Multiple sequence alignment - TraesCS6B01G316900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G316900 chr6B 100.000 2792 0 0 1 2792 564661713 564658922 0.000000e+00 5156
1 TraesCS6B01G316900 chr6A 94.656 1553 55 14 827 2363 520051987 520050447 0.000000e+00 2383
2 TraesCS6B01G316900 chr6A 87.648 421 21 10 2391 2782 520050453 520050035 7.050000e-126 460
3 TraesCS6B01G316900 chr6A 87.879 165 20 0 325 489 520057134 520056970 7.890000e-46 195
4 TraesCS6B01G316900 chr6D 93.114 1612 68 13 728 2319 378264200 378262612 0.000000e+00 2322
5 TraesCS6B01G316900 chr6D 85.714 427 20 14 2388 2782 378262612 378262195 2.000000e-111 412
6 TraesCS6B01G316900 chr6D 89.697 165 17 0 325 489 378266662 378266498 7.840000e-51 211
7 TraesCS6B01G316900 chr6D 87.069 116 11 4 640 752 378266506 378266392 8.120000e-26 128
8 TraesCS6B01G316900 chr5A 86.503 326 43 1 1 325 43490713 43491038 9.510000e-95 357
9 TraesCS6B01G316900 chr5A 88.095 126 12 2 491 614 90609703 90609579 2.240000e-31 147
10 TraesCS6B01G316900 chr4B 95.364 151 7 0 491 641 517558843 517558693 9.990000e-60 241
11 TraesCS6B01G316900 chr4B 95.302 149 7 0 491 639 316520821 316520673 1.290000e-58 237
12 TraesCS6B01G316900 chr4B 93.243 148 6 2 491 638 447102092 447102235 6.060000e-52 215
13 TraesCS6B01G316900 chr4B 91.946 149 12 0 491 639 663901520 663901372 2.820000e-50 209
14 TraesCS6B01G316900 chr7B 92.617 149 11 0 491 639 566225368 566225516 6.060000e-52 215
15 TraesCS6B01G316900 chr3B 93.333 135 9 0 505 639 194277015 194277149 1.700000e-47 200
16 TraesCS6B01G316900 chr3B 91.912 136 11 0 491 626 194276883 194277018 1.020000e-44 191
17 TraesCS6B01G316900 chr3B 85.430 151 18 3 491 639 683440614 683440466 1.340000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G316900 chr6B 564658922 564661713 2791 True 5156.00 5156 100.0000 1 2792 1 chr6B.!!$R1 2791
1 TraesCS6B01G316900 chr6A 520050035 520051987 1952 True 1421.50 2383 91.1520 827 2782 2 chr6A.!!$R2 1955
2 TraesCS6B01G316900 chr6D 378262195 378266662 4467 True 768.25 2322 88.8985 325 2782 4 chr6D.!!$R1 2457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.031449 GAGCCAGCTCCATACTCGTC 59.969 60.0 8.51 0.0 37.11 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 4099 0.916358 AAGCACTCACCATAGCCCCT 60.916 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.119886 GAGCCAGCTCCATACTCGT 58.880 57.895 8.51 0.00 37.11 4.18
51 52 0.031449 GAGCCAGCTCCATACTCGTC 59.969 60.000 8.51 0.00 37.11 4.20
52 53 1.299468 GCCAGCTCCATACTCGTCG 60.299 63.158 0.00 0.00 0.00 5.12
53 54 1.299468 CCAGCTCCATACTCGTCGC 60.299 63.158 0.00 0.00 0.00 5.19
54 55 1.655654 CAGCTCCATACTCGTCGCG 60.656 63.158 0.00 0.00 0.00 5.87
55 56 3.025176 GCTCCATACTCGTCGCGC 61.025 66.667 0.00 0.00 0.00 6.86
56 57 2.353607 CTCCATACTCGTCGCGCC 60.354 66.667 0.00 0.00 0.00 6.53
57 58 3.825833 CTCCATACTCGTCGCGCCC 62.826 68.421 0.00 0.00 0.00 6.13
58 59 4.944372 CCATACTCGTCGCGCCCC 62.944 72.222 0.00 0.00 0.00 5.80
116 117 3.637273 GACCCGTGGCTTGGACCT 61.637 66.667 0.00 0.00 0.00 3.85
117 118 3.901797 GACCCGTGGCTTGGACCTG 62.902 68.421 0.00 0.00 0.00 4.00
125 126 4.431131 CTTGGACCTGCCCGGCAT 62.431 66.667 13.86 0.00 38.13 4.40
126 127 4.424711 TTGGACCTGCCCGGCATC 62.425 66.667 13.86 8.61 38.13 3.91
128 129 4.864334 GGACCTGCCCGGCATCAG 62.864 72.222 13.86 7.61 38.13 2.90
200 201 4.760047 CACCGGGAGCCGTGGAAG 62.760 72.222 6.32 0.00 46.80 3.46
257 258 3.764466 CGGGACTCGGCAAGCTCT 61.764 66.667 0.00 0.00 34.75 4.09
258 259 2.415608 CGGGACTCGGCAAGCTCTA 61.416 63.158 0.00 0.00 34.75 2.43
259 260 1.142097 GGGACTCGGCAAGCTCTAC 59.858 63.158 0.00 0.00 0.00 2.59
260 261 1.142097 GGACTCGGCAAGCTCTACC 59.858 63.158 0.00 0.00 0.00 3.18
261 262 1.605058 GGACTCGGCAAGCTCTACCA 61.605 60.000 0.00 0.00 0.00 3.25
262 263 0.458716 GACTCGGCAAGCTCTACCAC 60.459 60.000 0.00 0.00 0.00 4.16
263 264 0.900647 ACTCGGCAAGCTCTACCACT 60.901 55.000 0.00 0.00 0.00 4.00
264 265 0.459237 CTCGGCAAGCTCTACCACTG 60.459 60.000 0.00 0.00 0.00 3.66
265 266 1.185618 TCGGCAAGCTCTACCACTGT 61.186 55.000 0.00 0.00 0.00 3.55
266 267 1.016130 CGGCAAGCTCTACCACTGTG 61.016 60.000 0.00 0.00 0.00 3.66
267 268 0.035458 GGCAAGCTCTACCACTGTGT 59.965 55.000 7.08 0.00 0.00 3.72
268 269 1.151668 GCAAGCTCTACCACTGTGTG 58.848 55.000 7.08 1.06 0.00 3.82
269 270 1.541233 GCAAGCTCTACCACTGTGTGT 60.541 52.381 7.08 7.05 0.00 3.72
270 271 2.288825 GCAAGCTCTACCACTGTGTGTA 60.289 50.000 7.08 7.80 0.00 2.90
271 272 3.579709 CAAGCTCTACCACTGTGTGTAG 58.420 50.000 20.87 20.87 0.00 2.74
272 273 2.171840 AGCTCTACCACTGTGTGTAGG 58.828 52.381 23.82 18.48 0.00 3.18
273 274 1.204941 GCTCTACCACTGTGTGTAGGG 59.795 57.143 23.82 22.87 0.00 3.53
274 275 2.803956 CTCTACCACTGTGTGTAGGGA 58.196 52.381 21.77 11.42 0.00 4.20
275 276 3.162666 CTCTACCACTGTGTGTAGGGAA 58.837 50.000 21.77 10.78 0.00 3.97
276 277 3.769844 CTCTACCACTGTGTGTAGGGAAT 59.230 47.826 21.77 0.00 0.00 3.01
277 278 3.767673 TCTACCACTGTGTGTAGGGAATC 59.232 47.826 23.82 0.00 0.00 2.52
278 279 1.628846 ACCACTGTGTGTAGGGAATCC 59.371 52.381 7.08 0.00 0.00 3.01
279 280 1.065418 CCACTGTGTGTAGGGAATCCC 60.065 57.143 11.16 11.16 45.90 3.85
304 305 3.528370 CACTCCGCCGGACCCTAG 61.528 72.222 5.05 0.00 0.00 3.02
310 311 4.537433 GCCGGACCCTAGCAGCAG 62.537 72.222 5.05 0.00 0.00 4.24
311 312 3.077556 CCGGACCCTAGCAGCAGT 61.078 66.667 0.00 0.00 0.00 4.40
312 313 2.496817 CGGACCCTAGCAGCAGTC 59.503 66.667 0.00 0.00 0.00 3.51
313 314 2.055042 CGGACCCTAGCAGCAGTCT 61.055 63.158 0.00 0.00 0.00 3.24
314 315 1.819905 GGACCCTAGCAGCAGTCTC 59.180 63.158 0.00 0.00 0.00 3.36
315 316 1.435515 GACCCTAGCAGCAGTCTCG 59.564 63.158 0.00 0.00 0.00 4.04
316 317 2.010582 GACCCTAGCAGCAGTCTCGG 62.011 65.000 0.00 0.00 0.00 4.63
317 318 2.105930 CCTAGCAGCAGTCTCGGC 59.894 66.667 0.00 0.00 0.00 5.54
318 319 2.714991 CCTAGCAGCAGTCTCGGCA 61.715 63.158 0.00 0.00 0.00 5.69
319 320 1.518133 CTAGCAGCAGTCTCGGCAC 60.518 63.158 0.00 0.00 0.00 5.01
