Multiple sequence alignment - TraesCS6B01G316000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G316000 chr6B 100.000 6394 0 0 1 6394 564056483 564062876 0.000000e+00 11808.0
1 TraesCS6B01G316000 chr6B 91.135 643 47 7 174 806 21063408 21064050 0.000000e+00 863.0
2 TraesCS6B01G316000 chr6B 90.669 643 49 8 174 806 195275161 195274520 0.000000e+00 845.0
3 TraesCS6B01G316000 chr6A 95.067 2149 80 9 3396 5542 519215669 519217793 0.000000e+00 3358.0
4 TraesCS6B01G316000 chr6A 93.930 1252 52 7 1599 2832 519213978 519215223 0.000000e+00 1869.0
5 TraesCS6B01G316000 chr6A 82.855 1429 156 50 188 1555 519212581 519213981 0.000000e+00 1199.0
6 TraesCS6B01G316000 chr6A 88.023 885 49 30 5533 6394 519218915 519219765 0.000000e+00 994.0
7 TraesCS6B01G316000 chr6A 96.802 344 9 2 2994 3335 519215323 519215666 2.000000e-159 573.0
8 TraesCS6B01G316000 chr6A 96.190 105 3 1 2924 3028 519215220 519215323 3.070000e-38 171.0
9 TraesCS6B01G316000 chr6D 94.301 2123 70 23 4311 6394 377825097 377827207 0.000000e+00 3203.0
10 TraesCS6B01G316000 chr6D 91.161 1154 70 12 1702 2832 377822663 377823807 0.000000e+00 1537.0
11 TraesCS6B01G316000 chr6D 98.064 878 14 1 3402 4279 377824224 377825098 0.000000e+00 1524.0
12 TraesCS6B01G316000 chr6D 85.006 847 53 25 837 1624 377821820 377822651 0.000000e+00 793.0
13 TraesCS6B01G316000 chr6D 95.724 421 16 2 2924 3343 377823804 377824223 0.000000e+00 676.0
14 TraesCS6B01G316000 chr7B 91.250 640 47 7 174 806 624711374 624712011 0.000000e+00 863.0
15 TraesCS6B01G316000 chr7B 90.698 645 50 7 174 808 74093313 74092669 0.000000e+00 850.0
16 TraesCS6B01G316000 chr1B 90.839 644 48 8 174 806 269218900 269218257 0.000000e+00 852.0
17 TraesCS6B01G316000 chr1B 90.669 643 49 8 174 806 644278203 644278844 0.000000e+00 845.0
18 TraesCS6B01G316000 chr1B 92.424 66 2 2 3336 3401 656234121 656234059 2.450000e-14 91.6
19 TraesCS6B01G316000 chr4B 90.683 644 50 7 174 807 629957293 629957936 0.000000e+00 848.0
20 TraesCS6B01G316000 chr4B 82.178 101 6 9 2830 2922 330820331 330820427 6.870000e-10 76.8
21 TraesCS6B01G316000 chr5B 90.528 644 51 8 174 807 699779004 699778361 0.000000e+00 843.0
22 TraesCS6B01G316000 chr5B 83.168 101 5 9 2830 2922 594837714 594837810 1.480000e-11 82.4
23 TraesCS6B01G316000 chr2B 90.543 645 49 9 174 808 770484943 770485585 0.000000e+00 843.0
24 TraesCS6B01G316000 chr2B 93.103 58 2 2 3338 3395 40435104 40435159 4.110000e-12 84.2
25 TraesCS6B01G316000 chr3A 86.681 458 45 5 2258 2703 17563710 17563257 1.600000e-135 494.0
26 TraesCS6B01G316000 chr3A 89.401 217 21 1 4898 5114 17554262 17554048 8.170000e-69 272.0
27 TraesCS6B01G316000 chr3A 90.071 141 11 3 4704 4842 17563262 17563123 5.090000e-41 180.0
28 TraesCS6B01G316000 chr5A 92.500 160 10 2 4704 4861 450257879 450258038 1.790000e-55 228.0
29 TraesCS6B01G316000 chr5A 87.681 138 16 1 2255 2392 450238663 450238799 6.640000e-35 159.0
30 TraesCS6B01G316000 chr5A 86.000 100 8 6 2831 2927 41162100 41162196 1.130000e-17 102.0
31 TraesCS6B01G316000 chr3D 92.784 97 7 0 2831 2927 426879578 426879674 2.400000e-29 141.0
32 TraesCS6B01G316000 chr3D 90.164 61 6 0 3327 3387 362238275 362238335 5.310000e-11 80.5
33 TraesCS6B01G316000 chr4A 89.320 103 9 2 2826 2927 615883455 615883556 1.870000e-25 128.0
34 TraesCS6B01G316000 chr4A 88.350 103 10 2 2826 2927 615880755 615880856 8.710000e-24 122.0
