Multiple sequence alignment - TraesCS6B01G316400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G316400 chr6B 100.000 4405 0 0 1 4405 564216978 564221382 0.000000e+00 8135.0
1 TraesCS6B01G316400 chr6B 89.855 69 7 0 2926 2994 120677309 120677377 6.070000e-14 89.8
2 TraesCS6B01G316400 chr6A 89.792 2263 118 35 2042 4258 519225590 519227785 0.000000e+00 2795.0
3 TraesCS6B01G316400 chr6A 92.017 1641 75 26 1 1623 519222922 519224524 0.000000e+00 2254.0
4 TraesCS6B01G316400 chr6A 94.909 275 10 2 1784 2054 519224522 519224796 1.130000e-115 427.0
5 TraesCS6B01G316400 chr6A 100.000 28 0 0 3133 3160 519226514 519226541 8.000000e-03 52.8
6 TraesCS6B01G316400 chr6D 94.359 1631 55 15 1 1623 377829778 377831379 0.000000e+00 2468.0
7 TraesCS6B01G316400 chr6D 93.758 801 39 3 2999 3793 377832731 377833526 0.000000e+00 1192.0
8 TraesCS6B01G316400 chr6D 89.351 817 50 10 1855 2641 377831490 377832299 0.000000e+00 992.0
9 TraesCS6B01G316400 chr6D 93.898 295 18 0 2634 2928 377832434 377832728 3.130000e-121 446.0
10 TraesCS6B01G316400 chr6D 84.821 448 49 15 3827 4258 377833600 377834044 2.430000e-117 433.0
11 TraesCS6B01G316400 chr6D 91.781 73 3 1 1784 1856 377831377 377831446 1.010000e-16 99.0
12 TraesCS6B01G316400 chr6D 97.500 40 1 0 3121 3160 377832745 377832784 7.910000e-08 69.4
13 TraesCS6B01G316400 chr4A 92.216 167 13 0 1622 1788 5344979 5344813 2.050000e-58 237.0
14 TraesCS6B01G316400 chr3A 92.169 166 11 2 1622 1786 585605638 585605802 2.650000e-57 233.0
15 TraesCS6B01G316400 chr3A 87.931 58 6 1 2922 2979 656101544 656101600 2.840000e-07 67.6
16 TraesCS6B01G316400 chr2A 91.716 169 12 2 1622 1789 235674508 235674675 2.650000e-57 233.0
17 TraesCS6B01G316400 chr7A 91.617 167 12 2 1622 1787 685584542 685584377 3.430000e-56 230.0
18 TraesCS6B01G316400 chr5B 90.751 173 15 1 1614 1786 391820507 391820678 3.430000e-56 230.0
19 TraesCS6B01G316400 chr2D 89.944 179 15 3 1617 1794 161906847 161907023 1.230000e-55 228.0
20 TraesCS6B01G316400 chr2B 90.230 174 17 0 1619 1792 28427340 28427167 1.230000e-55 228.0
21 TraesCS6B01G316400 chr3B 88.360 189 17 5 1622 1806 157925299 157925112 5.730000e-54 222.0
22 TraesCS6B01G316400 chr3B 95.833 48 2 0 2925 2972 583374114 583374067 1.310000e-10 78.7
23 TraesCS6B01G316400 chr3B 93.617 47 3 0 2922 2968 686338130 686338176 2.200000e-08 71.3
24 TraesCS6B01G316400 chr7D 89.205 176 19 0 1615 1790 205230475 205230650 2.060000e-53 220.0
25 TraesCS6B01G316400 chr7D 87.342 79 8 1 2926 3002 548620382 548620460 6.070000e-14 89.8
26 TraesCS6B01G316400 chr7D 91.803 61 2 1 2933 2993 22657759 22657816 1.020000e-11 82.4
27 TraesCS6B01G316400 chr7D 87.500 56 5 2 3962 4015 1957574 1957519 3.680000e-06 63.9
28 TraesCS6B01G316400 chr3D 86.486 74 6 1 2921 2994 61675394 61675463 1.310000e-10 78.7
29 TraesCS6B01G316400 chr1D 92.308 52 3 1 2921 2971 279100794 279100743 6.110000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G316400 chr6B 564216978 564221382 4404 False 8135.0 8135 100.000000 1 4405 1 chr6B.!!$F2 4404
1 TraesCS6B01G316400 chr6A 519222922 519227785 4863 False 1382.2 2795 94.179500 1 4258 4 chr6A.!!$F1 4257
2 TraesCS6B01G316400 chr6D 377829778 377834044 4266 False 814.2 2468 92.209714 1 4258 7 chr6D.!!$F1 4257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.030369 AAGAACGCGAAGTGAGTCGT 59.970 50.0 15.93 0.0 43.07 4.34 F
336 350 0.890542 GCGCTATGCATGGGATTGGA 60.891 55.0 10.16 0.0 45.45 3.53 F
801 821 0.946221 CATGGCGATAGGAGGCGTTC 60.946 60.0 0.00 0.0 36.92 3.95 F
1635 1662 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.0 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 3138 1.412710 GTCAACCATAGATGAGCCGGA 59.587 52.381 5.05 0.0 0.0 5.14 R
2430 3336 4.280929 CGATCCACTAGACCACCAATGATA 59.719 45.833 0.00 0.0 0.0 2.15 R
2694 3748 5.117406 TCTAGGCATCTTAGTCACAGAGA 57.883 43.478 0.00 0.0 0.0 3.10 R
3480 4543 1.204941 GTCGTGGGCAGAGTAGATTGT 59.795 52.381 0.00 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
256 257 0.587242 CGCCATGAATCAAGAACGCG 60.587 55.000 3.53 3.53 0.00 6.01
267 268 0.030369 AAGAACGCGAAGTGAGTCGT 59.970 50.000 15.93 0.00 43.07 4.34
276 290 3.314553 CGAAGTGAGTCGTGTACCAAAT 58.685 45.455 0.00 0.00 36.26 2.32
293 307 7.816995 TGTACCAAATTAATCAACCAAGAATGC 59.183 33.333 0.00 0.00 0.00 3.56
295 309 6.650390 ACCAAATTAATCAACCAAGAATGCAC 59.350 34.615 0.00 0.00 0.00 4.57
325 339 4.201570 CGATAATCAAGAAGAGCGCTATGC 60.202 45.833 11.50 5.62 46.98 3.14
335 349 1.582968 GCGCTATGCATGGGATTGG 59.417 57.895 10.16 0.00 45.45 3.16
336 350 0.890542 GCGCTATGCATGGGATTGGA 60.891 55.000 10.16 0.00 45.45 3.53
337 351 1.830279 CGCTATGCATGGGATTGGAT 58.170 50.000 10.16 0.00 0.00 3.41
338 352 1.741706 CGCTATGCATGGGATTGGATC 59.258 52.381 10.16 0.00 0.00 3.36
339 353 2.617276 CGCTATGCATGGGATTGGATCT 60.617 50.000 10.16 0.00 0.00 2.75
340 354 2.753452 GCTATGCATGGGATTGGATCTG 59.247 50.000 10.16 0.00 0.00 2.90
341 355 2.304221 ATGCATGGGATTGGATCTGG 57.696 50.000 0.00 0.00 0.00 3.86
342 356 1.224436 TGCATGGGATTGGATCTGGA 58.776 50.000 0.00 0.00 0.00 3.86
343 357 1.570024 TGCATGGGATTGGATCTGGAA 59.430 47.619 0.00 0.00 0.00 3.53
344 358 2.178325 TGCATGGGATTGGATCTGGAAT 59.822 45.455 0.00 0.00 0.00 3.01
383 400 2.283388 TTACCCAGGACGTCGCCT 60.283 61.111 9.92 0.00 39.37 5.52
600 620 2.503356 AGAAGGATCAGTAAGGGCACTG 59.497 50.000 0.00 0.00 46.04 3.66
614 634 1.337823 GGCACTGGTGTGTAGTGTAGG 60.338 57.143 6.95 0.00 45.60 3.18
754 774 3.113514 TTGCTGCACAACGGGAGGA 62.114 57.895 0.00 0.00 31.73 3.71
801 821 0.946221 CATGGCGATAGGAGGCGTTC 60.946 60.000 0.00 0.00 36.92 3.95
847 867 4.398988 TGAATACGTAAGCCTCGTTAGGAA 59.601 41.667 0.00 0.00 45.56 3.36
