Multiple sequence alignment - TraesCS6B01G316600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G316600 chr6B 100.000 2741 0 0 1 2741 564315162 564312422 0.000000e+00 5062
1 TraesCS6B01G316600 chr6D 96.014 1681 59 6 470 2144 377851158 377849480 0.000000e+00 2726
2 TraesCS6B01G316600 chr6D 87.667 600 38 10 2145 2741 377848633 377848067 0.000000e+00 665
3 TraesCS6B01G316600 chr6D 84.333 300 34 10 144 433 59071005 59070709 5.780000e-72 281
4 TraesCS6B01G316600 chr6A 95.313 1707 59 5 475 2161 519238939 519237234 0.000000e+00 2689
5 TraesCS6B01G316600 chr6A 89.313 131 7 6 1 124 519239107 519238977 1.020000e-34 158
6 TraesCS6B01G316600 chr7B 84.314 306 35 10 139 434 373751025 373750723 1.240000e-73 287
7 TraesCS6B01G316600 chr3D 84.158 303 36 9 140 432 336830569 336830269 1.610000e-72 283
8 TraesCS6B01G316600 chrUn 84.589 292 35 7 144 427 122420999 122421288 5.780000e-72 281
9 TraesCS6B01G316600 chr5B 84.642 293 33 9 144 427 100032312 100032023 5.780000e-72 281
10 TraesCS6B01G316600 chr1D 83.498 303 39 7 140 433 8517218 8517518 3.480000e-69 272
11 TraesCS6B01G316600 chr1D 83.667 300 37 9 142 432 334450035 334449739 3.480000e-69 272
12 TraesCS6B01G316600 chr1D 83.168 303 40 7 140 433 8479345 8479645 1.620000e-67 267
13 TraesCS6B01G316600 chr2A 83.389 301 38 9 145 435 405011181 405010883 4.500000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G316600 chr6B 564312422 564315162 2740 True 5062.0 5062 100.0000 1 2741 1 chr6B.!!$R1 2740
1 TraesCS6B01G316600 chr6D 377848067 377851158 3091 True 1695.5 2726 91.8405 470 2741 2 chr6D.!!$R2 2271
2 TraesCS6B01G316600 chr6A 519237234 519239107 1873 True 1423.5 2689 92.3130 1 2161 2 chr6A.!!$R1 2160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 173 0.042581 TCCCTCTGTCCAGGTGCATA 59.957 55.0 0.0 0.0 0.0 3.14 F
773 791 0.321298 AAGACGCCGCCACTTGTTAT 60.321 50.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1737 0.388520 CGAACGTCTGATGGTGCTCA 60.389 55.0 1.43 0.00 0.0 4.26 R
2518 3402 0.093535 CCGATATATTGCAGCGCGTG 59.906 55.0 8.43 6.12 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 7.707624 AAATGTCAGGATTTGCTAATTCTCA 57.292 32.000 0.00 0.00 26.25 3.27
87 89 5.780793 AGTGACATCTAACCTCTACACCTTT 59.219 40.000 0.00 0.00 0.00 3.11
143 151 9.900710 TGTATCTTTGCGTAAAATTAACAATGT 57.099 25.926 0.00 0.00 0.00 2.71
148 156 8.730970 TTTGCGTAAAATTAACAATGTACTCC 57.269 30.769 0.00 0.00 0.00 3.85
149 157 6.844254 TGCGTAAAATTAACAATGTACTCCC 58.156 36.000 0.00 0.00 0.00 4.30
150 158 6.655848 TGCGTAAAATTAACAATGTACTCCCT 59.344 34.615 0.00 0.00 0.00 4.20
151 159 7.148373 TGCGTAAAATTAACAATGTACTCCCTC 60.148 37.037 0.00 0.00 0.00 4.30
152 160 7.065443 GCGTAAAATTAACAATGTACTCCCTCT 59.935 37.037 0.00 0.00 0.00 3.69
155 163 7.923414 AAATTAACAATGTACTCCCTCTGTC 57.077 36.000 0.00 0.00 0.00 3.51
157 165 2.902608 ACAATGTACTCCCTCTGTCCA 58.097 47.619 0.00 0.00 0.00 4.02
158 166 2.834549 ACAATGTACTCCCTCTGTCCAG 59.165 50.000 0.00 0.00 0.00 3.86
161 169 1.187087 GTACTCCCTCTGTCCAGGTG 58.813 60.000 0.00 0.00 0.00 4.00
162 170 0.614979 TACTCCCTCTGTCCAGGTGC 60.615 60.000 0.00 0.00 0.00 5.01
163 171 1.915266 CTCCCTCTGTCCAGGTGCA 60.915 63.158 0.00 0.00 0.00 4.57
164 172 1.229625 TCCCTCTGTCCAGGTGCAT 60.230 57.895 0.00 0.00 0.00 3.96
165 173 0.042581 TCCCTCTGTCCAGGTGCATA 59.957 55.000 0.00 0.00 0.00 3.14
166 174 0.911769 CCCTCTGTCCAGGTGCATAA 59.088 55.000 0.00 0.00 0.00 1.90
167 175 1.134280 CCCTCTGTCCAGGTGCATAAG 60.134 57.143 0.00 0.00 0.00 1.73
168 176 1.556911 CCTCTGTCCAGGTGCATAAGT 59.443 52.381 0.00 0.00 0.00 2.24
169 177 2.419297 CCTCTGTCCAGGTGCATAAGTC 60.419 54.545 0.00 0.00 0.00 3.01
170 178 2.234661 CTCTGTCCAGGTGCATAAGTCA 59.765 50.000 0.00 0.00 0.00 3.41
171 179 2.840038 TCTGTCCAGGTGCATAAGTCAT 59.160 45.455 0.00 0.00 0.00 3.06
172 180 3.264193 TCTGTCCAGGTGCATAAGTCATT 59.736 43.478 0.00 0.00 0.00 2.57
173 181 4.012374 CTGTCCAGGTGCATAAGTCATTT 58.988 43.478 0.00 0.00 0.00 2.32
174 182 4.406456 TGTCCAGGTGCATAAGTCATTTT 58.594 39.130 0.00 0.00 0.00 1.82
175 183 5.565509 TGTCCAGGTGCATAAGTCATTTTA 58.434 37.500 0.00 0.00 0.00 1.52
176 184 5.647658 TGTCCAGGTGCATAAGTCATTTTAG 59.352 40.000 0.00 0.00 0.00 1.85
177 185 5.066505 GTCCAGGTGCATAAGTCATTTTAGG 59.933 44.000 0.00 0.00 0.00 2.69
178 186 4.949856 CCAGGTGCATAAGTCATTTTAGGT 59.050 41.667 0.00 0.00 0.00 3.08
179 187 5.418840 CCAGGTGCATAAGTCATTTTAGGTT 59.581 40.000 0.00 0.00 0.00 3.50
180 188 6.324819 CAGGTGCATAAGTCATTTTAGGTTG 58.675 40.000 0.00 0.00 0.00 3.77
181 189 6.010219 AGGTGCATAAGTCATTTTAGGTTGT 58.990 36.000 0.00 0.00 0.00 3.32
182 190 6.071952 AGGTGCATAAGTCATTTTAGGTTGTG 60.072 38.462 0.00 0.00 0.00 3.33
183 191 5.572896 GTGCATAAGTCATTTTAGGTTGTGC 59.427 40.000 0.00 0.00 36.22 4.57
184 192 5.242615 TGCATAAGTCATTTTAGGTTGTGCA 59.757 36.000 1.31 1.31 41.22 4.57
185 193 5.572896 GCATAAGTCATTTTAGGTTGTGCAC 59.427 40.000 10.75 10.75 35.86 4.57
193 201 3.047280 GGTTGTGCACCGCGATCA 61.047 61.111 15.69 0.00 35.12 2.92
194 202 2.612567 GGTTGTGCACCGCGATCAA 61.613 57.895 15.69 2.41 35.12 2.57
195 203 1.154413 GTTGTGCACCGCGATCAAG 60.154 57.895 15.69 0.00 0.00 3.02
196 204 1.301322 TTGTGCACCGCGATCAAGA 60.301 52.632 15.69 0.00 0.00 3.02
197 205 1.565156 TTGTGCACCGCGATCAAGAC 61.565 55.000 15.69 0.00 0.00 3.01
198 206 2.809174 TGCACCGCGATCAAGACG 60.809 61.111 8.23 0.00 0.00 4.18
199 207 2.506217 GCACCGCGATCAAGACGA 60.506 61.111 8.23 0.00 0.00 4.20
200 208 2.092291 GCACCGCGATCAAGACGAA 61.092 57.895 8.23 0.00 0.00 3.85
