Multiple sequence alignment - TraesCS6B01G316700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G316700 chr6B 100.000 2905 0 0 1 2905 564510179 564507275 0.000000e+00 5365
1 TraesCS6B01G316700 chr6B 80.000 520 70 21 840 1334 564569172 564568662 1.280000e-93 353
2 TraesCS6B01G316700 chr6A 92.063 2104 120 19 827 2897 519596520 519594431 0.000000e+00 2916
3 TraesCS6B01G316700 chr6A 94.595 407 14 3 427 830 519596951 519596550 8.840000e-175 623
4 TraesCS6B01G316700 chr6A 90.078 383 24 6 4 384 519597404 519597034 4.350000e-133 484
5 TraesCS6B01G316700 chr6A 80.682 528 55 27 840 1334 519950474 519949961 1.640000e-97 366
6 TraesCS6B01G316700 chr6D 94.874 1151 32 13 827 1950 377975683 377974533 0.000000e+00 1773
7 TraesCS6B01G316700 chr6D 89.379 499 49 4 2408 2902 377973888 377973390 2.460000e-175 625
8 TraesCS6B01G316700 chr6D 94.568 405 15 3 427 830 377976111 377975713 1.140000e-173 619
9 TraesCS6B01G316700 chr6D 87.990 383 36 5 2032 2406 377974522 377974142 7.390000e-121 444
10 TraesCS6B01G316700 chr6D 80.725 524 60 22 840 1334 378167868 378167357 1.270000e-98 370


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G316700 chr6B 564507275 564510179 2904 True 5365.00 5365 100.000000 1 2905 1 chr6B.!!$R1 2904
1 TraesCS6B01G316700 chr6B 564568662 564569172 510 True 353.00 353 80.000000 840 1334 1 chr6B.!!$R2 494
2 TraesCS6B01G316700 chr6A 519594431 519597404 2973 True 1341.00 2916 92.245333 4 2897 3 chr6A.!!$R2 2893
3 TraesCS6B01G316700 chr6A 519949961 519950474 513 True 366.00 366 80.682000 840 1334 1 chr6A.!!$R1 494
4 TraesCS6B01G316700 chr6D 377973390 377976111 2721 True 865.25 1773 91.702750 427 2902 4 chr6D.!!$R2 2475
5 TraesCS6B01G316700 chr6D 378167357 378167868 511 True 370.00 370 80.725000 840 1334 1 chr6D.!!$R1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 415 0.171903 GCCTTAGTGCATTGGCTGTG 59.828 55.0 12.76 0.0 41.92 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2158 0.170339 CGATGCACCGTCTGTCACTA 59.83 55.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.850935 TTTTAGATTGACGACCTAGGGATAT 57.149 36.000 14.81 0.00 0.00 1.63
56 57 6.494952 AGATTGACGACCTAGGGATATATGT 58.505 40.000 14.81 0.10 0.00 2.29
57 58 5.977489 TTGACGACCTAGGGATATATGTG 57.023 43.478 14.81 0.00 0.00 3.21
99 100 8.762481 AAACCAGAAAGGATGTAGTAGTTTTT 57.238 30.769 0.00 0.00 41.22 1.94