320 321 2.218037 CTAGCAGCAGTCTCGGCACA 62.218 60.000 0.00 0.00 0.00 4.57
321 322 2.218037 TAGCAGCAGTCTCGGCACAG 62.218 60.000 0.00 0.00 0.00 3.66
322 323 2.653115 CAGCAGTCTCGGCACAGA 59.347 61.111 0.00 0.00 0.00 3.41
323 324 1.005748 CAGCAGTCTCGGCACAGAA 60.006 57.895 0.00 0.00 0.00 3.02
329 330 1.478510 AGTCTCGGCACAGAACCATAG 59.521 52.381 0.00 0.00 0.00 2.23
334 335 4.404394 TCTCGGCACAGAACCATAGATTAA 59.596 41.667 0.00 0.00 0.00 1.40
389 390 5.104374 CCCAATGTCATGTTTTGATGTAGC 58.896 41.667 0.00 0.00 36.54 3.58
393 394 3.819902 TGTCATGTTTTGATGTAGCAGCA 59.180 39.130 0.00 0.00 36.54 4.41
397 398 2.813754 TGTTTTGATGTAGCAGCAGGAC 59.186 45.455 0.00 0.00 29.47 3.85
401 402 0.528684 GATGTAGCAGCAGGACGTCC 60.529 60.000 27.67 27.67 0.00 4.79
425 426 3.181483 ACGTTCGGCTATATCGGAAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
426 427 3.181774 CGTTCGGCTATATCGGAAGTTTG 59.818 47.826 0.00 0.00 0.00 2.93
435 436 6.368791 GCTATATCGGAAGTTTGTGATGCATA 59.631 38.462 0.00 0.00 0.00 3.14
440 441 5.523552 TCGGAAGTTTGTGATGCATATGTAG 59.476 40.000 0.00 0.00 0.00 2.74
457 458 9.073475 GCATATGTAGTATGAATTTGGGGTTTA 57.927 33.333 4.29 0.00 42.34 2.01
471 472 8.762481 ATTTGGGGTTTACTAATTGAGGTATC 57.238 34.615 0.00 0.00 0.00 2.24
473 474 7.133133 TGGGGTTTACTAATTGAGGTATCTC 57.867 40.000 0.00 0.00 40.36 2.75
480 481 6.525578 ACTAATTGAGGTATCTCGTGTGAA 57.474 37.500 0.00 0.00 42.79 3.18
481 482 6.931838 ACTAATTGAGGTATCTCGTGTGAAA 58.068 36.000 0.00 0.00 42.79 2.69
482 483 7.383687 ACTAATTGAGGTATCTCGTGTGAAAA 58.616 34.615 0.00 0.00 42.79 2.29
483 484 6.481954 AATTGAGGTATCTCGTGTGAAAAC 57.518 37.500 0.00 0.00 42.79 2.43
484 485 3.571571 TGAGGTATCTCGTGTGAAAACG 58.428 45.455 0.00 0.00 42.79 3.60
496 497 6.596717 CGTGTGAAAACGAATAGGAAATTG 57.403 37.500 0.00 0.00 46.49 2.32
497 498 5.059221 CGTGTGAAAACGAATAGGAAATTGC 59.941 40.000 0.00 0.00 46.49 3.56
498 499 6.149633 GTGTGAAAACGAATAGGAAATTGCT 58.850 36.000 0.00 0.00 0.00 3.91
499 500 6.305638 GTGTGAAAACGAATAGGAAATTGCTC 59.694 38.462 0.00 0.00 0.00 4.26
500 501 6.206634 TGTGAAAACGAATAGGAAATTGCTCT 59.793 34.615 0.00 0.00 0.00 4.09
501 502 6.524586 GTGAAAACGAATAGGAAATTGCTCTG 59.475 38.462 0.00 0.00 0.00 3.35
502 503 4.622701 AACGAATAGGAAATTGCTCTGC 57.377 40.909 0.00 0.00 0.00 4.26
503 504 3.609853 ACGAATAGGAAATTGCTCTGCA 58.390 40.909 0.00 0.00 36.47 4.41
504 505 4.202441 ACGAATAGGAAATTGCTCTGCAT 58.798 39.130 0.00 0.00 38.76 3.96
505 506 5.368145 ACGAATAGGAAATTGCTCTGCATA 58.632 37.500 0.00 0.00 38.76 3.14
506 507 5.237344 ACGAATAGGAAATTGCTCTGCATAC 59.763 40.000 0.00 0.00 38.76 2.39
507 508 5.613360 CGAATAGGAAATTGCTCTGCATACG 60.613 44.000 0.00 0.00 38.76 3.06
508 509 3.266510 AGGAAATTGCTCTGCATACGA 57.733 42.857 0.00 0.00 38.76 3.43
509 510 3.813443 AGGAAATTGCTCTGCATACGAT 58.187 40.909 0.00 0.00 38.76 3.73
510 511 4.202441 AGGAAATTGCTCTGCATACGATT 58.798 39.130 0.00 0.00 38.76 3.34
511 512 4.641989 AGGAAATTGCTCTGCATACGATTT 59.358 37.500 8.09 8.09 38.76 2.17
512 513 5.126061 AGGAAATTGCTCTGCATACGATTTT 59.874 36.000 9.22 0.00 38.76 1.82
513 514 5.807011 GGAAATTGCTCTGCATACGATTTTT 59.193 36.000 9.22 0.00 38.76 1.94
514 515 6.237648 GGAAATTGCTCTGCATACGATTTTTG 60.238 38.462 9.22 0.00 38.76 2.44
515 516 3.135414 TGCTCTGCATACGATTTTTGC 57.865 42.857 0.00 0.00 31.71 3.68
516 517 2.487372 TGCTCTGCATACGATTTTTGCA 59.513 40.909 0.00 0.00 43.63 4.08
517 518 3.129113 TGCTCTGCATACGATTTTTGCAT 59.871 39.130 0.00 0.00 44.65 3.96
518 519 3.484649 GCTCTGCATACGATTTTTGCATG 59.515 43.478 0.00 0.00 44.65 4.06
519 520 3.437428 TCTGCATACGATTTTTGCATGC 58.563 40.909 11.82 11.82 44.65 4.06
521 522 2.922387 TGCATACGATTTTTGCATGCAC 59.078 40.909 22.58 7.61 45.09 4.57
522 523 2.922387 GCATACGATTTTTGCATGCACA 59.078 40.909 22.58 12.14 41.25 4.57
523 524 3.367327 GCATACGATTTTTGCATGCACAA 59.633 39.130 22.58 18.48 41.25 3.33
524 525 4.033129 GCATACGATTTTTGCATGCACAAT 59.967 37.500 22.58 20.81 41.25 2.71
525 526 5.446206 GCATACGATTTTTGCATGCACAATT 60.446 36.000 22.58 16.57 41.25 2.32
526 527 6.535811 CATACGATTTTTGCATGCACAATTT 58.464 32.000 22.58 10.93 0.00 1.82
527 528 4.774586 ACGATTTTTGCATGCACAATTTG 58.225 34.783 22.58 20.82 0.00 2.32
528 529 4.272991 ACGATTTTTGCATGCACAATTTGT 59.727 33.333 22.58 21.44 0.00 2.83
529 530 4.841841 CGATTTTTGCATGCACAATTTGTC 59.158 37.500 22.58 14.06 0.00 3.18
530 531 4.548991 TTTTTGCATGCACAATTTGTCC 57.451 36.364 22.58 0.00 0.00 4.02
531 532 1.780806 TTGCATGCACAATTTGTCCG 58.219 45.000 22.58 0.00 0.00 4.79
532 533 0.957362 TGCATGCACAATTTGTCCGA 59.043 45.000 18.46 0.00 0.00 4.55
533 534 1.335780 TGCATGCACAATTTGTCCGAC 60.336 47.619 18.46 0.00 0.00 4.79
534 535 1.981254 CATGCACAATTTGTCCGACC 58.019 50.000 0.00 0.00 0.00 4.79
535 536 1.269174 CATGCACAATTTGTCCGACCA 59.731 47.619 0.00 0.00 0.00 4.02
536 537 1.393603 TGCACAATTTGTCCGACCAA 58.606 45.000 0.00 0.00 0.00 3.67
537 538 1.336440 TGCACAATTTGTCCGACCAAG 59.664 47.619 0.00 0.00 0.00 3.61
538 539 1.336755 GCACAATTTGTCCGACCAAGT 59.663 47.619 0.00 0.00 0.00 3.16
539 540 2.858260 GCACAATTTGTCCGACCAAGTG 60.858 50.000 10.32 10.32 0.00 3.16
540 541 2.616376 CACAATTTGTCCGACCAAGTGA 59.384 45.455 16.89 0.00 0.00 3.41
541 542 3.253188 CACAATTTGTCCGACCAAGTGAT 59.747 43.478 16.89 2.29 0.00 3.06
542 543 3.502211 ACAATTTGTCCGACCAAGTGATC 59.498 43.478 16.89 0.00 0.00 2.92
543 544 2.178912 TTTGTCCGACCAAGTGATCC 57.821 50.000 0.00 0.00 0.00 3.36
544 545 0.323629 TTGTCCGACCAAGTGATCCC 59.676 55.000 0.00 0.00 0.00 3.85
545 546 0.834261 TGTCCGACCAAGTGATCCCA 60.834 55.000 0.00 0.00 0.00 4.37
546 547 0.391263 GTCCGACCAAGTGATCCCAC 60.391 60.000 0.00 0.00 43.50 4.61
547 548 1.078426 CCGACCAAGTGATCCCACC 60.078 63.158 0.00 0.00 44.22 4.61
548 549 1.676968 CGACCAAGTGATCCCACCA 59.323 57.895 0.00 0.00 44.22 4.17
549 550 0.253044 CGACCAAGTGATCCCACCAT 59.747 55.000 0.00 0.00 44.22 3.55
550 551 1.340017 CGACCAAGTGATCCCACCATT 60.340 52.381 0.00 0.00 44.22 3.16
