Multiple sequence alignment - TraesCS6B01G316300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G316300 chr6B 100.000 2809 0 0 1 2809 564218543 564215735 0.000000e+00 5188
1 TraesCS6B01G316300 chr6B 99.338 151 1 0 2479 2629 648253017 648253167 9.910000e-70 274
2 TraesCS6B01G316300 chr6D 92.094 2416 99 34 1 2390 377831322 377828973 0.000000e+00 3319
3 TraesCS6B01G316300 chr6D 85.876 177 21 2 2633 2809 377828860 377828688 4.780000e-43 185
4 TraesCS6B01G316300 chr6A 92.058 1939 95 29 1 1921 519224467 519222570 0.000000e+00 2673
5 TraesCS6B01G316300 chr6A 90.859 361 22 6 1906 2262 519222551 519222198 9.110000e-130 473
6 TraesCS6B01G316300 chr4B 100.000 150 0 0 2480 2629 81924461 81924610 7.660000e-71 278
7 TraesCS6B01G316300 chr4B 94.079 152 8 1 2479 2629 6087038 6087189 2.180000e-56 230
8 TraesCS6B01G316300 chr4B 93.038 158 9 2 2480 2636 596939077 596938921 2.180000e-56 230
9 TraesCS6B01G316300 chr1B 100.000 150 0 0 2480 2629 648992523 648992672 7.660000e-71 278
10 TraesCS6B01G316300 chr1B 97.333 150 2 1 2480 2629 615611030 615610883 1.290000e-63 254
11 TraesCS6B01G316300 chr4D 99.338 151 1 0 2479 2629 319326156 319326006 9.910000e-70 274
12 TraesCS6B01G316300 chr1A 99.333 150 1 0 2480 2629 14110949 14111098 3.570000e-69 272
13 TraesCS6B01G316300 chr3B 94.118 153 8 1 2477 2628 650646953 650647105 6.050000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G316300 chr6B 564215735 564218543 2808 True 5188 5188 100.0000 1 2809 1 chr6B.!!$R1 2808
1 TraesCS6B01G316300 chr6D 377828688 377831322 2634 True 1752 3319 88.9850 1 2809 2 chr6D.!!$R1 2808
2 TraesCS6B01G316300 chr6A 519222198 519224467 2269 True 1573 2673 91.4585 1 2262 2 chr6A.!!$R1 2261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 516 1.137614 CGCGCTCTTAGACAGCTGA 59.862 57.895 23.35 0.0 34.45 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2501 2624 0.109597 GTCCACATTTCGGCTGCAAG 60.11 55.0 0.5 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.657499 GTGCATACGAGCTAGTTTAAATCG 58.343 41.667 4.33 6.61 39.22 3.34
509 516 1.137614 CGCGCTCTTAGACAGCTGA 59.862 57.895 23.35 0.00 34.45 4.26
513 520 1.680735 CGCTCTTAGACAGCTGAGGAT 59.319 52.381 23.35 5.34 34.45 3.24
518 525 3.196469 TCTTAGACAGCTGAGGATGGTTG 59.804 47.826 23.35 1.39 32.48 3.77
524 531 1.599047 CTGAGGATGGTTGCCGTCT 59.401 57.895 7.25 0.00 39.36 4.18
575 582 2.815211 TCAGCCATCTCAACGCGC 60.815 61.111 5.73 0.00 0.00 6.86
576 583 3.869272 CAGCCATCTCAACGCGCC 61.869 66.667 5.73 0.00 0.00 6.53
709 720 2.658285 GCTCGTTGACGTACTTTCAGA 58.342 47.619 3.25 0.00 40.80 3.27
712 723 4.605573 GCTCGTTGACGTACTTTCAGAAAC 60.606 45.833 3.25 0.00 40.80 2.78
718 729 4.225208 GACGTACTTTCAGAAACTACGCT 58.775 43.478 23.92 15.94 36.96 5.07
743 754 5.068198 TCCTAACGAGGCTTACGTATTCAAT 59.932 40.000 1.42 0.00 43.40 2.57
951 962 2.354805 GGTAGATCTCACACCAACACCC 60.355 54.545 0.00 0.00 32.32 4.61
965 976 1.345063 ACACCCCTACACTACACACC 58.655 55.000 0.00 0.00 0.00 4.16
989 1000 2.119495 GCCCTTACTGATCCTTCTCCA 58.881 52.381 0.00 0.00 0.00 3.86
1221 1238 0.892755 AGTTACCGTCGCATCCAGAA 59.107 50.000 0.00 0.00 0.00 3.02
1222 1239 1.480954 AGTTACCGTCGCATCCAGAAT 59.519 47.619 0.00 0.00 0.00 2.40
1223 1240 2.093658 AGTTACCGTCGCATCCAGAATT 60.094 45.455 0.00 0.00 0.00 2.17
1224 1241 2.218953 TACCGTCGCATCCAGAATTC 57.781 50.000 0.00 0.00 0.00 2.17
1225 1242 0.462047 ACCGTCGCATCCAGAATTCC 60.462 55.000 0.65 0.00 0.00 3.01
1226 1243 0.461870 CCGTCGCATCCAGAATTCCA 60.462 55.000 0.65 0.00 0.00 3.53
1227 1244 0.933097 CGTCGCATCCAGAATTCCAG 59.067 55.000 0.65 0.00 0.00 3.86
1228 1245 1.471501 CGTCGCATCCAGAATTCCAGA 60.472 52.381 0.65 0.00 0.00 3.86
1229 1246 2.804572 CGTCGCATCCAGAATTCCAGAT 60.805 50.000 0.65 1.85 0.00 2.90
1230 1247 2.805099 GTCGCATCCAGAATTCCAGATC 59.195 50.000 0.65 0.00 0.00 2.75
1231 1248 2.149578 CGCATCCAGAATTCCAGATCC 58.850 52.381 0.65 0.00 0.00 3.36
1232 1249 2.486013 CGCATCCAGAATTCCAGATCCA 60.486 50.000 0.65 0.00 0.00 3.41
1233 1250 3.559069 GCATCCAGAATTCCAGATCCAA 58.441 45.455 0.65 0.00 0.00 3.53