1052 1073 4.308458 CGTGGGAGACGGCAACCA 62.308 66.667 0.00 0.00 44.85 3.67
1056 1077 2.670148 GGGAGACGGCAACCATCCT 61.670 63.158 6.83 0.00 0.00 3.24
1520 1547 3.744660 AGGGGATTATGCGATTCTTGAC 58.255 45.455 0.00 0.00 0.00 3.18
1626 1653 6.040878 ACATTAGACGCTAATGTTGTACTCC 58.959 40.000 25.98 0.00 43.31 3.85
1627 1654 3.521947 AGACGCTAATGTTGTACTCCC 57.478 47.619 0.00 0.00 0.00 4.30
1628 1655 3.097614 AGACGCTAATGTTGTACTCCCT 58.902 45.455 0.00 0.00 0.00 4.20
1629 1656 3.130693 AGACGCTAATGTTGTACTCCCTC 59.869 47.826 0.00 0.00 0.00 4.30
1630 1657 2.167900 ACGCTAATGTTGTACTCCCTCC 59.832 50.000 0.00 0.00 0.00 4.30
1631 1658 2.798499 CGCTAATGTTGTACTCCCTCCG 60.798 54.545 0.00 0.00 0.00 4.63
1632 1659 2.167900 GCTAATGTTGTACTCCCTCCGT 59.832 50.000 0.00 0.00 0.00 4.69
1633 1660 3.369157 GCTAATGTTGTACTCCCTCCGTT 60.369 47.826 0.00 0.00 0.00 4.44
1634 1661 3.329929 AATGTTGTACTCCCTCCGTTC 57.670 47.619 0.00 0.00 0.00 3.95
1635 1662 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
1636 1663 1.264295 GTTGTACTCCCTCCGTTCCT 58.736 55.000 0.00 0.00 0.00 3.36
1637 1664 2.225091 TGTTGTACTCCCTCCGTTCCTA 60.225 50.000 0.00 0.00 0.00 2.94
1638 1665 2.827921 GTTGTACTCCCTCCGTTCCTAA 59.172 50.000 0.00 0.00 0.00 2.69
1639 1666 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1640 1667 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1641 1668 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1642 1669 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1643 1670 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1644 1671 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1645 1672 6.323210 ACTCCCTCCGTTCCTAAATATTTT 57.677 37.500 5.91 0.00 0.00 1.82
1646 1673 6.728411 ACTCCCTCCGTTCCTAAATATTTTT 58.272 36.000 5.91 0.00 0.00 1.94
1647 1674 7.864770 ACTCCCTCCGTTCCTAAATATTTTTA 58.135 34.615 5.91 0.00 0.00 1.52
1648 1675 8.500238 ACTCCCTCCGTTCCTAAATATTTTTAT 58.500 33.333 5.91 0.00 0.00 1.40
1649 1676 9.350951 CTCCCTCCGTTCCTAAATATTTTTATT 57.649 33.333 5.91 0.00 0.00 1.40
1650 1677 9.703677 TCCCTCCGTTCCTAAATATTTTTATTT 57.296 29.630 5.91 0.00 34.41 1.40
1673 1700 6.737254 TTCGAAGATTTCAAATGGACTACC 57.263 37.500 0.00 0.00 35.04 3.18
1674 1701 6.234920 TTCGAAGATTTCAAATGGACTACCA 58.765 36.000 0.00 0.00 44.26 3.25
1675 1702 6.148811 TTCGAAGATTTCAAATGGACTACCAC 59.851 38.462 0.00 0.00 43.30 4.16
1676 1703 8.171852 TTCGAAGATTTCAAATGGACTACCACA 61.172 37.037 0.00 0.00 43.30 4.17
1724 1751 6.674694 AGAGTGTAGATTCATTCATTGTGC 57.325 37.500 0.00 0.00 0.00 4.57
1725 1752 6.413052 AGAGTGTAGATTCATTCATTGTGCT 58.587 36.000 0.00 0.00 0.00 4.40
1726 1753 6.538021 AGAGTGTAGATTCATTCATTGTGCTC 59.462 38.462 0.00 0.00 0.00 4.26
1727 1754 5.587844 AGTGTAGATTCATTCATTGTGCTCC 59.412 40.000 0.00 0.00 0.00 4.70
1728 1755 4.571984 TGTAGATTCATTCATTGTGCTCCG 59.428 41.667 0.00 0.00 0.00 4.63
1729 1756 3.614092 AGATTCATTCATTGTGCTCCGT 58.386 40.909 0.00 0.00 0.00 4.69
1730 1757 4.769688 AGATTCATTCATTGTGCTCCGTA 58.230 39.130 0.00 0.00 0.00 4.02
1731 1758 5.371526 AGATTCATTCATTGTGCTCCGTAT 58.628 37.500 0.00 0.00 0.00 3.06
1732 1759 4.880886 TTCATTCATTGTGCTCCGTATG 57.119 40.909 0.00 0.00 0.00 2.39
1733 1760 3.872696 TCATTCATTGTGCTCCGTATGT 58.127 40.909 0.00 0.00 0.00 2.29
1734 1761 5.017294 TCATTCATTGTGCTCCGTATGTA 57.983 39.130 0.00 0.00 0.00 2.29
1735 1762 5.049828 TCATTCATTGTGCTCCGTATGTAG 58.950 41.667 0.00 0.00 0.00 2.74
1736 1763 4.465632 TTCATTGTGCTCCGTATGTAGT 57.534 40.909 0.00 0.00 0.00 2.73
1737 1764 4.041740 TCATTGTGCTCCGTATGTAGTC 57.958 45.455 0.00 0.00 0.00 2.59
1738 1765 3.445805 TCATTGTGCTCCGTATGTAGTCA 59.554 43.478 0.00 0.00 0.00 3.41
1739 1766 3.945981 TTGTGCTCCGTATGTAGTCAA 57.054 42.857 0.00 0.00 0.00 3.18
1740 1767 4.465632 TTGTGCTCCGTATGTAGTCAAT 57.534 40.909 0.00 0.00 0.00 2.57
1741 1768 4.465632 TGTGCTCCGTATGTAGTCAATT 57.534 40.909 0.00 0.00 0.00 2.32
1742 1769 4.180817 TGTGCTCCGTATGTAGTCAATTG 58.819 43.478 0.00 0.00 0.00 2.32
1743 1770 4.181578 GTGCTCCGTATGTAGTCAATTGT 58.818 43.478 5.13 0.00 0.00 2.71
1744 1771 4.630069 GTGCTCCGTATGTAGTCAATTGTT 59.370 41.667 5.13 0.00 0.00 2.83
1745 1772 4.629634 TGCTCCGTATGTAGTCAATTGTTG 59.370 41.667 5.13 0.00 0.00 3.33
1746 1773 4.868171 GCTCCGTATGTAGTCAATTGTTGA 59.132 41.667 5.13 0.00 37.33 3.18
1747 1774 5.350365 GCTCCGTATGTAGTCAATTGTTGAA 59.650 40.000 5.13 0.00 42.15 2.69
1748 1775 6.128391 GCTCCGTATGTAGTCAATTGTTGAAA 60.128 38.462 5.13 0.00 42.15 2.69
1749 1776 7.414098 GCTCCGTATGTAGTCAATTGTTGAAAT 60.414 37.037 5.13 0.00 42.15 2.17
1750 1777 7.970384 TCCGTATGTAGTCAATTGTTGAAATC 58.030 34.615 5.13 0.00 42.15 2.17
1751 1778 7.822334 TCCGTATGTAGTCAATTGTTGAAATCT 59.178 33.333 5.13 0.00 42.15 2.40
1752 1779 8.450964 CCGTATGTAGTCAATTGTTGAAATCTT 58.549 33.333 5.13 0.00 42.15 2.40
1753 1780 9.825972 CGTATGTAGTCAATTGTTGAAATCTTT 57.174 29.630 5.13 0.00 42.15 2.52
1756 1783 8.231692 TGTAGTCAATTGTTGAAATCTTTGGA 57.768 30.769 5.13 0.00 42.15 3.53
1757 1784 8.690884 TGTAGTCAATTGTTGAAATCTTTGGAA 58.309 29.630 5.13 0.00 42.15 3.53
1758 1785 9.528018 GTAGTCAATTGTTGAAATCTTTGGAAA 57.472 29.630 5.13 0.00 42.15 3.13
1759 1786 8.652810 AGTCAATTGTTGAAATCTTTGGAAAG 57.347 30.769 5.13 0.00 42.15 2.62
1760 1787 8.477256 AGTCAATTGTTGAAATCTTTGGAAAGA 58.523 29.630 5.13 4.34 44.12 2.52
1761 1788 8.542953 GTCAATTGTTGAAATCTTTGGAAAGAC 58.457 33.333 5.13 0.00 43.45 3.01
1762 1789 8.256605 TCAATTGTTGAAATCTTTGGAAAGACA 58.743 29.630 5.13 0.00 41.14 3.41
1763 1790 9.048446 CAATTGTTGAAATCTTTGGAAAGACAT 57.952 29.630 3.95 0.00 46.80 3.06
1765 1792 9.696917 ATTGTTGAAATCTTTGGAAAGACATAC 57.303 29.630 3.95 0.99 46.80 2.39
1766 1793 8.231692 TGTTGAAATCTTTGGAAAGACATACA 57.768 30.769 3.95 3.17 46.80 2.29
1767 1794 8.859090 TGTTGAAATCTTTGGAAAGACATACAT 58.141 29.630 3.95 0.00 46.80 2.29
