69
232 233 8.154649 TCACTCTGAAATTACTTGAACCTTTC 57.845 34.615 0.00 0.00 0.00 2.62
233 234 8.519799 TTCACTCTGAAATTACTTGAACCTTT 57.480 30.769 0.00 0.00 32.71 3.11
234 235 7.775561 ACTTCACTCTGAAATTACTTGAACCTT 59.224 33.333 0.00 0.00 35.73 3.50
235 236 7.283329 ACTTCACTCTGAAATTACTTGAACCT 58.717 34.615 0.00 0.00 35.73 3.50
236 237 7.497925 ACTTCACTCTGAAATTACTTGAACC 57.502 36.000 0.00 0.00 35.73 3.62
237 238 8.612619 TCAACTTCACTCTGAAATTACTTGAAC 58.387 33.333 0.00 0.00 35.73 3.18
238 239 8.731275 TCAACTTCACTCTGAAATTACTTGAA 57.269 30.769 0.00 0.00 35.73 2.69
239 240 8.731275 TTCAACTTCACTCTGAAATTACTTGA 57.269 30.769 0.00 0.00 35.73 3.02
240 241 9.787532 TTTTCAACTTCACTCTGAAATTACTTG 57.212 29.630 0.00 0.00 38.49 3.16
245 246 9.741647 GAAGATTTTCAACTTCACTCTGAAATT 57.258 29.630 0.00 0.00 41.18 1.82
246 247 8.072567 CGAAGATTTTCAACTTCACTCTGAAAT 58.927 33.333 0.00 0.00 41.47 2.17
247 248 7.065803 ACGAAGATTTTCAACTTCACTCTGAAA 59.934 33.333 0.00 0.00 41.47 2.69
248 249 6.538742 ACGAAGATTTTCAACTTCACTCTGAA 59.461 34.615 0.00 0.00 41.47 3.02
249 250 6.018751 CACGAAGATTTTCAACTTCACTCTGA 60.019 38.462 0.00 0.00 41.47 3.27
250 251 6.018751 TCACGAAGATTTTCAACTTCACTCTG 60.019 38.462 0.00 0.00 41.47 3.35
251 252 6.018669 GTCACGAAGATTTTCAACTTCACTCT 60.019 38.462 0.00 0.00 41.47 3.24
252 253 6.130058 GTCACGAAGATTTTCAACTTCACTC 58.870 40.000 0.00 0.00 41.47 3.51
253 254 5.584649 TGTCACGAAGATTTTCAACTTCACT 59.415 36.000 0.00 0.00 41.47 3.41
254 255 5.806286 TGTCACGAAGATTTTCAACTTCAC 58.194 37.500 0.00 0.00 41.47 3.18
255 256 6.315144 TCTTGTCACGAAGATTTTCAACTTCA 59.685 34.615 0.00 0.00 41.47 3.02
256 257 6.715464 TCTTGTCACGAAGATTTTCAACTTC 58.285 36.000 0.00 0.00 39.05 3.01
257 258 6.238484 CCTCTTGTCACGAAGATTTTCAACTT 60.238 38.462 0.00 0.00 31.51 2.66
258 259 5.237344 CCTCTTGTCACGAAGATTTTCAACT 59.763 40.000 0.00 0.00 31.51 3.16
259 260 5.236478 TCCTCTTGTCACGAAGATTTTCAAC 59.764 40.000 0.00 0.00 31.51 3.18
260 261 5.364778 TCCTCTTGTCACGAAGATTTTCAA 58.635 37.500 0.00 0.00 31.51 2.69
261 262 4.956085 TCCTCTTGTCACGAAGATTTTCA 58.044 39.130 0.00 0.00 31.51 2.69
262 263 7.596749 TTATCCTCTTGTCACGAAGATTTTC 57.403 36.000 0.00 0.00 31.51 2.29
263 264 7.979444 TTTATCCTCTTGTCACGAAGATTTT 57.021 32.000 0.00 0.00 31.51 1.82
264 265 7.979444 TTTTATCCTCTTGTCACGAAGATTT 57.021 32.000 0.00 0.00 31.51 2.17
265 266 7.607991 ACATTTTATCCTCTTGTCACGAAGATT 59.392 33.333 0.00 0.00 31.51 2.40
266 267 7.106239 ACATTTTATCCTCTTGTCACGAAGAT 58.894 34.615 0.00 0.00 31.51 2.40
267 268 6.464222 ACATTTTATCCTCTTGTCACGAAGA 58.536 36.000 0.00 0.00 0.00 2.87
268 269 6.591834 AGACATTTTATCCTCTTGTCACGAAG 59.408 38.462 4.42 0.00 39.27 3.79