1234 1251 4.150359 GCATCCAGAATTCCAGATCCAAT 58.850 43.478 0.65 0.00 0.00 3.16
1235 1252 4.217983 GCATCCAGAATTCCAGATCCAATC 59.782 45.833 0.65 0.00 0.00 2.67
1236 1253 4.443978 TCCAGAATTCCAGATCCAATCC 57.556 45.455 0.65 0.00 0.00 3.01
1237 1254 3.139025 TCCAGAATTCCAGATCCAATCCC 59.861 47.826 0.65 0.00 0.00 3.85
1238 1255 3.117398 CCAGAATTCCAGATCCAATCCCA 60.117 47.826 0.65 0.00 0.00 4.37
1239 1256 4.448787 CCAGAATTCCAGATCCAATCCCAT 60.449 45.833 0.65 0.00 0.00 4.00
1240 1257 4.523173 CAGAATTCCAGATCCAATCCCATG 59.477 45.833 0.65 0.00 0.00 3.66
1289 1306 3.505680 AGCGTGCATTCTTGGTTGATTAA 59.494 39.130 0.00 0.00 0.00 1.40
1296 1313 7.816995 GTGCATTCTTGGTTGATTAATTTGGTA 59.183 33.333 0.00 0.00 0.00 3.25
1298 1315 7.816995 GCATTCTTGGTTGATTAATTTGGTACA 59.183 33.333 0.00 0.00 0.00 2.90
1309 1339 6.774354 TTAATTTGGTACACGACTCACTTC 57.226 37.500 0.00 0.00 39.29 3.01
1540 1570 3.696426 GATGATCGCCAGCGTCGC 61.696 66.667 9.80 9.80 40.74 5.19
1636 1669 4.421515 CAGCCCCAGTCCCAGCAG 62.422 72.222 0.00 0.00 0.00 4.24
1692 1725 2.124695 GTTCTGGCGGATCCACCC 60.125 66.667 16.39 13.37 40.72 4.61
1766 1799 2.456119 GGCGCTCTCCATTGTCACG 61.456 63.158 7.64 0.00 0.00 4.35
1817 1850 2.264813 GCGTTGGCGTGATCTTACTTA 58.735 47.619 0.00 0.00 40.81 2.24
1828 1871 6.692249 GCGTGATCTTACTTAGAAGAGGTTAC 59.308 42.308 0.00 0.00 38.80 2.50
1838 1881 6.602803 ACTTAGAAGAGGTTACTGTAGGCTAC 59.397 42.308 17.76 17.76 0.00 3.58
1878 1921 4.989168 GTCATCGGTGTAGGGATTAATGTC 59.011 45.833 0.00 0.00 0.00 3.06
1917 1960 3.244112 GGTAATGGTAGGGAGGAACATCG 60.244 52.174 0.00 0.00 0.00 3.84
1945 2022 6.928348 TGGAGTCTTAGGTGAATTACTCAA 57.072 37.500 0.00 0.00 35.22 3.02
1946 2023 6.698380 TGGAGTCTTAGGTGAATTACTCAAC 58.302 40.000 0.00 0.00 42.69 3.18
2025 2108 2.254546 ACTTCGCCTTGTGATGTTCA 57.745 45.000 0.00 0.00 28.45 3.18
2035 2118 4.142687 CCTTGTGATGTTCATTTACCGTCC 60.143 45.833 0.00 0.00 0.00 4.79
2037 2120 3.008594 TGTGATGTTCATTTACCGTCCCT 59.991 43.478 0.00 0.00 0.00 4.20
2040 2123 2.773487 TGTTCATTTACCGTCCCTGTG 58.227 47.619 0.00 0.00 0.00 3.66
2071 2154 0.461548 CAGCAGCAATCGGTAGGAGA 59.538 55.000 0.00 0.00 0.00 3.71
2131 2218 2.084546 GAGCTAGTCGCCCACAAATTT 58.915 47.619 0.00 0.00 40.39 1.82
2184 2272 7.933577 CAGAGTATTCCAGCATTTCCACTATTA 59.066 37.037 0.00 0.00 0.00 0.98
2188 2276 4.065088 TCCAGCATTTCCACTATTATCGC 58.935 43.478 0.00 0.00 0.00 4.58
2278 2366 4.021229 TCCATGTGTAGACTTACCGACAT 58.979 43.478 0.00 0.00 30.64 3.06
2282 2370 4.801891 TGTGTAGACTTACCGACATGAAC 58.198 43.478 0.00 0.00 0.00 3.18
2283 2371 4.171754 GTGTAGACTTACCGACATGAACC 58.828 47.826 0.00 0.00 0.00 3.62
2284 2372 4.082354 GTGTAGACTTACCGACATGAACCT 60.082 45.833 0.00 0.00 0.00 3.50
2285 2373 3.594603 AGACTTACCGACATGAACCTG 57.405 47.619 0.00 0.00 0.00 4.00
2286 2374 2.897969 AGACTTACCGACATGAACCTGT 59.102 45.455 0.00 0.00 0.00 4.00
2287 2375 3.323979 AGACTTACCGACATGAACCTGTT 59.676 43.478 0.00 0.00 0.00 3.16
2288 2376 3.660865 ACTTACCGACATGAACCTGTTC 58.339 45.455 0.00 3.07 39.91 3.18
2302 2390 6.946340 TGAACCTGTTCATTCAGAAGCTATA 58.054 36.000 8.58 0.00 43.90 1.31
2306 2394 5.819379 CCTGTTCATTCAGAAGCTATAGCAA 59.181 40.000 26.07 11.79 39.45 3.91
2334 2422 0.174845 TGCCTCCCGAAACGACATAG 59.825 55.000 0.00 0.00 0.00 2.23
2335 2423 0.529992 GCCTCCCGAAACGACATAGG 60.530 60.000 0.00 0.00 0.00 2.57
2338 2426 2.428171 CCTCCCGAAACGACATAGGTAA 59.572 50.000 0.00 0.00 0.00 2.85
2339 2427 3.442100 CTCCCGAAACGACATAGGTAAC 58.558 50.000 0.00 0.00 0.00 2.50
2366 2454 4.877378 AGAACCAACATACCAACGTAGA 57.123 40.909 0.00 0.00 0.00 2.59
2407 2529 2.795329 ACTTTTGGCCGAATGACTCAT 58.205 42.857 22.31 0.00 0.00 2.90
2448 2571 5.127491 CGAAGGAAGATAGACTACTCACCT 58.873 45.833 0.00 0.00 0.00 4.00
2471 2594 3.992943 TTTTAGGAGCCCATTCGAAGA 57.007 42.857 3.35 0.00 0.00 2.87
2472 2595 3.992943 TTTAGGAGCCCATTCGAAGAA 57.007 42.857 3.35 0.00 45.90 2.52
2473 2596 3.992943 TTAGGAGCCCATTCGAAGAAA 57.007 42.857 3.35 0.00 45.90 2.52
2474 2597 2.879103 AGGAGCCCATTCGAAGAAAA 57.121 45.000 3.35 0.00 45.90 2.29