551 552 2.094675 GACCAAGTGATCCCACCATTG 58.905 52.381 0.00 0.00 44.22 2.82
552 553 0.819582 CCAAGTGATCCCACCATTGC 59.180 55.000 0.00 0.00 44.22 3.56
553 554 0.819582 CAAGTGATCCCACCATTGCC 59.180 55.000 0.00 0.00 44.22 4.52
554 555 0.680921 AAGTGATCCCACCATTGCCG 60.681 55.000 0.00 0.00 44.22 5.69
555 556 1.378514 GTGATCCCACCATTGCCGT 60.379 57.895 0.00 0.00 37.33 5.68
556 557 0.965363 GTGATCCCACCATTGCCGTT 60.965 55.000 0.00 0.00 37.33 4.44
557 558 0.964860 TGATCCCACCATTGCCGTTG 60.965 55.000 0.00 0.00 0.00 4.10
558 559 2.283472 GATCCCACCATTGCCGTTGC 62.283 60.000 0.00 0.00 38.26 4.17
559 560 2.786512 ATCCCACCATTGCCGTTGCT 62.787 55.000 0.00 0.00 38.71 3.91
560 561 2.259204 CCACCATTGCCGTTGCTG 59.741 61.111 0.00 0.00 38.71 4.41
561 562 2.431260 CACCATTGCCGTTGCTGC 60.431 61.111 0.00 0.00 38.71 5.25
562 563 2.911509 ACCATTGCCGTTGCTGCA 60.912 55.556 0.00 0.00 38.71 4.41
563 564 2.277591 ACCATTGCCGTTGCTGCAT 61.278 52.632 1.84 0.00 38.76 3.96
564 565 0.964860 ACCATTGCCGTTGCTGCATA 60.965 50.000 1.84 0.00 38.76 3.14
565 566 0.248743 CCATTGCCGTTGCTGCATAG 60.249 55.000 1.84 0.01 38.76 2.23
566 567 0.734309 CATTGCCGTTGCTGCATAGA 59.266 50.000 1.84 0.00 38.76 1.98
567 568 1.335810 CATTGCCGTTGCTGCATAGAT 59.664 47.619 1.84 0.00 38.76 1.98
568 569 1.462616 TTGCCGTTGCTGCATAGATT 58.537 45.000 1.84 0.00 38.76 2.40
569 570 1.462616 TGCCGTTGCTGCATAGATTT 58.537 45.000 1.84 0.00 38.71 2.17
570 571 1.132834 TGCCGTTGCTGCATAGATTTG 59.867 47.619 1.84 0.00 38.71 2.32
571 572 1.401552 GCCGTTGCTGCATAGATTTGA 59.598 47.619 1.84 0.00 33.53 2.69
572 573 2.033801 GCCGTTGCTGCATAGATTTGAT 59.966 45.455 1.84 0.00 33.53 2.57
573 574 3.851105 GCCGTTGCTGCATAGATTTGATC 60.851 47.826 1.84 0.00 33.53 2.92
574 575 3.538780 CGTTGCTGCATAGATTTGATCG 58.461 45.455 1.84 0.00 0.00 3.69
575 576 3.605461 CGTTGCTGCATAGATTTGATCGG 60.605 47.826 1.84 0.00 0.00 4.18
576 577 2.497138 TGCTGCATAGATTTGATCGGG 58.503 47.619 0.00 0.00 0.00 5.14
577 578 1.808945 GCTGCATAGATTTGATCGGGG 59.191 52.381 0.00 0.00 0.00 5.73
578 579 2.430465 CTGCATAGATTTGATCGGGGG 58.570 52.381 0.00 0.00 0.00 5.40
579 580 2.038952 CTGCATAGATTTGATCGGGGGA 59.961 50.000 0.00 0.00 0.00 4.81
580 581 2.644299 TGCATAGATTTGATCGGGGGAT 59.356 45.455 0.00 0.00 0.00 3.85
581 582 3.012518 GCATAGATTTGATCGGGGGATG 58.987 50.000 0.00 0.00 0.00 3.51
582 583 3.307691 GCATAGATTTGATCGGGGGATGA 60.308 47.826 0.00 0.00 0.00 2.92
583 584 4.511527 CATAGATTTGATCGGGGGATGAG 58.488 47.826 0.00 0.00 0.00 2.90
584 585 2.412591 AGATTTGATCGGGGGATGAGT 58.587 47.619 0.00 0.00 0.00 3.41
585 586 2.105477 AGATTTGATCGGGGGATGAGTG 59.895 50.000 0.00 0.00 0.00 3.51
586 587 1.578897 TTTGATCGGGGGATGAGTGA 58.421 50.000 0.00 0.00 0.00 3.41
587 588 1.578897 TTGATCGGGGGATGAGTGAA 58.421 50.000 0.00 0.00 0.00 3.18
588 589 0.830648 TGATCGGGGGATGAGTGAAC 59.169 55.000 0.00 0.00 0.00 3.18
589 590 0.830648 GATCGGGGGATGAGTGAACA 59.169 55.000 0.00 0.00 0.00 3.18
590 591 0.833287 ATCGGGGGATGAGTGAACAG 59.167 55.000 0.00 0.00 0.00 3.16
591 592 0.544357 TCGGGGGATGAGTGAACAGT 60.544 55.000 0.00 0.00 0.00 3.55
592 593 0.391661 CGGGGGATGAGTGAACAGTG 60.392 60.000 0.00 0.00 0.00 3.66
593 594 0.693049 GGGGGATGAGTGAACAGTGT 59.307 55.000 0.00 0.00 0.00 3.55
594 595 1.073923 GGGGGATGAGTGAACAGTGTT 59.926 52.381 8.61 8.61 0.00 3.32
595 596 2.427506 GGGGATGAGTGAACAGTGTTC 58.572 52.381 25.99 25.99 0.00 3.18
596 597 2.069273 GGGATGAGTGAACAGTGTTCG 58.931 52.381 26.59 0.00 0.00 3.95
597 598 2.548067 GGGATGAGTGAACAGTGTTCGT 60.548 50.000 26.59 18.38 0.00 3.85
598 599 3.305813 GGGATGAGTGAACAGTGTTCGTA 60.306 47.826 26.59 15.09 0.00 3.43
599 600 3.673809 GGATGAGTGAACAGTGTTCGTAC 59.326 47.826 26.59 20.74 0.00 3.67
600 601 3.786516 TGAGTGAACAGTGTTCGTACA 57.213 42.857 26.59 21.87 0.00 2.90
601 602 4.112716 TGAGTGAACAGTGTTCGTACAA 57.887 40.909 26.59 9.78 35.69 2.41
602 603 3.861113 TGAGTGAACAGTGTTCGTACAAC 59.139 43.478 26.59 19.51 35.69 3.32
603 604 2.855963 AGTGAACAGTGTTCGTACAACG 59.144 45.455 26.59 0.00 44.19 4.10
604 605 2.599973 GTGAACAGTGTTCGTACAACGT 59.400 45.455 26.59 0.00 43.14 3.99
605 606 2.853594 TGAACAGTGTTCGTACAACGTC 59.146 45.455 26.59 4.64 43.14 4.34
606 607 2.565210 ACAGTGTTCGTACAACGTCA 57.435 45.000 0.00 0.00 43.14 4.35
607 608 3.088194 ACAGTGTTCGTACAACGTCAT 57.912 42.857 0.00 0.00 43.14 3.06
608 609 4.227512 ACAGTGTTCGTACAACGTCATA 57.772 40.909 0.00 0.00 43.14 2.15
609 610 4.801891 ACAGTGTTCGTACAACGTCATAT 58.198 39.130 0.00 0.00 43.14 1.78
610 611 5.941733 ACAGTGTTCGTACAACGTCATATA 58.058 37.500 0.00 0.00 43.14 0.86
611 612 6.380995 ACAGTGTTCGTACAACGTCATATAA 58.619 36.000 0.00 0.00 43.14 0.98
612 613 6.525628 ACAGTGTTCGTACAACGTCATATAAG 59.474 38.462 0.00 0.00 43.14 1.73
613 614 6.744082 CAGTGTTCGTACAACGTCATATAAGA 59.256 38.462 0.00 0.00 43.14 2.10
614 615 7.431376 CAGTGTTCGTACAACGTCATATAAGAT 59.569 37.037 0.00 0.00 43.14 2.40
615 616 7.972277 AGTGTTCGTACAACGTCATATAAGATT 59.028 33.333 0.00 0.00 43.14 2.40
616 617 8.589629 GTGTTCGTACAACGTCATATAAGATTT 58.410 33.333 0.00 0.00 43.14 2.17
617 618 8.588789 TGTTCGTACAACGTCATATAAGATTTG 58.411 33.333 0.00 2.42 43.14 2.32
618 619 8.800972 GTTCGTACAACGTCATATAAGATTTGA 58.199 33.333 8.47 0.00 43.14 2.69
619 620 9.524106 TTCGTACAACGTCATATAAGATTTGAT 57.476 29.630 8.47 0.00 43.14 2.57
620 621 9.177304 TCGTACAACGTCATATAAGATTTGATC 57.823 33.333 8.47 0.00 43.14 2.92
621 622 8.147793 CGTACAACGTCATATAAGATTTGATCG 58.852 37.037 8.47 8.23 36.74 3.69
622 623 8.965172 GTACAACGTCATATAAGATTTGATCGT 58.035 33.333 8.47 0.00 33.47 3.73
624 625 8.965172 ACAACGTCATATAAGATTTGATCGTAC 58.035 33.333 8.47 0.00 32.64 3.67
625 626 7.777235 ACGTCATATAAGATTTGATCGTACG 57.223 36.000 9.53 9.53 31.92 3.67
626 627 6.304922 ACGTCATATAAGATTTGATCGTACGC 59.695 38.462 11.24 0.00 31.92 4.42
627 628 6.237227 CGTCATATAAGATTTGATCGTACGCC 60.237 42.308 11.24 5.45 0.00 5.68
628 629 6.807230 GTCATATAAGATTTGATCGTACGCCT 59.193 38.462 11.24 0.00 0.00 5.52