1768 1795 9.696917 GTTGAAATCTTTGGAAAGACATACATT 57.303 29.630 3.95 0.00 46.80 2.71
1776 1803 9.329913 CTTTGGAAAGACATACATTTAGAAACG 57.670 33.333 0.00 0.00 38.28 3.60
1777 1804 7.372451 TGGAAAGACATACATTTAGAAACGG 57.628 36.000 0.00 0.00 0.00 4.44
1778 1805 7.162761 TGGAAAGACATACATTTAGAAACGGA 58.837 34.615 0.00 0.00 0.00 4.69
1779 1806 7.333423 TGGAAAGACATACATTTAGAAACGGAG 59.667 37.037 0.00 0.00 0.00 4.63
1780 1807 7.201617 GGAAAGACATACATTTAGAAACGGAGG 60.202 40.741 0.00 0.00 0.00 4.30
1781 1808 5.671493 AGACATACATTTAGAAACGGAGGG 58.329 41.667 0.00 0.00 0.00 4.30
1782 1809 5.424252 AGACATACATTTAGAAACGGAGGGA 59.576 40.000 0.00 0.00 0.00 4.20
1783 1810 5.671493 ACATACATTTAGAAACGGAGGGAG 58.329 41.667 0.00 0.00 0.00 4.30
1784 1811 5.189145 ACATACATTTAGAAACGGAGGGAGT 59.811 40.000 0.00 0.00 0.00 3.85
1882 1954 6.671614 AATTGGCTTAATTGTGAATGCATG 57.328 33.333 0.00 0.00 37.59 4.06
1956 2051 2.682856 ACCAGTTTGTGTAGTGTTGCTG 59.317 45.455 0.00 0.00 0.00 4.41
2000 2097 7.283329 GGTGTGATATACCCAATTCTTTCTCT 58.717 38.462 0.00 0.00 31.89 3.10
2232 3138 2.037772 AGTGAACGGAAGATCAGCAACT 59.962 45.455 0.00 0.00 43.83 3.16
2421 3327 5.245977 TGTCCTTGATGAACTAGACATGTCA 59.754 40.000 27.02 12.38 0.00 3.58
2694 3748 9.498176 GTATTTCAAAATATACCTCGGGTATGT 57.502 33.333 19.83 13.45 46.91 2.29
2702 3756 1.005569 ACCTCGGGTATGTCTCTGTGA 59.994 52.381 0.00 0.00 32.11 3.58
2734 3788 7.112122 TGCCTAGATGTTGTTATGATGTCTTT 58.888 34.615 0.00 0.00 0.00 2.52
2815 3869 5.819991 ACCTGAAGAGCATTTTATGAAGGA 58.180 37.500 0.00 0.00 0.00 3.36
2819 3873 7.201714 CCTGAAGAGCATTTTATGAAGGAGAAG 60.202 40.741 0.00 0.00 0.00 2.85
2931 3985 7.277098 TGCTGCTTATTTTAAACTACTACTCCG 59.723 37.037 0.00 0.00 0.00 4.63
2934 3988 7.761249 TGCTTATTTTAAACTACTACTCCGTCC 59.239 37.037 0.00 0.00 0.00 4.79
2935 3989 7.761249 GCTTATTTTAAACTACTACTCCGTCCA 59.239 37.037 0.00 0.00 0.00 4.02
2960 4014 6.642707 TCCATAATTCTTGTCGTGGTTTTT 57.357 33.333 0.00 0.00 0.00 1.94
2967 4021 5.122512 TCTTGTCGTGGTTTTTGTTCAAA 57.877 34.783 0.00 0.00 0.00 2.69
2968 4022 4.918583 TCTTGTCGTGGTTTTTGTTCAAAC 59.081 37.500 0.00 0.00 36.12 2.93
2969 4023 4.238761 TGTCGTGGTTTTTGTTCAAACA 57.761 36.364 0.00 0.00 38.25 2.83
2970 4024 4.617959 TGTCGTGGTTTTTGTTCAAACAA 58.382 34.783 4.24 4.24 46.35 2.83
2983 4037 6.055231 TGTTCAAACAAGAACTATGGAACG 57.945 37.500 8.13 0.00 46.19 3.95
2984 4038 5.008217 TGTTCAAACAAGAACTATGGAACGG 59.992 40.000 8.13 0.00 46.19 4.44
2985 4039 4.963373 TCAAACAAGAACTATGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
2986 4040 4.994852 TCAAACAAGAACTATGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
2987 4041 3.611766 ACAAGAACTATGGAACGGAGG 57.388 47.619 0.00 0.00 0.00 4.30
2988 4042 2.236395 ACAAGAACTATGGAACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3032 4095 6.223852 ACTGTTGATCGTTCTTACAGTCAAT 58.776 36.000 19.94 6.69 40.89 2.57
3033 4096 6.706270 ACTGTTGATCGTTCTTACAGTCAATT 59.294 34.615 19.94 6.45 40.89 2.32
3050 4113 7.011773 CAGTCAATTAAGTGTTCGAGAATGTG 58.988 38.462 2.43 0.00 0.00 3.21
3113 4176 8.924511 AAGAATCTAAAATTGTTGACTCTCCA 57.075 30.769 0.00 0.00 0.00 3.86
3116 4179 8.641498 AATCTAAAATTGTTGACTCTCCATGT 57.359 30.769 0.00 0.00 0.00 3.21
3117 4180 7.439157 TCTAAAATTGTTGACTCTCCATGTG 57.561 36.000 0.00 0.00 0.00 3.21
3197 4260 3.053991 TGGAAACAAAGGACTGGAAGACA 60.054 43.478 0.00 0.00 37.44 3.41
3395 4458 6.748132 ACATTGTGTTAGAAGTGAAAATGGG 58.252 36.000 0.00 0.00 0.00 4.00
3432 4495 1.688197 CTTTTGGTGCAGTGGTGGAAT 59.312 47.619 0.00 0.00 0.00 3.01
3480 4543 1.630878 GGGAAGAGCAGAGGGAAAGAA 59.369 52.381 0.00 0.00 0.00 2.52
3490 4553 4.873259 GCAGAGGGAAAGAACAATCTACTC 59.127 45.833 0.00 0.00 33.77 2.59
3495 4558 3.942115 GGAAAGAACAATCTACTCTGCCC 59.058 47.826 0.00 0.00 33.77 5.36
3602 4665 3.336468 AGTACTCTGAGGTGTCGTAGTG 58.664 50.000 9.85 0.00 0.00 2.74
3609 4672 3.199677 TGAGGTGTCGTAGTGTTTTTGG 58.800 45.455 0.00 0.00 0.00 3.28
3619 4682 8.671921 TGTCGTAGTGTTTTTGGTTTTGTTATA 58.328 29.630 0.00 0.00 0.00 0.98
3620 4683 9.667989 GTCGTAGTGTTTTTGGTTTTGTTATAT 57.332 29.630 0.00 0.00 0.00 0.86
3642 4705 5.209818 TCTGAACTACACCCTGTACTTTG 57.790 43.478 0.00 0.00 0.00 2.77
3707 4770 8.317679 ACAGATAAATAGAGTGCTTCTGTTCTT 58.682 33.333 0.00 0.00 39.28 2.52
3753 4816 9.474920 TGGAATTCAGAAAACACATGTATTTTC 57.525 29.630 27.31 27.31 42.58 2.29
3771 4834 5.375417 TTTTCATAGACAACACAGGCATG 57.625 39.130 0.00 0.00 0.00 4.06
3804 4883 4.919653 CACAGAGCGTGCCTACAT 57.080 55.556 0.00 0.00 39.19 2.29
3824 4903 1.790755 ACAGATTGCTGCGTTCGTTA 58.209 45.000 0.00 0.00 46.26 3.18
3825 4904 1.459592 ACAGATTGCTGCGTTCGTTAC 59.540 47.619 0.00 0.00 46.26 2.50
3863 4966 1.972223 CACGGACAGGAGACGGACT 60.972 63.158 0.00 0.00 0.00 3.85
3864 4967 1.674980 ACGGACAGGAGACGGACTC 60.675 63.158 0.00 0.00 44.24 3.36
3877 4980 4.093952 GACTCGCCGTTCGTCCGA 62.094 66.667 0.00 5.47 39.67 4.55
3880 4983 3.391160 CTCGCCGTTCGTCCGATCA 62.391 63.158 0.00 0.00 39.67 2.92
3888 4991 4.873129 CGTCCGATCAGGCCCACG 62.873 72.222 0.00 0.00 40.77 4.94
3920 5023 2.582498 CGCGACATCCGGGTCTTC 60.582 66.667 0.00 0.00 44.85 2.87
3922 5025 3.014085 GCGACATCCGGGTCTTCCA 62.014 63.158 0.00 0.00 39.04 3.53
3925 5028 1.406887 CGACATCCGGGTCTTCCAAAT 60.407 52.381 0.00 0.00 35.63 2.32
3926 5029 2.017049 GACATCCGGGTCTTCCAAATG 58.983 52.381 0.00 0.00 34.92 2.32
3927 5030 0.740737 CATCCGGGTCTTCCAAATGC 59.259 55.000 0.00 0.00 34.36 3.56
3929 5032 2.406616 CCGGGTCTTCCAAATGCCG 61.407 63.158 0.00 0.00 34.36 5.69
3930 5033 2.406616 CGGGTCTTCCAAATGCCGG 61.407 63.158 0.00 0.00 34.36 6.13
3931 5034 1.304134 GGGTCTTCCAAATGCCGGT 60.304 57.895 1.90 0.00 35.00 5.28
3933 5036 0.893727 GGTCTTCCAAATGCCGGTGT 60.894 55.000 1.90 0.00 0.00 4.16