2475 2598 3.154827 AGGAGCCCATTCGAAGAAAAA 57.845 42.857 3.35 0.00 45.90 1.94
2502 2625 2.725641 TGCTACACACACGACGCT 59.274 55.556 0.00 0.00 0.00 5.07
2503 2626 1.066752 TGCTACACACACGACGCTT 59.933 52.632 0.00 0.00 0.00 4.68
2504 2627 1.212455 TGCTACACACACGACGCTTG 61.212 55.000 0.00 0.00 0.00 4.01
2505 2628 1.487231 CTACACACACGACGCTTGC 59.513 57.895 0.00 0.00 0.00 4.01
2506 2629 1.212455 CTACACACACGACGCTTGCA 61.212 55.000 0.00 0.00 0.00 4.08
2507 2630 1.212455 TACACACACGACGCTTGCAG 61.212 55.000 0.00 0.00 0.00 4.41
2508 2631 3.640000 ACACACGACGCTTGCAGC 61.640 61.111 0.00 0.00 38.02 5.25
2509 2632 4.374702 CACACGACGCTTGCAGCC 62.375 66.667 0.00 0.00 38.18 4.85
2512 2635 4.961511 ACGACGCTTGCAGCCGAA 62.962 61.111 13.89 0.00 38.18 4.30
2513 2636 3.711842 CGACGCTTGCAGCCGAAA 61.712 61.111 13.89 0.00 38.18 3.46
2514 2637 2.870372 GACGCTTGCAGCCGAAAT 59.130 55.556 13.89 0.00 38.18 2.17
2515 2638 1.512734 GACGCTTGCAGCCGAAATG 60.513 57.895 13.89 0.00 38.18 2.32
2516 2639 2.187599 GACGCTTGCAGCCGAAATGT 62.188 55.000 13.89 0.65 38.18 2.71
2517 2640 1.798725 CGCTTGCAGCCGAAATGTG 60.799 57.895 2.31 0.00 38.18 3.21
2518 2641 1.444895 GCTTGCAGCCGAAATGTGG 60.445 57.895 0.00 0.00 34.48 4.17
2519 2642 1.865788 GCTTGCAGCCGAAATGTGGA 61.866 55.000 0.00 0.00 34.48 4.02
2520 2643 0.109597 CTTGCAGCCGAAATGTGGAC 60.110 55.000 0.00 0.00 0.00 4.02
2521 2644 1.851021 TTGCAGCCGAAATGTGGACG 61.851 55.000 0.00 0.00 0.00 4.79
2522 2645 2.032634 GCAGCCGAAATGTGGACGA 61.033 57.895 0.00 0.00 0.00 4.20
2523 2646 1.787847 CAGCCGAAATGTGGACGAC 59.212 57.895 0.00 0.00 0.00 4.34
2524 2647 0.948623 CAGCCGAAATGTGGACGACA 60.949 55.000 0.00 0.00 39.53 4.35
2534 2657 2.717580 GTGGACGACACTACATCACA 57.282 50.000 7.56 0.00 46.72 3.58
2535 2658 2.596452 GTGGACGACACTACATCACAG 58.404 52.381 7.56 0.00 46.72 3.66
2536 2659 2.228103 GTGGACGACACTACATCACAGA 59.772 50.000 7.56 0.00 46.72 3.41
2537 2660 2.228103 TGGACGACACTACATCACAGAC 59.772 50.000 0.00 0.00 0.00 3.51
2538 2661 2.415625 GGACGACACTACATCACAGACC 60.416 54.545 0.00 0.00 0.00 3.85
2539 2662 2.228103 GACGACACTACATCACAGACCA 59.772 50.000 0.00 0.00 0.00 4.02
2540 2663 2.826128 ACGACACTACATCACAGACCAT 59.174 45.455 0.00 0.00 0.00 3.55
2541 2664 3.119459 ACGACACTACATCACAGACCATC 60.119 47.826 0.00 0.00 0.00 3.51
2542 2665 3.735208 CGACACTACATCACAGACCATCC 60.735 52.174 0.00 0.00 0.00 3.51
2543 2666 3.173151 ACACTACATCACAGACCATCCA 58.827 45.455 0.00 0.00 0.00 3.41
2544 2667 3.055819 ACACTACATCACAGACCATCCAC 60.056 47.826 0.00 0.00 0.00 4.02
2545 2668 3.196469 CACTACATCACAGACCATCCACT 59.804 47.826 0.00 0.00 0.00 4.00
2546 2669 2.775911 ACATCACAGACCATCCACTG 57.224 50.000 0.00 0.00 39.65 3.66
2555 2678 2.864114 CCATCCACTGGCAAGTCTG 58.136 57.895 0.00 0.00 38.47 3.51
2556 2679 0.325933 CCATCCACTGGCAAGTCTGA 59.674 55.000 0.00 0.00 38.47 3.27
2557 2680 1.678123 CCATCCACTGGCAAGTCTGAG 60.678 57.143 0.00 0.00 38.47 3.35
2558 2681 0.035630 ATCCACTGGCAAGTCTGAGC 60.036 55.000 0.00 0.00 32.98 4.26
2559 2682 1.071987 CCACTGGCAAGTCTGAGCA 59.928 57.895 0.00 0.00 32.98 4.26
2560 2683 0.954449 CCACTGGCAAGTCTGAGCAG 60.954 60.000 0.00 0.00 32.98 4.24
2561 2684 1.302351 ACTGGCAAGTCTGAGCAGC 60.302 57.895 0.00 0.00 26.77 5.25
2562 2685 2.033141 TGGCAAGTCTGAGCAGCC 59.967 61.111 7.11 7.11 45.41 4.85
2563 2686 3.123620 GGCAAGTCTGAGCAGCCG 61.124 66.667 0.00 0.00 35.42 5.52
2564 2687 2.358003 GCAAGTCTGAGCAGCCGT 60.358 61.111 0.00 0.00 0.00 5.68
2565 2688 1.079819 GCAAGTCTGAGCAGCCGTA 60.080 57.895 0.00 0.00 0.00 4.02
2566 2689 0.670546 GCAAGTCTGAGCAGCCGTAA 60.671 55.000 0.00 0.00 0.00 3.18
2567 2690 1.354040 CAAGTCTGAGCAGCCGTAAG 58.646 55.000 0.00 0.00 0.00 2.34
2568 2691 0.390472 AAGTCTGAGCAGCCGTAAGC 60.390 55.000 0.00 0.00 44.25 3.09
2577 2700 3.014856 GCCGTAAGCGCTTGGATC 58.985 61.111 32.23 17.39 36.67 3.36
2578 2701 1.813753 GCCGTAAGCGCTTGGATCA 60.814 57.895 32.23 9.42 36.67 2.92
2579 2702 1.766143 GCCGTAAGCGCTTGGATCAG 61.766 60.000 32.23 15.07 36.67 2.90
2580 2703 1.638467 CGTAAGCGCTTGGATCAGC 59.362 57.895 32.23 11.75 36.33 4.26