201 209 1.991430 CACCGCGATCAAGACGAAG 59.009 57.895 8.23 0.00 0.00 3.79
202 210 1.153823 ACCGCGATCAAGACGAAGG 60.154 57.895 8.23 0.00 36.64 3.46
203 211 1.138883 CCGCGATCAAGACGAAGGA 59.861 57.895 8.23 0.00 34.14 3.36
204 212 0.457853 CCGCGATCAAGACGAAGGAA 60.458 55.000 8.23 0.00 34.14 3.36
205 213 1.346365 CGCGATCAAGACGAAGGAAA 58.654 50.000 0.00 0.00 0.00 3.13
206 214 1.724623 CGCGATCAAGACGAAGGAAAA 59.275 47.619 0.00 0.00 0.00 2.29
207 215 2.472397 CGCGATCAAGACGAAGGAAAAC 60.472 50.000 0.00 0.00 0.00 2.43
208 216 2.472397 GCGATCAAGACGAAGGAAAACG 60.472 50.000 0.00 0.00 0.00 3.60
209 217 2.984471 CGATCAAGACGAAGGAAAACGA 59.016 45.455 0.00 0.00 0.00 3.85
210 218 3.059570 CGATCAAGACGAAGGAAAACGAG 59.940 47.826 0.00 0.00 0.00 4.18
211 219 3.720949 TCAAGACGAAGGAAAACGAGA 57.279 42.857 0.00 0.00 0.00 4.04
212 220 4.049546 TCAAGACGAAGGAAAACGAGAA 57.950 40.909 0.00 0.00 0.00 2.87
213 221 4.435425 TCAAGACGAAGGAAAACGAGAAA 58.565 39.130 0.00 0.00 0.00 2.52
214 222 4.871557 TCAAGACGAAGGAAAACGAGAAAA 59.128 37.500 0.00 0.00 0.00 2.29
215 223 5.526111 TCAAGACGAAGGAAAACGAGAAAAT 59.474 36.000 0.00 0.00 0.00 1.82
216 224 5.344207 AGACGAAGGAAAACGAGAAAATG 57.656 39.130 0.00 0.00 0.00 2.32
217 225 4.814771 AGACGAAGGAAAACGAGAAAATGT 59.185 37.500 0.00 0.00 0.00 2.71
218 226 5.296035 AGACGAAGGAAAACGAGAAAATGTT 59.704 36.000 0.00 0.00 0.00 2.71
219 227 5.886992 ACGAAGGAAAACGAGAAAATGTTT 58.113 33.333 0.00 0.00 39.84 2.83
220 228 7.011669 AGACGAAGGAAAACGAGAAAATGTTTA 59.988 33.333 0.00 0.00 37.31 2.01
221 229 7.645402 ACGAAGGAAAACGAGAAAATGTTTAT 58.355 30.769 0.00 0.00 37.31 1.40
222 230 8.132995 ACGAAGGAAAACGAGAAAATGTTTATT 58.867 29.630 0.00 0.00 37.31 1.40
223 231 8.417176 CGAAGGAAAACGAGAAAATGTTTATTG 58.583 33.333 0.00 0.00 37.31 1.90
224 232 9.458374 GAAGGAAAACGAGAAAATGTTTATTGA 57.542 29.630 0.00 0.00 37.31 2.57
225 233 8.797266 AGGAAAACGAGAAAATGTTTATTGAC 57.203 30.769 0.00 0.00 37.31 3.18
226 234 8.630037 AGGAAAACGAGAAAATGTTTATTGACT 58.370 29.630 0.00 0.00 37.31 3.41
227 235 9.887406 GGAAAACGAGAAAATGTTTATTGACTA 57.113 29.630 0.00 0.00 37.31 2.59
259 267 6.947903 CATTGCATGCAATAAACTAACACA 57.052 33.333 38.08 13.51 43.92 3.72
260 268 7.528481 CATTGCATGCAATAAACTAACACAT 57.472 32.000 38.08 15.85 43.92 3.21
261 269 7.966111 CATTGCATGCAATAAACTAACACATT 58.034 30.769 38.08 15.43 43.92 2.71
262 270 6.947903 TGCATGCAATAAACTAACACATTG 57.052 33.333 20.30 0.00 0.00 2.82
271 279 9.961266 CAATAAACTAACACATTGCATTTCATG 57.039 29.630 0.00 0.00 0.00 3.07
272 280 9.709495 AATAAACTAACACATTGCATTTCATGT 57.291 25.926 0.00 0.00 0.00 3.21
273 281 9.709495 ATAAACTAACACATTGCATTTCATGTT 57.291 25.926 0.00 3.84 32.18 2.71
274 282 8.436046 AAACTAACACATTGCATTTCATGTTT 57.564 26.923 0.00 1.91 30.58 2.83
275 283 7.410800 ACTAACACATTGCATTTCATGTTTG 57.589 32.000 0.00 4.88 30.58 2.93
276 284 7.208777 ACTAACACATTGCATTTCATGTTTGA 58.791 30.769 13.73 0.00 30.58 2.69
277 285 7.874016 ACTAACACATTGCATTTCATGTTTGAT 59.126 29.630 13.73 0.00 30.58 2.57
278 286 9.356433 CTAACACATTGCATTTCATGTTTGATA 57.644 29.630 0.00 0.00 30.58 2.15
279 287 7.821595 ACACATTGCATTTCATGTTTGATAG 57.178 32.000 0.00 0.00 0.00 2.08
280 288 7.380536 ACACATTGCATTTCATGTTTGATAGT 58.619 30.769 0.00 0.00 0.00 2.12
281 289 7.543172 ACACATTGCATTTCATGTTTGATAGTC 59.457 33.333 0.00 0.00 0.00 2.59
282 290 7.758076 CACATTGCATTTCATGTTTGATAGTCT 59.242 33.333 0.00 0.00 0.00 3.24
283 291 7.972277 ACATTGCATTTCATGTTTGATAGTCTC 59.028 33.333 0.00 0.00 0.00 3.36
284 292 7.451501 TTGCATTTCATGTTTGATAGTCTCA 57.548 32.000 0.00 0.00 0.00 3.27
285 293 7.451501 TGCATTTCATGTTTGATAGTCTCAA 57.548 32.000 0.00 0.00 42.15 3.02
298 306 7.926674 TGATAGTCTCAAATCATTGAAAGCA 57.073 32.000 0.00 0.00 44.64 3.91
299 307 8.515695 TGATAGTCTCAAATCATTGAAAGCAT 57.484 30.769 0.00 0.00 44.64 3.79
300 308 8.403236 TGATAGTCTCAAATCATTGAAAGCATG 58.597 33.333 0.00 0.00 44.64 4.06
301 309 5.408356 AGTCTCAAATCATTGAAAGCATGC 58.592 37.500 10.51 10.51 44.64 4.06
302 310 5.047590 AGTCTCAAATCATTGAAAGCATGCA 60.048 36.000 21.98 0.00 44.64 3.96
303 311 5.810587 GTCTCAAATCATTGAAAGCATGCAT 59.189 36.000 21.98 4.57 44.64 3.96
304 312 5.810074 TCTCAAATCATTGAAAGCATGCATG 59.190 36.000 22.70 22.70 44.64 4.06
305 313 5.483811 TCAAATCATTGAAAGCATGCATGT 58.516 33.333 26.79 11.76 42.47 3.21
306 314 5.579119 TCAAATCATTGAAAGCATGCATGTC 59.421 36.000 26.79 18.66 42.47 3.06
307 315 3.513680 TCATTGAAAGCATGCATGTCC 57.486 42.857 26.79 12.06 0.00 4.02
308 316 3.093814 TCATTGAAAGCATGCATGTCCT 58.906 40.909 26.79 14.19 0.00 3.85
309 317 4.271661 TCATTGAAAGCATGCATGTCCTA 58.728 39.130 26.79 11.29 0.00 2.94
310 318 4.096833 TCATTGAAAGCATGCATGTCCTAC 59.903 41.667 26.79 15.05 0.00 3.18
311 319 3.070476 TGAAAGCATGCATGTCCTACA 57.930 42.857 26.79 17.14 0.00 2.74
312 320 3.623703 TGAAAGCATGCATGTCCTACAT 58.376 40.909 26.79 7.62 39.91 2.29
313 321 3.628942 TGAAAGCATGCATGTCCTACATC 59.371 43.478 26.79 15.41 36.53 3.06
314 322 3.572632 AAGCATGCATGTCCTACATCT 57.427 42.857 26.79 10.60 36.53 2.90
315 323 3.123157 AGCATGCATGTCCTACATCTC 57.877 47.619 26.79 7.00 36.53 2.75
316 324 2.704596 AGCATGCATGTCCTACATCTCT 59.295 45.455 26.79 9.18 36.53 3.10
317 325 3.136077 AGCATGCATGTCCTACATCTCTT 59.864 43.478 26.79 0.00 36.53 2.85
318 326 4.346127 AGCATGCATGTCCTACATCTCTTA 59.654 41.667 26.79 0.00 36.53 2.10
319 327 5.012871 AGCATGCATGTCCTACATCTCTTAT 59.987 40.000 26.79 0.00 36.53 1.73
320 328 5.704515 GCATGCATGTCCTACATCTCTTATT 59.295 40.000 26.79 0.00 36.53 1.40