3939 5042 1.451337 CCAAATGCCGGTGTGTGTGA 61.451 55.000 1.90 0.00 0.00 3.58
4042 5148 2.926242 GTGGAAGTGGACCCCGGA 60.926 66.667 0.73 0.00 0.00 5.14
4051 5157 2.358737 GACCCCGGACAGCACAAG 60.359 66.667 0.73 0.00 0.00 3.16
4059 5165 1.666011 GACAGCACAAGGACGAGGA 59.334 57.895 0.00 0.00 0.00 3.71
4061 5167 1.115930 ACAGCACAAGGACGAGGACT 61.116 55.000 0.00 0.00 0.00 3.85
4062 5168 0.389166 CAGCACAAGGACGAGGACTC 60.389 60.000 0.00 0.00 0.00 3.36
4063 5169 0.540830 AGCACAAGGACGAGGACTCT 60.541 55.000 0.00 0.00 0.00 3.24
4064 5170 0.109039 GCACAAGGACGAGGACTCTC 60.109 60.000 0.00 0.00 36.69 3.20
4088 5205 4.988598 CACGCGGCACCCTTCACT 62.989 66.667 12.47 0.00 0.00 3.41
4089 5206 4.250305 ACGCGGCACCCTTCACTT 62.250 61.111 12.47 0.00 0.00 3.16
4104 5221 3.110178 CTTTGACGTCGACGGGGC 61.110 66.667 37.89 26.73 44.95 5.80
4105 5222 3.569049 CTTTGACGTCGACGGGGCT 62.569 63.158 37.89 20.22 44.95 5.19
4106 5223 3.851845 TTTGACGTCGACGGGGCTG 62.852 63.158 37.89 13.31 44.95 4.85
4150 5268 0.315886 ACGCATGTACGTTCCAGTCA 59.684 50.000 0.00 0.00 45.75 3.41
4159 5277 0.868602 CGTTCCAGTCACGACGTGTT 60.869 55.000 26.01 13.87 40.20 3.32
4171 5289 2.079158 CGACGTGTTAGAGGTACTGGA 58.921 52.381 0.00 0.00 41.55 3.86
4176 5294 1.822990 TGTTAGAGGTACTGGAAGGCG 59.177 52.381 0.00 0.00 41.55 5.52
4191 5309 4.101448 GCGGTCATCCCAGTGCCT 62.101 66.667 0.00 0.00 0.00 4.75
4193 5311 1.746615 CGGTCATCCCAGTGCCTTG 60.747 63.158 0.00 0.00 0.00 3.61
4194 5312 1.685224 GGTCATCCCAGTGCCTTGA 59.315 57.895 0.00 0.00 0.00 3.02
4200 5319 1.302832 CCCAGTGCCTTGACCAGAC 60.303 63.158 0.00 0.00 0.00 3.51
4258 5377 1.278637 GTTTCAGTGCCGGTCGTTG 59.721 57.895 1.90 0.00 0.00 4.10
4259 5378 1.153329 TTTCAGTGCCGGTCGTTGT 60.153 52.632 1.90 0.00 0.00 3.32
4260 5379 1.433053 TTTCAGTGCCGGTCGTTGTG 61.433 55.000 1.90 0.00 0.00 3.33
4261 5380 2.279851 CAGTGCCGGTCGTTGTGA 60.280 61.111 1.90 0.00 0.00 3.58
4274 5393 1.822581 GTTGTGACTCAACGTTTGCC 58.177 50.000 0.00 0.00 45.23 4.52
4275 5394 0.375454 TTGTGACTCAACGTTTGCCG 59.625 50.000 0.00 0.00 44.03 5.69
4276 5395 0.460459 TGTGACTCAACGTTTGCCGA 60.460 50.000 0.00 0.00 40.70 5.54
4277 5396 0.232303 GTGACTCAACGTTTGCCGAG 59.768 55.000 10.80 10.80 40.70 4.63
4278 5397 0.878523 TGACTCAACGTTTGCCGAGG 60.879 55.000 15.37 0.00 40.70 4.63
4279 5398 0.599204 GACTCAACGTTTGCCGAGGA 60.599 55.000 15.37 1.06 40.70 3.71
4280 5399 0.878961 ACTCAACGTTTGCCGAGGAC 60.879 55.000 15.37 0.00 40.70 3.85
4281 5400 0.600255 CTCAACGTTTGCCGAGGACT 60.600 55.000 0.00 0.00 40.70 3.85
4282 5401 0.599204 TCAACGTTTGCCGAGGACTC 60.599 55.000 0.00 0.00 40.70 3.36
4283 5402 0.878523 CAACGTTTGCCGAGGACTCA 60.879 55.000 0.00 0.00 40.70 3.41
4284 5403 0.034896 AACGTTTGCCGAGGACTCAT 59.965 50.000 0.00 0.00 40.70 2.90
4285 5404 0.389948 ACGTTTGCCGAGGACTCATC 60.390 55.000 0.00 0.00 40.70 2.92
4286 5405 1.084370 CGTTTGCCGAGGACTCATCC 61.084 60.000 0.00 0.00 46.69 3.51
4306 5425 3.364460 CCACTGGGATACATGGTTTGA 57.636 47.619 0.00 0.00 35.59 2.69
4307 5426 3.016736 CCACTGGGATACATGGTTTGAC 58.983 50.000 0.00 0.00 35.59 3.18
4308 5427 2.677836 CACTGGGATACATGGTTTGACG 59.322 50.000 0.00 0.00 39.74 4.35
4309 5428 2.569853 ACTGGGATACATGGTTTGACGA 59.430 45.455 0.00 0.00 39.74 4.20
4310 5429 2.936498 CTGGGATACATGGTTTGACGAC 59.064 50.000 0.00 0.00 39.74 4.34
4311 5430 1.931172 GGGATACATGGTTTGACGACG 59.069 52.381 0.00 0.00 39.74 5.12
4312 5431 2.417651 GGGATACATGGTTTGACGACGA 60.418 50.000 0.00 0.00 39.74 4.20
4313 5432 2.858344 GGATACATGGTTTGACGACGAG 59.142 50.000 0.00 0.00 0.00 4.18
4314 5433 1.705256 TACATGGTTTGACGACGAGC 58.295 50.000 0.00 0.00 0.00 5.03
4315 5434 0.249699 ACATGGTTTGACGACGAGCA 60.250 50.000 0.00 0.00 0.00 4.26
4316 5435 0.163788 CATGGTTTGACGACGAGCAC 59.836 55.000 0.00 0.00 0.00 4.40
4317 5436 1.282248 ATGGTTTGACGACGAGCACG 61.282 55.000 0.00 0.76 45.75 5.34
4318 5437 1.659335 GGTTTGACGACGAGCACGA 60.659 57.895 11.40 0.00 42.66 4.35
4319 5438 1.481683 GTTTGACGACGAGCACGAC 59.518 57.895 11.40 2.74 42.66 4.34
4320 5439 1.659335 TTTGACGACGAGCACGACC 60.659 57.895 11.40 0.51 42.66 4.79
4321 5440 2.339100 TTTGACGACGAGCACGACCA 62.339 55.000 11.40 0.00 42.66 4.02
4322 5441 2.502080 GACGACGAGCACGACCAG 60.502 66.667 11.40 0.87 42.66 4.00
4323 5442 4.702081 ACGACGAGCACGACCAGC 62.702 66.667 11.40 0.00 42.66 4.85
4361 5480 4.339809 CTCGTGCGCGTGTGTGTG 62.340 66.667 20.50 0.00 39.49 3.82
4363 5482 4.918060 CGTGCGCGTGTGTGTGTG 62.918 66.667 12.43 0.00 0.00 3.82
4366 5485 4.649954 GCGCGTGTGTGTGTGCTC 62.650 66.667 8.43 0.00 38.52 4.26
4367 5486 4.000557 CGCGTGTGTGTGTGCTCC 62.001 66.667 0.00 0.00 0.00 4.70
4368 5487 2.894879 GCGTGTGTGTGTGCTCCA 60.895 61.111 0.00 0.00 0.00 3.86
4369 5488 2.885676 GCGTGTGTGTGTGCTCCAG 61.886 63.158 0.00 0.00 0.00 3.86
4370 5489 1.521457 CGTGTGTGTGTGCTCCAGT 60.521 57.895 0.00 0.00 0.00 4.00
4371 5490 1.765161 CGTGTGTGTGTGCTCCAGTG 61.765 60.000 0.00 0.00 0.00 3.66
4372 5491 1.819208 TGTGTGTGTGCTCCAGTGC 60.819 57.895 0.00 0.00 0.00 4.40
4373 5492 2.203195 TGTGTGTGCTCCAGTGCC 60.203 61.111 0.00 0.00 0.00 5.01
4374 5493 2.203195 GTGTGTGCTCCAGTGCCA 60.203 61.111 0.00 0.00 0.00 4.92
4375 5494 1.601759 GTGTGTGCTCCAGTGCCAT 60.602 57.895 0.00 0.00 0.00 4.40
4376 5495 1.302752 TGTGTGCTCCAGTGCCATC 60.303 57.895 0.00 0.00 0.00 3.51
4377 5496 1.302752 GTGTGCTCCAGTGCCATCA 60.303 57.895 0.00 0.00 0.00 3.07
4378 5497 1.302752 TGTGCTCCAGTGCCATCAC 60.303 57.895 0.00 0.00 43.44 3.06
4379 5498 1.302752 GTGCTCCAGTGCCATCACA 60.303 57.895 0.00 0.00 45.49 3.58
4380 5499 1.302752 TGCTCCAGTGCCATCACAC 60.303 57.895 0.00 0.00 45.49 3.82
4381 5500 2.393768 GCTCCAGTGCCATCACACG 61.394 63.158 0.00 0.00 45.49 4.49