629 630 7.966753 GTCATATAAGATTTGATCGTACGCCTA 59.033 37.037 11.24 0.00 0.00 3.93
630 631 8.182227 TCATATAAGATTTGATCGTACGCCTAG 58.818 37.037 11.24 0.00 0.00 3.02
631 632 3.014604 AGATTTGATCGTACGCCTAGC 57.985 47.619 11.24 0.00 0.00 3.42
632 633 2.361119 AGATTTGATCGTACGCCTAGCA 59.639 45.455 11.24 0.00 0.00 3.49
633 634 1.917273 TTTGATCGTACGCCTAGCAC 58.083 50.000 11.24 0.00 0.00 4.40
634 635 1.100510 TTGATCGTACGCCTAGCACT 58.899 50.000 11.24 0.00 0.00 4.40
635 636 0.380733 TGATCGTACGCCTAGCACTG 59.619 55.000 11.24 0.00 0.00 3.66
636 637 0.935366 GATCGTACGCCTAGCACTGC 60.935 60.000 11.24 0.00 0.00 4.40
637 638 1.384989 ATCGTACGCCTAGCACTGCT 61.385 55.000 11.24 8.95 43.41 4.24
638 639 1.586564 CGTACGCCTAGCACTGCTC 60.587 63.158 6.86 0.00 40.44 4.26
673 674 2.733593 GTGACCGTCACTGTCCGC 60.734 66.667 22.08 0.00 43.73 5.54
730 733 3.916359 TGAATTTGGTGTATCCGGCTA 57.084 42.857 0.00 0.00 39.52 3.93
737 740 2.496070 TGGTGTATCCGGCTATAGATGC 59.504 50.000 3.21 0.00 39.52 3.91
758 2976 6.041423 TGCTTCTTACACATCTCATTCAGA 57.959 37.500 0.00 0.00 34.78 3.27
759 2977 6.104665 TGCTTCTTACACATCTCATTCAGAG 58.895 40.000 0.00 0.00 46.14 3.35
768 2986 4.341806 ACATCTCATTCAGAGGCAGTAGAG 59.658 45.833 0.00 0.00 44.81 2.43
785 3003 6.405397 GCAGTAGAGCTAGAAACTAGAAAGCT 60.405 42.308 9.58 2.79 45.82 3.74
792 3010 9.292846 GAGCTAGAAACTAGAAAGCTAAGTTAC 57.707 37.037 9.58 0.00 43.31 2.50
794 3012 9.292846 GCTAGAAACTAGAAAGCTAAGTTACTC 57.707 37.037 9.58 0.00 0.00 2.59
798 3016 9.571810 GAAACTAGAAAGCTAAGTTACTCTACC 57.428 37.037 0.00 0.00 0.00 3.18
800 3018 8.647256 ACTAGAAAGCTAAGTTACTCTACCAA 57.353 34.615 0.00 0.00 0.00 3.67
836 3057 2.941720 GGCCAATTTCAGCACAAAACAA 59.058 40.909 0.00 0.00 0.00 2.83
850 3071 4.262976 CACAAAACAAACTTTGCTCGTCTC 59.737 41.667 1.14 0.00 39.46 3.36
930 3151 0.878961 AAACACTCGTCGCCCTGTTC 60.879 55.000 3.47 0.00 0.00 3.18
1012 3233 0.888736 CGCAACAATGTCACTCCCCA 60.889 55.000 0.00 0.00 0.00 4.96
1063 3284 1.525077 CTCCTCCTCGTCCTCTCCG 60.525 68.421 0.00 0.00 0.00 4.63
1064 3285 2.260088 CTCCTCCTCGTCCTCTCCGT 62.260 65.000 0.00 0.00 0.00 4.69
1068 3289 2.179517 CTCGTCCTCTCCGTGTGC 59.820 66.667 0.00 0.00 0.00 4.57
1069 3290 3.669036 CTCGTCCTCTCCGTGTGCG 62.669 68.421 0.00 0.00 37.95 5.34
1098 3319 1.896183 CGCCACCCACAACATCACA 60.896 57.895 0.00 0.00 0.00 3.58
1161 3382 4.477975 CTCACGACGACGGGCCTC 62.478 72.222 12.58 0.00 43.22 4.70
1314 3535 1.527034 ACTACGACCACGACAAGCTA 58.473 50.000 0.00 0.00 42.66 3.32
1489 3710 2.048222 TGCTCTTCGTCAAGCCCG 60.048 61.111 3.86 0.00 37.73 6.13
1727 3948 1.352156 AAGAAGAACGGCGCGATCAC 61.352 55.000 12.10 2.26 31.23 3.06
1869 4099 2.559231 TCCTGCACGTGTCAGTATTACA 59.441 45.455 26.88 11.32 0.00 2.41
1874 4104 1.206371 ACGTGTCAGTATTACAGGGGC 59.794 52.381 0.00 0.00 37.12 5.80
1906 4136 7.039784 TGAGTGCTTTGATTAATTTGCTAGGTT 60.040 33.333 0.00 0.00 0.00 3.50
2162 4403 4.290969 GAGTTTTGCAAGCTACAAGTTCC 58.709 43.478 0.00 0.00 0.00 3.62
2172 4413 5.927281 AGCTACAAGTTCCTTCGGTTATA 57.073 39.130 0.00 0.00 0.00 0.98
2173 4414 6.481434 AGCTACAAGTTCCTTCGGTTATAT 57.519 37.500 0.00 0.00 0.00 0.86
2260 4503 6.532657 AGAATGATCGAAACAAAATTGATGGC 59.467 34.615 0.00 0.00 0.00 4.40
2322 4565 4.625607 ACAACTTTTAGAGGACCAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
2332 4575 0.110486 GGACCAGAGGGAGCAACAAA 59.890 55.000 0.00 0.00 38.05 2.83
2341 4584 0.746659 GGAGCAACAAAGCAGGTTGT 59.253 50.000 14.07 5.96 45.64 3.32
2342 4585 1.269257 GGAGCAACAAAGCAGGTTGTC 60.269 52.381 14.07 10.73 45.64 3.18
2343 4586 1.405105 GAGCAACAAAGCAGGTTGTCA 59.595 47.619 14.07 0.00 45.64 3.58
2344 4587 2.034124 AGCAACAAAGCAGGTTGTCAT 58.966 42.857 14.07 2.21 45.64 3.06
2345 4588 2.129607 GCAACAAAGCAGGTTGTCATG 58.870 47.619 14.07 6.27 45.64 3.07
2355 4598 0.538118 GGTTGTCATGCATGGCCAAT 59.462 50.000 27.59 0.00 0.00 3.16
2363 4606 3.962063 TCATGCATGGCCAATAATCAAGT 59.038 39.130 25.97 0.00 0.00 3.16
2364 4607 5.009911 GTCATGCATGGCCAATAATCAAGTA 59.990 40.000 25.97 0.00 0.00 2.24
2365 4608 5.776208 TCATGCATGGCCAATAATCAAGTAT 59.224 36.000 25.97 0.00 0.00 2.12
2366 4609 5.456548 TGCATGGCCAATAATCAAGTATG 57.543 39.130 10.96 0.00 0.00 2.39
2367 4610 4.240096 GCATGGCCAATAATCAAGTATGC 58.760 43.478 10.96 6.67 32.78 3.14
2368 4611 4.813027 CATGGCCAATAATCAAGTATGCC 58.187 43.478 10.96 0.00 38.13 4.40
2369 4612 3.230134 TGGCCAATAATCAAGTATGCCC 58.770 45.455 0.61 0.00 36.82 5.36
2370 4613 2.228822 GGCCAATAATCAAGTATGCCCG 59.771 50.000 0.00 0.00 0.00 6.13
2371 4614 2.884639 GCCAATAATCAAGTATGCCCGT 59.115 45.455 0.00 0.00 0.00 5.28
2372 4615 4.069304 GCCAATAATCAAGTATGCCCGTA 58.931 43.478 0.00 0.00 0.00 4.02
2373 4616 4.517453 GCCAATAATCAAGTATGCCCGTAA 59.483 41.667 0.00 0.00 0.00 3.18
2374 4617 5.183140 GCCAATAATCAAGTATGCCCGTAAT 59.817 40.000 0.00 0.00 0.00 1.89
2375 4618 6.611381 CCAATAATCAAGTATGCCCGTAATG 58.389 40.000 0.00 0.00 0.00 1.90
2376 4619 5.880054 ATAATCAAGTATGCCCGTAATGC 57.120 39.130 0.00 0.00 0.00 3.56
2377 4620 2.700722 TCAAGTATGCCCGTAATGCA 57.299 45.000 0.00 0.00 43.97 3.96
2378 4621 2.285083 TCAAGTATGCCCGTAATGCAC 58.715 47.619 0.00 0.00 42.38 4.57
2379 4622 2.093181 TCAAGTATGCCCGTAATGCACT 60.093 45.455 0.00 0.00 42.38 4.40
2380 4623 3.133183 TCAAGTATGCCCGTAATGCACTA 59.867 43.478 0.00 0.00 42.38 2.74
2381 4624 3.386768 AGTATGCCCGTAATGCACTAG 57.613 47.619 0.00 0.00 42.38 2.57
2382 4625 2.037251 AGTATGCCCGTAATGCACTAGG 59.963 50.000 0.00 0.00 42.38 3.02
2383 4626 1.128200 ATGCCCGTAATGCACTAGGA 58.872 50.000 0.00 0.00 42.38 2.94
2384 4627 0.464036 TGCCCGTAATGCACTAGGAG 59.536 55.000 0.00 0.00 32.85 3.69
2385 4628 0.464452 GCCCGTAATGCACTAGGAGT 59.536 55.000 0.00 0.00 0.00 3.85
2386 4629 1.134491 GCCCGTAATGCACTAGGAGTT 60.134 52.381 0.00 0.00 0.00 3.01
2387 4630 2.101917 GCCCGTAATGCACTAGGAGTTA 59.898 50.000 0.00 0.00 0.00 2.24
2388 4631 3.431207 GCCCGTAATGCACTAGGAGTTAA 60.431 47.826 0.00 0.00 0.00 2.01