321 329 6.875726 GCATGCATGTCCTACATCTCTTATTA 59.124 38.462 26.79 0.00 36.53 0.98
322 330 7.064371 GCATGCATGTCCTACATCTCTTATTAG 59.936 40.741 26.79 0.00 36.53 1.73
323 331 7.603180 TGCATGTCCTACATCTCTTATTAGT 57.397 36.000 0.00 0.00 36.53 2.24
324 332 8.023021 TGCATGTCCTACATCTCTTATTAGTT 57.977 34.615 0.00 0.00 36.53 2.24
325 333 7.928167 TGCATGTCCTACATCTCTTATTAGTTG 59.072 37.037 0.00 0.00 36.53 3.16
326 334 8.144478 GCATGTCCTACATCTCTTATTAGTTGA 58.856 37.037 0.00 0.00 36.53 3.18
354 362 8.833231 TGTCTAGAAATAAGAAACAAGGTGAG 57.167 34.615 0.00 0.00 0.00 3.51
355 363 8.647796 TGTCTAGAAATAAGAAACAAGGTGAGA 58.352 33.333 0.00 0.00 0.00 3.27
356 364 9.145865 GTCTAGAAATAAGAAACAAGGTGAGAG 57.854 37.037 0.00 0.00 0.00 3.20
357 365 8.871125 TCTAGAAATAAGAAACAAGGTGAGAGT 58.129 33.333 0.00 0.00 0.00 3.24
358 366 9.495572 CTAGAAATAAGAAACAAGGTGAGAGTT 57.504 33.333 0.00 0.00 0.00 3.01
360 368 9.847224 AGAAATAAGAAACAAGGTGAGAGTTAA 57.153 29.630 0.00 0.00 0.00 2.01
363 371 9.574516 AATAAGAAACAAGGTGAGAGTTAATGT 57.425 29.630 0.00 0.00 0.00 2.71
365 373 7.964604 AGAAACAAGGTGAGAGTTAATGTAC 57.035 36.000 0.00 0.00 0.00 2.90
366 374 6.935208 AGAAACAAGGTGAGAGTTAATGTACC 59.065 38.462 0.00 0.00 0.00 3.34
367 375 4.817517 ACAAGGTGAGAGTTAATGTACCG 58.182 43.478 0.00 0.00 33.55 4.02
368 376 4.282703 ACAAGGTGAGAGTTAATGTACCGT 59.717 41.667 0.00 0.00 33.55 4.83
369 377 4.451629 AGGTGAGAGTTAATGTACCGTG 57.548 45.455 0.00 0.00 33.55 4.94
370 378 2.928116 GGTGAGAGTTAATGTACCGTGC 59.072 50.000 0.00 0.00 0.00 5.34
371 379 2.928116 GTGAGAGTTAATGTACCGTGCC 59.072 50.000 0.00 0.00 0.00 5.01
372 380 2.829720 TGAGAGTTAATGTACCGTGCCT 59.170 45.455 0.00 0.00 0.00 4.75
373 381 4.018490 TGAGAGTTAATGTACCGTGCCTA 58.982 43.478 0.00 0.00 0.00 3.93
374 382 4.463539 TGAGAGTTAATGTACCGTGCCTAA 59.536 41.667 0.00 0.00 0.00 2.69
375 383 5.007385 AGAGTTAATGTACCGTGCCTAAG 57.993 43.478 0.00 0.00 0.00 2.18
376 384 4.465305 AGAGTTAATGTACCGTGCCTAAGT 59.535 41.667 0.00 0.00 0.00 2.24
377 385 4.501071 AGTTAATGTACCGTGCCTAAGTG 58.499 43.478 0.00 0.00 0.00 3.16
378 386 4.020839 AGTTAATGTACCGTGCCTAAGTGT 60.021 41.667 0.00 0.00 0.00 3.55
379 387 3.412237 AATGTACCGTGCCTAAGTGTT 57.588 42.857 0.00 0.00 0.00 3.32
380 388 2.914695 TGTACCGTGCCTAAGTGTTT 57.085 45.000 0.00 0.00 0.00 2.83
381 389 2.758009 TGTACCGTGCCTAAGTGTTTC 58.242 47.619 0.00 0.00 0.00 2.78
382 390 1.723003 GTACCGTGCCTAAGTGTTTCG 59.277 52.381 0.00 0.00 0.00 3.46
383 391 0.390124 ACCGTGCCTAAGTGTTTCGA 59.610 50.000 0.00 0.00 0.00 3.71
384 392 1.068474 CCGTGCCTAAGTGTTTCGAG 58.932 55.000 0.00 0.00 0.00 4.04
385 393 1.336517 CCGTGCCTAAGTGTTTCGAGA 60.337 52.381 0.00 0.00 0.00 4.04
386 394 2.607187 CGTGCCTAAGTGTTTCGAGAT 58.393 47.619 0.00 0.00 0.00 2.75
387 395 2.993899 CGTGCCTAAGTGTTTCGAGATT 59.006 45.455 0.00 0.00 0.00 2.40
388 396 4.171005 CGTGCCTAAGTGTTTCGAGATTA 58.829 43.478 0.00 0.00 0.00 1.75
389 397 4.804139 CGTGCCTAAGTGTTTCGAGATTAT 59.196 41.667 0.00 0.00 0.00 1.28
390 398 5.291128 CGTGCCTAAGTGTTTCGAGATTATT 59.709 40.000 0.00 0.00 0.00 1.40
391 399 6.183360 CGTGCCTAAGTGTTTCGAGATTATTT 60.183 38.462 0.00 0.00 0.00 1.40
392 400 6.961554 GTGCCTAAGTGTTTCGAGATTATTTG 59.038 38.462 0.00 0.00 0.00 2.32
393 401 6.876789 TGCCTAAGTGTTTCGAGATTATTTGA 59.123 34.615 0.00 0.00 0.00 2.69
394 402 7.552687 TGCCTAAGTGTTTCGAGATTATTTGAT 59.447 33.333 0.00 0.00 0.00 2.57
395 403 8.398665 GCCTAAGTGTTTCGAGATTATTTGATT 58.601 33.333 0.00 0.00 0.00 2.57
400 408 9.965824 AGTGTTTCGAGATTATTTGATTTTTGT 57.034 25.926 0.00 0.00 0.00 2.83
421 429 9.575868 TTTTGTAAAGTGATTTATACACCTGGA 57.424 29.630 0.00 0.00 38.82 3.86
422 430 8.556213 TTGTAAAGTGATTTATACACCTGGAC 57.444 34.615 0.00 0.00 38.82 4.02
423 431 7.913789 TGTAAAGTGATTTATACACCTGGACT 58.086 34.615 0.00 0.00 38.82 3.85
424 432 7.822334 TGTAAAGTGATTTATACACCTGGACTG 59.178 37.037 0.00 0.00 38.82 3.51
425 433 6.620877 AAGTGATTTATACACCTGGACTGA 57.379 37.500 0.00 0.00 38.82 3.41
426 434 6.227298 AGTGATTTATACACCTGGACTGAG 57.773 41.667 0.00 0.00 38.82 3.35
427 435 5.958380 AGTGATTTATACACCTGGACTGAGA 59.042 40.000 0.00 0.00 38.82 3.27
428 436 6.440647 AGTGATTTATACACCTGGACTGAGAA 59.559 38.462 0.00 0.00 38.82 2.87
429 437 6.758886 GTGATTTATACACCTGGACTGAGAAG 59.241 42.308 0.00 0.00 32.84 2.85
430 438 6.440647 TGATTTATACACCTGGACTGAGAAGT 59.559 38.462 0.00 0.00 0.00 3.01
431 439 7.618117 TGATTTATACACCTGGACTGAGAAGTA 59.382 37.037 0.00 0.00 0.00 2.24
432 440 6.770746 TTATACACCTGGACTGAGAAGTAC 57.229 41.667 0.00 0.00 0.00 2.73
433 441 3.246416 ACACCTGGACTGAGAAGTACT 57.754 47.619 0.00 0.00 0.00 2.73
434 442 4.383931 ACACCTGGACTGAGAAGTACTA 57.616 45.455 0.00 0.00 0.00 1.82
435 443 4.080687 ACACCTGGACTGAGAAGTACTAC 58.919 47.826 0.00 0.00 0.00 2.73
436 444 4.079970 CACCTGGACTGAGAAGTACTACA 58.920 47.826 0.00 0.00 0.00 2.74
437 445 4.156922 CACCTGGACTGAGAAGTACTACAG 59.843 50.000 17.32 17.32 36.58 2.74
438 446 4.043059 ACCTGGACTGAGAAGTACTACAGA 59.957 45.833 22.53 7.52 34.88 3.41
439 447 5.010933 CCTGGACTGAGAAGTACTACAGAA 58.989 45.833 22.53 11.85 34.88 3.02
440 448 5.124776 CCTGGACTGAGAAGTACTACAGAAG 59.875 48.000 22.53 17.17 34.88 2.85
441 449 5.632118 TGGACTGAGAAGTACTACAGAAGT 58.368 41.667 22.53 12.41 42.62 3.01
442 450 6.069331 TGGACTGAGAAGTACTACAGAAGTT 58.931 40.000 22.53 7.83 39.80 2.66
443 451 7.229308 TGGACTGAGAAGTACTACAGAAGTTA 58.771 38.462 22.53 5.92 39.80 2.24
444 452 7.390996 TGGACTGAGAAGTACTACAGAAGTTAG 59.609 40.741 22.53 6.11 39.80 2.34
445 453 7.607223 GGACTGAGAAGTACTACAGAAGTTAGA 59.393 40.741 22.53 0.00 39.80 2.10