35 TraesCS6B01G316000 chr4A 87.379 103 11 2 2826 2927 615894224 615894325 4.050000e-22 117.0
36 TraesCS6B01G316000 chr2A 89.873 79 6 2 2831 2908 744787956 744787879 4.080000e-17 100.0
37 TraesCS6B01G316000 chr3B 98.000 50 1 0 3338 3387 407184978 407184929 3.180000e-13 87.9
38 TraesCS6B01G316000 chr3B 97.917 48 1 0 3340 3387 472309440 472309393 4.110000e-12 84.2
39 TraesCS6B01G316000 chrUn 96.154 52 2 0 3336 3387 135090807 135090756 1.140000e-12 86.1
40 TraesCS6B01G316000 chrUn 96.154 52 2 0 3336 3387 152687663 152687612 1.140000e-12 86.1
41 TraesCS6B01G316000 chr4D 94.444 54 3 0 3334 3387 449455609 449455662 4.110000e-12 84.2
42 TraesCS6B01G316000 chr2D 93.103 58 3 1 3330 3387 524577111 524577055 4.110000e-12 84.2
43 TraesCS6B01G316000 chr7D 82.178 101 6 9 2830 2922 76185539 76185635 6.870000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G316000 chr6B 564056483 564062876 6393 False 11808.000000 11808 100.0000 1 6394 1 chr6B.!!$F2 6393
1 TraesCS6B01G316000 chr6B 21063408 21064050 642 False 863.000000 863 91.1350 174 806 1 chr6B.!!$F1 632
2 TraesCS6B01G316000 chr6B 195274520 195275161 641 True 845.000000 845 90.6690 174 806 1 chr6B.!!$R1 632
3 TraesCS6B01G316000 chr6A 519212581 519219765 7184 False 1360.666667 3358 92.1445 188 6394 6 chr6A.!!$F1 6206
4 TraesCS6B01G316000 chr6D 377821820 377827207 5387 False 1546.600000 3203 92.8512 837 6394 5 chr6D.!!$F1 5557
5 TraesCS6B01G316000 chr7B 624711374 624712011 637 False 863.000000 863 91.2500 174 806 1 chr7B.!!$F1 632
6 TraesCS6B01G316000 chr7B 74092669 74093313 644 True 850.000000 850 90.6980 174 808 1 chr7B.!!$R1 634
7 TraesCS6B01G316000 chr1B 269218257 269218900 643 True 852.000000 852 90.8390 174 806 1 chr1B.!!$R1 632
8 TraesCS6B01G316000 chr1B 644278203 644278844 641 False 845.000000 845 90.6690 174 806 1 chr1B.!!$F1 632
9 TraesCS6B01G316000 chr4B 629957293 629957936 643 False 848.000000 848 90.6830 174 807 1 chr4B.!!$F2 633
10 TraesCS6B01G316000 chr5B 699778361 699779004 643 True 843.000000 843 90.5280 174 807 1 chr5B.!!$R1 633
11 TraesCS6B01G316000 chr2B 770484943 770485585 642 False 843.000000 843 90.5430 174 808 1 chr2B.!!$F2 634
12 TraesCS6B01G316000 chr3A 17563123 17563710 587 True 337.000000 494 88.3760 2258 4842 2 chr3A.!!$R2 2584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 550 0.248289 TCGGTTTGGATCCTTCCGAC 59.752 55.000 28.02 14.53 45.89 4.79 F
695 707 0.389426 GCCTTCGGTTCGCTTCAGTA 60.389 55.000 0.00 0.00 0.00 2.74 F
849 867 1.405463 CAGCGATGTGTCTACTAGGCA 59.595 52.381 0.00 0.00 0.00 4.75 F
1561 1638 0.178975 TCCCCCGTTTTCTGTTGCAT 60.179 50.000 0.00 0.00 0.00 3.96 F
2509 2617 0.454452 TGACAGATCGCGTGAACTCG 60.454 55.000 5.77 5.19 0.00 4.18 F
3355 3500 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37 F
4449 4603 0.179034 GCCCACTGGAGGATGTCATC 60.179 60.000 4.06 4.06 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1516 0.247736 AGCCTTCACGGATCACAGAC 59.752 55.0 0.00 0.0 33.16 3.51 R
1532 1609 0.402504 AAACGGGGGATGTGCTAACA 59.597 50.0 0.00 0.0 41.58 2.41 R
2087 2183 0.973632 TGTTTAGCTTCTCTGGCGGA 59.026 50.0 0.00 0.0 34.52 5.54 R
2906 3014 0.115745 ACTCCCTCCGTCCCAAAGTA 59.884 55.0 0.00 0.0 0.00 2.24 R
4031 4176 0.032813 CCCCATCCATCCAAGCAAGT 60.033 55.0 0.00 0.0 0.00 3.16 R