269 270 6.464222 AGACATTTTATCCTCTTGTCACGAA 58.536 36.000 4.42 0.00 39.27 3.85
270 271 6.037786 AGACATTTTATCCTCTTGTCACGA 57.962 37.500 4.42 0.00 39.27 4.35
271 272 7.706607 TCATAGACATTTTATCCTCTTGTCACG 59.293 37.037 4.42 0.00 39.27 4.35
272 273 8.948631 TCATAGACATTTTATCCTCTTGTCAC 57.051 34.615 4.42 0.00 39.27 3.67
301 302 9.304731 GCAACTCAGATATTCATCTCTATGATC 57.695 37.037 0.00 0.00 41.73 2.92
302 303 7.975058 CGCAACTCAGATATTCATCTCTATGAT 59.025 37.037 0.00 0.00 41.73 2.45
303 304 7.175641 TCGCAACTCAGATATTCATCTCTATGA 59.824 37.037 0.00 0.00 39.62 2.15
304 305 7.311408 TCGCAACTCAGATATTCATCTCTATG 58.689 38.462 0.00 0.00 39.62 2.23
305 306 7.176515 ACTCGCAACTCAGATATTCATCTCTAT 59.823 37.037 0.00 0.00 39.62 1.98
306 307 6.488344 ACTCGCAACTCAGATATTCATCTCTA 59.512 38.462 0.00 0.00 39.62 2.43
307 308 5.301551 ACTCGCAACTCAGATATTCATCTCT 59.698 40.000 0.00 0.00 39.62 3.10
308 309 5.527951 ACTCGCAACTCAGATATTCATCTC 58.472 41.667 0.00 0.00 39.62 2.75
309 310 5.528043 ACTCGCAACTCAGATATTCATCT 57.472 39.130 0.00 0.00 42.52 2.90
310 311 6.417327 CAAACTCGCAACTCAGATATTCATC 58.583 40.000 0.00 0.00 0.00 2.92
311 312 5.295292 CCAAACTCGCAACTCAGATATTCAT 59.705 40.000 0.00 0.00 0.00 2.57
312 313 4.631377 CCAAACTCGCAACTCAGATATTCA 59.369 41.667 0.00 0.00 0.00 2.57
313 314 4.631813 ACCAAACTCGCAACTCAGATATTC 59.368 41.667 0.00 0.00 0.00 1.75
314 315 4.579869 ACCAAACTCGCAACTCAGATATT 58.420 39.130 0.00 0.00 0.00 1.28
315 316 4.207891 ACCAAACTCGCAACTCAGATAT 57.792 40.909 0.00 0.00 0.00 1.63
316 317 3.678056 ACCAAACTCGCAACTCAGATA 57.322 42.857 0.00 0.00 0.00 1.98
317 318 2.550830 ACCAAACTCGCAACTCAGAT 57.449 45.000 0.00 0.00 0.00 2.90
318 319 2.101750 TGTACCAAACTCGCAACTCAGA 59.898 45.455 0.00 0.00 0.00 3.27
319 320 2.221055 GTGTACCAAACTCGCAACTCAG 59.779 50.000 0.00 0.00 0.00 3.35
320 321 2.206750 GTGTACCAAACTCGCAACTCA 58.793 47.619 0.00 0.00 0.00 3.41
321 322 2.206750 TGTGTACCAAACTCGCAACTC 58.793 47.619 0.00 0.00 0.00 3.01
322 323 2.319136 TGTGTACCAAACTCGCAACT 57.681 45.000 0.00 0.00 0.00 3.16
323 324 3.619233 ATTGTGTACCAAACTCGCAAC 57.381 42.857 1.64 0.00 36.44 4.17
324 325 5.527951 TCTTAATTGTGTACCAAACTCGCAA 59.472 36.000 1.64 0.00 36.44 4.85
325 326 5.049954 GTCTTAATTGTGTACCAAACTCGCA 60.050 40.000 1.64 0.00 36.44 5.10
326 327 5.049954 TGTCTTAATTGTGTACCAAACTCGC 60.050 40.000 1.64 0.00 36.44 5.03
327 328 6.533819 TGTCTTAATTGTGTACCAAACTCG 57.466 37.500 1.64 0.00 36.44 4.18
328 329 8.349983 ACAATGTCTTAATTGTGTACCAAACTC 58.650 33.333 1.94 0.00 46.46 3.01
329 330 8.232913 ACAATGTCTTAATTGTGTACCAAACT 57.767 30.769 1.94 0.00 46.46 2.66
341 342 9.829507 TGAAACAATTTCCACAATGTCTTAATT 57.170 25.926 0.00 0.00 38.90 1.40