446 454 8.326680 ACTGAGAAGTACTACAGAAGTTAGAC 57.673 38.462 22.53 0.00 39.80 2.59
447 455 7.118101 ACTGAGAAGTACTACAGAAGTTAGACG 59.882 40.741 22.53 0.00 39.80 4.18
448 456 6.933521 TGAGAAGTACTACAGAAGTTAGACGT 59.066 38.462 0.00 0.00 39.80 4.34
449 457 7.095313 TGAGAAGTACTACAGAAGTTAGACGTG 60.095 40.741 0.00 0.00 39.80 4.49
450 458 6.933521 AGAAGTACTACAGAAGTTAGACGTGA 59.066 38.462 0.00 0.00 39.80 4.35
451 459 6.479095 AGTACTACAGAAGTTAGACGTGAC 57.521 41.667 0.00 0.00 39.80 3.67
452 460 6.229733 AGTACTACAGAAGTTAGACGTGACT 58.770 40.000 0.00 0.00 39.80 3.41
453 461 6.709846 AGTACTACAGAAGTTAGACGTGACTT 59.290 38.462 0.00 0.00 39.80 3.01
454 462 6.388435 ACTACAGAAGTTAGACGTGACTTT 57.612 37.500 0.00 0.00 36.31 2.66
455 463 7.502120 ACTACAGAAGTTAGACGTGACTTTA 57.498 36.000 0.00 0.00 36.31 1.85
456 464 8.108551 ACTACAGAAGTTAGACGTGACTTTAT 57.891 34.615 0.00 0.00 36.31 1.40
457 465 8.574737 ACTACAGAAGTTAGACGTGACTTTATT 58.425 33.333 0.00 0.00 36.31 1.40
460 468 9.189723 ACAGAAGTTAGACGTGACTTTATTAAC 57.810 33.333 0.00 0.00 36.31 2.01
461 469 9.408069 CAGAAGTTAGACGTGACTTTATTAACT 57.592 33.333 0.00 0.00 36.31 2.24
462 470 9.623350 AGAAGTTAGACGTGACTTTATTAACTC 57.377 33.333 0.00 0.00 36.31 3.01
463 471 9.623350 GAAGTTAGACGTGACTTTATTAACTCT 57.377 33.333 0.00 0.00 36.31 3.24
464 472 9.623350 AAGTTAGACGTGACTTTATTAACTCTC 57.377 33.333 0.00 0.00 32.43 3.20
465 473 8.790718 AGTTAGACGTGACTTTATTAACTCTCA 58.209 33.333 0.00 0.00 0.00 3.27
466 474 9.570488 GTTAGACGTGACTTTATTAACTCTCAT 57.430 33.333 0.00 0.00 0.00 2.90
503 512 4.821805 GCTAGCTGCACCCTAAATATCAAA 59.178 41.667 7.70 0.00 42.31 2.69
505 514 4.860022 AGCTGCACCCTAAATATCAAACT 58.140 39.130 1.02 0.00 0.00 2.66
536 545 4.557605 CGCATGCATCCAACGGCC 62.558 66.667 19.57 0.00 0.00 6.13
543 552 1.895798 TGCATCCAACGGCCATAAAAA 59.104 42.857 2.24 0.00 0.00 1.94
757 775 3.055094 GGAGCAGTAATTCACAGGGAAGA 60.055 47.826 0.00 0.00 39.30 2.87
771 789 2.203153 AAGACGCCGCCACTTGTT 60.203 55.556 0.00 0.00 0.00 2.83
773 791 0.321298 AAGACGCCGCCACTTGTTAT 60.321 50.000 0.00 0.00 0.00 1.89
781 799 1.247567 GCCACTTGTTATGCACAGGT 58.752 50.000 0.00 0.00 46.39 4.00
907 933 2.223548 GCACATCACAAAGAGCACACAA 60.224 45.455 0.00 0.00 0.00 3.33
909 935 2.358898 ACATCACAAAGAGCACACAACC 59.641 45.455 0.00 0.00 0.00 3.77
1119 1146 2.313172 GCTGATGCCGATCGCGAAT 61.313 57.895 15.24 0.00 42.08 3.34
1428 1455 2.417257 GCCGCCCATGATGCTCAAA 61.417 57.895 0.00 0.00 0.00 2.69
1543 1570 2.124736 ATCCGTTCCACATGCCGG 60.125 61.111 0.00 0.00 41.75 6.13
1876 1911 3.165318 CATTTGCCACGTTCGCGC 61.165 61.111 0.00 0.00 46.04 6.86
1877 1912 3.353836 ATTTGCCACGTTCGCGCT 61.354 55.556 5.56 0.00 46.04 5.92
1919 1954 8.021973 CACTGTTCGTGTAGTATCTTTCTAAGT 58.978 37.037 0.00 0.00 38.84 2.24
2010 2045 4.265893 GAGCACCATCGATCTATCTCCTA 58.734 47.826 0.00 0.00 0.00 2.94
2012 2047 5.080337 AGCACCATCGATCTATCTCCTAAA 58.920 41.667 0.00 0.00 0.00 1.85
2049 2084 0.744414 AGGGATCAAACCGTCATGCG 60.744 55.000 0.00 3.02 40.95 4.73
2065 2100 4.848299 GTCATGCGAATTCAAAGACTTGTC 59.152 41.667 6.22 0.00 33.94 3.18
2124 2159 1.745653 GCAGCTGGGGTTATTCTGAAC 59.254 52.381 17.12 0.00 0.00 3.18
2164 3045 4.870221 TGATGCTCGAAATCAAGTGATG 57.130 40.909 7.76 0.00 34.49 3.07
2174 3055 0.756294 TCAAGTGATGGTGGTGACGT 59.244 50.000 0.00 0.00 0.00 4.34
2178 3059 1.148310 GTGATGGTGGTGACGTTCAG 58.852 55.000 0.00 0.00 0.00 3.02
2180 3061 1.623311 TGATGGTGGTGACGTTCAGAT 59.377 47.619 0.00 0.00 0.00 2.90
2183 3064 0.736325 GGTGGTGACGTTCAGATCCG 60.736 60.000 0.00 0.00 0.00 4.18
2189 3070 0.179134 GACGTTCAGATCCGGGTCTG 60.179 60.000 34.85 34.85 45.51 3.51
2195 3076 1.075896 AGATCCGGGTCTGGAGGTC 60.076 63.158 18.79 0.00 42.45 3.85
2210 3091 3.248171 GTCTGTGATCGTCGCGGC 61.248 66.667 6.13 1.93 33.46 6.53
2211 3092 3.440415 TCTGTGATCGTCGCGGCT 61.440 61.111 9.90 0.00 33.46 5.52
2259 3140 1.540146 GCAAAATCCCTGCGTTTTGGT 60.540 47.619 11.20 0.00 42.58 3.67
2265 3146 2.051345 CTGCGTTTTGGTGGCGAC 60.051 61.111 0.00 0.00 0.00 5.19
2266 3147 3.855209 CTGCGTTTTGGTGGCGACG 62.855 63.158 0.00 0.00 38.45 5.12
2267 3148 4.676586 GCGTTTTGGTGGCGACGG 62.677 66.667 0.00 0.00 36.14 4.79
2269 3150 2.330041 GTTTTGGTGGCGACGGTG 59.670 61.111 0.00 0.00 0.00 4.94
2270 3151 2.902846 TTTTGGTGGCGACGGTGG 60.903 61.111 0.00 0.00 0.00 4.61
2324 3208 3.493503 GGAGTCGTTGTGGTTCTACTTTG 59.506 47.826 0.00 0.00 0.00 2.77
2339 3223 1.171308 CTTTGCATGACAGGGTCTGG 58.829 55.000 0.00 0.00 35.51 3.86
2352 3236 1.004394 GGGTCTGGGTTAAGGTCCTTG 59.996 57.143 14.84 0.00 0.00 3.61
2355 3239 3.409570 GTCTGGGTTAAGGTCCTTGTTC 58.590 50.000 14.84 4.43 0.00 3.18
2373 3257 1.080093 CGTTTCGGACTAGGCAGCA 60.080 57.895 0.00 0.00 0.00 4.41
2418 3302 7.774625 TCAATGATGCTAAATGTCTGGTTATCA 59.225 33.333 0.00 0.00 0.00 2.15
2515 3399 4.210832 GCGTTTAGTGAAAAGCAGAAGT 57.789 40.909 3.90 0.00 45.83 3.01
2516 3400 3.968724 GCGTTTAGTGAAAAGCAGAAGTG 59.031 43.478 3.90 0.00 45.83 3.16
2517 3401 4.527564 CGTTTAGTGAAAAGCAGAAGTGG 58.472 43.478 0.00 0.00 0.00 4.00
2518 3402 4.290969 GTTTAGTGAAAAGCAGAAGTGGC 58.709 43.478 0.00 0.00 0.00 5.01
2520 3404 1.678101 AGTGAAAAGCAGAAGTGGCAC 59.322 47.619 10.29 10.29 0.00 5.01
2521 3405 0.662619 TGAAAAGCAGAAGTGGCACG 59.337 50.000 12.71 0.00 0.00 5.34
2522 3406 0.661483 GAAAAGCAGAAGTGGCACGC 60.661 55.000 12.71 9.59 40.45 5.34
2535 3419 3.280532 GCACGCGCTGCAATATATC 57.719 52.632 22.75 0.00 46.29 1.63
2536 3420 0.517132 GCACGCGCTGCAATATATCG 60.517 55.000 22.75 0.00 46.29 2.92