5108 5263 0.619255 TGGGCCCGAACTCCATCTTA 60.619 55.0 19.37 0.0 0.00 2.10 R
5870 7172 0.322456 CTTTGCCACTTCGGGGATGA 60.322 55.0 0.00 0.0 34.06 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.588719 TGCCAAACAATTTGCTACTCTATT 57.411 33.333 0.00 0.00 39.31 1.73
24 25 6.991938 TGCCAAACAATTTGCTACTCTATTT 58.008 32.000 0.00 0.00 39.31 1.40
25 26 7.441017 TGCCAAACAATTTGCTACTCTATTTT 58.559 30.769 0.00 0.00 39.31 1.82
26 27 7.384660 TGCCAAACAATTTGCTACTCTATTTTG 59.615 33.333 0.00 0.00 39.31 2.44
27 28 7.148590 GCCAAACAATTTGCTACTCTATTTTGG 60.149 37.037 13.72 13.72 39.31 3.28
28 29 7.872483 CCAAACAATTTGCTACTCTATTTTGGT 59.128 33.333 11.37 0.00 39.31 3.67
29 30 8.915654 CAAACAATTTGCTACTCTATTTTGGTC 58.084 33.333 0.00 0.00 33.36 4.02
30 31 7.759489 ACAATTTGCTACTCTATTTTGGTCA 57.241 32.000 0.00 0.00 0.00 4.02
31 32 7.593825 ACAATTTGCTACTCTATTTTGGTCAC 58.406 34.615 0.00 0.00 0.00 3.67
32 33 5.856126 TTTGCTACTCTATTTTGGTCACG 57.144 39.130 0.00 0.00 0.00 4.35
33 34 3.857052 TGCTACTCTATTTTGGTCACGG 58.143 45.455 0.00 0.00 0.00 4.94
34 35 3.259876 TGCTACTCTATTTTGGTCACGGT 59.740 43.478 0.00 0.00 0.00 4.83
35 36 3.617263 GCTACTCTATTTTGGTCACGGTG 59.383 47.826 0.56 0.56 0.00 4.94
36 37 3.764237 ACTCTATTTTGGTCACGGTGT 57.236 42.857 8.17 0.00 0.00 4.16
37 38 4.877378 ACTCTATTTTGGTCACGGTGTA 57.123 40.909 8.17 0.00 0.00 2.90
38 39 5.217978 ACTCTATTTTGGTCACGGTGTAA 57.782 39.130 8.17 0.02 0.00 2.41
39 40 5.801380 ACTCTATTTTGGTCACGGTGTAAT 58.199 37.500 8.17 4.71 0.00 1.89
40 41 6.235664 ACTCTATTTTGGTCACGGTGTAATT 58.764 36.000 8.17 0.00 0.00 1.40
41 42 6.713450 ACTCTATTTTGGTCACGGTGTAATTT 59.287 34.615 8.17 0.00 0.00 1.82
42 43 7.879160 ACTCTATTTTGGTCACGGTGTAATTTA 59.121 33.333 8.17 0.00 0.00 1.40
43 44 8.795842 TCTATTTTGGTCACGGTGTAATTTAT 57.204 30.769 8.17 0.33 0.00 1.40
44 45 8.670135 TCTATTTTGGTCACGGTGTAATTTATG 58.330 33.333 8.17 0.00 0.00 1.90
45 46 6.636562 TTTTGGTCACGGTGTAATTTATGT 57.363 33.333 8.17 0.00 0.00 2.29
46 47 5.614923 TTGGTCACGGTGTAATTTATGTG 57.385 39.130 8.17 0.00 0.00 3.21
47 48 4.004314 TGGTCACGGTGTAATTTATGTGG 58.996 43.478 8.17 0.00 0.00 4.17
48 49 4.255301 GGTCACGGTGTAATTTATGTGGA 58.745 43.478 8.17 0.00 0.00 4.02
49 50 4.696402 GGTCACGGTGTAATTTATGTGGAA 59.304 41.667 8.17 0.00 0.00 3.53
50 51 5.391203 GGTCACGGTGTAATTTATGTGGAAC 60.391 44.000 8.17 0.00 37.35 3.62
65 66 4.686839 GTGGAACAAGCTCCTTATCAAC 57.313 45.455 0.00 0.00 44.16 3.18
66 67 3.440522 GTGGAACAAGCTCCTTATCAACC 59.559 47.826 0.00 0.00 44.16 3.77
67 68 3.073798 TGGAACAAGCTCCTTATCAACCA 59.926 43.478 0.00 0.00 36.35 3.67
68 69 4.263905 TGGAACAAGCTCCTTATCAACCAT 60.264 41.667 0.00 0.00 36.35 3.55
69 70 4.336713 GGAACAAGCTCCTTATCAACCATC 59.663 45.833 0.00 0.00 32.21 3.51
70 71 4.574674 ACAAGCTCCTTATCAACCATCA 57.425 40.909 0.00 0.00 0.00 3.07
71 72 4.922206 ACAAGCTCCTTATCAACCATCAA 58.078 39.130 0.00 0.00 0.00 2.57
72 73 4.946157 ACAAGCTCCTTATCAACCATCAAG 59.054 41.667 0.00 0.00 0.00 3.02
73 74 5.188434 CAAGCTCCTTATCAACCATCAAGA 58.812 41.667 0.00 0.00 0.00 3.02
74 75 4.775236 AGCTCCTTATCAACCATCAAGAC 58.225 43.478 0.00 0.00 0.00 3.01
75 76 4.472833 AGCTCCTTATCAACCATCAAGACT 59.527 41.667 0.00 0.00 0.00 3.24
76 77 5.045286 AGCTCCTTATCAACCATCAAGACTT 60.045 40.000 0.00 0.00 0.00 3.01
77 78 5.649831 GCTCCTTATCAACCATCAAGACTTT 59.350 40.000 0.00 0.00 0.00 2.66