164 166 8.873215 ATAATGATATAATCCGATTCGACCAC 57.127 34.615 7.83 0.00 0.00 4.16
170 172 0.896479 TCCGATTCGACCACTGGTGA 60.896 55.000 5.10 0.85 35.25 4.02
185 187 6.039382 ACCACTGGTGAAATCTTTCTTACAAC 59.961 38.462 0.00 0.00 38.02 3.32
186 188 6.263168 CCACTGGTGAAATCTTTCTTACAACT 59.737 38.462 1.93 0.00 38.02 3.16
187 189 7.201821 CCACTGGTGAAATCTTTCTTACAACTT 60.202 37.037 1.93 0.00 38.02 2.66
188 190 7.857885 CACTGGTGAAATCTTTCTTACAACTTC 59.142 37.037 4.46 0.00 38.02 3.01
189 191 7.775561 ACTGGTGAAATCTTTCTTACAACTTCT 59.224 33.333 4.46 0.00 38.02 2.85
190 192 8.519799 TGGTGAAATCTTTCTTACAACTTCTT 57.480 30.769 4.46 0.00 38.02 2.52
191 193 9.621629 TGGTGAAATCTTTCTTACAACTTCTTA 57.378 29.630 4.46 0.00 38.02 2.10
192 194 9.880064 GGTGAAATCTTTCTTACAACTTCTTAC 57.120 33.333 4.46 0.00 38.02 2.34
241 243 7.124347 TCACTAAATGTCCATAAAACGTCAC 57.876 36.000 0.00 0.00 0.00 3.67
294 297 9.617975 GCAGATTATGAATAAAACCAGATTAGC 57.382 33.333 0.00 0.00 0.00 3.09
309 312 9.646522 AACCAGATTAGCAAAATAATACCTCAT 57.353 29.630 0.00 0.00 0.00 2.90
398 414 2.571548 GCCTTAGTGCATTGGCTGT 58.428 52.632 12.76 0.00 41.92 4.40
399 415 0.171903 GCCTTAGTGCATTGGCTGTG 59.828 55.000 12.76 0.00 41.92 3.66
401 417 1.888512 CCTTAGTGCATTGGCTGTGTT 59.111 47.619 0.00 0.00 41.91 3.32
402 418 2.095059 CCTTAGTGCATTGGCTGTGTTC 60.095 50.000 0.00 0.00 41.91 3.18
404 420 1.624336 AGTGCATTGGCTGTGTTCAT 58.376 45.000 0.00 0.00 41.91 2.57
405 421 1.271379 AGTGCATTGGCTGTGTTCATG 59.729 47.619 0.00 0.00 41.91 3.07
406 422 1.000060 GTGCATTGGCTGTGTTCATGT 60.000 47.619 0.00 0.00 41.91 3.21
407 423 1.687660 TGCATTGGCTGTGTTCATGTT 59.312 42.857 0.00 0.00 41.91 2.71
408 424 2.063266 GCATTGGCTGTGTTCATGTTG 58.937 47.619 0.00 0.00 36.96 3.33
409 425 2.679450 CATTGGCTGTGTTCATGTTGG 58.321 47.619 0.00 0.00 0.00 3.77
411 427 1.608055 TGGCTGTGTTCATGTTGGAG 58.392 50.000 0.00 0.00 0.00 3.86
412 428 1.142667 TGGCTGTGTTCATGTTGGAGA 59.857 47.619 0.00 0.00 0.00 3.71
413 429 1.537202 GGCTGTGTTCATGTTGGAGAC 59.463 52.381 0.00 0.00 0.00 3.36
415 431 2.225019 GCTGTGTTCATGTTGGAGACTG 59.775 50.000 0.00 0.00 0.00 3.51
416 432 3.470709 CTGTGTTCATGTTGGAGACTGT 58.529 45.455 0.00 0.00 0.00 3.55
417 433 3.205338 TGTGTTCATGTTGGAGACTGTG 58.795 45.455 0.00 0.00 0.00 3.66
419 435 3.627577 GTGTTCATGTTGGAGACTGTGTT 59.372 43.478 0.00 0.00 0.00 3.32
421 437 3.836365 TCATGTTGGAGACTGTGTTCA 57.164 42.857 0.00 0.00 0.00 3.18