342 343 9.260002 GTGAAACAATTTCCACAATGTCTTAAT 57.740 29.630 0.00 0.00 38.90 1.40
343 344 8.641499 GTGAAACAATTTCCACAATGTCTTAA 57.359 30.769 0.00 0.00 38.90 1.85
362 363 4.396790 TCCAGGCGGTATTAATTGTGAAAC 59.603 41.667 0.00 0.00 37.35 2.78
363 364 4.590918 TCCAGGCGGTATTAATTGTGAAA 58.409 39.130 0.00 0.00 0.00 2.69
364 365 4.223556 TCCAGGCGGTATTAATTGTGAA 57.776 40.909 0.00 0.00 0.00 3.18
365 366 3.916359 TCCAGGCGGTATTAATTGTGA 57.084 42.857 0.00 0.00 0.00 3.58
366 367 5.048991 GGTATTCCAGGCGGTATTAATTGTG 60.049 44.000 0.00 0.00 0.00 3.33
367 368 5.067954 GGTATTCCAGGCGGTATTAATTGT 58.932 41.667 0.00 0.00 0.00 2.71
368 369 5.067273 TGGTATTCCAGGCGGTATTAATTG 58.933 41.667 0.00 0.00 39.03 2.32
369 370 5.313280 TGGTATTCCAGGCGGTATTAATT 57.687 39.130 0.00 0.00 39.03 1.40
370 371 4.986054 TGGTATTCCAGGCGGTATTAAT 57.014 40.909 0.00 0.00 39.03 1.40
390 391 2.094234 TCGGACACACCATCACACTATG 60.094 50.000 0.00 0.00 38.90 2.23
391 392 2.176045 TCGGACACACCATCACACTAT 58.824 47.619 0.00 0.00 38.90 2.12
392 393 1.623163 TCGGACACACCATCACACTA 58.377 50.000 0.00 0.00 38.90 2.74
393 394 0.756294 TTCGGACACACCATCACACT 59.244 50.000 0.00 0.00 38.90 3.55
394 395 0.865769 GTTCGGACACACCATCACAC 59.134 55.000 0.00 0.00 38.90 3.82
395 396 0.466124 TGTTCGGACACACCATCACA 59.534 50.000 0.00 0.00 38.90 3.58
396 397 1.732259 GATGTTCGGACACACCATCAC 59.268 52.381 0.00 0.00 38.91 3.06
397 398 1.346068 TGATGTTCGGACACACCATCA 59.654 47.619 0.00 0.00 39.51 3.07
398 399 2.093306 TGATGTTCGGACACACCATC 57.907 50.000 0.00 0.00 38.91 3.51
399 400 2.787473 ATGATGTTCGGACACACCAT 57.213 45.000 0.00 0.09 38.91 3.55
400 401 3.007506 AGTTATGATGTTCGGACACACCA 59.992 43.478 0.00 0.00 38.91 4.17
401 402 3.370978 CAGTTATGATGTTCGGACACACC 59.629 47.826 0.00 0.00 38.91 4.16
402 403 3.181520 GCAGTTATGATGTTCGGACACAC 60.182 47.826 0.00 0.00 38.91 3.82
403 404 3.000041 GCAGTTATGATGTTCGGACACA 59.000 45.455 0.00 0.00 38.91 3.72
404 405 3.000041 TGCAGTTATGATGTTCGGACAC 59.000 45.455 0.00 0.00 38.91 3.67
405 406 3.000041 GTGCAGTTATGATGTTCGGACA 59.000 45.455 0.00 0.00 40.71 4.02
406 407 3.000041 TGTGCAGTTATGATGTTCGGAC 59.000 45.455 0.00 0.00 0.00 4.79
407 408 3.000041 GTGTGCAGTTATGATGTTCGGA 59.000 45.455 0.00 0.00 0.00 4.55
408 409 3.002791 AGTGTGCAGTTATGATGTTCGG 58.997 45.455 0.00 0.00 0.00 4.30
409 410 4.864806 AGTAGTGTGCAGTTATGATGTTCG 59.135 41.667 0.00 0.00 0.00 3.95
410 411 6.477033 CCTAGTAGTGTGCAGTTATGATGTTC 59.523 42.308 0.00 0.00 0.00 3.18
411 412 6.341316 CCTAGTAGTGTGCAGTTATGATGTT 58.659 40.000 0.00 0.00 0.00 2.71
412 413 5.163405 CCCTAGTAGTGTGCAGTTATGATGT 60.163 44.000 0.00 0.00 0.00 3.06
413 414 5.069119 TCCCTAGTAGTGTGCAGTTATGATG 59.931 44.000 0.00 0.00 0.00 3.07