4382 5501 1.293179 CTCCAGTGCCATCACACGA 59.707 57.895 0.00 0.00 45.49 4.35
4383 5502 0.738762 CTCCAGTGCCATCACACGAG 60.739 60.000 0.00 0.00 45.49 4.18
4384 5503 2.393768 CCAGTGCCATCACACGAGC 61.394 63.158 0.00 0.00 45.49 5.03
4385 5504 2.046892 AGTGCCATCACACGAGCC 60.047 61.111 0.00 0.00 45.49 4.70
4386 5505 3.490759 GTGCCATCACACGAGCCG 61.491 66.667 0.00 0.00 42.66 5.52
4397 5516 4.812476 CGAGCCGCCCGTGATGAA 62.812 66.667 0.00 0.00 0.00 2.57
4398 5517 2.892425 GAGCCGCCCGTGATGAAG 60.892 66.667 0.00 0.00 0.00 3.02
4399 5518 4.473520 AGCCGCCCGTGATGAAGG 62.474 66.667 0.00 0.00 0.00 3.46
4400 5519 4.467084 GCCGCCCGTGATGAAGGA 62.467 66.667 0.00 0.00 0.00 3.36
4401 5520 2.202932 CCGCCCGTGATGAAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
4402 5521 2.721167 CCGCCCGTGATGAAGGAGA 61.721 63.158 0.00 0.00 0.00 3.71
4403 5522 1.218047 CGCCCGTGATGAAGGAGAA 59.782 57.895 0.00 0.00 0.00 2.87
4404 5523 0.807667 CGCCCGTGATGAAGGAGAAG 60.808 60.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.696426 GATGATCGCCAGCGTCGC 61.696 66.667 9.80 9.80 40.74 5.19
256 257 6.774354 TTAATTTGGTACACGACTCACTTC 57.226 37.500 0.00 0.00 39.29 3.01
267 268 7.816995 GCATTCTTGGTTGATTAATTTGGTACA 59.183 33.333 0.00 0.00 0.00 2.90
269 270 7.816995 GTGCATTCTTGGTTGATTAATTTGGTA 59.183 33.333 0.00 0.00 0.00 3.25
276 290 3.505680 AGCGTGCATTCTTGGTTGATTAA 59.494 39.130 0.00 0.00 0.00 1.40
325 339 4.523173 CAGAATTCCAGATCCAATCCCATG 59.477 45.833 0.65 0.00 0.00 3.66
326 340 4.448787 CCAGAATTCCAGATCCAATCCCAT 60.449 45.833 0.65 0.00 0.00 4.00
327 341 3.117398 CCAGAATTCCAGATCCAATCCCA 60.117 47.826 0.65 0.00 0.00 4.37
328 342 3.139025 TCCAGAATTCCAGATCCAATCCC 59.861 47.826 0.65 0.00 0.00 3.85
329 343 4.443978 TCCAGAATTCCAGATCCAATCC 57.556 45.455 0.65 0.00 0.00 3.01
330 344 4.217983 GCATCCAGAATTCCAGATCCAATC 59.782 45.833 0.65 0.00 0.00 2.67
331 345 4.150359 GCATCCAGAATTCCAGATCCAAT 58.850 43.478 0.65 0.00 0.00 3.16
332 346 3.559069 GCATCCAGAATTCCAGATCCAA 58.441 45.455 0.65 0.00 0.00 3.53
333 347 2.486013 CGCATCCAGAATTCCAGATCCA 60.486 50.000 0.65 0.00 0.00 3.41
334 348 2.149578 CGCATCCAGAATTCCAGATCC 58.850 52.381 0.65 0.00 0.00 3.36
335 349 2.805099 GTCGCATCCAGAATTCCAGATC 59.195 50.000 0.65 0.00 0.00 2.75
336 350 2.804572 CGTCGCATCCAGAATTCCAGAT 60.805 50.000 0.65 1.85 0.00 2.90
337 351 1.471501 CGTCGCATCCAGAATTCCAGA 60.472 52.381 0.65 0.00 0.00 3.86
338 352 0.933097 CGTCGCATCCAGAATTCCAG 59.067 55.000 0.65 0.00 0.00 3.86
339 353 0.461870 CCGTCGCATCCAGAATTCCA 60.462 55.000 0.65 0.00 0.00 3.53
340 354 0.462047 ACCGTCGCATCCAGAATTCC 60.462 55.000 0.65 0.00 0.00 3.01
341 355 2.218953 TACCGTCGCATCCAGAATTC 57.781 50.000 0.00 0.00 0.00 2.17
342 356 2.093658 AGTTACCGTCGCATCCAGAATT 60.094 45.455 0.00 0.00 0.00 2.17
343 357 1.480954 AGTTACCGTCGCATCCAGAAT 59.519 47.619 0.00 0.00 0.00 2.40
344 358 0.892755 AGTTACCGTCGCATCCAGAA 59.107 50.000 0.00 0.00 0.00 3.02
576 596 2.119495 GCCCTTACTGATCCTTCTCCA 58.881 52.381 0.00 0.00 0.00 3.86
600 620 1.345063 ACACCCCTACACTACACACC 58.655 55.000 0.00 0.00 0.00 4.16
614 634 2.354805 GGTAGATCTCACACCAACACCC 60.355 54.545 0.00 0.00 32.32 4.61
822 842 5.068198 TCCTAACGAGGCTTACGTATTCAAT 59.932 40.000 1.42 0.00 43.40 2.57
847 867 4.225208 GACGTACTTTCAGAAACTACGCT 58.775 43.478 23.92 15.94 36.96 5.07
853 873 4.605573 GCTCGTTGACGTACTTTCAGAAAC 60.606 45.833 3.25 0.00 40.80 2.78
856 876 2.658285 GCTCGTTGACGTACTTTCAGA 58.342 47.619 3.25 0.00 40.80 3.27
1041 1062 1.599047 CTGAGGATGGTTGCCGTCT 59.401 57.895 7.25 0.00 39.36 4.18
1047 1068 3.196469 TCTTAGACAGCTGAGGATGGTTG 59.804 47.826 23.35 1.39 32.48 3.77
1052 1073 1.680735 CGCTCTTAGACAGCTGAGGAT 59.319 52.381 23.35 5.34 34.45 3.24
1056 1077 1.137614 CGCGCTCTTAGACAGCTGA 59.862 57.895 23.35 0.00 34.45 4.26
1520 1547 5.657499 GTGCATACGAGCTAGTTTAAATCG 58.343 41.667 4.33 6.61 39.22 3.34
1622 1649 5.970501 AAATATTTAGGAACGGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85
1623 1650 8.919777 ATAAAAATATTTAGGAACGGAGGGAG 57.080 34.615 0.01 0.00 34.62 4.30
1624 1651 9.703677 AAATAAAAATATTTAGGAACGGAGGGA 57.296 29.630 0.01 0.00 34.62 4.20
1647 1674 8.244113 GGTAGTCCATTTGAAATCTTCGAAAAT 58.756 33.333 0.00 0.00 36.68 1.82
1648 1675 7.229707 TGGTAGTCCATTTGAAATCTTCGAAAA 59.770 33.333 0.00 0.00 39.03 2.29
1649 1676 6.712998 TGGTAGTCCATTTGAAATCTTCGAAA 59.287 34.615 0.00 0.00 39.03 3.46
1650 1677 6.148811 GTGGTAGTCCATTTGAAATCTTCGAA 59.851 38.462 0.00 0.00 46.20 3.71
1651 1678 5.642063 GTGGTAGTCCATTTGAAATCTTCGA 59.358 40.000 0.00 0.00 46.20 3.71
1652 1679 5.411361 TGTGGTAGTCCATTTGAAATCTTCG 59.589 40.000 0.00 0.00 46.20 3.79
1653 1680 6.817765 TGTGGTAGTCCATTTGAAATCTTC 57.182 37.500 0.00 0.00 46.20 2.87
1654 1681 7.888021 TGTATGTGGTAGTCCATTTGAAATCTT 59.112 33.333 0.00 0.00 46.20 2.40
1655 1682 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
1656 1683 7.624360 TGTATGTGGTAGTCCATTTGAAATC 57.376 36.000 0.00 0.00 46.20 2.17
1657 1684 8.415950 TTTGTATGTGGTAGTCCATTTGAAAT 57.584 30.769 0.00 0.00 46.20 2.17
1658 1685 7.825331 TTTGTATGTGGTAGTCCATTTGAAA 57.175 32.000 0.00 0.00 46.20 2.69
1659 1686 7.450014 ACATTTGTATGTGGTAGTCCATTTGAA 59.550 33.333 0.00 0.00 46.20 2.69
1660 1687 6.945435 ACATTTGTATGTGGTAGTCCATTTGA 59.055 34.615 0.00 0.00 46.20 2.69
1661 1688 7.156876 ACATTTGTATGTGGTAGTCCATTTG 57.843 36.000 0.00 0.00 46.20 2.32
1698 1725 8.668353 GCACAATGAATGAATCTACACTCTAAA 58.332 33.333 0.00 0.00 0.00 1.85
1699 1726 8.043113 AGCACAATGAATGAATCTACACTCTAA 58.957 33.333 0.00 0.00 0.00 2.10
1700 1727 7.559486 AGCACAATGAATGAATCTACACTCTA 58.441 34.615 0.00 0.00 0.00 2.43
1701 1728 6.413052 AGCACAATGAATGAATCTACACTCT 58.587 36.000 0.00 0.00 0.00 3.24
1702 1729 6.238320 GGAGCACAATGAATGAATCTACACTC 60.238 42.308 0.00 0.00 0.00 3.51