422 438 3.732212 TCATGTTGGAGACTGTGTTCAG 58.268 45.455 0.00 0.00 46.18 3.02
557 600 1.140816 GAGGACGCACAAGTCAACTC 58.859 55.000 0.00 0.00 42.62 3.01
745 791 7.436673 AGACAGTAATCGCTTGCTAAAGATAAG 59.563 37.037 0.00 0.00 35.19 1.73
769 815 2.187599 ATTTGACTGCGAACGCCTGC 62.188 55.000 16.27 6.11 41.09 4.85
1021 1121 2.103647 ACAACGCGCACACACTGAA 61.104 52.632 5.73 0.00 0.00 3.02
1089 1189 2.416547 CAGCAAGAAACGTGGTATGGAG 59.583 50.000 0.00 0.00 0.00 3.86
1295 1415 1.306642 ACGTCAAGATCGCCGAGACT 61.307 55.000 0.00 0.00 0.00 3.24
1675 1795 3.371063 GACTCGTCGGCCACAGGA 61.371 66.667 2.24 0.00 0.00 3.86
1804 1931 1.375268 GAGCTGTCCCTGCAGTGTC 60.375 63.158 13.81 0.00 38.65 3.67
1807 1934 3.596066 CTGTCCCTGCAGTGTCCGG 62.596 68.421 13.81 6.28 0.00 5.14
1886 2033 8.643324 ACAGGGCAAAACAAATAAACACTATAA 58.357 29.630 0.00 0.00 0.00 0.98
1943 2091 6.591935 TGGGAGGTGATATTCTACAAACATC 58.408 40.000 0.00 0.00 0.00 3.06
1960 2110 8.273780 ACAAACATCCAAAAATTAAAGTGCAA 57.726 26.923 0.00 0.00 0.00 4.08
2017 2167 5.164620 TCCAAGCAATGAATAGTGACAGA 57.835 39.130 0.00 0.00 0.00 3.41
2027 2177 0.170339 TAGTGACAGACGGTGCATCG 59.830 55.000 19.79 19.79 0.00 3.84
2043 2193 5.455525 GGTGCATCGCTATTCATGTAAAAAC 59.544 40.000 0.00 0.00 0.00 2.43
2068 2218 9.323985 ACAATCTTAGCTCTCAAAGATATTGTC 57.676 33.333 9.37 0.00 40.66 3.18
2079 2229 7.444183 TCTCAAAGATATTGTCGTTTGAACCTT 59.556 33.333 0.00 0.00 35.51 3.50
2089 2240 8.934507 TTGTCGTTTGAACCTTAAATTTCAAT 57.065 26.923 10.46 0.00 40.51 2.57
2092 2243 9.843874 GTCGTTTGAACCTTAAATTTCAATTTC 57.156 29.630 10.46 0.00 40.51 2.17
2189 2341 8.975410 TTCTATGAAATTCTCATTGCAACTTG 57.025 30.769 0.00 0.00 42.46 3.16
2251 2408 3.512033 ATGAACGTTAGGTGAGAGAGC 57.488 47.619 0.00 0.00 0.00 4.09
2291 2449 1.521457 CACACGTGGTGCAGTGAGT 60.521 57.895 21.57 0.00 41.36 3.41
2293 2451 1.227234 CACGTGGTGCAGTGAGTGA 60.227 57.895 7.95 0.00 40.56 3.41
2365 2524 8.821147 TTTTTCGCTTAGTTGTGAGTAGATTA 57.179 30.769 0.00 0.00 0.00 1.75
2376 2535 9.890629 AGTTGTGAGTAGATTATTTTAGCATCA 57.109 29.630 0.00 0.00 0.00 3.07
2467 2878 3.982332 AACATGTGTTGTTGCGATTTGCA 60.982 39.130 0.00 0.00 46.80 4.08
2476 2887 1.007849 GCGATTTGCAACCGGTTGT 60.008 52.632 39.71 25.40 45.45 3.32
2477 2888 1.274798 GCGATTTGCAACCGGTTGTG 61.275 55.000 39.71 23.55 45.45 3.33
2500 2911 0.168128 GGTCAAAACATTCGAGGGCG 59.832 55.000 0.00 0.00 39.35 6.13