78 79 6.823689 GCTCCTTATCAACCATCAAGACTTTA 59.176 38.462 0.00 0.00 0.00 1.85
79 80 7.336931 GCTCCTTATCAACCATCAAGACTTTAA 59.663 37.037 0.00 0.00 0.00 1.52
80 81 9.401058 CTCCTTATCAACCATCAAGACTTTAAT 57.599 33.333 0.00 0.00 0.00 1.40
81 82 9.396022 TCCTTATCAACCATCAAGACTTTAATC 57.604 33.333 0.00 0.00 0.00 1.75
82 83 8.624776 CCTTATCAACCATCAAGACTTTAATCC 58.375 37.037 0.00 0.00 0.00 3.01
83 84 8.519799 TTATCAACCATCAAGACTTTAATCCC 57.480 34.615 0.00 0.00 0.00 3.85
84 85 5.261216 TCAACCATCAAGACTTTAATCCCC 58.739 41.667 0.00 0.00 0.00 4.81
85 86 4.946160 ACCATCAAGACTTTAATCCCCA 57.054 40.909 0.00 0.00 0.00 4.96
86 87 5.269554 ACCATCAAGACTTTAATCCCCAA 57.730 39.130 0.00 0.00 0.00 4.12
87 88 5.650283 ACCATCAAGACTTTAATCCCCAAA 58.350 37.500 0.00 0.00 0.00 3.28
88 89 5.716703 ACCATCAAGACTTTAATCCCCAAAG 59.283 40.000 0.00 0.00 38.65 2.77
89 90 5.394553 CCATCAAGACTTTAATCCCCAAAGC 60.395 44.000 0.00 0.00 36.63 3.51
90 91 4.086457 TCAAGACTTTAATCCCCAAAGCC 58.914 43.478 0.00 0.00 36.63 4.35
91 92 3.825908 AGACTTTAATCCCCAAAGCCA 57.174 42.857 0.00 0.00 36.63 4.75
92 93 4.126520 AGACTTTAATCCCCAAAGCCAA 57.873 40.909 0.00 0.00 36.63 4.52
93 94 4.488770 AGACTTTAATCCCCAAAGCCAAA 58.511 39.130 0.00 0.00 36.63 3.28
94 95 5.093677 AGACTTTAATCCCCAAAGCCAAAT 58.906 37.500 0.00 0.00 36.63 2.32
95 96 5.046376 AGACTTTAATCCCCAAAGCCAAATG 60.046 40.000 0.00 0.00 36.63 2.32
96 97 4.843516 ACTTTAATCCCCAAAGCCAAATGA 59.156 37.500 0.00 0.00 36.63 2.57
97 98 5.488561 ACTTTAATCCCCAAAGCCAAATGAT 59.511 36.000 0.00 0.00 36.63 2.45
98 99 6.671779 ACTTTAATCCCCAAAGCCAAATGATA 59.328 34.615 0.00 0.00 36.63 2.15
99 100 7.348011 ACTTTAATCCCCAAAGCCAAATGATAT 59.652 33.333 0.00 0.00 36.63 1.63
100 101 8.789767 TTTAATCCCCAAAGCCAAATGATATA 57.210 30.769 0.00 0.00 0.00 0.86
101 102 8.971032 TTAATCCCCAAAGCCAAATGATATAT 57.029 30.769 0.00 0.00 0.00 0.86
141 142 8.920665 TCATTGCCAAACTAAAATAAATTCACG 58.079 29.630 0.00 0.00 0.00 4.35
142 143 7.644986 TTGCCAAACTAAAATAAATTCACGG 57.355 32.000 0.00 0.00 0.00 4.94
143 144 6.750148 TGCCAAACTAAAATAAATTCACGGT 58.250 32.000 0.00 0.00 0.00 4.83
144 145 7.210873 TGCCAAACTAAAATAAATTCACGGTT 58.789 30.769 0.00 0.00 0.00 4.44
145 146 7.711339 TGCCAAACTAAAATAAATTCACGGTTT 59.289 29.630 0.00 0.00 0.00 3.27
146 147 9.194271 GCCAAACTAAAATAAATTCACGGTTTA 57.806 29.630 0.00 0.00 0.00 2.01
159 160 9.857957 AAATTCACGGTTTACTTAACTTTTGAA 57.142 25.926 0.00 0.00 36.93 2.69
160 161 9.857957 AATTCACGGTTTACTTAACTTTTGAAA 57.142 25.926 0.00 0.00 34.96 2.69
162 163 8.844441 TCACGGTTTACTTAACTTTTGAAATG 57.156 30.769 0.00 0.00 36.93 2.32
163 164 8.460428 TCACGGTTTACTTAACTTTTGAAATGT 58.540 29.630 0.00 0.00 36.93 2.71
164 165 8.528295 CACGGTTTACTTAACTTTTGAAATGTG 58.472 33.333 0.00 0.00 36.93 3.21
165 166 7.221259 ACGGTTTACTTAACTTTTGAAATGTGC 59.779 33.333 0.00 0.00 36.93 4.57
166 167 7.221067 CGGTTTACTTAACTTTTGAAATGTGCA 59.779 33.333 0.00 0.00 36.93 4.57
167 168 9.040939 GGTTTACTTAACTTTTGAAATGTGCAT 57.959 29.630 0.00 0.00 36.93 3.96
168 169 9.848172 GTTTACTTAACTTTTGAAATGTGCATG 57.152 29.630 0.00 0.00 33.79 4.06
169 170 8.586570 TTACTTAACTTTTGAAATGTGCATGG 57.413 30.769 0.00 0.00 0.00 3.66
170 171 6.581712 ACTTAACTTTTGAAATGTGCATGGT 58.418 32.000 0.00 0.00 0.00 3.55
171 172 6.479660 ACTTAACTTTTGAAATGTGCATGGTG 59.520 34.615 0.00 0.00 0.00 4.17