1703 1730 5.587844 GGAGCACAATGAATGAATCTACACT 59.412 40.000 0.00 0.00 0.00 3.55
1704 1731 5.503031 CGGAGCACAATGAATGAATCTACAC 60.503 44.000 0.00 0.00 0.00 2.90
1705 1732 4.571984 CGGAGCACAATGAATGAATCTACA 59.428 41.667 0.00 0.00 0.00 2.74
1706 1733 4.572389 ACGGAGCACAATGAATGAATCTAC 59.428 41.667 0.00 0.00 0.00 2.59
1707 1734 4.769688 ACGGAGCACAATGAATGAATCTA 58.230 39.130 0.00 0.00 0.00 1.98
1708 1735 3.614092 ACGGAGCACAATGAATGAATCT 58.386 40.909 0.00 0.00 0.00 2.40
1709 1736 5.008019 ACATACGGAGCACAATGAATGAATC 59.992 40.000 0.00 0.00 0.00 2.52
1710 1737 4.883585 ACATACGGAGCACAATGAATGAAT 59.116 37.500 0.00 0.00 0.00 2.57
1711 1738 4.260985 ACATACGGAGCACAATGAATGAA 58.739 39.130 0.00 0.00 0.00 2.57
1712 1739 3.872696 ACATACGGAGCACAATGAATGA 58.127 40.909 0.00 0.00 0.00 2.57
1713 1740 4.811024 ACTACATACGGAGCACAATGAATG 59.189 41.667 0.00 0.00 0.00 2.67
1714 1741 5.023533 ACTACATACGGAGCACAATGAAT 57.976 39.130 0.00 0.00 0.00 2.57
1715 1742 4.081917 TGACTACATACGGAGCACAATGAA 60.082 41.667 0.00 0.00 0.00 2.57
1716 1743 3.445805 TGACTACATACGGAGCACAATGA 59.554 43.478 0.00 0.00 0.00 2.57
1717 1744 3.780902 TGACTACATACGGAGCACAATG 58.219 45.455 0.00 0.00 0.00 2.82
1718 1745 4.465632 TTGACTACATACGGAGCACAAT 57.534 40.909 0.00 0.00 0.00 2.71
1719 1746 3.945981 TTGACTACATACGGAGCACAA 57.054 42.857 0.00 0.00 0.00 3.33
1720 1747 4.180817 CAATTGACTACATACGGAGCACA 58.819 43.478 0.00 0.00 0.00 4.57
1721 1748 4.181578 ACAATTGACTACATACGGAGCAC 58.818 43.478 13.59 0.00 0.00 4.40
1722 1749 4.465632 ACAATTGACTACATACGGAGCA 57.534 40.909 13.59 0.00 0.00 4.26
1723 1750 4.868171 TCAACAATTGACTACATACGGAGC 59.132 41.667 13.59 0.00 34.08 4.70
1724 1751 6.961359 TTCAACAATTGACTACATACGGAG 57.039 37.500 13.59 0.00 39.87 4.63
1725 1752 7.822334 AGATTTCAACAATTGACTACATACGGA 59.178 33.333 13.59 0.00 39.87 4.69
1726 1753 7.974675 AGATTTCAACAATTGACTACATACGG 58.025 34.615 13.59 0.00 39.87 4.02
1727 1754 9.825972 AAAGATTTCAACAATTGACTACATACG 57.174 29.630 13.59 0.00 39.87 3.06
1730 1757 8.859090 TCCAAAGATTTCAACAATTGACTACAT 58.141 29.630 13.59 0.00 39.87 2.29
1731 1758 8.231692 TCCAAAGATTTCAACAATTGACTACA 57.768 30.769 13.59 0.00 39.87 2.74
1732 1759 9.528018 TTTCCAAAGATTTCAACAATTGACTAC 57.472 29.630 13.59 0.00 39.87 2.73
1733 1760 9.748708 CTTTCCAAAGATTTCAACAATTGACTA 57.251 29.630 13.59 0.00 37.53 2.59
1734 1761 8.477256 TCTTTCCAAAGATTTCAACAATTGACT 58.523 29.630 13.59 0.00 39.95 3.41
1735 1762 8.542953 GTCTTTCCAAAGATTTCAACAATTGAC 58.457 33.333 13.59 0.00 45.83 3.18
1736 1763 8.256605 TGTCTTTCCAAAGATTTCAACAATTGA 58.743 29.630 13.59 0.00 45.83 2.57
1737 1764 8.422973 TGTCTTTCCAAAGATTTCAACAATTG 57.577 30.769 3.24 3.24 45.83 2.32
1739 1766 9.696917 GTATGTCTTTCCAAAGATTTCAACAAT 57.303 29.630 5.07 0.00 45.83 2.71
1740 1767 8.690884 TGTATGTCTTTCCAAAGATTTCAACAA 58.309 29.630 5.07 0.00 45.83 2.83
1741 1768 8.231692 TGTATGTCTTTCCAAAGATTTCAACA 57.768 30.769 5.07 4.12 45.83 3.33
1742 1769 9.696917 AATGTATGTCTTTCCAAAGATTTCAAC 57.303 29.630 5.07 1.99 45.83 3.18
1750 1777 9.329913 CGTTTCTAAATGTATGTCTTTCCAAAG 57.670 33.333 0.00 0.00 37.36 2.77
1751 1778 8.293867 CCGTTTCTAAATGTATGTCTTTCCAAA 58.706 33.333 0.00 0.00 0.00 3.28
1752 1779 7.662258 TCCGTTTCTAAATGTATGTCTTTCCAA 59.338 33.333 0.00 0.00 0.00 3.53
1753 1780 7.162761 TCCGTTTCTAAATGTATGTCTTTCCA 58.837 34.615 0.00 0.00 0.00 3.53
1754 1781 7.201617 CCTCCGTTTCTAAATGTATGTCTTTCC 60.202 40.741 0.00 0.00 0.00 3.13
1755 1782 7.201617 CCCTCCGTTTCTAAATGTATGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
1756 1783 6.598064 CCCTCCGTTTCTAAATGTATGTCTTT 59.402 38.462 0.00 0.00 0.00 2.52
1757 1784 6.070424 TCCCTCCGTTTCTAAATGTATGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
1758 1785 5.424252 TCCCTCCGTTTCTAAATGTATGTCT 59.576 40.000 0.00 0.00 0.00 3.41
1759 1786 5.667466 TCCCTCCGTTTCTAAATGTATGTC 58.333 41.667 0.00 0.00 0.00 3.06
1760 1787 5.189145 ACTCCCTCCGTTTCTAAATGTATGT 59.811 40.000 0.00 0.00 0.00 2.29
1761 1788 5.671493 ACTCCCTCCGTTTCTAAATGTATG 58.329 41.667 0.00 0.00 0.00 2.39
1762 1789 5.952347 ACTCCCTCCGTTTCTAAATGTAT 57.048 39.130 0.00 0.00 0.00 2.29
1763 1790 7.427989 AATACTCCCTCCGTTTCTAAATGTA 57.572 36.000 0.00 0.00 0.00 2.29
1764 1791 5.952347 ATACTCCCTCCGTTTCTAAATGT 57.048 39.130 0.00 0.00 0.00 2.71
1765 1792 6.598064 ACAAATACTCCCTCCGTTTCTAAATG 59.402 38.462 0.00 0.00 0.00 2.32
1766 1793 6.718294 ACAAATACTCCCTCCGTTTCTAAAT 58.282 36.000 0.00 0.00 0.00 1.40
1767 1794 6.117975 ACAAATACTCCCTCCGTTTCTAAA 57.882 37.500 0.00 0.00 0.00 1.85
1768 1795 5.750352 ACAAATACTCCCTCCGTTTCTAA 57.250 39.130 0.00 0.00 0.00 2.10
1769 1796 5.246656 TGAACAAATACTCCCTCCGTTTCTA 59.753 40.000 0.00 0.00 0.00 2.10
1770 1797 4.041198 TGAACAAATACTCCCTCCGTTTCT 59.959 41.667 0.00 0.00 0.00 2.52
1771 1798 4.320870 TGAACAAATACTCCCTCCGTTTC 58.679 43.478 0.00 0.00 0.00 2.78
1772 1799 4.360951 TGAACAAATACTCCCTCCGTTT 57.639 40.909 0.00 0.00 0.00 3.60
1773 1800 4.360951 TTGAACAAATACTCCCTCCGTT 57.639 40.909 0.00 0.00 0.00 4.44
1774 1801 4.569719 ATTGAACAAATACTCCCTCCGT 57.430 40.909 0.00 0.00 0.00 4.69
1775 1802 6.765989 TGAATATTGAACAAATACTCCCTCCG 59.234 38.462 0.00 0.00 33.53 4.63
1776 1803 7.993183 TCTGAATATTGAACAAATACTCCCTCC 59.007 37.037 0.00 0.00 33.53 4.30
1777 1804 8.964476 TCTGAATATTGAACAAATACTCCCTC 57.036 34.615 0.00 0.00 33.53 4.30
1882 1954 7.491682 AGGCCATGTCACAAATTATATTTCAC 58.508 34.615 5.01 0.00 0.00 3.18
1956 2051 8.902540 TCACACCCATGATTAACAATATAGAC 57.097 34.615 0.00 0.00 0.00 2.59
2000 2097 5.682234 TGCTCTGGATGTTTCAGATAGAA 57.318 39.130 0.00 0.00 40.07 2.10
2152 3058 5.047306 TCACAGTTCGGATGTTTACTCAGAT 60.047 40.000 0.00 0.00 0.00 2.90
2232 3138 1.412710 GTCAACCATAGATGAGCCGGA 59.587 52.381 5.05 0.00 0.00 5.14