2389 4632 4.742743 GCCCGTAATGCACTAGGAGTTAAT 60.743 45.833 0.00 0.00 0.00 1.40
2390 4633 5.510179 GCCCGTAATGCACTAGGAGTTAATA 60.510 44.000 0.00 0.00 0.00 0.98
2391 4634 6.518493 CCCGTAATGCACTAGGAGTTAATAA 58.482 40.000 0.00 0.00 0.00 1.40
2392 4635 7.159372 CCCGTAATGCACTAGGAGTTAATAAT 58.841 38.462 0.00 0.00 0.00 1.28
2393 4636 7.331193 CCCGTAATGCACTAGGAGTTAATAATC 59.669 40.741 0.00 0.00 0.00 1.75
2394 4637 7.870954 CCGTAATGCACTAGGAGTTAATAATCA 59.129 37.037 0.00 0.00 0.00 2.57
2395 4638 9.256477 CGTAATGCACTAGGAGTTAATAATCAA 57.744 33.333 0.00 0.00 0.00 2.57
2399 4642 9.686683 ATGCACTAGGAGTTAATAATCAAGTTT 57.313 29.630 0.00 0.00 0.00 2.66
2423 4666 1.764571 TTCCTACCAAGTGCCAGCGT 61.765 55.000 0.00 0.00 0.00 5.07
2511 4766 4.374702 GTTGAGCACGCACCGCAG 62.375 66.667 0.00 0.00 0.00 5.18
2512 4767 4.908687 TTGAGCACGCACCGCAGT 62.909 61.111 0.00 0.00 0.00 4.40
2516 4771 4.250431 GCACGCACCGCAGTGTTT 62.250 61.111 1.33 0.00 46.35 2.83
2517 4772 2.352229 CACGCACCGCAGTGTTTG 60.352 61.111 1.33 0.00 46.35 2.93
2621 4876 3.316283 CTCTTTGCCTCTCGAGCATATC 58.684 50.000 7.81 0.00 40.59 1.63
2644 4899 1.651240 GACAGCCGAGCACATGCATT 61.651 55.000 6.64 0.00 45.16 3.56
2675 4930 0.375454 CGACTGCGAGAGTGGAGTAG 59.625 60.000 0.00 0.00 40.92 2.57
2785 5063 1.867233 CAGTGTGACTGTGTTAGTGCC 59.133 52.381 0.00 0.00 41.19 5.01
2786 5064 1.202651 AGTGTGACTGTGTTAGTGCCC 60.203 52.381 0.00 0.00 40.53 5.36
2787 5065 0.833949 TGTGACTGTGTTAGTGCCCA 59.166 50.000 0.00 0.00 40.53 5.36
2788 5066 1.419762 TGTGACTGTGTTAGTGCCCAT 59.580 47.619 0.00 0.00 40.53 4.00
2789 5067 2.076863 GTGACTGTGTTAGTGCCCATC 58.923 52.381 0.00 0.00 40.53 3.51
2790 5068 1.696884 TGACTGTGTTAGTGCCCATCA 59.303 47.619 0.00 0.00 40.53 3.07
2791 5069 2.305635 TGACTGTGTTAGTGCCCATCAT 59.694 45.455 0.00 0.00 40.53 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.031449 GACGAGTATGGAGCTGGCTC 59.969 60.000 13.56 13.56 42.04 4.70
33 34 1.729470 CGACGAGTATGGAGCTGGCT 61.729 60.000 0.00 0.00 0.00 4.75
34 35 1.299468 CGACGAGTATGGAGCTGGC 60.299 63.158 0.00 0.00 0.00 4.85
35 36 1.299468 GCGACGAGTATGGAGCTGG 60.299 63.158 0.00 0.00 0.00 4.85
36 37 1.655654 CGCGACGAGTATGGAGCTG 60.656 63.158 0.00 0.00 0.00 4.24
37 38 2.716244 CGCGACGAGTATGGAGCT 59.284 61.111 0.00 0.00 0.00 4.09
38 39 3.025176 GCGCGACGAGTATGGAGC 61.025 66.667 12.10 0.00 0.00 4.70
39 40 2.353607 GGCGCGACGAGTATGGAG 60.354 66.667 12.10 0.00 0.00 3.86
40 41 3.896133 GGGCGCGACGAGTATGGA 61.896 66.667 12.10 0.00 0.00 3.41
41 42 4.944372 GGGGCGCGACGAGTATGG 62.944 72.222 12.10 0.00 0.00 2.74
99 100 3.637273 AGGTCCAAGCCACGGGTC 61.637 66.667 0.00 0.00 0.00 4.46
100 101 3.953775 CAGGTCCAAGCCACGGGT 61.954 66.667 0.00 0.00 0.00 5.28
108 109 4.431131 ATGCCGGGCAGGTCCAAG 62.431 66.667 27.62 0.00 43.65 3.61
109 110 4.424711 GATGCCGGGCAGGTCCAA 62.425 66.667 27.62 0.97 43.65 3.53
111 112 4.864334 CTGATGCCGGGCAGGTCC 62.864 72.222 27.62 15.70 43.65 4.46
240 241 2.415608 TAGAGCTTGCCGAGTCCCG 61.416 63.158 0.00 0.00 38.18 5.14
241 242 1.142097 GTAGAGCTTGCCGAGTCCC 59.858 63.158 0.00 0.00 0.00 4.46
242 243 1.142097 GGTAGAGCTTGCCGAGTCC 59.858 63.158 0.00 0.00 0.00 3.85
243 244 0.458716 GTGGTAGAGCTTGCCGAGTC 60.459 60.000 0.00 0.00 0.00 3.36
244 245 0.900647 AGTGGTAGAGCTTGCCGAGT 60.901 55.000 0.00 0.00 0.00 4.18
245 246 0.459237 CAGTGGTAGAGCTTGCCGAG 60.459 60.000 0.00 0.00 0.00 4.63
246 247 1.185618 ACAGTGGTAGAGCTTGCCGA 61.186 55.000 0.00 0.00 0.00 5.54
247 248 1.016130 CACAGTGGTAGAGCTTGCCG 61.016 60.000 0.00 0.00 0.00 5.69
248 249 0.035458 ACACAGTGGTAGAGCTTGCC 59.965 55.000 5.31 0.00 0.00 4.52
249 250 1.151668 CACACAGTGGTAGAGCTTGC 58.848 55.000 5.31 0.00 0.00 4.01
250 251 2.533266 ACACACAGTGGTAGAGCTTG 57.467 50.000 5.31 0.00 37.94 4.01
251 252 2.563179 CCTACACACAGTGGTAGAGCTT 59.437 50.000 21.74 0.00 37.94 3.74
252 253 2.171840 CCTACACACAGTGGTAGAGCT 58.828 52.381 21.74 0.00 37.94 4.09
253 254 1.204941 CCCTACACACAGTGGTAGAGC 59.795 57.143 21.74 0.00 37.94 4.09
254 255 2.803956 TCCCTACACACAGTGGTAGAG 58.196 52.381 21.74 13.83 37.94 2.43
255 256 2.984435 TCCCTACACACAGTGGTAGA 57.016 50.000 21.74 8.13 37.94 2.59
256 257 3.118738 GGATTCCCTACACACAGTGGTAG 60.119 52.174 16.59 16.59 37.94 3.18
257 258 2.835764 GGATTCCCTACACACAGTGGTA 59.164 50.000 5.31 3.85 37.94 3.25
258 259 1.628846 GGATTCCCTACACACAGTGGT 59.371 52.381 5.31 2.80 37.94 4.16
259 260 1.065418 GGGATTCCCTACACACAGTGG 60.065 57.143 14.98 0.00 41.34 4.00
260 261 1.405526 CGGGATTCCCTACACACAGTG 60.406 57.143 19.63 0.00 42.67 3.66
261 262 0.902531 CGGGATTCCCTACACACAGT 59.097 55.000 19.63 0.00 42.67 3.55
262 263 0.178068 CCGGGATTCCCTACACACAG 59.822 60.000 19.63 1.30 42.67 3.66
263 264 1.906105 GCCGGGATTCCCTACACACA 61.906 60.000 19.63 0.00 42.67 3.72
264 265 1.153229 GCCGGGATTCCCTACACAC 60.153 63.158 19.63 0.00 42.67 3.82
265 266 2.727392 CGCCGGGATTCCCTACACA 61.727 63.158 19.63 0.00 42.67 3.72
266 267 2.108362 CGCCGGGATTCCCTACAC 59.892 66.667 19.63 5.30 42.67 2.90
267 268 3.857038 GCGCCGGGATTCCCTACA 61.857 66.667 19.63 0.00 42.67 2.74
268 269 3.809374 CTGCGCCGGGATTCCCTAC 62.809 68.421 19.63 10.11 42.67 3.18
269 270 3.546543 CTGCGCCGGGATTCCCTA 61.547 66.667 19.63 0.50 42.67 3.53
287 288 3.528370 CTAGGGTCCGGCGGAGTG 61.528 72.222 31.98 13.63 29.39 3.51
293 294 4.537433 CTGCTGCTAGGGTCCGGC 62.537 72.222 0.00 0.00 0.00 6.13
294 295 3.077556 ACTGCTGCTAGGGTCCGG 61.078 66.667 0.00 0.00 0.00 5.14
295 296 2.010582 GAGACTGCTGCTAGGGTCCG 62.011 65.000 0.00 0.00 0.00 4.79
296 297 1.819905 GAGACTGCTGCTAGGGTCC 59.180 63.158 0.00 0.00 0.00 4.46
297 298 1.435515 CGAGACTGCTGCTAGGGTC 59.564 63.158 0.00 4.58 0.00 4.46
298 299 2.055042 CCGAGACTGCTGCTAGGGT 61.055 63.158 0.00 0.00 0.00 4.34
299 300 2.811101 CCGAGACTGCTGCTAGGG 59.189 66.667 0.00 0.00 0.00 3.53
300 301 2.105930 GCCGAGACTGCTGCTAGG 59.894 66.667 0.00 8.80 0.00 3.02
301 302 1.518133 GTGCCGAGACTGCTGCTAG 60.518 63.158 0.00 0.00 0.00 3.42