2581 2704 0.807667 CGTAAGCGCTTGGATCAGCT 60.808 55.000 32.23 5.18 42.35 4.24
2582 2705 1.536072 CGTAAGCGCTTGGATCAGCTA 60.536 52.381 32.23 6.10 39.25 3.32
2583 2706 2.760374 GTAAGCGCTTGGATCAGCTAT 58.240 47.619 32.23 3.76 39.25 2.97
2584 2707 1.876322 AAGCGCTTGGATCAGCTATC 58.124 50.000 24.40 0.00 39.25 2.08
2585 2708 0.319383 AGCGCTTGGATCAGCTATCG 60.319 55.000 2.64 0.00 38.29 2.92
2586 2709 0.598680 GCGCTTGGATCAGCTATCGT 60.599 55.000 0.00 0.00 37.68 3.73
2587 2710 1.135046 CGCTTGGATCAGCTATCGTG 58.865 55.000 3.79 0.00 37.68 4.35
2588 2711 0.864455 GCTTGGATCAGCTATCGTGC 59.136 55.000 0.00 0.00 36.79 5.34
2589 2712 1.807755 GCTTGGATCAGCTATCGTGCA 60.808 52.381 0.00 0.00 36.79 4.57
2590 2713 2.763933 CTTGGATCAGCTATCGTGCAT 58.236 47.619 0.00 0.00 35.21 3.96
2591 2714 2.159327 TGGATCAGCTATCGTGCATG 57.841 50.000 0.00 0.00 35.21 4.06
2592 2715 0.795085 GGATCAGCTATCGTGCATGC 59.205 55.000 11.82 11.82 35.21 4.06
2593 2716 1.505425 GATCAGCTATCGTGCATGCA 58.495 50.000 18.46 18.46 34.99 3.96
2594 2717 2.074576 GATCAGCTATCGTGCATGCAT 58.925 47.619 25.64 10.90 34.99 3.96
2595 2718 1.505425 TCAGCTATCGTGCATGCATC 58.495 50.000 25.64 16.09 34.99 3.91
2596 2719 0.163146 CAGCTATCGTGCATGCATCG 59.837 55.000 25.64 26.06 34.99 3.84
2597 2720 0.249615 AGCTATCGTGCATGCATCGT 60.250 50.000 28.81 21.78 34.99 3.73
2598 2721 0.583438 GCTATCGTGCATGCATCGTT 59.417 50.000 28.81 24.96 0.00 3.85
2599 2722 1.397693 GCTATCGTGCATGCATCGTTC 60.398 52.381 28.81 15.92 0.00 3.95
2600 2723 1.860326 CTATCGTGCATGCATCGTTCA 59.140 47.619 28.81 17.79 0.00 3.18
2601 2724 1.085893 ATCGTGCATGCATCGTTCAA 58.914 45.000 28.81 17.53 0.00 2.69
2602 2725 0.165727 TCGTGCATGCATCGTTCAAC 59.834 50.000 28.81 14.14 0.00 3.18
2603 2726 0.110283 CGTGCATGCATCGTTCAACA 60.110 50.000 25.64 0.00 0.00 3.33
2604 2727 1.330306 GTGCATGCATCGTTCAACAC 58.670 50.000 25.64 2.41 0.00 3.32
2605 2728 0.950116 TGCATGCATCGTTCAACACA 59.050 45.000 18.46 0.00 0.00 3.72
2606 2729 1.336125 TGCATGCATCGTTCAACACAA 59.664 42.857 18.46 0.00 0.00 3.33
2607 2730 2.223665 TGCATGCATCGTTCAACACAAA 60.224 40.909 18.46 0.00 0.00 2.83
2608 2731 2.793790 GCATGCATCGTTCAACACAAAA 59.206 40.909 14.21 0.00 0.00 2.44
2609 2732 3.429543 GCATGCATCGTTCAACACAAAAT 59.570 39.130 14.21 0.00 0.00 1.82
2610 2733 4.433283 GCATGCATCGTTCAACACAAAATC 60.433 41.667 14.21 0.00 0.00 2.17
2611 2734 3.295785 TGCATCGTTCAACACAAAATCG 58.704 40.909 0.00 0.00 0.00 3.34
2612 2735 3.242903 TGCATCGTTCAACACAAAATCGT 60.243 39.130 0.00 0.00 0.00 3.73
2613 2736 3.357823 GCATCGTTCAACACAAAATCGTC 59.642 43.478 0.00 0.00 0.00 4.20
2614 2737 3.595709 TCGTTCAACACAAAATCGTCC 57.404 42.857 0.00 0.00 0.00 4.79
2615 2738 2.937149 TCGTTCAACACAAAATCGTCCA 59.063 40.909 0.00 0.00 0.00 4.02
2616 2739 3.562141 TCGTTCAACACAAAATCGTCCAT 59.438 39.130 0.00 0.00 0.00 3.41
2617 2740 3.906008 CGTTCAACACAAAATCGTCCATC 59.094 43.478 0.00 0.00 0.00 3.51
2618 2741 4.553742 CGTTCAACACAAAATCGTCCATCA 60.554 41.667 0.00 0.00 0.00 3.07
2619 2742 5.277825 GTTCAACACAAAATCGTCCATCAA 58.722 37.500 0.00 0.00 0.00 2.57
2620 2743 5.107109 TCAACACAAAATCGTCCATCAAG 57.893 39.130 0.00 0.00 0.00 3.02
2621 2744 4.578516 TCAACACAAAATCGTCCATCAAGT 59.421 37.500 0.00 0.00 0.00 3.16
2622 2745 5.760743 TCAACACAAAATCGTCCATCAAGTA 59.239 36.000 0.00 0.00 0.00 2.24
2623 2746 5.862924 ACACAAAATCGTCCATCAAGTAG 57.137 39.130 0.00 0.00 0.00 2.57
2624 2747 5.305585 ACACAAAATCGTCCATCAAGTAGT 58.694 37.500 0.00 0.00 0.00 2.73
2625 2748 5.763204 ACACAAAATCGTCCATCAAGTAGTT 59.237 36.000 0.00 0.00 0.00 2.24
2626 2749 6.073222 ACACAAAATCGTCCATCAAGTAGTTC 60.073 38.462 0.00 0.00 0.00 3.01
2627 2750 5.411669 ACAAAATCGTCCATCAAGTAGTTCC 59.588 40.000 0.00 0.00 0.00 3.62
2628 2751 2.933495 TCGTCCATCAAGTAGTTCCG 57.067 50.000 0.00 0.00 0.00 4.30
2629 2752 1.475280 TCGTCCATCAAGTAGTTCCGG 59.525 52.381 0.00 0.00 0.00 5.14
2630 2753 1.475280 CGTCCATCAAGTAGTTCCGGA 59.525 52.381 0.00 0.00 0.00 5.14
2631 2754 2.094390 CGTCCATCAAGTAGTTCCGGAA 60.094 50.000 14.35 14.35 0.00 4.30
2632 2755 3.615592 CGTCCATCAAGTAGTTCCGGAAA 60.616 47.826 20.79 0.20 0.00 3.13