414 415 5.208890 TCCCTAGTAGTGTGCAGTTATGAT 58.791 41.667 0.00 0.00 0.00 2.45
415 416 4.606210 TCCCTAGTAGTGTGCAGTTATGA 58.394 43.478 0.00 0.00 0.00 2.15
416 417 5.339008 TTCCCTAGTAGTGTGCAGTTATG 57.661 43.478 0.00 0.00 0.00 1.90
417 418 6.171213 GTTTTCCCTAGTAGTGTGCAGTTAT 58.829 40.000 0.00 0.00 0.00 1.89
418 419 5.511888 GGTTTTCCCTAGTAGTGTGCAGTTA 60.512 44.000 0.00 0.00 0.00 2.24
419 420 4.386711 GTTTTCCCTAGTAGTGTGCAGTT 58.613 43.478 0.00 0.00 0.00 3.16
420 421 3.244457 GGTTTTCCCTAGTAGTGTGCAGT 60.244 47.826 0.00 0.00 0.00 4.40
421 422 3.008049 AGGTTTTCCCTAGTAGTGTGCAG 59.992 47.826 0.00 0.00 43.87 4.41
422 423 2.976882 AGGTTTTCCCTAGTAGTGTGCA 59.023 45.455 0.00 0.00 43.87 4.57
423 424 3.697619 AGGTTTTCCCTAGTAGTGTGC 57.302 47.619 0.00 0.00 43.87 4.57
424 425 9.159364 GTTTATAAGGTTTTCCCTAGTAGTGTG 57.841 37.037 0.00 0.00 45.47 3.82
448 449 3.612860 CGCGCTACTGATAAACTTCTGTT 59.387 43.478 5.56 0.00 38.16 3.16
533 534 4.023021 CCCCTCGCTACTACTATCAACTTC 60.023 50.000 0.00 0.00 0.00 3.01
635 637 5.936686 CTACATACTTAGTAGTAGCGCCA 57.063 43.478 2.29 0.00 40.09 5.69
738 740 2.119484 GATGACGGTTGGTGGGGTGA 62.119 60.000 0.00 0.00 0.00 4.02
755 762 2.042930 GGGAGGGTGGAGTGGGAT 59.957 66.667 0.00 0.00 0.00 3.85
856 874 3.899545 GACGGGGGAGGTGAGGTCA 62.900 68.421 0.00 0.00 0.00 4.02
901 919 4.479993 GCAGATCTGGGCGCCTGT 62.480 66.667 28.56 9.89 0.00 4.00
975 994 2.203998 ACCCCCTCACTCCTGGTG 60.204 66.667 0.00 0.00 46.60 4.17
1014 1033 2.741092 GTGGTCTCCAGGAACGCA 59.259 61.111 0.00 0.00 41.44 5.24
1119 1138 3.390521 AGCACCTCGATGGCGGAA 61.391 61.111 0.00 0.00 40.22 4.30
1155 1174 1.444933 ACTTGAAGACACCCATGGGA 58.555 50.000 38.07 10.26 38.96 4.37
1423 1473 0.979665 AGAAGCAGAAGTAGCAGGCA 59.020 50.000 0.00 0.00 0.00 4.75
1481 1540 2.441023 CGATTCCGTCGTGCTTCAA 58.559 52.632 0.00 0.00 45.19 2.69
1534 1593 1.691976 CCGAGAGAGAGAGAGAGCCTA 59.308 57.143 0.00 0.00 0.00 3.93
1645 1718 1.745653 CGACAGAGCTACATCTCCACA 59.254 52.381 0.00 0.00 33.66 4.17
1661 1734 2.251371 CTCGACGACTGCACGACA 59.749 61.111 3.48 0.00 37.03 4.35
1712 1785 6.572898 GCAAGAAAATTTGATGACCCATGAGA 60.573 38.462 0.00 0.00 0.00 3.27
1985 2062 0.961019 GTCTCAGTTTTGGCATGCCA 59.039 50.000 35.59 35.59 45.63 4.92
1986 2063 0.109597 CGTCTCAGTTTTGGCATGCC 60.110 55.000 30.54 30.54 0.00 4.40
2220 2299 2.624029 GGTTGATGTTGATGTCCCCCAT 60.624 50.000 0.00 0.00 36.13 4.00
2336 2428 8.909141 AGGATGGATTGGATTCTTAATAGGAAT 58.091 33.333 0.00 0.00 36.29 3.01
2388 2482 9.920946 ATGTTAATATCCATAAAGAAGGTGTGT 57.079 29.630 0.00 0.00 0.00 3.72
2458 2552 4.519540 ACAAGTGCAAAGTCAAGTTTGT 57.480 36.364 10.99 0.00 39.27 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.