172 173 3.731089 ACTTTTGAAATGTGCATGGTGG 58.269 40.909 0.00 0.00 0.00 4.61
315 319 2.603953 GGAGACTCCGTTTTTAGTCGG 58.396 52.381 5.55 0.00 45.47 4.79
346 350 2.154462 CTTGCTAGGGTTTGTGTCCTG 58.846 52.381 0.00 0.00 34.75 3.86
502 512 1.978542 CTCGGATCTCGTCGTTGTTT 58.021 50.000 0.00 0.00 40.32 2.83
512 522 4.443063 TCTCGTCGTTGTTTGTCTACATTG 59.557 41.667 0.00 0.00 0.00 2.82
540 550 0.248289 TCGGTTTGGATCCTTCCGAC 59.752 55.000 28.02 14.53 45.89 4.79
544 554 2.438392 GGTTTGGATCCTTCCGACCTAT 59.562 50.000 14.23 0.00 45.89 2.57
562 572 4.879545 ACCTATGTTATTTTTCATCGGCGT 59.120 37.500 6.85 0.00 32.44 5.68
565 575 2.737783 TGTTATTTTTCATCGGCGTCGT 59.262 40.909 10.18 0.00 37.69 4.34
575 585 2.251371 GGCGTCGTTTGCTGTTCC 59.749 61.111 0.00 0.00 0.00 3.62
583 595 0.887387 GTTTGCTGTTCCGGGTGCTA 60.887 55.000 0.00 0.00 0.00 3.49
609 621 1.320344 TGAGGCCTTAGCACGACGAT 61.320 55.000 6.77 0.00 42.56 3.73
695 707 0.389426 GCCTTCGGTTCGCTTCAGTA 60.389 55.000 0.00 0.00 0.00 2.74
728 740 3.947196 TCGCTAGGTGGTCTACGAATTTA 59.053 43.478 0.00 0.00 32.69 1.40
771 789 6.426633 TGTTCGTTGTACTGTCATGATTGAAT 59.573 34.615 0.00 0.00 32.48 2.57
847 865 3.304123 GCTACAGCGATGTGTCTACTAGG 60.304 52.174 18.14 0.00 31.46 3.02
848 866 1.405821 ACAGCGATGTGTCTACTAGGC 59.594 52.381 5.03 0.00 0.00 3.93
849 867 1.405463 CAGCGATGTGTCTACTAGGCA 59.595 52.381 0.00 0.00 0.00 4.75
850 868 1.678627 AGCGATGTGTCTACTAGGCAG 59.321 52.381 0.00 0.00 25.72 4.85
851 869 1.676529 GCGATGTGTCTACTAGGCAGA 59.323 52.381 0.00 0.00 25.72 4.26
852 870 2.287308 GCGATGTGTCTACTAGGCAGAG 60.287 54.545 0.00 0.00 25.72 3.35
977 1001 4.849329 GCCTACCCGTCACGCTCG 62.849 72.222 0.00 0.00 0.00 5.03
978 1002 4.849329 CCTACCCGTCACGCTCGC 62.849 72.222 0.00 0.00 0.00 5.03
979 1003 3.812019 CTACCCGTCACGCTCGCT 61.812 66.667 0.00 0.00 0.00 4.93
980 1004 3.338126 CTACCCGTCACGCTCGCTT 62.338 63.158 0.00 0.00 0.00 4.68
1366 1415 2.029290 AGTGTTCGACGAAATGGCTAGT 60.029 45.455 12.67 0.00 0.00 2.57
1384 1433 4.621038 GCTAGTTGGACAAGTAGAACTCCC 60.621 50.000 24.03 7.36 43.60 4.30
1391 1440 3.228453 ACAAGTAGAACTCCCACGAGAA 58.772 45.455 0.00 0.00 38.52 2.87
1392 1441 3.833070 ACAAGTAGAACTCCCACGAGAAT 59.167 43.478 0.00 0.00 38.52 2.40
1395 1444 6.183360 ACAAGTAGAACTCCCACGAGAATATC 60.183 42.308 0.00 0.00 38.52 1.63
1413 1464 1.975407 CAGTTCAGGGGCTTGCCTG 60.975 63.158 11.71 3.17 35.58 4.85
1415 1466 2.115910 TTCAGGGGCTTGCCTGTG 59.884 61.111 11.71 9.13 35.73 3.66
1422 1497 2.401766 GGCTTGCCTGTGGATCACG 61.402 63.158 4.11 0.00 37.14 4.35
1463 1538 2.094182 TCTGTGATCCGTGAAGGCTTAC 60.094 50.000 0.00 0.00 40.77 2.34
1470 1545 1.608025 CCGTGAAGGCTTACTGCTGAA 60.608 52.381 0.00 0.00 42.39 3.02
1471 1546 2.143122 CGTGAAGGCTTACTGCTGAAA 58.857 47.619 0.00 0.00 42.39 2.69
1472 1547 2.096218 CGTGAAGGCTTACTGCTGAAAC 60.096 50.000 0.00 0.00 42.39 2.78
1510 1587 2.053627 CGAGAACAAACCTTGCATTGC 58.946 47.619 0.46 0.46 0.00 3.56
1519 1596 4.804868 AACCTTGCATTGCATTGTATGA 57.195 36.364 12.95 0.00 38.76 2.15
1532 1609 2.549064 TGTATGACTGCAGCAGTGTT 57.451 45.000 33.03 20.42 45.44 3.32
1543 1620 2.666619 GCAGCAGTGTTGTTAGCACATC 60.667 50.000 8.86 0.00 39.17 3.06
1552 1629 1.202952 TGTTAGCACATCCCCCGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
1555 1632 0.609131 AGCACATCCCCCGTTTTCTG 60.609 55.000 0.00 0.00 0.00 3.02
1561 1638 0.178975 TCCCCCGTTTTCTGTTGCAT 60.179 50.000 0.00 0.00 0.00 3.96