2633 2756 4.320870 GTCCATCAAGTAGTTCCGGAAAA 58.679 43.478 20.79 7.51 0.00 2.29
2664 2787 9.301153 ACATCAAAATTAAGTGTGTTTGACTTC 57.699 29.630 0.16 0.00 41.40 3.01
2665 2788 9.299963 CATCAAAATTAAGTGTGTTTGACTTCA 57.700 29.630 0.16 0.00 41.40 3.02
2668 2791 7.755582 AAATTAAGTGTGTTTGACTTCAAGC 57.244 32.000 0.00 0.00 37.15 4.01
2703 2826 1.616865 TGGTCGACCGAGAAGTTGATT 59.383 47.619 28.70 0.00 39.43 2.57
2704 2827 2.260481 GGTCGACCGAGAAGTTGATTC 58.740 52.381 20.85 0.00 38.28 2.52
2706 2829 1.203994 TCGACCGAGAAGTTGATTCCC 59.796 52.381 0.00 0.00 38.84 3.97
2710 2833 3.028850 ACCGAGAAGTTGATTCCCGATA 58.971 45.455 0.00 0.00 41.27 2.92
2711 2834 3.181478 ACCGAGAAGTTGATTCCCGATAC 60.181 47.826 0.00 0.00 41.27 2.24
2712 2835 3.043586 CGAGAAGTTGATTCCCGATACG 58.956 50.000 0.00 0.00 41.27 3.06
2713 2836 2.795470 GAGAAGTTGATTCCCGATACGC 59.205 50.000 0.00 0.00 38.84 4.42
2714 2837 2.167693 AGAAGTTGATTCCCGATACGCA 59.832 45.455 0.00 0.00 38.84 5.24
2732 2855 2.417719 GCACGAGTGAGGATGAAAGTT 58.582 47.619 7.50 0.00 0.00 2.66
2733 2856 2.808543 GCACGAGTGAGGATGAAAGTTT 59.191 45.455 7.50 0.00 0.00 2.66
2737 2860 3.120408 CGAGTGAGGATGAAAGTTTGCAG 60.120 47.826 0.00 0.00 0.00 4.41
2747 2870 6.074142 GGATGAAAGTTTGCAGCAAAAACTAG 60.074 38.462 22.26 0.00 44.93 2.57
2753 2876 4.710423 TTGCAGCAAAAACTAGTGTTGA 57.290 36.364 19.02 0.85 36.39 3.18
2754 2877 4.027572 TGCAGCAAAAACTAGTGTTGAC 57.972 40.909 19.02 12.05 36.39 3.18
2755 2878 3.181491 TGCAGCAAAAACTAGTGTTGACC 60.181 43.478 19.02 9.28 36.39 4.02
2762 2885 6.128254 GCAAAAACTAGTGTTGACCTAGATCC 60.128 42.308 19.02 0.30 36.29 3.36
2767 2890 3.100671 AGTGTTGACCTAGATCCCAGAC 58.899 50.000 0.00 0.00 0.00 3.51
2772 2895 0.824759 ACCTAGATCCCAGACGCAAC 59.175 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.744660 AGGGGATTATGCGATTCTTGAC 58.255 45.455 0.00 0.00 0.00 3.18
509 516 2.670148 GGGAGACGGCAACCATCCT 61.670 63.158 6.83 0.00 0.00 3.24
513 520 4.308458 CGTGGGAGACGGCAACCA 62.308 66.667 0.00 0.00 44.85 3.67
718 729 4.398988 TGAATACGTAAGCCTCGTTAGGAA 59.601 41.667 0.00 0.00 45.56 3.36
764 775 0.946221 CATGGCGATAGGAGGCGTTC 60.946 60.000 0.00 0.00 36.92 3.95
810 821 2.281484 GCTGCACAACGGGAGGAA 60.281 61.111 0.00 0.00 0.00 3.36
951 962 1.337823 GGCACTGGTGTGTAGTGTAGG 60.338 57.143 6.95 0.00 45.60 3.18
965 976 2.503356 AGAAGGATCAGTAAGGGCACTG 59.497 50.000 0.00 0.00 46.04 3.66
1182 1196 2.283388 TTACCCAGGACGTCGCCT 60.283 61.111 9.92 0.00 39.37 5.52
1221 1238 2.178325 TGCATGGGATTGGATCTGGAAT 59.822 45.455 0.00 0.00 0.00 3.01
1222 1239 1.570024 TGCATGGGATTGGATCTGGAA 59.430 47.619 0.00 0.00 0.00 3.53
1223 1240 1.224436 TGCATGGGATTGGATCTGGA 58.776 50.000 0.00 0.00 0.00 3.86
1224 1241 2.304221 ATGCATGGGATTGGATCTGG 57.696 50.000 0.00 0.00 0.00 3.86
1225 1242 2.753452 GCTATGCATGGGATTGGATCTG 59.247 50.000 10.16 0.00 0.00 2.90
1226 1243 2.617276 CGCTATGCATGGGATTGGATCT 60.617 50.000 10.16 0.00 0.00 2.75
1227 1244 1.741706 CGCTATGCATGGGATTGGATC 59.258 52.381 10.16 0.00 0.00 3.36
1228 1245 1.830279 CGCTATGCATGGGATTGGAT 58.170 50.000 10.16 0.00 0.00 3.41
1229 1246 0.890542 GCGCTATGCATGGGATTGGA 60.891 55.000 10.16 0.00 45.45 3.53
1230 1247 1.582968 GCGCTATGCATGGGATTGG 59.417 57.895 10.16 0.00 45.45 3.16
1240 1257 4.201570 CGATAATCAAGAAGAGCGCTATGC 60.202 45.833 11.50 5.62 46.98 3.14
1270 1287 6.650390 ACCAAATTAATCAACCAAGAATGCAC 59.350 34.615 0.00 0.00 0.00 4.57
1272 1289 7.816995 TGTACCAAATTAATCAACCAAGAATGC 59.183 33.333 0.00 0.00 0.00 3.56
1289 1306 3.314553 CGAAGTGAGTCGTGTACCAAAT 58.685 45.455 0.00 0.00 36.26 2.32
1298 1315 0.030369 AAGAACGCGAAGTGAGTCGT 59.970 50.000 15.93 0.00 43.07 4.34
1309 1339 0.587242 CGCCATGAATCAAGAACGCG 60.587 55.000 3.53 3.53 0.00 6.01
1630 1663 4.463879 CAGAGACCGCCCTGCTGG 62.464 72.222 1.89 1.89 37.09 4.85
1759 1792 2.280524 CGACAAGCCCCGTGACAA 60.281 61.111 0.00 0.00 0.00 3.18
1817 1850 4.279982 GGTAGCCTACAGTAACCTCTTCT 58.720 47.826 3.95 0.00 0.00 2.85
1828 1871 2.225963 CCTAACGATCGGTAGCCTACAG 59.774 54.545 30.55 14.71 34.26 2.74