302 303 2.218037 CTGTGCCGAGACTGCTGCTA 62.218 60.000 0.00 0.00 0.00 3.49
303 304 3.586461 CTGTGCCGAGACTGCTGCT 62.586 63.158 0.00 0.00 0.00 4.24
304 305 3.117171 CTGTGCCGAGACTGCTGC 61.117 66.667 0.00 0.00 0.00 5.25
305 306 1.005748 TTCTGTGCCGAGACTGCTG 60.006 57.895 0.00 0.00 0.00 4.41
306 307 1.005630 GTTCTGTGCCGAGACTGCT 60.006 57.895 0.00 0.00 0.00 4.24
307 308 2.029844 GGTTCTGTGCCGAGACTGC 61.030 63.158 0.00 0.00 0.00 4.40
308 309 0.036952 ATGGTTCTGTGCCGAGACTG 60.037 55.000 0.00 0.00 0.00 3.51
309 310 1.478510 CTATGGTTCTGTGCCGAGACT 59.521 52.381 0.00 0.00 0.00 3.24
310 311 1.476891 TCTATGGTTCTGTGCCGAGAC 59.523 52.381 0.00 0.00 0.00 3.36
311 312 1.847328 TCTATGGTTCTGTGCCGAGA 58.153 50.000 0.00 0.00 0.00 4.04
312 313 2.898729 ATCTATGGTTCTGTGCCGAG 57.101 50.000 0.00 0.00 0.00 4.63
313 314 4.746535 TTAATCTATGGTTCTGTGCCGA 57.253 40.909 0.00 0.00 0.00 5.54
314 315 6.650807 ACATATTAATCTATGGTTCTGTGCCG 59.349 38.462 0.00 0.00 34.11 5.69
315 316 7.986085 ACATATTAATCTATGGTTCTGTGCC 57.014 36.000 0.00 0.00 34.11 5.01
342 343 7.163441 GGCTATCAAAATTGGGCATATTCAAT 58.837 34.615 0.00 0.00 35.37 2.57
354 355 6.342906 ACATGACATTGGGCTATCAAAATTG 58.657 36.000 0.00 0.00 0.00 2.32
401 402 0.514255 TCCGATATAGCCGAACGTCG 59.486 55.000 0.00 0.00 40.07 5.12
406 407 4.116961 CACAAACTTCCGATATAGCCGAA 58.883 43.478 0.00 0.00 0.00 4.30
407 408 3.382227 TCACAAACTTCCGATATAGCCGA 59.618 43.478 0.00 0.00 0.00 5.54
425 426 8.785946 CCAAATTCATACTACATATGCATCACA 58.214 33.333 0.19 0.00 40.62 3.58
426 427 8.239314 CCCAAATTCATACTACATATGCATCAC 58.761 37.037 0.19 0.00 40.62 3.06
457 458 6.525578 TTCACACGAGATACCTCAATTAGT 57.474 37.500 0.00 0.00 39.39 2.24
473 474 5.059221 GCAATTTCCTATTCGTTTTCACACG 59.941 40.000 0.00 0.00 41.78 4.49
480 481 4.458989 TGCAGAGCAATTTCCTATTCGTTT 59.541 37.500 0.00 0.00 34.76 3.60
481 482 4.009675 TGCAGAGCAATTTCCTATTCGTT 58.990 39.130 0.00 0.00 34.76 3.85
482 483 3.609853 TGCAGAGCAATTTCCTATTCGT 58.390 40.909 0.00 0.00 34.76 3.85
483 484 4.825546 ATGCAGAGCAATTTCCTATTCG 57.174 40.909 0.00 0.00 43.62 3.34
484 485 5.466728 TCGTATGCAGAGCAATTTCCTATTC 59.533 40.000 0.00 0.00 43.62 1.75
485 486 5.368145 TCGTATGCAGAGCAATTTCCTATT 58.632 37.500 0.00 0.00 43.62 1.73
486 487 4.960938 TCGTATGCAGAGCAATTTCCTAT 58.039 39.130 0.00 0.00 43.62 2.57
487 488 4.400529 TCGTATGCAGAGCAATTTCCTA 57.599 40.909 0.00 0.00 43.62 2.94
488 489 3.266510 TCGTATGCAGAGCAATTTCCT 57.733 42.857 0.00 0.00 43.62 3.36
489 490 4.558538 AATCGTATGCAGAGCAATTTCC 57.441 40.909 0.00 0.00 43.62 3.13
490 491 6.689547 CAAAAATCGTATGCAGAGCAATTTC 58.310 36.000 0.00 0.00 43.62 2.17
491 492 5.062558 GCAAAAATCGTATGCAGAGCAATTT 59.937 36.000 0.00 0.00 43.62 1.82
492 493 4.563976 GCAAAAATCGTATGCAGAGCAATT 59.436 37.500 0.00 0.00 43.62 2.32
493 494 4.107622 GCAAAAATCGTATGCAGAGCAAT 58.892 39.130 0.00 0.00 43.62 3.56
494 495 3.057666 TGCAAAAATCGTATGCAGAGCAA 60.058 39.130 0.00 0.00 44.52 3.91
495 496 2.487372 TGCAAAAATCGTATGCAGAGCA 59.513 40.909 0.00 0.00 44.52 4.26
496 497 3.135414 TGCAAAAATCGTATGCAGAGC 57.865 42.857 0.00 0.00 44.52 4.09
502 503 5.705813 ATTGTGCATGCAAAAATCGTATG 57.294 34.783 26.46 0.00 31.63 2.39
503 504 6.147492 ACAAATTGTGCATGCAAAAATCGTAT 59.853 30.769 26.46 6.85 31.63 3.06
504 505 5.464722 ACAAATTGTGCATGCAAAAATCGTA 59.535 32.000 26.46 3.57 31.63 3.43
505 506 4.272991 ACAAATTGTGCATGCAAAAATCGT 59.727 33.333 26.46 21.01 31.63 3.73
506 507 4.774586 ACAAATTGTGCATGCAAAAATCG 58.225 34.783 26.46 20.48 31.63 3.34
507 508 5.148568 GGACAAATTGTGCATGCAAAAATC 58.851 37.500 26.46 19.35 38.66 2.17
508 509 4.319622 CGGACAAATTGTGCATGCAAAAAT 60.320 37.500 26.46 22.38 38.73 1.82
509 510 3.002042 CGGACAAATTGTGCATGCAAAAA 59.998 39.130 26.46 21.20 38.73 1.94
510 511 2.543012 CGGACAAATTGTGCATGCAAAA 59.457 40.909 25.07 25.07 38.73 2.44
511 512 2.133553 CGGACAAATTGTGCATGCAAA 58.866 42.857 24.58 15.92 38.73 3.68
512 513 1.339291 TCGGACAAATTGTGCATGCAA 59.661 42.857 24.58 8.53 38.73 4.08
513 514 0.957362 TCGGACAAATTGTGCATGCA 59.043 45.000 18.46 18.46 38.73 3.96
514 515 1.339711 GTCGGACAAATTGTGCATGC 58.660 50.000 17.34 11.82 38.73 4.06
515 516 1.269174 TGGTCGGACAAATTGTGCATG 59.731 47.619 17.34 2.60 38.73 4.06
516 517 1.614996 TGGTCGGACAAATTGTGCAT 58.385 45.000 17.34 0.00 38.73 3.96
517 518 1.336440 CTTGGTCGGACAAATTGTGCA 59.664 47.619 17.34 2.49 38.73 4.57
518 519 1.336755 ACTTGGTCGGACAAATTGTGC 59.663 47.619 2.20 5.25 35.21 4.57
519 520 2.616376 TCACTTGGTCGGACAAATTGTG 59.384 45.455 2.20 11.68 0.00 3.33
520 521 2.925724 TCACTTGGTCGGACAAATTGT 58.074 42.857 13.38 0.00 0.00 2.71
521 522 3.119849 GGATCACTTGGTCGGACAAATTG 60.120 47.826 10.76 9.67 0.00 2.32
522 523 3.081804 GGATCACTTGGTCGGACAAATT 58.918 45.455 10.76 0.00 0.00 1.82
523 524 2.618045 GGGATCACTTGGTCGGACAAAT 60.618 50.000 10.76 0.00 0.00 2.32
524 525 1.271163 GGGATCACTTGGTCGGACAAA 60.271 52.381 10.76 3.91 0.00 2.83
525 526 0.323629 GGGATCACTTGGTCGGACAA 59.676 55.000 10.76 0.00 0.00 3.18
526 527 0.834261 TGGGATCACTTGGTCGGACA 60.834 55.000 10.76 0.00 0.00 4.02
527 528 0.391263 GTGGGATCACTTGGTCGGAC 60.391 60.000 0.00 0.00 40.58 4.79
528 529 1.550130 GGTGGGATCACTTGGTCGGA 61.550 60.000 0.00 0.00 43.17 4.55
529 530 1.078426 GGTGGGATCACTTGGTCGG 60.078 63.158 0.00 0.00 43.17 4.79
530 531 0.253044 ATGGTGGGATCACTTGGTCG 59.747 55.000 0.00 0.00 43.17 4.79
531 532 2.094675 CAATGGTGGGATCACTTGGTC 58.905 52.381 0.00 0.00 43.17 4.02
532 533 1.892329 GCAATGGTGGGATCACTTGGT 60.892 52.381 0.00 0.00 43.17 3.67
533 534 0.819582 GCAATGGTGGGATCACTTGG 59.180 55.000 0.00 0.00 43.17 3.61
534 535 0.819582 GGCAATGGTGGGATCACTTG 59.180 55.000 0.00 0.00 43.17 3.16
535 536 0.680921 CGGCAATGGTGGGATCACTT 60.681 55.000 0.00 0.00 43.17 3.16
536 537 1.077501 CGGCAATGGTGGGATCACT 60.078 57.895 0.00 0.00 43.17 3.41
537 538 0.965363 AACGGCAATGGTGGGATCAC 60.965 55.000 0.00 0.00 42.91 3.06
538 539 0.964860 CAACGGCAATGGTGGGATCA 60.965 55.000 0.00 0.00 0.00 2.92