2430 3336 4.280929 CGATCCACTAGACCACCAATGATA 59.719 45.833 0.00 0.00 0.00 2.15
2694 3748 5.117406 TCTAGGCATCTTAGTCACAGAGA 57.883 43.478 0.00 0.00 0.00 3.10
2702 3756 8.023021 TCATAACAACATCTAGGCATCTTAGT 57.977 34.615 0.00 0.00 0.00 2.24
2734 3788 8.040132 CCCAAAGCTGTCCATATTATTTGAAAA 58.960 33.333 0.00 0.00 0.00 2.29
2815 3869 6.490040 AGCAAAAACATGTGTGGTATACTTCT 59.510 34.615 0.00 0.00 0.00 2.85
2819 3873 6.007936 TCAGCAAAAACATGTGTGGTATAC 57.992 37.500 0.00 0.00 0.00 1.47
2931 3985 5.220854 CCACGACAAGAATTATGGAATGGAC 60.221 44.000 0.00 0.00 0.00 4.02
2934 3988 5.818136 ACCACGACAAGAATTATGGAATG 57.182 39.130 0.00 0.00 0.00 2.67
2935 3989 6.834168 AAACCACGACAAGAATTATGGAAT 57.166 33.333 0.00 0.00 0.00 3.01
2960 4014 5.008217 CCGTTCCATAGTTCTTGTTTGAACA 59.992 40.000 9.56 0.00 46.19 3.18
2967 4021 2.236395 CCCTCCGTTCCATAGTTCTTGT 59.764 50.000 0.00 0.00 0.00 3.16
2968 4022 2.500098 TCCCTCCGTTCCATAGTTCTTG 59.500 50.000 0.00 0.00 0.00 3.02
2969 4023 2.766828 CTCCCTCCGTTCCATAGTTCTT 59.233 50.000 0.00 0.00 0.00 2.52
2970 4024 2.292323 ACTCCCTCCGTTCCATAGTTCT 60.292 50.000 0.00 0.00 0.00 3.01
2971 4025 2.108970 ACTCCCTCCGTTCCATAGTTC 58.891 52.381 0.00 0.00 0.00 3.01
2972 4026 2.249309 ACTCCCTCCGTTCCATAGTT 57.751 50.000 0.00 0.00 0.00 2.24
2973 4027 2.024655 TGTACTCCCTCCGTTCCATAGT 60.025 50.000 0.00 0.00 0.00 2.12
2974 4028 2.662866 TGTACTCCCTCCGTTCCATAG 58.337 52.381 0.00 0.00 0.00 2.23
2975 4029 2.832643 TGTACTCCCTCCGTTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
2976 4030 1.946984 TTGTACTCCCTCCGTTCCAT 58.053 50.000 0.00 0.00 0.00 3.41
2977 4031 1.719529 TTTGTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
2978 4032 2.224354 TGTTTTGTACTCCCTCCGTTCC 60.224 50.000 0.00 0.00 0.00 3.62
2979 4033 3.116079 TGTTTTGTACTCCCTCCGTTC 57.884 47.619 0.00 0.00 0.00 3.95
2980 4034 3.118149 ACTTGTTTTGTACTCCCTCCGTT 60.118 43.478 0.00 0.00 0.00 4.44
2981 4035 2.436911 ACTTGTTTTGTACTCCCTCCGT 59.563 45.455 0.00 0.00 0.00 4.69
2982 4036 3.121738 ACTTGTTTTGTACTCCCTCCG 57.878 47.619 0.00 0.00 0.00 4.63
2983 4037 4.204799 ACAACTTGTTTTGTACTCCCTCC 58.795 43.478 0.00 0.00 37.96 4.30
2984 4038 4.879545 TGACAACTTGTTTTGTACTCCCTC 59.120 41.667 0.00 0.00 39.88 4.30
2985 4039 4.850680 TGACAACTTGTTTTGTACTCCCT 58.149 39.130 0.00 0.00 39.88 4.20
2986 4040 5.124936 AGTTGACAACTTGTTTTGTACTCCC 59.875 40.000 15.23 0.00 39.88 4.30
2987 4041 6.027749 CAGTTGACAACTTGTTTTGTACTCC 58.972 40.000 18.27 0.00 39.88 3.85
2988 4042 6.608610 ACAGTTGACAACTTGTTTTGTACTC 58.391 36.000 18.27 0.00 39.88 2.59
3032 4095 7.431249 AGACTAACACATTCTCGAACACTTAA 58.569 34.615 0.00 0.00 0.00 1.85
3033 4096 6.978338 AGACTAACACATTCTCGAACACTTA 58.022 36.000 0.00 0.00 0.00 2.24
3050 4113 3.075148 GTCCTCCAAAGCCAAGACTAAC 58.925 50.000 0.00 0.00 0.00 2.34
3102 4165 6.108687 TGATCAATACACATGGAGAGTCAAC 58.891 40.000 0.00 0.00 0.00 3.18
3113 4176 9.547753 GTAAGAACCTACATGATCAATACACAT 57.452 33.333 0.00 0.00 0.00 3.21
3116 4179 8.758829 ACTGTAAGAACCTACATGATCAATACA 58.241 33.333 0.00 3.62 37.43 2.29
3117 4180 9.250624 GACTGTAAGAACCTACATGATCAATAC 57.749 37.037 0.00 0.00 37.43 1.89
3197 4260 3.698040 GTGGGATCACATGAAAGAATGCT 59.302 43.478 0.00 0.00 43.13 3.79
3395 4458 7.752686 GCACCAAAAGAGTGATTCTAAGATTTC 59.247 37.037 0.00 0.00 37.42 2.17
3432 4495 6.791371 AGATAATAACCTATCCAGGAGTCGA 58.209 40.000 0.00 0.00 45.91 4.20
3480 4543 1.204941 GTCGTGGGCAGAGTAGATTGT 59.795 52.381 0.00 0.00 0.00 2.71
3490 4553 2.868583 CTCATATTTCAGTCGTGGGCAG 59.131 50.000 0.00 0.00 0.00 4.85
3495 4558 5.689514 GGAGATGACTCATATTTCAGTCGTG 59.310 44.000 5.90 0.00 44.22 4.35
3546 4609 4.395625 ACCTAGGTAAACAAAGCAGTTCC 58.604 43.478 14.41 0.00 0.00 3.62
3609 4672 8.665685 CAGGGTGTAGTTCAGATATAACAAAAC 58.334 37.037 0.00 0.00 0.00 2.43
3619 4682 5.280011 CCAAAGTACAGGGTGTAGTTCAGAT 60.280 44.000 7.45 0.00 43.51 2.90
3620 4683 4.039973 CCAAAGTACAGGGTGTAGTTCAGA 59.960 45.833 7.45 0.00 43.51 3.27
3642 4705 4.525949 GCTTCCTCCGGCCGTACC 62.526 72.222 26.12 0.71 0.00 3.34
3659 4722 3.978855 TGCTGTTATACTATAGCGCGTTG 59.021 43.478 8.43 0.00 38.96 4.10
3670 4733 9.973450 CACTCTATTTATCTGTGCTGTTATACT 57.027 33.333 0.00 0.00 0.00 2.12
3707 4770 8.884124 ATTCCAAGAGAAAACCATCAAAGATA 57.116 30.769 0.00 0.00 38.21 1.98
3753 4816 5.235831 CAGATACATGCCTGTGTTGTCTATG 59.764 44.000 4.73 0.00 36.79 2.23
3771 4834 5.220303 CGCTCTGTGTTTCTAAAGCAGATAC 60.220 44.000 8.95 5.68 36.18 2.24
3804 4883 1.790755 AACGAACGCAGCAATCTGTA 58.209 45.000 0.00 0.00 42.29 2.74
3824 4903 1.478510 TGACGCAAAACCATGGTTTGT 59.521 42.857 37.14 30.28 46.22 2.83
3825 4904 1.857837 GTGACGCAAAACCATGGTTTG 59.142 47.619 37.14 29.63 46.22 2.93
3863 4966 3.391160 CTGATCGGACGAACGGCGA 62.391 63.158 16.62 0.00 44.57 5.54
3918 5021 0.753479 ACACACACCGGCATTTGGAA 60.753 50.000 0.00 0.00 0.00 3.53
3920 5023 1.007502 CACACACACCGGCATTTGG 60.008 57.895 0.00 0.00 0.00 3.28
3922 5025 1.172180 CCTCACACACACCGGCATTT 61.172 55.000 0.00 0.00 0.00 2.32
3925 5028 4.927782 GCCTCACACACACCGGCA 62.928 66.667 0.00 0.00 40.41 5.69
3959 5065 2.526873 ACGGGGAGCAGAGTGGTT 60.527 61.111 0.00 0.00 0.00 3.67
3984 5090 0.111639 GGTGGACTAGGGTTTTGCCA 59.888 55.000 0.00 0.00 39.65 4.92
4017 5123 2.037121 GGGTCCACTTCCACAAAATTGG 59.963 50.000 0.00 0.00 38.10 3.16
4022 5128 1.149627 CGGGGTCCACTTCCACAAA 59.850 57.895 0.00 0.00 0.00 2.83
4042 5148 1.115930 AGTCCTCGTCCTTGTGCTGT 61.116 55.000 0.00 0.00 0.00 4.40
4072 5189 3.767630 AAAGTGAAGGGTGCCGCGT 62.768 57.895 4.92 0.00 0.00 6.01
4088 5205 3.608662 AGCCCCGTCGACGTCAAA 61.609 61.111 33.49 0.00 37.74 2.69
4089 5206 4.351938 CAGCCCCGTCGACGTCAA 62.352 66.667 33.49 0.00 37.74 3.18
4150 5268 1.808945 CCAGTACCTCTAACACGTCGT 59.191 52.381 0.00 0.00 0.00 4.34