1838 1881 1.471287 TGACACAGACCTAACGATCGG 59.529 52.381 20.98 3.61 0.00 4.18
1878 1921 8.415950 ACCATTACCTATAGATCTCAAGACTG 57.584 38.462 0.00 0.00 0.00 3.51
1917 1960 7.793036 AGTAATTCACCTAAGACTCCATAACC 58.207 38.462 0.00 0.00 0.00 2.85
2007 2084 3.837213 AATGAACATCACAAGGCGAAG 57.163 42.857 0.00 0.00 0.00 3.79
2025 2108 1.982958 AGGAACACAGGGACGGTAAAT 59.017 47.619 0.00 0.00 33.08 1.40
2035 2118 2.001812 CTGATCGACAGGAACACAGG 57.998 55.000 7.01 0.00 42.39 4.00
2037 2120 0.678950 TGCTGATCGACAGGAACACA 59.321 50.000 14.19 3.78 43.61 3.72
2040 2123 0.390340 TGCTGCTGATCGACAGGAAC 60.390 55.000 14.57 9.08 45.67 3.62
2071 2154 2.095059 GCAAAATGCACCGTGAGAAGAT 60.095 45.455 1.65 0.00 44.26 2.40
2131 2218 0.465460 GGAAGCAGTCAACCACACCA 60.465 55.000 0.00 0.00 0.00 4.17
2184 2272 0.882042 GGTGGCTGAATCATCGCGAT 60.882 55.000 17.62 17.62 35.12 4.58
2188 2276 2.251409 AGATGGTGGCTGAATCATCG 57.749 50.000 0.00 0.00 40.43 3.84
2255 2343 3.442625 TGTCGGTAAGTCTACACATGGAG 59.557 47.826 0.00 0.00 0.00 3.86
2278 2366 8.326310 GCTATAGCTTCTGAATGAACAGGTTCA 61.326 40.741 17.75 16.37 44.55 3.18
2282 2370 5.363101 TGCTATAGCTTCTGAATGAACAGG 58.637 41.667 24.61 0.00 42.66 4.00
2283 2371 6.915544 TTGCTATAGCTTCTGAATGAACAG 57.084 37.500 24.61 0.00 42.66 3.16
2284 2372 6.317140 CCTTTGCTATAGCTTCTGAATGAACA 59.683 38.462 24.61 0.00 42.66 3.18
2285 2373 6.723282 CCTTTGCTATAGCTTCTGAATGAAC 58.277 40.000 24.61 0.00 42.66 3.18
2286 2374 5.297776 GCCTTTGCTATAGCTTCTGAATGAA 59.702 40.000 24.61 5.35 42.66 2.57
2287 2375 4.818546 GCCTTTGCTATAGCTTCTGAATGA 59.181 41.667 24.61 0.00 42.66 2.57
2288 2376 4.023365 GGCCTTTGCTATAGCTTCTGAATG 60.023 45.833 24.61 12.07 42.66 2.67
2289 2377 4.140536 GGCCTTTGCTATAGCTTCTGAAT 58.859 43.478 24.61 0.00 42.66 2.57
2334 2422 7.614494 TGGTATGTTGGTTCTTACTAGTTACC 58.386 38.462 0.00 2.87 0.00 2.85
2335 2423 8.929746 GTTGGTATGTTGGTTCTTACTAGTTAC 58.070 37.037 0.00 0.00 0.00 2.50
2338 2426 6.161381 CGTTGGTATGTTGGTTCTTACTAGT 58.839 40.000 0.00 0.00 0.00 2.57
2339 2427 6.161381 ACGTTGGTATGTTGGTTCTTACTAG 58.839 40.000 0.00 0.00 0.00 2.57
2340 2428 6.100404 ACGTTGGTATGTTGGTTCTTACTA 57.900 37.500 0.00 0.00 0.00 1.82
2341 2429 4.964593 ACGTTGGTATGTTGGTTCTTACT 58.035 39.130 0.00 0.00 0.00 2.24
2342 2430 6.158598 TCTACGTTGGTATGTTGGTTCTTAC 58.841 40.000 0.00 0.00 0.00 2.34
2343 2431 6.343716 TCTACGTTGGTATGTTGGTTCTTA 57.656 37.500 0.00 0.00 0.00 2.10
2344 2432 5.217978 TCTACGTTGGTATGTTGGTTCTT 57.782 39.130 0.00 0.00 0.00 2.52
2345 2433 4.817517 CTCTACGTTGGTATGTTGGTTCT 58.182 43.478 0.00 0.00 0.00 3.01
2366 2454 3.799432 TTGGTAACTGGTATGTTGGCT 57.201 42.857 0.00 0.00 37.61 4.75
2407 2529 0.319555 CGTGCCGAGGAAGAAGACAA 60.320 55.000 0.00 0.00 0.00 3.18
2474 2597 3.971032 GTGTGTAGCACTGCTCTTTTT 57.029 42.857 6.86 0.00 44.41 1.94
2485 2608 1.066752 AAGCGTCGTGTGTGTAGCA 59.933 52.632 0.00 0.00 0.00 3.49
2486 2609 1.487231 CAAGCGTCGTGTGTGTAGC 59.513 57.895 0.00 0.00 0.00 3.58
2487 2610 1.212455 TGCAAGCGTCGTGTGTGTAG 61.212 55.000 0.00 0.00 0.00 2.74
2488 2611 1.212455 CTGCAAGCGTCGTGTGTGTA 61.212 55.000 0.00 0.00 0.00 2.90
2489 2612 2.510464 TGCAAGCGTCGTGTGTGT 60.510 55.556 0.00 0.00 0.00 3.72
2490 2613 2.246397 CTGCAAGCGTCGTGTGTG 59.754 61.111 0.00 0.00 0.00 3.82
2501 2624 0.109597 GTCCACATTTCGGCTGCAAG 60.110 55.000 0.50 0.00 0.00 4.01
2502 2625 1.851021 CGTCCACATTTCGGCTGCAA 61.851 55.000 0.50 0.00 0.00 4.08
2503 2626 2.324330 CGTCCACATTTCGGCTGCA 61.324 57.895 0.50 0.00 0.00 4.41
2504 2627 2.032634 TCGTCCACATTTCGGCTGC 61.033 57.895 0.00 0.00 0.00 5.25
2505 2628 0.948623 TGTCGTCCACATTTCGGCTG 60.949 55.000 0.00 0.00 0.00 4.85
2506 2629 0.949105 GTGTCGTCCACATTTCGGCT 60.949 55.000 3.63 0.00 43.92 5.52
2507 2630 1.495951 GTGTCGTCCACATTTCGGC 59.504 57.895 3.63 0.00 43.92 5.54
2515 2638 2.228103 TCTGTGATGTAGTGTCGTCCAC 59.772 50.000 0.60 0.60 44.89 4.02
2516 2639 2.228103 GTCTGTGATGTAGTGTCGTCCA 59.772 50.000 0.00 0.00 0.00 4.02
2517 2640 2.415625 GGTCTGTGATGTAGTGTCGTCC 60.416 54.545 0.00 0.00 0.00 4.79
2518 2641 2.228103 TGGTCTGTGATGTAGTGTCGTC 59.772 50.000 0.00 0.00 0.00 4.20