2502 2913 0.035598 TCAAAACATTCGAGGGCGGA 59.964 50.000 0.00 0.00 38.28 5.54
2503 2914 0.168128 CAAAACATTCGAGGGCGGAC 59.832 55.000 0.00 0.00 38.28 4.79
2504 2915 1.296056 AAAACATTCGAGGGCGGACG 61.296 55.000 0.00 0.00 38.28 4.79
2515 2927 2.342648 GCGGACGAGAAGGGTGTT 59.657 61.111 0.00 0.00 0.00 3.32
2537 2949 6.646240 TGTTACGACATATGATGGATCACATG 59.354 38.462 10.38 6.38 44.91 3.21
2560 2972 2.234143 TGGATGAACGCATTTTGGTGA 58.766 42.857 0.00 0.00 34.11 4.02
2562 2974 3.257873 TGGATGAACGCATTTTGGTGAAT 59.742 39.130 0.00 0.00 34.11 2.57
2570 2982 2.926159 GCATTTTGGTGAATGTGACGGG 60.926 50.000 0.00 0.00 38.86 5.28
2572 2984 1.890876 TTTGGTGAATGTGACGGGAG 58.109 50.000 0.00 0.00 0.00 4.30
2574 2986 6.544497 CATTTTGGTGAATGTGACGGGAGTA 61.544 44.000 0.00 0.00 36.36 2.59
2586 2998 1.296056 CGGGAGTAAAGCAACGGGTG 61.296 60.000 0.00 0.00 0.00 4.61
2589 3001 1.589803 GAGTAAAGCAACGGGTGTGT 58.410 50.000 0.00 0.00 0.00 3.72
2591 3003 1.134340 AGTAAAGCAACGGGTGTGTGA 60.134 47.619 0.00 0.00 0.00 3.58
2629 3041 6.998074 CCACATGCCTAAATAAGAATAGGTGA 59.002 38.462 0.00 0.00 40.71 4.02
2740 3152 2.512056 TGGTTGGGAGACAGAAAAAGGA 59.488 45.455 0.00 0.00 0.00 3.36
2744 3156 2.639839 TGGGAGACAGAAAAAGGAGAGG 59.360 50.000 0.00 0.00 0.00 3.69
2773 3185 0.608640 GCCCGTATCTCCATGGTAGG 59.391 60.000 12.58 7.21 0.00 3.18
2784 3196 6.381498 TCTCCATGGTAGGAATGTTTAACA 57.619 37.500 12.58 0.00 37.20 2.41
2786 3198 4.938832 TCCATGGTAGGAATGTTTAACACG 59.061 41.667 12.58 0.00 33.93 4.49
2787 3199 4.095782 CCATGGTAGGAATGTTTAACACGG 59.904 45.833 2.57 0.00 0.00 4.94
2822 3234 8.980481 AGTATTCCAGGACAAGGTAAATATTG 57.020 34.615 0.00 0.00 0.00 1.90
2833 3245 7.871853 ACAAGGTAAATATTGTGAACACTGAC 58.128 34.615 6.51 0.00 38.19 3.51
2834 3246 7.500892 ACAAGGTAAATATTGTGAACACTGACA 59.499 33.333 6.51 0.00 38.19 3.58
2850 3263 4.017808 ACTGACATCTTTACGCCTAGACT 58.982 43.478 0.00 0.00 0.00 3.24
2863 3276 2.704572 CCTAGACTGCCTGACTTTTGG 58.295 52.381 0.00 0.00 0.00 3.28
2867 3280 1.360393 ACTGCCTGACTTTTGGGGGA 61.360 55.000 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.711170 TCCCTAGGTCGTCAATCTAAAATAATT 58.289 33.333 8.29 0.00 0.00 1.40
30 31 8.114102 ACATATATCCCTAGGTCGTCAATCTAA 58.886 37.037 8.29 0.00 0.00 2.10
31 32 7.556635 CACATATATCCCTAGGTCGTCAATCTA 59.443 40.741 8.29 0.00 0.00 1.98
42 43 5.456921 AAATGCCCACATATATCCCTAGG 57.543 43.478 0.06 0.06 34.62 3.02