2537 3421 0.093535 CACGCGCTGCAATATATCGG 59.906 55.000 5.73 0.00 0.00 4.18
2538 3422 1.059369 CGCGCTGCAATATATCGGC 59.941 57.895 5.56 3.09 0.00 5.54
2539 3423 1.625759 CGCGCTGCAATATATCGGCA 61.626 55.000 5.56 10.53 34.38 5.69
2540 3424 0.516877 GCGCTGCAATATATCGGCAA 59.483 50.000 0.00 0.00 37.06 4.52
2541 3425 1.069296 GCGCTGCAATATATCGGCAAA 60.069 47.619 0.00 0.00 37.06 3.68
2542 3426 2.843077 CGCTGCAATATATCGGCAAAG 58.157 47.619 11.72 6.46 37.06 2.77
2543 3427 2.224079 CGCTGCAATATATCGGCAAAGT 59.776 45.455 11.72 0.00 37.06 2.66
2546 3430 4.776743 CTGCAATATATCGGCAAAGTGTC 58.223 43.478 11.72 0.00 37.06 3.67
2562 3446 0.679505 TGTCTCGCCAAGTTGCTAGT 59.320 50.000 0.00 0.00 0.00 2.57
2583 3467 0.942410 CGTGAGGGTACACACAACCG 60.942 60.000 0.00 0.00 40.34 4.44
2602 3486 5.432885 ACCGTGTGTATTTTCCTTCAAAG 57.567 39.130 0.00 0.00 0.00 2.77
2609 3493 6.831353 TGTGTATTTTCCTTCAAAGAAGTGGA 59.169 34.615 6.08 0.00 0.00 4.02
2660 3544 1.810151 GGGCGTGTTTGCTATTCTTCA 59.190 47.619 0.00 0.00 34.52 3.02
2663 3547 2.159517 GCGTGTTTGCTATTCTTCAGGG 60.160 50.000 0.00 0.00 0.00 4.45
2672 3556 3.137360 GCTATTCTTCAGGGGTCTGGATT 59.863 47.826 0.00 0.00 41.23 3.01
2728 3612 3.905678 CGGGGTTGCCGCAAACAA 61.906 61.111 22.30 0.00 36.15 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.216423 AGCAAATCCTGACATTTATATGAGTCT 58.784 33.333 0.00 0.00 35.65 3.24
52 54 9.220767 GAGGTTAGATGTCACTTTGTTAATTCT 57.779 33.333 0.00 0.00 0.00 2.40
124 132 7.175293 AGGGAGTACATTGTTAATTTTACGCAA 59.825 33.333 0.00 0.00 0.00 4.85
125 133 6.655848 AGGGAGTACATTGTTAATTTTACGCA 59.344 34.615 0.00 0.00 0.00 5.24
129 137 9.444600 GACAGAGGGAGTACATTGTTAATTTTA 57.555 33.333 0.00 0.00 0.00 1.52
131 139 6.884836 GGACAGAGGGAGTACATTGTTAATTT 59.115 38.462 0.00 0.00 0.00 1.82
132 140 6.012858 TGGACAGAGGGAGTACATTGTTAATT 60.013 38.462 0.00 0.00 0.00 1.40
133 141 5.487488 TGGACAGAGGGAGTACATTGTTAAT 59.513 40.000 0.00 0.00 0.00 1.40
134 142 4.841813 TGGACAGAGGGAGTACATTGTTAA 59.158 41.667 0.00 0.00 0.00 2.01
137 145 2.834549 CTGGACAGAGGGAGTACATTGT 59.165 50.000 0.00 0.00 0.00 2.71
138 146 2.169352 CCTGGACAGAGGGAGTACATTG 59.831 54.545 0.00 0.00 0.00 2.82
140 148 1.362932 ACCTGGACAGAGGGAGTACAT 59.637 52.381 0.00 0.00 37.45 2.29
141 149 0.784495 ACCTGGACAGAGGGAGTACA 59.216 55.000 0.00 0.00 37.45 2.90
142 150 1.187087 CACCTGGACAGAGGGAGTAC 58.813 60.000 0.00 0.00 37.45 2.73
143 151 0.614979 GCACCTGGACAGAGGGAGTA 60.615 60.000 0.00 0.00 37.45 2.59
144 152 1.915769 GCACCTGGACAGAGGGAGT 60.916 63.158 0.00 0.00 37.45 3.85
145 153 1.270414 ATGCACCTGGACAGAGGGAG 61.270 60.000 0.00 0.00 37.45 4.30
146 154 0.042581 TATGCACCTGGACAGAGGGA 59.957 55.000 0.00 0.00 37.45 4.20
148 156 1.556911 ACTTATGCACCTGGACAGAGG 59.443 52.381 0.00 0.00 39.28 3.69
149 157 2.234661 TGACTTATGCACCTGGACAGAG 59.765 50.000 0.00 3.78 0.00 3.35
150 158 2.256306 TGACTTATGCACCTGGACAGA 58.744 47.619 0.00 0.00 0.00 3.41
151 159 2.768253 TGACTTATGCACCTGGACAG 57.232 50.000 0.00 0.00 0.00 3.51
152 160 3.719268 AATGACTTATGCACCTGGACA 57.281 42.857 0.00 0.00 0.00 4.02
155 163 4.949856 ACCTAAAATGACTTATGCACCTGG 59.050 41.667 0.00 0.00 0.00 4.45
157 165 6.010219 ACAACCTAAAATGACTTATGCACCT 58.990 36.000 0.00 0.00 0.00 4.00
158 166 6.092748 CACAACCTAAAATGACTTATGCACC 58.907 40.000 0.00 0.00 0.00 5.01
161 169 5.572896 GTGCACAACCTAAAATGACTTATGC 59.427 40.000 13.17 0.00 0.00 3.14
162 170 6.092748 GGTGCACAACCTAAAATGACTTATG 58.907 40.000 20.43 0.00 46.55 1.90
163 171 6.267496 GGTGCACAACCTAAAATGACTTAT 57.733 37.500 20.43 0.00 46.55 1.73
164 172 5.699097 GGTGCACAACCTAAAATGACTTA 57.301 39.130 20.43 0.00 46.55 2.24
165 173 4.584327 GGTGCACAACCTAAAATGACTT 57.416 40.909 20.43 0.00 46.55 3.01
176 184 2.513065 CTTGATCGCGGTGCACAACC 62.513 60.000 20.43 4.85 46.60 3.77
177 185 1.154413 CTTGATCGCGGTGCACAAC 60.154 57.895 20.43 8.80 0.00 3.32
178 186 1.301322 TCTTGATCGCGGTGCACAA 60.301 52.632 20.43 0.00 0.00 3.33
179 187 2.027073 GTCTTGATCGCGGTGCACA 61.027 57.895 20.43 0.00 0.00 4.57
180 188 2.778679 GTCTTGATCGCGGTGCAC 59.221 61.111 8.80 8.80 0.00 4.57
181 189 2.757155 TTCGTCTTGATCGCGGTGCA 62.757 55.000 6.13 0.00 0.00 4.57
182 190 2.014093 CTTCGTCTTGATCGCGGTGC 62.014 60.000 6.13 0.00 0.00 5.01
183 191 1.413767 CCTTCGTCTTGATCGCGGTG 61.414 60.000 6.13 0.00 0.00 4.94
184 192 1.153823 CCTTCGTCTTGATCGCGGT 60.154 57.895 6.13 0.00 0.00 5.68
185 193 0.457853 TTCCTTCGTCTTGATCGCGG 60.458 55.000 6.13 0.00 0.00 6.46
186 194 1.346365 TTTCCTTCGTCTTGATCGCG 58.654 50.000 0.00 0.00 0.00 5.87
187 195 2.472397 CGTTTTCCTTCGTCTTGATCGC 60.472 50.000 0.00 0.00 0.00 4.58
188 196 2.984471 TCGTTTTCCTTCGTCTTGATCG 59.016 45.455 0.00 0.00 0.00 3.69
189 197 4.235360 TCTCGTTTTCCTTCGTCTTGATC 58.765 43.478 0.00 0.00 0.00 2.92
190 198 4.252971 TCTCGTTTTCCTTCGTCTTGAT 57.747 40.909 0.00 0.00 0.00 2.57
191 199 3.720949 TCTCGTTTTCCTTCGTCTTGA 57.279 42.857 0.00 0.00 0.00 3.02
192 200 4.789095 TTTCTCGTTTTCCTTCGTCTTG 57.211 40.909 0.00 0.00 0.00 3.02
193 201 5.296035 ACATTTTCTCGTTTTCCTTCGTCTT 59.704 36.000 0.00 0.00 0.00 3.01
194 202 4.814771 ACATTTTCTCGTTTTCCTTCGTCT 59.185 37.500 0.00 0.00 0.00 4.18
195 203 5.091910 ACATTTTCTCGTTTTCCTTCGTC 57.908 39.130 0.00 0.00 0.00 4.20
196 204 5.494632 AACATTTTCTCGTTTTCCTTCGT 57.505 34.783 0.00 0.00 0.00 3.85
197 205 8.417176 CAATAAACATTTTCTCGTTTTCCTTCG 58.583 33.333 0.00 0.00 36.72 3.79
198 206 9.458374 TCAATAAACATTTTCTCGTTTTCCTTC 57.542 29.630 0.00 0.00 36.72 3.46
199 207 9.244799 GTCAATAAACATTTTCTCGTTTTCCTT 57.755 29.630 0.00 0.00 36.72 3.36