539 540 1.809207 CAACGGCAATGGTGGGATC 59.191 57.895 0.00 0.00 0.00 3.36
540 541 2.350458 GCAACGGCAATGGTGGGAT 61.350 57.895 0.00 0.00 40.72 3.85
541 542 2.988684 GCAACGGCAATGGTGGGA 60.989 61.111 0.00 0.00 40.72 4.37
542 543 2.990967 AGCAACGGCAATGGTGGG 60.991 61.111 0.00 0.00 44.61 4.61
543 544 2.259204 CAGCAACGGCAATGGTGG 59.741 61.111 9.98 0.00 44.61 4.61
544 545 2.431260 GCAGCAACGGCAATGGTG 60.431 61.111 12.70 12.70 46.30 4.17
545 546 0.964860 TATGCAGCAACGGCAATGGT 60.965 50.000 0.00 0.00 45.60 3.55
546 547 0.248743 CTATGCAGCAACGGCAATGG 60.249 55.000 0.00 0.00 45.60 3.16
547 548 0.734309 TCTATGCAGCAACGGCAATG 59.266 50.000 0.00 0.00 45.60 2.82
548 549 1.683943 ATCTATGCAGCAACGGCAAT 58.316 45.000 0.00 0.00 45.60 3.56
549 550 1.462616 AATCTATGCAGCAACGGCAA 58.537 45.000 0.00 0.00 45.60 4.52
550 551 1.132834 CAAATCTATGCAGCAACGGCA 59.867 47.619 0.00 0.00 46.66 5.69
551 552 1.401552 TCAAATCTATGCAGCAACGGC 59.598 47.619 0.00 0.00 41.61 5.68
552 553 3.605461 CGATCAAATCTATGCAGCAACGG 60.605 47.826 0.00 0.00 0.00 4.44
553 554 3.538780 CGATCAAATCTATGCAGCAACG 58.461 45.455 0.00 0.00 0.00 4.10
554 555 3.304257 CCCGATCAAATCTATGCAGCAAC 60.304 47.826 0.00 0.00 0.00 4.17
555 556 2.880268 CCCGATCAAATCTATGCAGCAA 59.120 45.455 0.00 0.00 0.00 3.91
556 557 2.497138 CCCGATCAAATCTATGCAGCA 58.503 47.619 0.00 0.00 0.00 4.41
557 558 1.808945 CCCCGATCAAATCTATGCAGC 59.191 52.381 0.00 0.00 0.00 5.25
558 559 2.038952 TCCCCCGATCAAATCTATGCAG 59.961 50.000 0.00 0.00 0.00 4.41
559 560 2.054021 TCCCCCGATCAAATCTATGCA 58.946 47.619 0.00 0.00 0.00 3.96
560 561 2.859165 TCCCCCGATCAAATCTATGC 57.141 50.000 0.00 0.00 0.00 3.14
561 562 4.019860 ACTCATCCCCCGATCAAATCTATG 60.020 45.833 0.00 0.00 0.00 2.23
562 563 4.019860 CACTCATCCCCCGATCAAATCTAT 60.020 45.833 0.00 0.00 0.00 1.98
563 564 3.324846 CACTCATCCCCCGATCAAATCTA 59.675 47.826 0.00 0.00 0.00 1.98
564 565 2.105477 CACTCATCCCCCGATCAAATCT 59.895 50.000 0.00 0.00 0.00 2.40
565 566 2.104792 TCACTCATCCCCCGATCAAATC 59.895 50.000 0.00 0.00 0.00 2.17
566 567 2.126882 TCACTCATCCCCCGATCAAAT 58.873 47.619 0.00 0.00 0.00 2.32
567 568 1.578897 TCACTCATCCCCCGATCAAA 58.421 50.000 0.00 0.00 0.00 2.69
568 569 1.209504 GTTCACTCATCCCCCGATCAA 59.790 52.381 0.00 0.00 0.00 2.57
569 570 0.830648 GTTCACTCATCCCCCGATCA 59.169 55.000 0.00 0.00 0.00 2.92
570 571 0.830648 TGTTCACTCATCCCCCGATC 59.169 55.000 0.00 0.00 0.00 3.69
571 572 0.833287 CTGTTCACTCATCCCCCGAT 59.167 55.000 0.00 0.00 0.00 4.18
572 573 0.544357 ACTGTTCACTCATCCCCCGA 60.544 55.000 0.00 0.00 0.00 5.14
573 574 0.391661 CACTGTTCACTCATCCCCCG 60.392 60.000 0.00 0.00 0.00 5.73
574 575 0.693049 ACACTGTTCACTCATCCCCC 59.307 55.000 0.00 0.00 0.00 5.40
575 576 2.427506 GAACACTGTTCACTCATCCCC 58.572 52.381 15.77 0.00 0.00 4.81
576 577 2.069273 CGAACACTGTTCACTCATCCC 58.931 52.381 19.61 0.00 0.00 3.85
577 578 2.755650 ACGAACACTGTTCACTCATCC 58.244 47.619 19.61 0.00 0.00 3.51
578 579 4.295870 TGTACGAACACTGTTCACTCATC 58.704 43.478 19.61 6.27 0.00 2.92
579 580 4.316205 TGTACGAACACTGTTCACTCAT 57.684 40.909 19.61 4.43 0.00 2.90
580 581 3.786516 TGTACGAACACTGTTCACTCA 57.213 42.857 19.61 12.21 0.00 3.41
581 582 3.061403 CGTTGTACGAACACTGTTCACTC 60.061 47.826 19.61 10.22 46.05 3.51
582 583 2.855963 CGTTGTACGAACACTGTTCACT 59.144 45.455 19.61 8.14 46.05 3.41
583 584 2.599973 ACGTTGTACGAACACTGTTCAC 59.400 45.455 19.61 12.41 46.05 3.18
584 585 2.853594 GACGTTGTACGAACACTGTTCA 59.146 45.455 19.61 0.87 46.05 3.18
585 586 2.853594 TGACGTTGTACGAACACTGTTC 59.146 45.455 11.37 11.37 46.05 3.18
586 587 2.878580 TGACGTTGTACGAACACTGTT 58.121 42.857 6.19 0.00 46.05 3.16
587 588 2.565210 TGACGTTGTACGAACACTGT 57.435 45.000 6.19 0.00 46.05 3.55
588 589 6.744082 TCTTATATGACGTTGTACGAACACTG 59.256 38.462 6.19 0.00 46.05 3.66
589 590 6.845302 TCTTATATGACGTTGTACGAACACT 58.155 36.000 6.19 1.45 46.05 3.55
590 591 7.675270 ATCTTATATGACGTTGTACGAACAC 57.325 36.000 6.19 0.00 46.05 3.32
591 592 8.588789 CAAATCTTATATGACGTTGTACGAACA 58.411 33.333 6.19 6.33 46.05 3.18
592 593 8.800972 TCAAATCTTATATGACGTTGTACGAAC 58.199 33.333 6.19 0.99 46.05 3.95
593 594 8.914328 TCAAATCTTATATGACGTTGTACGAA 57.086 30.769 6.19 0.00 46.05 3.85
594 595 9.177304 GATCAAATCTTATATGACGTTGTACGA 57.823 33.333 6.19 0.00 46.05 3.43
596 597 8.965172 ACGATCAAATCTTATATGACGTTGTAC 58.035 33.333 0.00 0.00 31.66 2.90
598 599 8.965172 GTACGATCAAATCTTATATGACGTTGT 58.035 33.333 0.00 0.00 34.83 3.32
599 600 8.147793 CGTACGATCAAATCTTATATGACGTTG 58.852 37.037 10.44 6.38 34.83 4.10
600 601 7.149015 GCGTACGATCAAATCTTATATGACGTT 60.149 37.037 21.65 0.00 34.83 3.99
601 602 6.304922 GCGTACGATCAAATCTTATATGACGT 59.695 38.462 21.65 0.00 36.05 4.34
602 603 6.237227 GGCGTACGATCAAATCTTATATGACG 60.237 42.308 21.65 0.00 0.00 4.35
603 604 6.807230 AGGCGTACGATCAAATCTTATATGAC 59.193 38.462 21.65 0.00 0.00 3.06
604 605 6.920817 AGGCGTACGATCAAATCTTATATGA 58.079 36.000 21.65 0.00 0.00 2.15
605 606 7.043986 GCTAGGCGTACGATCAAATCTTATATG 60.044 40.741 21.65 0.00 0.00 1.78
606 607 6.973474 GCTAGGCGTACGATCAAATCTTATAT 59.027 38.462 21.65 0.00 0.00 0.86
607 608 6.072342 TGCTAGGCGTACGATCAAATCTTATA 60.072 38.462 21.65 0.00 0.00 0.98
608 609 5.162075 GCTAGGCGTACGATCAAATCTTAT 58.838 41.667 21.65 0.00 0.00 1.73
609 610 4.037089 TGCTAGGCGTACGATCAAATCTTA 59.963 41.667 21.65 0.00 0.00 2.10
610 611 3.181479 TGCTAGGCGTACGATCAAATCTT 60.181 43.478 21.65 0.00 0.00 2.40
611 612 2.361119 TGCTAGGCGTACGATCAAATCT 59.639 45.455 21.65 6.32 0.00 2.40
612 613 2.471743 GTGCTAGGCGTACGATCAAATC 59.528 50.000 21.65 0.00 0.00 2.17
613 614 2.100916 AGTGCTAGGCGTACGATCAAAT 59.899 45.455 21.65 0.00 33.01 2.32
614 615 1.475280 AGTGCTAGGCGTACGATCAAA 59.525 47.619 21.65 2.11 33.01 2.69
615 616 1.100510 AGTGCTAGGCGTACGATCAA 58.899 50.000 21.65 0.00 33.01 2.57
616 617 0.380733 CAGTGCTAGGCGTACGATCA 59.619 55.000 21.65 5.39 33.01 2.92
617 618 0.935366 GCAGTGCTAGGCGTACGATC 60.935 60.000 21.65 10.25 33.01 3.69