4159 5277 0.333993 ACCGCCTTCCAGTACCTCTA 59.666 55.000 0.00 0.00 0.00 2.43
4171 5289 2.671070 CACTGGGATGACCGCCTT 59.329 61.111 0.00 0.00 44.64 4.35
4176 5294 0.678048 GTCAAGGCACTGGGATGACC 60.678 60.000 0.00 0.00 40.86 4.02
4191 5309 1.436195 GCAGTTGCACGTCTGGTCAA 61.436 55.000 12.54 0.00 41.59 3.18
4193 5311 2.607892 GGCAGTTGCACGTCTGGTC 61.608 63.158 6.43 0.58 44.36 4.02
4194 5312 2.591715 GGCAGTTGCACGTCTGGT 60.592 61.111 6.43 0.00 44.36 4.00
4258 5377 0.232303 CTCGGCAAACGTTGAGTCAC 59.768 55.000 0.00 0.00 44.69 3.67
4259 5378 0.878523 CCTCGGCAAACGTTGAGTCA 60.879 55.000 0.00 0.00 44.69 3.41
4260 5379 0.599204 TCCTCGGCAAACGTTGAGTC 60.599 55.000 0.00 0.00 44.69 3.36
4261 5380 0.878961 GTCCTCGGCAAACGTTGAGT 60.879 55.000 0.00 0.00 44.69 3.41
4262 5381 0.600255 AGTCCTCGGCAAACGTTGAG 60.600 55.000 0.00 3.80 44.69 3.02
4263 5382 0.599204 GAGTCCTCGGCAAACGTTGA 60.599 55.000 0.00 0.00 44.69 3.18
4264 5383 0.878523 TGAGTCCTCGGCAAACGTTG 60.879 55.000 0.00 0.00 44.69 4.10
4265 5384 0.034896 ATGAGTCCTCGGCAAACGTT 59.965 50.000 0.00 0.00 44.69 3.99
4266 5385 0.389948 GATGAGTCCTCGGCAAACGT 60.390 55.000 0.00 0.00 44.69 3.99
4267 5386 1.084370 GGATGAGTCCTCGGCAAACG 61.084 60.000 0.00 0.00 41.60 3.60
4268 5387 0.744771 GGGATGAGTCCTCGGCAAAC 60.745 60.000 0.00 0.00 44.44 2.93
4269 5388 1.198094 TGGGATGAGTCCTCGGCAAA 61.198 55.000 0.00 0.00 44.44 3.68
4270 5389 1.612146 TGGGATGAGTCCTCGGCAA 60.612 57.895 0.00 0.00 44.44 4.52
4271 5390 2.038813 TGGGATGAGTCCTCGGCA 59.961 61.111 0.00 0.00 44.44 5.69
4272 5391 2.060980 AGTGGGATGAGTCCTCGGC 61.061 63.158 0.00 0.00 44.44 5.54
4273 5392 1.680522 CCAGTGGGATGAGTCCTCGG 61.681 65.000 0.00 0.00 44.44 4.63
4274 5393 1.819229 CCAGTGGGATGAGTCCTCG 59.181 63.158 0.00 0.00 44.44 4.63
4285 5404 2.025416 TCAAACCATGTATCCCAGTGGG 60.025 50.000 23.57 23.57 46.11 4.61
4286 5405 3.016736 GTCAAACCATGTATCCCAGTGG 58.983 50.000 0.63 0.63 37.74 4.00
4287 5406 2.677836 CGTCAAACCATGTATCCCAGTG 59.322 50.000 0.00 0.00 0.00 3.66
4288 5407 2.569853 TCGTCAAACCATGTATCCCAGT 59.430 45.455 0.00 0.00 0.00 4.00
4289 5408 2.936498 GTCGTCAAACCATGTATCCCAG 59.064 50.000 0.00 0.00 0.00 4.45
4290 5409 2.675603 CGTCGTCAAACCATGTATCCCA 60.676 50.000 0.00 0.00 0.00 4.37
4291 5410 1.931172 CGTCGTCAAACCATGTATCCC 59.069 52.381 0.00 0.00 0.00 3.85
4292 5411 2.858344 CTCGTCGTCAAACCATGTATCC 59.142 50.000 0.00 0.00 0.00 2.59
4293 5412 2.281762 GCTCGTCGTCAAACCATGTATC 59.718 50.000 0.00 0.00 0.00 2.24
4294 5413 2.268298 GCTCGTCGTCAAACCATGTAT 58.732 47.619 0.00 0.00 0.00 2.29
4295 5414 1.000052 TGCTCGTCGTCAAACCATGTA 60.000 47.619 0.00 0.00 0.00 2.29
4296 5415 0.249699 TGCTCGTCGTCAAACCATGT 60.250 50.000 0.00 0.00 0.00 3.21
4297 5416 0.163788 GTGCTCGTCGTCAAACCATG 59.836 55.000 0.00 0.00 0.00 3.66
4298 5417 1.282248 CGTGCTCGTCGTCAAACCAT 61.282 55.000 0.00 0.00 0.00 3.55
4299 5418 1.947146 CGTGCTCGTCGTCAAACCA 60.947 57.895 0.00 0.00 0.00 3.67
4300 5419 1.659335 TCGTGCTCGTCGTCAAACC 60.659 57.895 8.17 0.00 38.33 3.27
4301 5420 1.481683 GTCGTGCTCGTCGTCAAAC 59.518 57.895 8.17 0.00 38.33 2.93
4302 5421 1.659335 GGTCGTGCTCGTCGTCAAA 60.659 57.895 8.17 0.00 38.33 2.69
4303 5422 2.050714 GGTCGTGCTCGTCGTCAA 60.051 61.111 8.17 0.00 38.33 3.18
4304 5423 3.249973 CTGGTCGTGCTCGTCGTCA 62.250 63.158 8.17 2.47 38.33 4.35
4305 5424 2.502080 CTGGTCGTGCTCGTCGTC 60.502 66.667 8.17 0.00 38.33 4.20
4306 5425 4.702081 GCTGGTCGTGCTCGTCGT 62.702 66.667 8.17 0.00 38.33 4.34
4344 5463 4.339809 CACACACACGCGCACGAG 62.340 66.667 5.73 0.00 43.93 4.18
4349 5468 4.649954 GAGCACACACACACGCGC 62.650 66.667 5.73 0.00 0.00 6.86
4350 5469 4.000557 GGAGCACACACACACGCG 62.001 66.667 3.53 3.53 0.00 6.01
4351 5470 2.885676 CTGGAGCACACACACACGC 61.886 63.158 0.00 0.00 0.00 5.34
4352 5471 1.521457 ACTGGAGCACACACACACG 60.521 57.895 0.00 0.00 0.00 4.49
4353 5472 2.016961 CACTGGAGCACACACACAC 58.983 57.895 0.00 0.00 0.00 3.82
4354 5473 1.819208 GCACTGGAGCACACACACA 60.819 57.895 0.00 0.00 0.00 3.72
4355 5474 2.546494 GGCACTGGAGCACACACAC 61.546 63.158 0.00 0.00 35.83 3.82
4356 5475 2.203195 GGCACTGGAGCACACACA 60.203 61.111 0.00 0.00 35.83 3.72
4357 5476 1.580845 GATGGCACTGGAGCACACAC 61.581 60.000 0.00 0.00 35.83 3.82
4358 5477 1.302752 GATGGCACTGGAGCACACA 60.303 57.895 0.00 0.00 35.83 3.72
4359 5478 1.302752 TGATGGCACTGGAGCACAC 60.303 57.895 0.00 0.00 35.83 3.82
4360 5479 1.302752 GTGATGGCACTGGAGCACA 60.303 57.895 0.00 0.00 41.84 4.57
4361 5480 1.302752 TGTGATGGCACTGGAGCAC 60.303 57.895 0.00 0.00 45.36 4.40
4362 5481 1.302752 GTGTGATGGCACTGGAGCA 60.303 57.895 0.00 0.00 45.36 4.26
4363 5482 2.393768 CGTGTGATGGCACTGGAGC 61.394 63.158 0.00 0.00 45.36 4.70
4364 5483 0.738762 CTCGTGTGATGGCACTGGAG 60.739 60.000 0.00 0.00 45.36 3.86
4365 5484 1.293179 CTCGTGTGATGGCACTGGA 59.707 57.895 0.00 0.00 45.36 3.86
4366 5485 2.393768 GCTCGTGTGATGGCACTGG 61.394 63.158 0.00 0.00 45.36 4.00
4367 5486 2.393768 GGCTCGTGTGATGGCACTG 61.394 63.158 0.00 0.00 45.36 3.66
4368 5487 2.046892 GGCTCGTGTGATGGCACT 60.047 61.111 0.00 0.00 45.36 4.40
4369 5488 3.490759 CGGCTCGTGTGATGGCAC 61.491 66.667 0.00 0.00 45.35 5.01
4380 5499 4.812476 TTCATCACGGGCGGCTCG 62.812 66.667 22.48 22.48 0.00 5.03
4381 5500 2.892425 CTTCATCACGGGCGGCTC 60.892 66.667 9.56 0.00 0.00 4.70
4382 5501 4.473520 CCTTCATCACGGGCGGCT 62.474 66.667 9.56 0.00 0.00 5.52
4383 5502 4.467084 TCCTTCATCACGGGCGGC 62.467 66.667 0.00 0.00 0.00 6.53
4384 5503 2.202932 CTCCTTCATCACGGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
4385 5504 0.807667 CTTCTCCTTCATCACGGGCG 60.808 60.000 0.00 0.00 0.00 6.13
4386 5505 3.071580 CTTCTCCTTCATCACGGGC 57.928 57.895 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.