52 53 7.093684 GGTTTAAAGGTCTAAAATGCCCACATA 60.094 37.037 0.00 0.00 34.62 2.29
56 57 5.148502 TGGTTTAAAGGTCTAAAATGCCCA 58.851 37.500 0.00 0.00 0.00 5.36
57 58 5.479027 TCTGGTTTAAAGGTCTAAAATGCCC 59.521 40.000 0.00 0.00 0.00 5.36
137 139 9.961265 TGGTCGAATCGGATTATATCATTATAC 57.039 33.333 1.76 0.00 0.00 1.47
138 140 9.961265 GTGGTCGAATCGGATTATATCATTATA 57.039 33.333 1.76 0.00 0.00 0.98
139 141 8.696374 AGTGGTCGAATCGGATTATATCATTAT 58.304 33.333 1.76 0.00 0.00 1.28
140 142 7.973944 CAGTGGTCGAATCGGATTATATCATTA 59.026 37.037 1.76 0.00 0.00 1.90
141 143 6.813649 CAGTGGTCGAATCGGATTATATCATT 59.186 38.462 1.76 0.00 0.00 2.57
142 144 6.333416 CAGTGGTCGAATCGGATTATATCAT 58.667 40.000 1.76 0.00 0.00 2.45
159 161 5.763204 TGTAAGAAAGATTTCACCAGTGGTC 59.237 40.000 13.31 0.00 39.61 4.02
164 166 8.159344 AGAAGTTGTAAGAAAGATTTCACCAG 57.841 34.615 7.97 0.00 39.61 4.00
360 363 4.105858 AGGCTAAACAACCCCTCTTTAGTT 59.894 41.667 0.00 0.00 32.34 2.24
397 413 3.206150 ACACAGTCTCCAACATGAACAC 58.794 45.455 0.00 0.00 0.00 3.32
398 414 3.558931 ACACAGTCTCCAACATGAACA 57.441 42.857 0.00 0.00 0.00 3.18
399 415 3.876914 TGAACACAGTCTCCAACATGAAC 59.123 43.478 0.00 0.00 0.00 3.18
401 417 3.134623 ACTGAACACAGTCTCCAACATGA 59.865 43.478 0.00 0.00 40.30 3.07
402 418 3.249320 CACTGAACACAGTCTCCAACATG 59.751 47.826 0.00 0.00 42.09 3.21
404 420 2.499693 TCACTGAACACAGTCTCCAACA 59.500 45.455 0.00 0.00 42.09 3.33
405 421 3.179443 TCACTGAACACAGTCTCCAAC 57.821 47.619 0.00 0.00 42.09 3.77
406 422 3.904800 TTCACTGAACACAGTCTCCAA 57.095 42.857 0.00 0.00 42.09 3.53
407 423 3.904800 TTTCACTGAACACAGTCTCCA 57.095 42.857 0.00 0.00 42.09 3.86
408 424 4.386049 CGTATTTCACTGAACACAGTCTCC 59.614 45.833 0.00 0.00 42.09 3.71
409 425 4.143305 GCGTATTTCACTGAACACAGTCTC 60.143 45.833 0.00 0.00 42.09 3.36
411 427 3.493129 TGCGTATTTCACTGAACACAGTC 59.507 43.478 0.00 0.00 42.09 3.51
412 428 3.462982 TGCGTATTTCACTGAACACAGT 58.537 40.909 0.00 0.00 44.39 3.55
413 429 4.024893 ACTTGCGTATTTCACTGAACACAG 60.025 41.667 0.00 0.00 37.63 3.66
415 431 4.468095 ACTTGCGTATTTCACTGAACAC 57.532 40.909 0.00 0.00 0.00 3.32
416 432 4.572795 TGAACTTGCGTATTTCACTGAACA 59.427 37.500 0.00 0.00 0.00 3.18
417 433 5.090652 TGAACTTGCGTATTTCACTGAAC 57.909 39.130 0.00 0.00 0.00 3.18
419 435 4.378356 GCATGAACTTGCGTATTTCACTGA 60.378 41.667 0.00 0.00 32.21 3.41