200 208 8.630037 AGTCAATAAACATTTTCTCGTTTTCCT 58.370 29.630 0.00 0.00 36.72 3.36
201 209 8.797266 AGTCAATAAACATTTTCTCGTTTTCC 57.203 30.769 0.00 0.00 36.72 3.13
237 245 7.966111 CAATGTGTTAGTTTATTGCATGCAAT 58.034 30.769 39.40 39.40 46.85 3.56
238 246 7.348808 CAATGTGTTAGTTTATTGCATGCAA 57.651 32.000 33.57 33.57 40.47 4.08
239 247 6.947903 CAATGTGTTAGTTTATTGCATGCA 57.052 33.333 18.46 18.46 0.00 3.96
245 253 9.961266 CATGAAATGCAATGTGTTAGTTTATTG 57.039 29.630 0.00 0.00 37.62 1.90
258 266 7.971722 TGAGACTATCAAACATGAAATGCAATG 59.028 33.333 0.00 0.00 41.25 2.82
259 267 8.058667 TGAGACTATCAAACATGAAATGCAAT 57.941 30.769 0.00 0.00 41.25 3.56
260 268 7.451501 TGAGACTATCAAACATGAAATGCAA 57.548 32.000 0.00 0.00 41.25 4.08
261 269 7.451501 TTGAGACTATCAAACATGAAATGCA 57.548 32.000 0.00 0.00 45.37 3.96
273 281 8.339344 TGCTTTCAATGATTTGAGACTATCAA 57.661 30.769 0.00 0.00 46.31 2.57
274 282 7.926674 TGCTTTCAATGATTTGAGACTATCA 57.073 32.000 0.00 0.00 42.60 2.15
275 283 7.378995 GCATGCTTTCAATGATTTGAGACTATC 59.621 37.037 11.37 0.00 42.60 2.08
276 284 7.147966 TGCATGCTTTCAATGATTTGAGACTAT 60.148 33.333 20.33 0.00 42.60 2.12
277 285 6.151480 TGCATGCTTTCAATGATTTGAGACTA 59.849 34.615 20.33 0.00 42.60 2.59
278 286 5.047590 TGCATGCTTTCAATGATTTGAGACT 60.048 36.000 20.33 0.00 42.60 3.24
279 287 5.165676 TGCATGCTTTCAATGATTTGAGAC 58.834 37.500 20.33 0.00 42.60 3.36
280 288 5.394224 TGCATGCTTTCAATGATTTGAGA 57.606 34.783 20.33 0.00 42.60 3.27
281 289 5.580691 ACATGCATGCTTTCAATGATTTGAG 59.419 36.000 26.53 0.00 42.60 3.02
282 290 5.483811 ACATGCATGCTTTCAATGATTTGA 58.516 33.333 26.53 0.00 40.09 2.69
283 291 5.220586 GGACATGCATGCTTTCAATGATTTG 60.221 40.000 26.53 0.00 0.00 2.32
284 292 4.873827 GGACATGCATGCTTTCAATGATTT 59.126 37.500 26.53 1.67 0.00 2.17
285 293 4.161565 AGGACATGCATGCTTTCAATGATT 59.838 37.500 26.53 1.90 0.00 2.57
286 294 3.704566 AGGACATGCATGCTTTCAATGAT 59.295 39.130 26.53 2.47 0.00 2.45
287 295 3.093814 AGGACATGCATGCTTTCAATGA 58.906 40.909 26.53 0.00 0.00 2.57
288 296 3.520290 AGGACATGCATGCTTTCAATG 57.480 42.857 26.53 15.62 0.00 2.82
289 297 4.018490 TGTAGGACATGCATGCTTTCAAT 58.982 39.130 26.53 11.28 0.00 2.57
290 298 3.419943 TGTAGGACATGCATGCTTTCAA 58.580 40.909 26.53 6.10 0.00 2.69
291 299 3.070476 TGTAGGACATGCATGCTTTCA 57.930 42.857 26.53 15.42 0.00 2.69
292 300 3.881688 AGATGTAGGACATGCATGCTTTC 59.118 43.478 26.53 16.07 39.27 2.62
293 301 3.881688 GAGATGTAGGACATGCATGCTTT 59.118 43.478 26.53 13.79 39.27 3.51
294 302 3.136077 AGAGATGTAGGACATGCATGCTT 59.864 43.478 26.53 16.93 39.27 3.91
295 303 2.704596 AGAGATGTAGGACATGCATGCT 59.295 45.455 26.53 17.96 39.27 3.79
296 304 3.123157 AGAGATGTAGGACATGCATGC 57.877 47.619 26.53 18.01 39.27 4.06
297 305 8.093307 ACTAATAAGAGATGTAGGACATGCATG 58.907 37.037 25.09 25.09 39.27 4.06
298 306 8.200024 ACTAATAAGAGATGTAGGACATGCAT 57.800 34.615 0.00 0.00 39.27 3.96
299 307 7.603180 ACTAATAAGAGATGTAGGACATGCA 57.397 36.000 0.00 0.00 39.27 3.96
300 308 8.144478 TCAACTAATAAGAGATGTAGGACATGC 58.856 37.037 0.00 0.00 39.27 4.06
328 336 9.442047 CTCACCTTGTTTCTTATTTCTAGACAT 57.558 33.333 0.00 0.00 0.00 3.06
329 337 8.647796 TCTCACCTTGTTTCTTATTTCTAGACA 58.352 33.333 0.00 0.00 0.00 3.41
330 338 9.145865 CTCTCACCTTGTTTCTTATTTCTAGAC 57.854 37.037 0.00 0.00 0.00 2.59
331 339 8.871125 ACTCTCACCTTGTTTCTTATTTCTAGA 58.129 33.333 0.00 0.00 0.00 2.43
332 340 9.495572 AACTCTCACCTTGTTTCTTATTTCTAG 57.504 33.333 0.00 0.00 0.00 2.43
334 342 9.847224 TTAACTCTCACCTTGTTTCTTATTTCT 57.153 29.630 0.00 0.00 0.00 2.52
337 345 9.574516 ACATTAACTCTCACCTTGTTTCTTATT 57.425 29.630 0.00 0.00 0.00 1.40
339 347 9.485206 GTACATTAACTCTCACCTTGTTTCTTA 57.515 33.333 0.00 0.00 0.00 2.10
340 348 7.444487 GGTACATTAACTCTCACCTTGTTTCTT 59.556 37.037 0.00 0.00 0.00 2.52
341 349 6.935208 GGTACATTAACTCTCACCTTGTTTCT 59.065 38.462 0.00 0.00 0.00 2.52
342 350 6.128634 CGGTACATTAACTCTCACCTTGTTTC 60.129 42.308 0.00 0.00 0.00 2.78
343 351 5.699458 CGGTACATTAACTCTCACCTTGTTT 59.301 40.000 0.00 0.00 0.00 2.83
344 352 5.221581 ACGGTACATTAACTCTCACCTTGTT 60.222 40.000 0.00 0.00 0.00 2.83
345 353 4.282703 ACGGTACATTAACTCTCACCTTGT 59.717 41.667 0.00 0.00 0.00 3.16
346 354 4.625742 CACGGTACATTAACTCTCACCTTG 59.374 45.833 0.00 0.00 0.00 3.61
347 355 4.817517 CACGGTACATTAACTCTCACCTT 58.182 43.478 0.00 0.00 0.00 3.50
348 356 3.368116 GCACGGTACATTAACTCTCACCT 60.368 47.826 0.00 0.00 0.00 4.00
349 357 2.928116 GCACGGTACATTAACTCTCACC 59.072 50.000 0.00 0.00 0.00 4.02
350 358 2.928116 GGCACGGTACATTAACTCTCAC 59.072 50.000 0.00 0.00 0.00 3.51
351 359 2.829720 AGGCACGGTACATTAACTCTCA 59.170 45.455 0.00 0.00 0.00 3.27
352 360 3.521947 AGGCACGGTACATTAACTCTC 57.478 47.619 0.00 0.00 0.00 3.20
353 361 4.465305 ACTTAGGCACGGTACATTAACTCT 59.535 41.667 0.00 0.00 0.00 3.24
354 362 4.565564 CACTTAGGCACGGTACATTAACTC 59.434 45.833 0.00 0.00 0.00 3.01
355 363 4.020839 ACACTTAGGCACGGTACATTAACT 60.021 41.667 0.00 0.00 0.00 2.24
356 364 4.248058 ACACTTAGGCACGGTACATTAAC 58.752 43.478 0.00 0.00 0.00 2.01
357 365 4.540359 ACACTTAGGCACGGTACATTAA 57.460 40.909 0.00 0.00 0.00 1.40
358 366 4.540359 AACACTTAGGCACGGTACATTA 57.460 40.909 0.00 0.00 0.00 1.90
359 367 3.412237 AACACTTAGGCACGGTACATT 57.588 42.857 0.00 0.00 0.00 2.71
360 368 3.332034 GAAACACTTAGGCACGGTACAT 58.668 45.455 0.00 0.00 0.00 2.29
361 369 2.758009 GAAACACTTAGGCACGGTACA 58.242 47.619 0.00 0.00 0.00 2.90
362 370 1.723003 CGAAACACTTAGGCACGGTAC 59.277 52.381 0.00 0.00 0.00 3.34