1578 1655 5.170021 GTTGCATTCCAGATATTTTGCACA 58.830 37.500 0.00 0.00 39.57 4.57
1579 1656 5.001237 TGCATTCCAGATATTTTGCACAG 57.999 39.130 0.00 0.00 35.36 3.66
1580 1657 3.800506 GCATTCCAGATATTTTGCACAGC 59.199 43.478 0.00 0.00 0.00 4.40
1594 1671 4.286297 TGCACAGCTAGACCAAATTACT 57.714 40.909 0.00 0.00 0.00 2.24
1597 1674 6.234920 TGCACAGCTAGACCAAATTACTAAA 58.765 36.000 0.00 0.00 0.00 1.85
1634 1711 3.723260 GCTGAAGCCTGAAGTAGATACC 58.277 50.000 0.00 0.00 34.31 2.73
1645 1722 5.428253 TGAAGTAGATACCCTTTGTCATGC 58.572 41.667 0.00 0.00 0.00 4.06
1686 1763 3.135225 CAGTTGAAACGTCACACCCATA 58.865 45.455 0.00 0.00 31.90 2.74
1790 1867 1.489649 AGCTAGGAGTCACGGCTACTA 59.510 52.381 0.00 0.00 31.03 1.82
1802 1881 3.804325 CACGGCTACTACCAAATCAGATG 59.196 47.826 0.00 0.00 0.00 2.90
1865 1957 4.194640 CTGCACATTCATGGCTAGTTACT 58.805 43.478 0.00 0.00 0.00 2.24
1907 2003 5.966636 TCTGCATAACGTCATATGAACAC 57.033 39.130 7.07 0.00 35.69 3.32
1910 2006 5.863898 TGCATAACGTCATATGAACACAAC 58.136 37.500 7.07 0.00 35.69 3.32
1916 2012 6.946229 ACGTCATATGAACACAACTAGTTC 57.054 37.500 7.07 0.00 44.26 3.01
1921 2017 7.966753 GTCATATGAACACAACTAGTTCGACTA 59.033 37.037 7.07 0.00 46.34 2.59
1994 2090 0.769873 ATGATGATGACCAGCTCCCC 59.230 55.000 0.00 0.00 31.20 4.81
2087 2183 7.603180 TCTGTCTGTTATGGCTTATGACTAT 57.397 36.000 0.00 0.00 0.00 2.12
2218 2314 3.473113 AAATTACAAGGTGGAGCCCAT 57.527 42.857 0.00 0.00 35.28 4.00
2228 2324 2.821366 GAGCCCATGTCACCAGCG 60.821 66.667 0.00 0.00 0.00 5.18
2306 2402 2.609459 CCGCATGAAGGTAGATCACAAC 59.391 50.000 0.00 0.00 0.00 3.32
2324 2420 4.696877 CACAACCTTGTTCTGCATCTATCA 59.303 41.667 0.00 0.00 39.91 2.15
2370 2466 4.634184 AGAAATGATGTTCTGATGCAGC 57.366 40.909 0.00 0.00 36.48 5.25
2392 2488 5.765182 AGCCTGATACAATATTTACTGGTGC 59.235 40.000 0.00 0.00 0.00 5.01
2393 2489 5.765182 GCCTGATACAATATTTACTGGTGCT 59.235 40.000 0.00 0.00 0.00 4.40
2428 2524 3.254657 CCTTCCATTTTTGCCGTGTAAGA 59.745 43.478 0.00 0.00 0.00 2.10
2509 2617 0.454452 TGACAGATCGCGTGAACTCG 60.454 55.000 5.77 5.19 0.00 4.18
2837 2945 9.802039 TGTTTTTATGTTTATCAAGTACTCCCT 57.198 29.630 0.00 0.00 0.00 4.20
2839 2947 9.457436 TTTTTATGTTTATCAAGTACTCCCTCC 57.543 33.333 0.00 0.00 0.00 4.30
2840 2948 7.989947 TTATGTTTATCAAGTACTCCCTCCT 57.010 36.000 0.00 0.00 0.00 3.69
2841 2949 6.893020 ATGTTTATCAAGTACTCCCTCCTT 57.107 37.500 0.00 0.00 0.00 3.36
2842 2950 6.697641 TGTTTATCAAGTACTCCCTCCTTT 57.302 37.500 0.00 0.00 0.00 3.11
2843 2951 6.708285 TGTTTATCAAGTACTCCCTCCTTTC 58.292 40.000 0.00 0.00 0.00 2.62
2844 2952 5.952347 TTATCAAGTACTCCCTCCTTTCC 57.048 43.478 0.00 0.00 0.00 3.13
2845 2953 3.269592 TCAAGTACTCCCTCCTTTCCA 57.730 47.619 0.00 0.00 0.00 3.53
2846 2954 3.593942 TCAAGTACTCCCTCCTTTCCAA 58.406 45.455 0.00 0.00 0.00 3.53
2847 2955 3.977999 TCAAGTACTCCCTCCTTTCCAAA 59.022 43.478 0.00 0.00 0.00 3.28
2848 2956 4.414182 TCAAGTACTCCCTCCTTTCCAAAA 59.586 41.667 0.00 0.00 0.00 2.44
2849 2957 5.074515 TCAAGTACTCCCTCCTTTCCAAAAT 59.925 40.000 0.00 0.00 0.00 1.82
2850 2958 6.273730 TCAAGTACTCCCTCCTTTCCAAAATA 59.726 38.462 0.00 0.00 0.00 1.40
2851 2959 6.713731 AGTACTCCCTCCTTTCCAAAATAA 57.286 37.500 0.00 0.00 0.00 1.40
2852 2960 6.722328 AGTACTCCCTCCTTTCCAAAATAAG 58.278 40.000 0.00 0.00 0.00 1.73