421 437 4.083581 GCATGAACTTGCGTATTTCACT 57.916 40.909 0.00 0.00 32.21 3.41
479 522 3.443681 TCCCTCGCCTCAATTTCAATTTC 59.556 43.478 0.00 0.00 0.00 2.17
548 591 1.961277 CCGCTTGCGGAGTTGACTT 60.961 57.895 27.61 0.00 0.00 3.01
557 600 4.379243 AGGTCAGACCGCTTGCGG 62.379 66.667 29.32 29.32 44.90 5.69
569 612 2.355716 CCGCCTGGAAATTAAGAGGTCA 60.356 50.000 0.00 0.00 37.49 4.02
745 791 1.059835 GCGTTCGCAGTCAAATCTCTC 59.940 52.381 12.33 0.00 0.00 3.20
769 815 2.947621 GCACATCAATGCGCTGCG 60.948 61.111 19.17 19.17 35.50 5.18
1052 1152 1.760086 CTGCTCCCTCCCATCGTCT 60.760 63.158 0.00 0.00 0.00 4.18
1089 1189 1.300233 CGTAATCTCCCGGAGCAGC 60.300 63.158 9.87 0.00 0.00 5.25
1122 1228 8.191534 ACTACCATGAACAACTAGTAACTCTT 57.808 34.615 0.00 0.00 0.00 2.85
1295 1415 3.939939 TGGGTGAGCTGCTTCGCA 61.940 61.111 16.61 16.61 36.92 5.10
1423 1543 1.303888 TAGCTGTCGAACCCGAGGT 60.304 57.895 0.00 0.00 46.52 3.85
1658 1778 3.343788 CTCCTGTGGCCGACGAGTC 62.344 68.421 0.00 0.00 0.00 3.36
1804 1931 0.679505 ATCGTGGGTGATACATCCGG 59.320 55.000 0.00 0.00 37.47 5.14
1807 1934 6.465439 TGGATATATCGTGGGTGATACATC 57.535 41.667 6.64 0.00 35.14 3.06
1854 2000 7.492994 TGTTTATTTGTTTTGCCCTGTTTCTAC 59.507 33.333 0.00 0.00 0.00 2.59
1950 2100 8.619546 CCAAAGGATTTTGATTTTGCACTTTAA 58.380 29.630 1.80 0.00 45.21 1.52
2008 2158 0.170339 CGATGCACCGTCTGTCACTA 59.830 55.000 0.00 0.00 0.00 2.74
2017 2167 1.220529 CATGAATAGCGATGCACCGT 58.779 50.000 0.57 0.00 0.00 4.83
2043 2193 8.486383 CGACAATATCTTTGAGAGCTAAGATTG 58.514 37.037 13.33 10.38 41.62 2.67
2085 2236 8.579850 AAAGGTCATGTGCTATAAGAAATTGA 57.420 30.769 0.00 0.00 0.00 2.57
2086 2237 8.680903 AGAAAGGTCATGTGCTATAAGAAATTG 58.319 33.333 0.00 0.00 0.00 2.32
2089 2240 6.094048 GCAGAAAGGTCATGTGCTATAAGAAA 59.906 38.462 0.00 0.00 0.00 2.52
2092 2243 4.274459 GGCAGAAAGGTCATGTGCTATAAG 59.726 45.833 2.72 0.00 34.46 1.73
2176 2328 5.291178 TGATGAAAACCAAGTTGCAATGAG 58.709 37.500 0.59 0.00 0.00 2.90
2189 2341 9.626045 ATTCGAAGAAAGTATTTGATGAAAACC 57.374 29.630 3.35 0.00 45.90 3.27
2223 2375 8.158132 TCTCTCACCTAACGTTCATAGATATCT 58.842 37.037 10.73 10.73 0.00 1.98
2224 2376 8.325421 TCTCTCACCTAACGTTCATAGATATC 57.675 38.462 2.82 0.00 0.00 1.63
2238 2390 1.692762 GGGGGATGCTCTCTCACCTAA 60.693 57.143 0.00 0.00 0.00 2.69
2251 2408 1.900016 CATGTCGCCATGGGGGATG 60.900 63.158 27.02 22.94 46.03 3.51