363 371 1.612950 TCGAAACACTTAGGCACGGTA 59.387 47.619 0.00 0.00 0.00 4.02
364 372 0.390124 TCGAAACACTTAGGCACGGT 59.610 50.000 0.00 0.00 0.00 4.83
365 373 1.068474 CTCGAAACACTTAGGCACGG 58.932 55.000 0.00 0.00 0.00 4.94
366 374 2.060326 TCTCGAAACACTTAGGCACG 57.940 50.000 0.00 0.00 0.00 5.34
367 375 6.663944 AATAATCTCGAAACACTTAGGCAC 57.336 37.500 0.00 0.00 0.00 5.01
368 376 6.876789 TCAAATAATCTCGAAACACTTAGGCA 59.123 34.615 0.00 0.00 0.00 4.75
369 377 7.303634 TCAAATAATCTCGAAACACTTAGGC 57.696 36.000 0.00 0.00 0.00 3.93
374 382 9.965824 ACAAAAATCAAATAATCTCGAAACACT 57.034 25.926 0.00 0.00 0.00 3.55
395 403 9.575868 TCCAGGTGTATAAATCACTTTACAAAA 57.424 29.630 0.00 0.00 36.25 2.44
396 404 9.005777 GTCCAGGTGTATAAATCACTTTACAAA 57.994 33.333 0.00 0.00 36.25 2.83
397 405 8.380099 AGTCCAGGTGTATAAATCACTTTACAA 58.620 33.333 0.00 0.00 36.25 2.41
398 406 7.822334 CAGTCCAGGTGTATAAATCACTTTACA 59.178 37.037 0.00 0.00 36.25 2.41
399 407 8.038944 TCAGTCCAGGTGTATAAATCACTTTAC 58.961 37.037 0.00 0.00 36.25 2.01
400 408 8.141298 TCAGTCCAGGTGTATAAATCACTTTA 57.859 34.615 0.00 0.00 36.25 1.85
401 409 7.016153 TCAGTCCAGGTGTATAAATCACTTT 57.984 36.000 0.00 0.00 36.25 2.66
402 410 6.440647 TCTCAGTCCAGGTGTATAAATCACTT 59.559 38.462 0.00 0.00 36.25 3.16
403 411 5.958380 TCTCAGTCCAGGTGTATAAATCACT 59.042 40.000 0.00 0.00 36.25 3.41
404 412 6.222038 TCTCAGTCCAGGTGTATAAATCAC 57.778 41.667 0.00 0.00 35.36 3.06
405 413 6.440647 ACTTCTCAGTCCAGGTGTATAAATCA 59.559 38.462 0.00 0.00 0.00 2.57
406 414 6.879400 ACTTCTCAGTCCAGGTGTATAAATC 58.121 40.000 0.00 0.00 0.00 2.17
407 415 6.875972 ACTTCTCAGTCCAGGTGTATAAAT 57.124 37.500 0.00 0.00 0.00 1.40
408 416 6.952358 AGTACTTCTCAGTCCAGGTGTATAAA 59.048 38.462 0.00 0.00 34.06 1.40
409 417 6.491383 AGTACTTCTCAGTCCAGGTGTATAA 58.509 40.000 0.00 0.00 34.06 0.98
410 418 6.075949 AGTACTTCTCAGTCCAGGTGTATA 57.924 41.667 0.00 0.00 34.06 1.47
411 419 4.936802 AGTACTTCTCAGTCCAGGTGTAT 58.063 43.478 0.00 0.00 34.06 2.29
412 420 4.383931 AGTACTTCTCAGTCCAGGTGTA 57.616 45.455 0.00 0.00 34.06 2.90
413 421 3.246416 AGTACTTCTCAGTCCAGGTGT 57.754 47.619 0.00 0.00 34.06 4.16
414 422 4.079970 TGTAGTACTTCTCAGTCCAGGTG 58.920 47.826 0.00 0.00 34.06 4.00
415 423 4.043059 TCTGTAGTACTTCTCAGTCCAGGT 59.957 45.833 0.00 0.00 34.06 4.00
416 424 4.590918 TCTGTAGTACTTCTCAGTCCAGG 58.409 47.826 0.00 0.00 34.06 4.45
417 425 5.708230 ACTTCTGTAGTACTTCTCAGTCCAG 59.292 44.000 0.00 8.43 34.56 3.86
418 426 5.632118 ACTTCTGTAGTACTTCTCAGTCCA 58.368 41.667 0.00 0.00 34.56 4.02
419 427 6.578163 AACTTCTGTAGTACTTCTCAGTCC 57.422 41.667 0.00 0.00 35.54 3.85
420 428 8.445493 GTCTAACTTCTGTAGTACTTCTCAGTC 58.555 40.741 0.00 0.00 35.54 3.51
421 429 7.118101 CGTCTAACTTCTGTAGTACTTCTCAGT 59.882 40.741 0.00 0.00 35.54 3.41
422 430 7.118101 ACGTCTAACTTCTGTAGTACTTCTCAG 59.882 40.741 0.00 8.25 35.54 3.35
423 431 6.933521 ACGTCTAACTTCTGTAGTACTTCTCA 59.066 38.462 0.00 0.00 35.54 3.27
424 432 7.117523 TCACGTCTAACTTCTGTAGTACTTCTC 59.882 40.741 0.00 0.00 35.54 2.87
425 433 6.933521 TCACGTCTAACTTCTGTAGTACTTCT 59.066 38.462 0.00 0.00 35.54 2.85
426 434 7.014702 GTCACGTCTAACTTCTGTAGTACTTC 58.985 42.308 0.00 0.00 35.54 3.01
427 435 6.709846 AGTCACGTCTAACTTCTGTAGTACTT 59.290 38.462 0.00 0.00 35.54 2.24
428 436 6.229733 AGTCACGTCTAACTTCTGTAGTACT 58.770 40.000 0.00 0.00 35.54 2.73
429 437 6.479095 AGTCACGTCTAACTTCTGTAGTAC 57.521 41.667 0.00 0.00 35.54 2.73
430 438 7.502120 AAAGTCACGTCTAACTTCTGTAGTA 57.498 36.000 7.69 0.00 35.54 1.82
431 439 6.388435 AAAGTCACGTCTAACTTCTGTAGT 57.612 37.500 7.69 0.00 39.32 2.73
432 440 8.967552 AATAAAGTCACGTCTAACTTCTGTAG 57.032 34.615 7.69 0.00 34.71 2.74
434 442 9.189723 GTTAATAAAGTCACGTCTAACTTCTGT 57.810 33.333 7.69 0.00 34.71 3.41
435 443 9.408069 AGTTAATAAAGTCACGTCTAACTTCTG 57.592 33.333 7.69 0.00 34.71 3.02
436 444 9.623350 GAGTTAATAAAGTCACGTCTAACTTCT 57.377 33.333 7.69 1.44 34.71 2.85
437 445 9.623350 AGAGTTAATAAAGTCACGTCTAACTTC 57.377 33.333 7.69 0.00 37.49 3.01
438 446 9.623350 GAGAGTTAATAAAGTCACGTCTAACTT 57.377 33.333 2.49 2.49 37.49 2.66
439 447 8.790718 TGAGAGTTAATAAAGTCACGTCTAACT 58.209 33.333 0.00 0.00 37.49 2.24
440 448 8.961294 TGAGAGTTAATAAAGTCACGTCTAAC 57.039 34.615 0.00 0.00 37.49 2.34
462 470 7.223193 GCAGCTAGCTCTCATTCATATTATGAG 59.777 40.741 16.15 14.47 46.65 2.90
463 471 7.040494 GCAGCTAGCTCTCATTCATATTATGA 58.960 38.462 16.15 2.14 41.15 2.15
464 472 6.817140 TGCAGCTAGCTCTCATTCATATTATG 59.183 38.462 16.15 0.00 45.94 1.90
465 473 6.817641 GTGCAGCTAGCTCTCATTCATATTAT 59.182 38.462 16.15 0.00 45.94 1.28
466 474 6.162079 GTGCAGCTAGCTCTCATTCATATTA 58.838 40.000 16.15 0.00 45.94 0.98
467 475 4.996122 GTGCAGCTAGCTCTCATTCATATT 59.004 41.667 16.15 0.00 45.94 1.28
468 476 4.563168 GGTGCAGCTAGCTCTCATTCATAT 60.563 45.833 16.15 0.00 45.94 1.78
472 480 1.580815 GGTGCAGCTAGCTCTCATTC 58.419 55.000 16.15 8.75 45.94 2.67
503 512 3.674753 GCATGCGCTTATTTTCAAACAGT 59.325 39.130 9.73 0.00 34.30 3.55
505 514 3.646946 TGCATGCGCTTATTTTCAAACA 58.353 36.364 14.09 0.00 39.64 2.83
536 545 7.284919 ACCTCTGGTAAAACTGGTTTTTATG 57.715 36.000 15.16 5.94 40.88 1.90
543 552 2.028385 CGCTACCTCTGGTAAAACTGGT 60.028 50.000 0.00 0.00 37.76 4.00
757 775 2.686816 GCATAACAAGTGGCGGCGT 61.687 57.895 9.37 0.00 0.00 5.68
907 933 3.044305 GTTGCTTGCTCGCTCGGT 61.044 61.111 0.00 0.00 0.00 4.69
909 935 1.835483 AACTGTTGCTTGCTCGCTCG 61.835 55.000 0.00 0.00 0.00 5.03
1083 1110 4.731612 CTGTCCTGCTCGCGCACT 62.732 66.667 8.75 0.00 42.25 4.40