2519 2642 2.235891 TGGTCTGTGATGTAGTGTCGT 58.764 47.619 0.00 0.00 0.00 4.34
2520 2643 3.439293 GATGGTCTGTGATGTAGTGTCG 58.561 50.000 0.00 0.00 0.00 4.35
2521 2644 3.195610 TGGATGGTCTGTGATGTAGTGTC 59.804 47.826 0.00 0.00 0.00 3.67
2522 2645 3.055819 GTGGATGGTCTGTGATGTAGTGT 60.056 47.826 0.00 0.00 0.00 3.55
2523 2646 3.196469 AGTGGATGGTCTGTGATGTAGTG 59.804 47.826 0.00 0.00 0.00 2.74
2524 2647 3.196469 CAGTGGATGGTCTGTGATGTAGT 59.804 47.826 0.00 0.00 0.00 2.73
2525 2648 3.431346 CCAGTGGATGGTCTGTGATGTAG 60.431 52.174 1.68 0.00 44.91 2.74
2526 2649 2.501316 CCAGTGGATGGTCTGTGATGTA 59.499 50.000 1.68 0.00 44.91 2.29
2527 2650 1.280133 CCAGTGGATGGTCTGTGATGT 59.720 52.381 1.68 0.00 44.91 3.06
2528 2651 2.034104 CCAGTGGATGGTCTGTGATG 57.966 55.000 1.68 0.00 44.91 3.07
2538 2661 1.735386 CTCAGACTTGCCAGTGGATG 58.265 55.000 15.20 4.05 31.22 3.51
2539 2662 0.035630 GCTCAGACTTGCCAGTGGAT 60.036 55.000 15.20 0.00 31.22 3.41
2540 2663 1.372683 GCTCAGACTTGCCAGTGGA 59.627 57.895 15.20 0.00 31.22 4.02
2541 2664 0.954449 CTGCTCAGACTTGCCAGTGG 60.954 60.000 4.20 4.20 31.22 4.00
2542 2665 1.575576 GCTGCTCAGACTTGCCAGTG 61.576 60.000 0.00 0.00 31.22 3.66
2543 2666 1.302351 GCTGCTCAGACTTGCCAGT 60.302 57.895 0.29 0.00 35.17 4.00
2544 2667 2.039405 GGCTGCTCAGACTTGCCAG 61.039 63.158 0.00 0.00 42.79 4.85
2545 2668 2.033141 GGCTGCTCAGACTTGCCA 59.967 61.111 0.00 0.00 42.79 4.92
2546 2669 2.507110 TACGGCTGCTCAGACTTGCC 62.507 60.000 0.00 0.00 40.14 4.52
2547 2670 0.670546 TTACGGCTGCTCAGACTTGC 60.671 55.000 0.00 0.00 33.16 4.01
2548 2671 1.354040 CTTACGGCTGCTCAGACTTG 58.646 55.000 0.00 0.00 33.16 3.16
2549 2672 0.390472 GCTTACGGCTGCTCAGACTT 60.390 55.000 0.00 0.00 38.06 3.01
2550 2673 1.216710 GCTTACGGCTGCTCAGACT 59.783 57.895 0.00 0.00 38.06 3.24
2551 2674 2.161486 CGCTTACGGCTGCTCAGAC 61.161 63.158 0.00 0.00 39.13 3.51
2552 2675 2.181777 CGCTTACGGCTGCTCAGA 59.818 61.111 0.00 0.00 39.13 3.27
2553 2676 3.558411 GCGCTTACGGCTGCTCAG 61.558 66.667 0.00 0.00 40.57 3.35
2554 2677 3.589654 AAGCGCTTACGGCTGCTCA 62.590 57.895 23.72 0.00 44.88 4.26
2555 2678 2.815647 AAGCGCTTACGGCTGCTC 60.816 61.111 23.72 0.00 44.88 4.26
2556 2679 3.121030 CAAGCGCTTACGGCTGCT 61.121 61.111 24.55 0.00 46.48 4.24
2557 2680 4.166011 CCAAGCGCTTACGGCTGC 62.166 66.667 24.55 0.00 41.39 5.25
2558 2681 1.766143 GATCCAAGCGCTTACGGCTG 61.766 60.000 24.55 10.20 41.39 4.85
2559 2682 1.521681 GATCCAAGCGCTTACGGCT 60.522 57.895 24.55 12.67 44.02 5.52
2560 2683 1.766143 CTGATCCAAGCGCTTACGGC 61.766 60.000 24.55 13.28 40.57 5.68
2561 2684 1.766143 GCTGATCCAAGCGCTTACGG 61.766 60.000 24.55 20.87 40.57 4.02
2562 2685 1.638467 GCTGATCCAAGCGCTTACG 59.362 57.895 24.55 15.97 44.07 3.18
2569 2692 0.864455 GCACGATAGCTGATCCAAGC 59.136 55.000 0.00 0.00 43.88 4.01
2570 2693 2.229675 TGCACGATAGCTGATCCAAG 57.770 50.000 0.00 0.00 42.67 3.61
2571 2694 2.486918 CATGCACGATAGCTGATCCAA 58.513 47.619 0.00 0.00 42.67 3.53
2572 2695 1.875157 GCATGCACGATAGCTGATCCA 60.875 52.381 14.21 0.00 42.67 3.41
2573 2696 0.795085 GCATGCACGATAGCTGATCC 59.205 55.000 14.21 0.00 42.67 3.36
2574 2697 1.505425 TGCATGCACGATAGCTGATC 58.495 50.000 18.46 0.00 42.67 2.92
2575 2698 2.074576 GATGCATGCACGATAGCTGAT 58.925 47.619 25.37 1.94 42.67 2.90
2576 2699 1.505425 GATGCATGCACGATAGCTGA 58.495 50.000 25.37 0.00 42.67 4.26
2577 2700 0.163146 CGATGCATGCACGATAGCTG 59.837 55.000 25.37 2.76 42.67 4.24
2578 2701 0.249615 ACGATGCATGCACGATAGCT 60.250 50.000 33.63 16.50 42.67 3.32
2579 2702 0.583438 AACGATGCATGCACGATAGC 59.417 50.000 33.63 13.41 42.67 2.97
2580 2703 1.860326 TGAACGATGCATGCACGATAG 59.140 47.619 33.63 21.82 46.19 2.08
2581 2704 1.933247 TGAACGATGCATGCACGATA 58.067 45.000 33.63 21.71 0.00 2.92
2582 2705 1.085893 TTGAACGATGCATGCACGAT 58.914 45.000 33.63 26.88 0.00 3.73
2583 2706 0.165727 GTTGAACGATGCATGCACGA 59.834 50.000 33.63 17.21 0.00 4.35
2584 2707 0.110283 TGTTGAACGATGCATGCACG 60.110 50.000 28.73 28.73 0.00 5.34
2585 2708 1.330306 GTGTTGAACGATGCATGCAC 58.670 50.000 25.37 15.77 0.00 4.57