2853 2961 5.600669 ACTCCCTCCTTTCCAAAATAAGT 57.399 39.130 0.00 0.00 0.00 2.24
2854 2962 5.325239 ACTCCCTCCTTTCCAAAATAAGTG 58.675 41.667 0.00 0.00 0.00 3.16
2855 2963 5.162980 ACTCCCTCCTTTCCAAAATAAGTGT 60.163 40.000 0.00 0.00 0.00 3.55
2856 2964 5.321927 TCCCTCCTTTCCAAAATAAGTGTC 58.678 41.667 0.00 0.00 0.00 3.67
2857 2965 5.074515 TCCCTCCTTTCCAAAATAAGTGTCT 59.925 40.000 0.00 0.00 0.00 3.41
2858 2966 5.416013 CCCTCCTTTCCAAAATAAGTGTCTC 59.584 44.000 0.00 0.00 0.00 3.36
2859 2967 6.003950 CCTCCTTTCCAAAATAAGTGTCTCA 58.996 40.000 0.00 0.00 0.00 3.27
2860 2968 6.490040 CCTCCTTTCCAAAATAAGTGTCTCAA 59.510 38.462 0.00 0.00 0.00 3.02
2861 2969 7.272037 TCCTTTCCAAAATAAGTGTCTCAAC 57.728 36.000 0.00 0.00 0.00 3.18
2862 2970 7.060421 TCCTTTCCAAAATAAGTGTCTCAACT 58.940 34.615 0.00 0.00 0.00 3.16
2863 2971 7.228706 TCCTTTCCAAAATAAGTGTCTCAACTC 59.771 37.037 0.00 0.00 0.00 3.01
2864 2972 7.229506 CCTTTCCAAAATAAGTGTCTCAACTCT 59.770 37.037 0.00 0.00 0.00 3.24
2865 2973 7.496529 TTCCAAAATAAGTGTCTCAACTCTG 57.503 36.000 0.00 0.00 29.93 3.35
2866 2974 5.997746 TCCAAAATAAGTGTCTCAACTCTGG 59.002 40.000 0.00 0.00 29.93 3.86
2867 2975 5.765182 CCAAAATAAGTGTCTCAACTCTGGT 59.235 40.000 0.00 0.00 29.93 4.00
2868 2976 6.934645 CCAAAATAAGTGTCTCAACTCTGGTA 59.065 38.462 0.00 0.00 29.93 3.25
2869 2977 7.095187 CCAAAATAAGTGTCTCAACTCTGGTAC 60.095 40.741 0.00 0.00 29.93 3.34
2870 2978 6.665992 AATAAGTGTCTCAACTCTGGTACA 57.334 37.500 0.00 0.00 29.93 2.90
2871 2979 6.665992 ATAAGTGTCTCAACTCTGGTACAA 57.334 37.500 0.00 0.00 38.70 2.41
2872 2980 4.323553 AGTGTCTCAACTCTGGTACAAC 57.676 45.455 0.00 0.00 38.70 3.32
2873 2981 3.961408 AGTGTCTCAACTCTGGTACAACT 59.039 43.478 0.00 0.00 38.70 3.16
2874 2982 4.406003 AGTGTCTCAACTCTGGTACAACTT 59.594 41.667 0.00 0.00 38.70 2.66
2875 2983 5.104900 AGTGTCTCAACTCTGGTACAACTTT 60.105 40.000 0.00 0.00 38.70 2.66
2876 2984 5.006746 GTGTCTCAACTCTGGTACAACTTTG 59.993 44.000 0.00 0.00 38.70 2.77
2877 2985 5.116882 GTCTCAACTCTGGTACAACTTTGT 58.883 41.667 0.00 0.00 44.86 2.83
2878 2986 6.127281 TGTCTCAACTCTGGTACAACTTTGTA 60.127 38.462 0.00 0.00 42.35 2.41
2915 3023 7.038154 CAAAGTTGAGACATTTACTTTGGGA 57.962 36.000 15.25 0.00 46.83 4.37
2916 3024 6.635030 AAGTTGAGACATTTACTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
2917 3025 4.755123 AGTTGAGACATTTACTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2918 3026 3.670625 TGAGACATTTACTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2919 3027 3.325425 TGAGACATTTACTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2920 3028 3.933332 GAGACATTTACTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2921 3029 3.007635 GACATTTACTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2922 3030 2.290705 ACATTTACTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2936 3044 2.782341 ACGGAGGGAGTAGTACCTATGT 59.218 50.000 0.00 0.05 37.18 2.29
3074 3216 2.277084 CGCTTATTTTAGTGGCTCCGT 58.723 47.619 0.00 0.00 0.00 4.69
3349 3494 8.709272 AACTGTAATAGAATACTACTCCCTCC 57.291 38.462 0.00 0.00 0.00 4.30
3350 3495 6.941436 ACTGTAATAGAATACTACTCCCTCCG 59.059 42.308 0.00 0.00 0.00 4.63
3351 3496 6.845908 TGTAATAGAATACTACTCCCTCCGT 58.154 40.000 0.00 0.00 0.00 4.69
3352 3497 6.939163 TGTAATAGAATACTACTCCCTCCGTC 59.061 42.308 0.00 0.00 0.00 4.79
3353 3498 3.226682 AGAATACTACTCCCTCCGTCC 57.773 52.381 0.00 0.00 0.00 4.79