1164 1191 3.064987 CTCCTTGGCGTCGTCCGAT 62.065 63.158 0.00 0.00 39.56 4.18
1388 1415 4.386951 CGTGGTGATGGTGGCCGA 62.387 66.667 0.00 0.00 0.00 5.54
1638 1665 0.937304 CACTCCCGTCGCCATTATTG 59.063 55.000 0.00 0.00 0.00 1.90
1710 1737 0.388520 CGAACGTCTGATGGTGCTCA 60.389 55.000 1.43 0.00 0.00 4.26
1805 1836 2.558359 GGTAGTTTCAACAGGCTGCATT 59.442 45.455 15.89 0.00 0.00 3.56
1876 1911 0.445436 GTGAAACTGGATGCTCGCAG 59.555 55.000 0.00 0.00 0.00 5.18
1877 1912 2.543578 GTGAAACTGGATGCTCGCA 58.456 52.632 0.00 0.00 0.00 5.10
2010 2045 9.543783 GATCCCTTCGATTACATAACTAAGTTT 57.456 33.333 0.00 0.00 0.00 2.66
2012 2047 8.246430 TGATCCCTTCGATTACATAACTAAGT 57.754 34.615 0.00 0.00 0.00 2.24
2049 2084 7.362662 TGCATAACAGACAAGTCTTTGAATTC 58.637 34.615 0.00 0.00 37.98 2.17
2065 2100 5.730802 CGTACGTGGTTAAAATGCATAACAG 59.269 40.000 7.22 6.09 35.44 3.16
2164 3045 0.736325 CGGATCTGAACGTCACCACC 60.736 60.000 0.00 0.00 0.00 4.61
2178 3059 1.075896 AGACCTCCAGACCCGGATC 60.076 63.158 0.73 0.00 33.56 3.36
2180 3061 2.037367 CAGACCTCCAGACCCGGA 59.963 66.667 0.73 0.00 0.00 5.14
2183 3064 0.827368 GATCACAGACCTCCAGACCC 59.173 60.000 0.00 0.00 0.00 4.46
2189 3070 1.226717 GCGACGATCACAGACCTCC 60.227 63.158 0.00 0.00 0.00 4.30
2195 3076 3.250323 CAGCCGCGACGATCACAG 61.250 66.667 8.23 0.00 0.00 3.66
2235 3116 0.811281 AACGCAGGGATTTTGCTAGC 59.189 50.000 8.10 8.10 39.38 3.42
2237 3118 2.029470 CCAAAACGCAGGGATTTTGCTA 60.029 45.455 14.44 0.00 42.10 3.49
2270 3151 2.585247 GACACCTATGGGCGTCGC 60.585 66.667 9.22 9.22 35.36 5.19
2272 3153 2.585247 GCGACACCTATGGGCGTC 60.585 66.667 6.21 6.21 40.28 5.19
2273 3154 3.075005 AGCGACACCTATGGGCGT 61.075 61.111 0.00 0.00 35.29 5.68
2274 3155 2.279517 GAGCGACACCTATGGGCG 60.280 66.667 0.00 0.00 35.29 6.13
2275 3156 1.068250 GAGAGCGACACCTATGGGC 59.932 63.158 0.00 0.00 35.63 5.36
2276 3157 0.757188 AGGAGAGCGACACCTATGGG 60.757 60.000 0.00 0.00 37.80 4.00
2277 3158 0.671251 GAGGAGAGCGACACCTATGG 59.329 60.000 3.45 0.00 39.58 2.74
2324 3208 0.618458 TAACCCAGACCCTGTCATGC 59.382 55.000 0.00 0.00 34.60 4.06
2339 3223 3.059393 CGAAACGAACAAGGACCTTAACC 60.059 47.826 6.38 0.00 0.00 2.85
2352 3236 1.347320 CTGCCTAGTCCGAAACGAAC 58.653 55.000 0.00 0.00 0.00 3.95
2355 3239 1.078759 CTGCTGCCTAGTCCGAAACG 61.079 60.000 0.00 0.00 0.00 3.60
2373 3257 1.993370 GAAACGATGCTAAGTGTCGCT 59.007 47.619 0.00 0.00 38.85 4.93
2402 3286 5.365605 AGATCCCGTGATAACCAGACATTTA 59.634 40.000 0.00 0.00 0.00 1.40
2405 3289 3.309296 AGATCCCGTGATAACCAGACAT 58.691 45.455 0.00 0.00 0.00 3.06
2407 3291 3.890147 AGTAGATCCCGTGATAACCAGAC 59.110 47.826 0.00 0.00 0.00 3.51
2418 3302 4.698780 GCCTTTTTACAAAGTAGATCCCGT 59.301 41.667 0.94 0.00 38.22 5.28
2450 3334 7.955324 CACCAAAATATATGGCTAAACGATACG 59.045 37.037 7.26 0.00 41.89 3.06
2454 3338 6.459024 GCACACCAAAATATATGGCTAAACGA 60.459 38.462 7.26 0.00 41.89 3.85
2455 3339 5.685511 GCACACCAAAATATATGGCTAAACG 59.314 40.000 7.26 0.00 41.89 3.60
2518 3402 0.093535 CCGATATATTGCAGCGCGTG 59.906 55.000 8.43 6.12 0.00 5.34
2520 3404 1.059369 GCCGATATATTGCAGCGCG 59.941 57.895 0.00 0.00 0.00 6.86
2521 3405 0.516877 TTGCCGATATATTGCAGCGC 59.483 50.000 0.00 0.00 36.21 5.92
2522 3406 2.224079 ACTTTGCCGATATATTGCAGCG 59.776 45.455 9.84 8.24 36.21 5.18
2523 3407 3.003689 ACACTTTGCCGATATATTGCAGC 59.996 43.478 9.84 3.47 36.21 5.25
2524 3408 4.512944 AGACACTTTGCCGATATATTGCAG 59.487 41.667 9.84 4.35 36.21 4.41
2525 3409 4.450976 AGACACTTTGCCGATATATTGCA 58.549 39.130 6.74 6.74 0.00 4.08
2526 3410 4.376413 CGAGACACTTTGCCGATATATTGC 60.376 45.833 0.00 0.00 0.00 3.56
2527 3411 4.376413 GCGAGACACTTTGCCGATATATTG 60.376 45.833 0.00 0.00 0.00 1.90
2528 3412 3.741344 GCGAGACACTTTGCCGATATATT 59.259 43.478 0.00 0.00 0.00 1.28
2529 3413 3.318017 GCGAGACACTTTGCCGATATAT 58.682 45.455 0.00 0.00 0.00 0.86
2530 3414 2.545113 GGCGAGACACTTTGCCGATATA 60.545 50.000 0.00 0.00 37.81 0.86
2531 3415 1.571919 GCGAGACACTTTGCCGATAT 58.428 50.000 0.00 0.00 0.00 1.63
2532 3416 0.459585 GGCGAGACACTTTGCCGATA 60.460 55.000 0.00 0.00 37.81 2.92
2533 3417 1.741770 GGCGAGACACTTTGCCGAT 60.742 57.895 0.00 0.00 37.81 4.18
2534 3418 2.357034 GGCGAGACACTTTGCCGA 60.357 61.111 0.00 0.00 37.81 5.54
2537 3421 0.663153 AACTTGGCGAGACACTTTGC 59.337 50.000 9.20 0.00 0.00 3.68
2538 3422 1.597937 GCAACTTGGCGAGACACTTTG 60.598 52.381 9.20 3.24 0.00 2.77
2539 3423 0.663153 GCAACTTGGCGAGACACTTT 59.337 50.000 9.20 0.00 0.00 2.66
2540 3424 0.179045 AGCAACTTGGCGAGACACTT 60.179 50.000 9.20 0.00 39.27 3.16
2541 3425 0.679505 TAGCAACTTGGCGAGACACT 59.320 50.000 9.20 4.71 39.27 3.55
2542 3426 1.071605 CTAGCAACTTGGCGAGACAC 58.928 55.000 9.20 0.00 38.60 3.67
2543 3427 0.679505 ACTAGCAACTTGGCGAGACA 59.320 50.000 9.20 0.00 38.60 3.41
2546 3430 0.716108 CGAACTAGCAACTTGGCGAG 59.284 55.000 0.00 0.00 41.56 5.03
2562 3446 1.202557 GGTTGTGTGTACCCTCACGAA 60.203 52.381 0.00 0.00 40.74 3.85
2583 3467 6.918022 CCACTTCTTTGAAGGAAAATACACAC 59.082 38.462 11.35 0.00 0.00 3.82
2594 3478 6.994496 TGATATGCTATCCACTTCTTTGAAGG 59.006 38.462 11.35 1.83 0.00 3.46
2602 3486 5.994054 TCTTGCTTGATATGCTATCCACTTC 59.006 40.000 0.00 0.00 0.00 3.01
2609 3493 6.293698 TCATGTGTCTTGCTTGATATGCTAT 58.706 36.000 0.00 0.00 0.00 2.97
2660 3544 2.412591 CCATGACTAATCCAGACCCCT 58.587 52.381 0.00 0.00 0.00 4.79
2663 3547 3.648067 TCATCCCATGACTAATCCAGACC 59.352 47.826 0.00 0.00 33.59 3.85
2672 3556 4.987963 ATGCAGATTCATCCCATGACTA 57.012 40.909 0.00 0.00 39.39 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.