2281 2439 4.388773 TGAACGAATAATCACTCACTGCAC 59.611 41.667 0.00 0.00 0.00 4.57
2322 2480 7.165318 AGCGAAAAAGACGAAAGAAAACAATAC 59.835 33.333 0.00 0.00 0.00 1.89
2464 2875 1.228003 CCTACCACAACCGGTTGCA 60.228 57.895 40.39 24.32 44.03 4.08
2467 2878 0.838608 TTGACCTACCACAACCGGTT 59.161 50.000 15.86 15.86 40.67 4.44
2476 2887 3.558321 CCCTCGAATGTTTTGACCTACCA 60.558 47.826 0.00 0.00 0.00 3.25
2477 2888 3.007635 CCCTCGAATGTTTTGACCTACC 58.992 50.000 0.00 0.00 0.00 3.18
2500 2911 0.883833 TCGTAACACCCTTCTCGTCC 59.116 55.000 0.00 0.00 0.00 4.79
2502 2913 1.321474 TGTCGTAACACCCTTCTCGT 58.679 50.000 0.00 0.00 0.00 4.18
2503 2914 2.649331 ATGTCGTAACACCCTTCTCG 57.351 50.000 0.00 0.00 38.48 4.04
2504 2915 5.258456 TCATATGTCGTAACACCCTTCTC 57.742 43.478 1.90 0.00 38.48 2.87
2537 2949 3.184178 CACCAAAATGCGTTCATCCAAAC 59.816 43.478 0.00 0.00 31.27 2.93
2560 2972 2.812011 GTTGCTTTACTCCCGTCACATT 59.188 45.455 0.00 0.00 0.00 2.71
2562 2974 1.870580 CGTTGCTTTACTCCCGTCACA 60.871 52.381 0.00 0.00 0.00 3.58
2570 2982 1.263217 CACACACCCGTTGCTTTACTC 59.737 52.381 0.00 0.00 0.00 2.59
2572 2984 1.003223 GTCACACACCCGTTGCTTTAC 60.003 52.381 0.00 0.00 0.00 2.01
2574 2986 1.381165 GGTCACACACCCGTTGCTTT 61.381 55.000 0.00 0.00 39.69 3.51
2629 3041 7.148018 CCAATGCAAGGTAAGAGACAATATGTT 60.148 37.037 0.00 0.00 0.00 2.71
2695 3107 3.508845 AACACATCTTGCTTAGGTGGT 57.491 42.857 4.97 0.00 39.45 4.16
2704 3116 3.319755 CCAACCATCAAACACATCTTGC 58.680 45.455 0.00 0.00 0.00 4.01
2740 3152 2.746375 CGGGCTATTGCACCCCTCT 61.746 63.158 4.59 0.00 43.86 3.69
2744 3156 0.396811 AGATACGGGCTATTGCACCC 59.603 55.000 0.66 0.00 40.04 4.61
2757 3169 4.873746 ACATTCCTACCATGGAGATACG 57.126 45.455 21.47 3.46 37.43 3.06
2773 3185 5.427036 TCAAGGTTCCGTGTTAAACATTC 57.573 39.130 4.88 0.00 27.83 2.67
2784 3196 4.324267 CTGGAATACTTTCAAGGTTCCGT 58.676 43.478 15.57 0.00 42.74 4.69
2822 3234 3.120649 GGCGTAAAGATGTCAGTGTTCAC 60.121 47.826 0.00 0.00 0.00 3.18
2833 3245 2.101582 AGGCAGTCTAGGCGTAAAGATG 59.898 50.000 0.00 0.00 39.37 2.90
2834 3246 2.101582 CAGGCAGTCTAGGCGTAAAGAT 59.898 50.000 0.00 0.00 39.37 2.40
2850 3263 1.460255 CTCCCCCAAAAGTCAGGCA 59.540 57.895 0.00 0.00 0.00 4.75
2863 3276 1.743394 CGTCAATAAGGTTTGCTCCCC 59.257 52.381 0.00 0.00 0.00 4.81
2867 3280 5.508200 TTGTTTCGTCAATAAGGTTTGCT 57.492 34.783 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.