618 619 1.065928 GCAGTGCTAGGCGTACGAT 59.934 57.895 21.65 9.17 33.01 3.73
619 620 1.989966 GAGCAGTGCTAGGCGTACGA 61.990 60.000 19.77 0.00 39.88 3.43
620 621 1.586564 GAGCAGTGCTAGGCGTACG 60.587 63.158 19.77 11.84 39.88 3.67
621 622 0.108804 TTGAGCAGTGCTAGGCGTAC 60.109 55.000 19.77 4.01 39.88 3.67
622 623 0.606096 TTTGAGCAGTGCTAGGCGTA 59.394 50.000 19.77 0.00 39.88 4.42
623 624 0.951040 GTTTGAGCAGTGCTAGGCGT 60.951 55.000 19.77 0.00 39.88 5.68
624 625 1.790387 GTTTGAGCAGTGCTAGGCG 59.210 57.895 19.77 0.00 39.88 5.52
625 626 0.670546 TCGTTTGAGCAGTGCTAGGC 60.671 55.000 19.77 6.47 39.88 3.93
626 627 1.795768 TTCGTTTGAGCAGTGCTAGG 58.204 50.000 19.77 8.71 39.88 3.02
627 628 5.725110 AATATTCGTTTGAGCAGTGCTAG 57.275 39.130 19.77 7.60 39.88 3.42
628 629 5.641636 TCAAATATTCGTTTGAGCAGTGCTA 59.358 36.000 19.77 0.00 41.70 3.49
629 630 4.455533 TCAAATATTCGTTTGAGCAGTGCT 59.544 37.500 19.86 19.86 41.70 4.40
630 631 4.722194 TCAAATATTCGTTTGAGCAGTGC 58.278 39.130 7.13 7.13 41.70 4.40
637 638 5.180492 GGTCACACCTCAAATATTCGTTTGA 59.820 40.000 2.55 2.55 43.66 2.69
638 639 5.390613 GGTCACACCTCAAATATTCGTTTG 58.609 41.667 0.00 0.00 39.78 2.93
672 673 1.439353 ATGTGATTGGATGCGTCGGC 61.439 55.000 0.00 0.00 40.52 5.54
673 674 0.583438 GATGTGATTGGATGCGTCGG 59.417 55.000 0.00 0.00 0.00 4.79
678 679 8.882415 AAATTTCTATTGATGTGATTGGATGC 57.118 30.769 0.00 0.00 0.00 3.91
707 708 3.117888 AGCCGGATACACCAAATTCATCT 60.118 43.478 5.05 0.00 38.90 2.90
709 710 3.297134 AGCCGGATACACCAAATTCAT 57.703 42.857 5.05 0.00 38.90 2.57
711 712 5.790593 TCTATAGCCGGATACACCAAATTC 58.209 41.667 5.05 0.00 38.90 2.17
712 713 5.818678 TCTATAGCCGGATACACCAAATT 57.181 39.130 5.05 0.00 38.90 1.82
730 733 8.427276 TGAATGAGATGTGTAAGAAGCATCTAT 58.573 33.333 6.30 0.00 46.29 1.98
737 740 5.523188 GCCTCTGAATGAGATGTGTAAGAAG 59.477 44.000 0.00 0.00 45.39 2.85
758 2976 5.118729 TCTAGTTTCTAGCTCTACTGCCT 57.881 43.478 0.00 0.00 0.00 4.75
759 2977 5.838531 TTCTAGTTTCTAGCTCTACTGCC 57.161 43.478 0.00 0.00 0.00 4.85
768 2986 9.292846 GAGTAACTTAGCTTTCTAGTTTCTAGC 57.707 37.037 0.00 0.00 0.00 3.42
800 3018 1.917872 TGGCCACCGCTTCTATTTTT 58.082 45.000 0.00 0.00 34.44 1.94
836 3057 4.750460 TGCGAGACGAGCAAAGTT 57.250 50.000 0.00 0.00 42.18 2.66
947 3168 3.142174 CTCTGGTGTTCTTGGGAAGTTC 58.858 50.000 0.00 0.00 31.46 3.01
948 3169 2.158608 CCTCTGGTGTTCTTGGGAAGTT 60.159 50.000 0.00 0.00 31.46 2.66
1078 3299 1.599518 TGATGTTGTGGGTGGCGTC 60.600 57.895 0.00 0.00 0.00 5.19
1161 3382 1.340465 CTCGTTGATTTCGTCCGCG 59.660 57.895 0.00 0.00 39.92 6.46
1236 3457 4.807631 TCCCGCGGGAGATGACGA 62.808 66.667 42.66 19.15 39.76 4.20
1489 3710 1.870055 TTGTACGGCTCCTCGTGGAC 61.870 60.000 1.10 0.12 43.70 4.02
1749 3970 2.032681 AGGAACGCCAGAGCCAAC 59.967 61.111 0.00 0.00 36.29 3.77
1869 4099 0.916358 AAGCACTCACCATAGCCCCT 60.916 55.000 0.00 0.00 0.00 4.79
1874 4104 7.221452 GCAAATTAATCAAAGCACTCACCATAG 59.779 37.037 0.00 0.00 0.00 2.23
2004 4234 6.406370 CAGTTTATAACACCACCAGATCTGA 58.594 40.000 24.62 1.31 0.00 3.27
2090 4327 7.811117 ACTACATGAGAGTATACTCCAGAAC 57.189 40.000 25.93 14.24 43.88 3.01
2097 4334 8.085296 GCAGCAATTACTACATGAGAGTATACT 58.915 37.037 4.68 4.68 29.68 2.12
2229 4472 9.558648 CAATTTTGTTTCGATCATTCTATGTGA 57.441 29.630 0.00 0.00 0.00 3.58
2230 4473 9.558648 TCAATTTTGTTTCGATCATTCTATGTG 57.441 29.630 0.00 0.00 0.00 3.21
2260 4503 6.633500 TGGAAATTCAGAGTACAAGTTTGG 57.367 37.500 0.00 0.00 0.00 3.28
2322 4565 0.746659 ACAACCTGCTTTGTTGCTCC 59.253 50.000 11.70 0.00 45.42 4.70
2332 4575 1.601419 GCCATGCATGACAACCTGCT 61.601 55.000 28.31 0.00 38.23 4.24
2341 4584 3.962063 ACTTGATTATTGGCCATGCATGA 59.038 39.130 28.31 8.35 0.00 3.07
2342 4585 4.330944 ACTTGATTATTGGCCATGCATG 57.669 40.909 20.19 20.19 0.00 4.06
2343 4586 5.568023 GCATACTTGATTATTGGCCATGCAT 60.568 40.000 6.09 0.00 36.97 3.96
2344 4587 4.262121 GCATACTTGATTATTGGCCATGCA 60.262 41.667 6.09 0.00 36.97 3.96
2345 4588 4.240096 GCATACTTGATTATTGGCCATGC 58.760 43.478 6.09 4.78 0.00 4.06
2355 4598 4.513692 GTGCATTACGGGCATACTTGATTA 59.486 41.667 0.00 0.00 44.11 1.75
2363 4606 2.299013 CTCCTAGTGCATTACGGGCATA 59.701 50.000 0.00 0.00 44.11 3.14
2364 4607 1.070758 CTCCTAGTGCATTACGGGCAT 59.929 52.381 0.00 0.00 44.11 4.40
2365 4608 0.464036 CTCCTAGTGCATTACGGGCA 59.536 55.000 0.00 0.00 39.32 5.36
2366 4609 0.464452 ACTCCTAGTGCATTACGGGC 59.536 55.000 0.00 0.00 0.00 6.13
2367 4610 2.981859 AACTCCTAGTGCATTACGGG 57.018 50.000 0.00 0.00 0.00 5.28
2368 4611 7.870954 TGATTATTAACTCCTAGTGCATTACGG 59.129 37.037 0.00 0.00 0.00 4.02
2369 4612 8.812147 TGATTATTAACTCCTAGTGCATTACG 57.188 34.615 0.00 0.00 0.00 3.18
2372 4615 9.686683 AACTTGATTATTAACTCCTAGTGCATT 57.313 29.630 0.00 0.00 0.00 3.56
2373 4616 9.686683 AAACTTGATTATTAACTCCTAGTGCAT 57.313 29.630 0.00 0.00 0.00 3.96
2374 4617 9.515226 AAAACTTGATTATTAACTCCTAGTGCA 57.485 29.630 0.00 0.00 0.00 4.57
2399 4642 3.486383 CTGGCACTTGGTAGGAAGAAAA 58.514 45.455 0.00 0.00 0.00 2.29
2423 4666 7.686438 TTACGGGCATACTAGATCGTATTAA 57.314 36.000 0.00 0.00 33.98 1.40
2494 4745 4.374702 CTGCGGTGCGTGCTCAAC 62.375 66.667 0.00 0.00 0.00 3.18
2515 4770 1.372004 GCGCTCAGTTGCAATGCAA 60.372 52.632 17.55 17.55 46.80 4.08
2516 4771 2.256158 GCGCTCAGTTGCAATGCA 59.744 55.556 2.72 2.72 36.47 3.96
2517 4772 2.872925 CGCGCTCAGTTGCAATGC 60.873 61.111 5.56 0.00 0.00 3.56
2518 4773 2.186350 TTCCGCGCTCAGTTGCAATG 62.186 55.000 5.56 2.37 0.00 2.82
2519 4774 1.308069 ATTCCGCGCTCAGTTGCAAT 61.308 50.000 5.56 0.00 0.00 3.56
2546 4801 0.394565 ATCCGGGCAAAGCTAGCTAG 59.605 55.000 19.70 16.84 0.00 3.42
2621 4876 3.320879 ATGTGCTCGGCTGTCCCAG 62.321 63.158 0.00 0.00 34.12 4.45
2644 4899 2.580815 CAGTCGCAGGCATGAGGA 59.419 61.111 0.62 0.00 0.00 3.71
2654 4909 2.982744 CTCCACTCTCGCAGTCGCA 61.983 63.158 0.00 0.00 38.40 5.10
2768 5046 0.833949 TGGGCACTAACACAGTCACA 59.166 50.000 0.00 0.00 34.26 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.