2586 2709 0.950116 TGTGTTGAACGATGCATGCA 59.050 45.000 25.04 25.04 0.00 3.96
2587 2710 2.049077 TTGTGTTGAACGATGCATGC 57.951 45.000 11.82 11.82 0.00 4.06
2588 2711 4.201419 CGATTTTGTGTTGAACGATGCATG 60.201 41.667 2.46 0.00 0.00 4.06
2589 2712 3.913763 CGATTTTGTGTTGAACGATGCAT 59.086 39.130 0.00 0.00 0.00 3.96
2590 2713 3.242903 ACGATTTTGTGTTGAACGATGCA 60.243 39.130 0.00 0.00 0.00 3.96
2591 2714 3.296628 ACGATTTTGTGTTGAACGATGC 58.703 40.909 0.00 0.00 0.00 3.91
2592 2715 3.906008 GGACGATTTTGTGTTGAACGATG 59.094 43.478 0.00 0.00 0.00 3.84
2593 2716 3.562141 TGGACGATTTTGTGTTGAACGAT 59.438 39.130 0.00 0.00 0.00 3.73
2594 2717 2.937149 TGGACGATTTTGTGTTGAACGA 59.063 40.909 0.00 0.00 0.00 3.85
2595 2718 3.326733 TGGACGATTTTGTGTTGAACG 57.673 42.857 0.00 0.00 0.00 3.95
2596 2719 4.854399 TGATGGACGATTTTGTGTTGAAC 58.146 39.130 0.00 0.00 0.00 3.18
2597 2720 5.067153 ACTTGATGGACGATTTTGTGTTGAA 59.933 36.000 0.00 0.00 0.00 2.69
2598 2721 4.578516 ACTTGATGGACGATTTTGTGTTGA 59.421 37.500 0.00 0.00 0.00 3.18
2599 2722 4.858935 ACTTGATGGACGATTTTGTGTTG 58.141 39.130 0.00 0.00 0.00 3.33
2600 2723 5.763204 ACTACTTGATGGACGATTTTGTGTT 59.237 36.000 0.00 0.00 0.00 3.32
2601 2724 5.305585 ACTACTTGATGGACGATTTTGTGT 58.694 37.500 0.00 0.00 0.00 3.72
2602 2725 5.862924 ACTACTTGATGGACGATTTTGTG 57.137 39.130 0.00 0.00 0.00 3.33
2603 2726 5.411669 GGAACTACTTGATGGACGATTTTGT 59.588 40.000 0.00 0.00 0.00 2.83
2604 2727 5.445939 CGGAACTACTTGATGGACGATTTTG 60.446 44.000 0.00 0.00 0.00 2.44
2605 2728 4.630069 CGGAACTACTTGATGGACGATTTT 59.370 41.667 0.00 0.00 0.00 1.82
2606 2729 4.181578 CGGAACTACTTGATGGACGATTT 58.818 43.478 0.00 0.00 0.00 2.17
2607 2730 3.430374 CCGGAACTACTTGATGGACGATT 60.430 47.826 0.00 0.00 0.00 3.34
2608 2731 2.100916 CCGGAACTACTTGATGGACGAT 59.899 50.000 0.00 0.00 0.00 3.73
2609 2732 1.475280 CCGGAACTACTTGATGGACGA 59.525 52.381 0.00 0.00 0.00 4.20
2610 2733 1.475280 TCCGGAACTACTTGATGGACG 59.525 52.381 0.00 0.00 0.00 4.79
2611 2734 3.604875 TTCCGGAACTACTTGATGGAC 57.395 47.619 14.35 0.00 0.00 4.02
2612 2735 4.627284 TTTTCCGGAACTACTTGATGGA 57.373 40.909 18.64 0.00 0.00 3.41
2642 2765 8.110002 GCTTGAAGTCAAACACACTTAATTTTG 58.890 33.333 0.00 0.00 34.10 2.44
2647 2770 5.888691 TGCTTGAAGTCAAACACACTTAA 57.111 34.783 0.00 0.00 34.10 1.85
2652 2775 7.542890 TCTTAAATTGCTTGAAGTCAAACACA 58.457 30.769 6.24 0.00 32.38 3.72
2664 2787 5.151297 ACCACCCATTCTTAAATTGCTTG 57.849 39.130 0.00 0.00 0.00 4.01
2665 2788 4.082245 CGACCACCCATTCTTAAATTGCTT 60.082 41.667 0.00 0.00 0.00 3.91
2668 2791 4.142469 GGTCGACCACCCATTCTTAAATTG 60.142 45.833 29.75 0.00 39.69 2.32
2703 2826 1.712018 CTCACTCGTGCGTATCGGGA 61.712 60.000 2.83 0.00 32.71 5.14
2704 2827 1.298413 CTCACTCGTGCGTATCGGG 60.298 63.158 0.00 0.00 34.72 5.14
2706 2829 0.308068 ATCCTCACTCGTGCGTATCG 59.692 55.000 0.00 0.00 0.00 2.92
2710 2833 0.317160 TTTCATCCTCACTCGTGCGT 59.683 50.000 0.00 0.00 0.00 5.24
2711 2834 0.994995 CTTTCATCCTCACTCGTGCG 59.005 55.000 0.00 0.00 0.00 5.34
2712 2835 2.086054 ACTTTCATCCTCACTCGTGC 57.914 50.000 0.00 0.00 0.00 5.34
2713 2836 3.364366 GCAAACTTTCATCCTCACTCGTG 60.364 47.826 0.00 0.00 0.00 4.35
2714 2837 2.808543 GCAAACTTTCATCCTCACTCGT 59.191 45.455 0.00 0.00 0.00 4.18
2732 2855 4.420168 GTCAACACTAGTTTTTGCTGCAA 58.580 39.130 11.69 11.69 35.28 4.08
2733 2856 3.181491 GGTCAACACTAGTTTTTGCTGCA 60.181 43.478 0.00 0.00 35.28 4.41
2737 2860 6.128254 GGATCTAGGTCAACACTAGTTTTTGC 60.128 42.308 5.14 5.13 39.13 3.68
2747 2870 2.159226 CGTCTGGGATCTAGGTCAACAC 60.159 54.545 5.14 0.00 0.00 3.32
2753 2876 0.824759 GTTGCGTCTGGGATCTAGGT 59.175 55.000 0.00 0.00 0.00 3.08
2754 2877 0.249073 CGTTGCGTCTGGGATCTAGG 60.249 60.000 0.00 0.00 0.00 3.02
2755 2878 0.249073 CCGTTGCGTCTGGGATCTAG 60.249 60.000 0.00 0.00 0.00 2.43
2762 2885 3.583276 TACTGCCCGTTGCGTCTGG 62.583 63.158 0.00 0.00 45.60 3.86
2767 2890 2.666862 TGGTTACTGCCCGTTGCG 60.667 61.111 0.00 0.00 45.60 4.85
2772 2895 2.046314 CCCACTGGTTACTGCCCG 60.046 66.667 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.