3354 3499 2.158490 AGAATACTACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 0.00 4.46
3355 3500 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
3356 3501 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
3357 3502 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3358 3503 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3359 3504 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3360 3505 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3361 3506 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3362 3507 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3363 3508 2.563179 CTCCCTCCGTCCCATAATGTAG 59.437 54.545 0.00 0.00 0.00 2.74
3364 3509 1.623811 CCCTCCGTCCCATAATGTAGG 59.376 57.143 0.00 0.00 0.00 3.18
3365 3510 2.605257 CCTCCGTCCCATAATGTAGGA 58.395 52.381 0.00 0.00 0.00 2.94
3366 3511 2.299297 CCTCCGTCCCATAATGTAGGAC 59.701 54.545 0.00 0.00 45.49 3.85
3392 3537 5.471556 TTTTGACACTAATGTAGGACGGA 57.528 39.130 0.00 0.00 39.95 4.69
3393 3538 4.713824 TTGACACTAATGTAGGACGGAG 57.286 45.455 0.00 0.00 39.95 4.63
3394 3539 3.021695 TGACACTAATGTAGGACGGAGG 58.978 50.000 0.00 0.00 39.95 4.30
3395 3540 2.361438 GACACTAATGTAGGACGGAGGG 59.639 54.545 0.00 0.00 39.95 4.30
3396 3541 2.024655 ACACTAATGTAGGACGGAGGGA 60.025 50.000 0.00 0.00 37.26 4.20
3397 3542 2.623889 CACTAATGTAGGACGGAGGGAG 59.376 54.545 0.00 0.00 0.00 4.30
3398 3543 2.240279 CTAATGTAGGACGGAGGGAGG 58.760 57.143 0.00 0.00 0.00 4.30
3415 3560 6.770303 GGAGGGAGGAGAATTTATCTTTCTTG 59.230 42.308 0.00 0.00 38.96 3.02
3480 3625 9.381033 CTCCATTGCTAGATTCTAATTGATAGG 57.619 37.037 0.00 0.00 32.09 2.57
3522 3667 2.694628 TGTAGATGGAAATGCATTGCCC 59.305 45.455 30.23 24.09 34.32 5.36
3722 3867 3.322254 AGGGTATCTTCGGTGATAAGCAG 59.678 47.826 0.00 0.00 31.61 4.24
3852 3997 3.788227 TTTGTGCAGTACCCTCAGAAT 57.212 42.857 0.00 0.00 0.00 2.40
3960 4105 5.121768 CCTAAAATTTCGACGAAGGACACAT 59.878 40.000 10.61 0.00 0.00 3.21
4031 4176 6.295249 TGACTTGATGTTCAGTTGGATAACA 58.705 36.000 0.00 0.00 39.30 2.41
4186 4331 1.742268 GCAGATGAGCTGGAAGAAACC 59.258 52.381 0.00 0.00 45.03 3.27
4252 4397 3.481453 GGGCATTGAGGTCTCTTTATCC 58.519 50.000 0.00 0.00 0.00 2.59
4301 4446 9.177608 ACATTTTCATCGATCCATTTCTCTTTA 57.822 29.630 0.00 0.00 0.00 1.85
4335 4481 2.097825 GACAATCCTTCAGCAATGCCT 58.902 47.619 0.00 0.00 0.00 4.75
4365 4511 6.413783 TGTTCTTCCTTCTATGTGTGTACA 57.586 37.500 0.00 0.00 41.89 2.90
4370 4516 8.362464 TCTTCCTTCTATGTGTGTACAGTTAT 57.638 34.615 0.00 0.00 40.79 1.89
4371 4517 9.470399 TCTTCCTTCTATGTGTGTACAGTTATA 57.530 33.333 0.00 0.00 40.79 0.98
4372 4518 9.517609 CTTCCTTCTATGTGTGTACAGTTATAC 57.482 37.037 0.00 0.00 40.79 1.47
4373 4519 8.584063 TCCTTCTATGTGTGTACAGTTATACA 57.416 34.615 0.00 0.00 40.79 2.29
4374 4520 8.683615 TCCTTCTATGTGTGTACAGTTATACAG 58.316 37.037 0.00 0.00 40.79 2.74
4375 4521 8.683615 CCTTCTATGTGTGTACAGTTATACAGA 58.316 37.037 0.00 0.00 40.79 3.41
4379 4525 9.452065 CTATGTGTGTACAGTTATACAGATCAC 57.548 37.037 0.00 0.00 40.79 3.06
4380 4526 7.222000 TGTGTGTACAGTTATACAGATCACA 57.778 36.000 0.00 0.00 37.29 3.58
4381 4527 7.836842 TGTGTGTACAGTTATACAGATCACAT 58.163 34.615 0.00 0.00 35.93 3.21
4389 4543 7.382488 ACAGTTATACAGATCACATATTGACGC 59.618 37.037 0.00 0.00 36.92 5.19
4449 4603 0.179034 GCCCACTGGAGGATGTCATC 60.179 60.000 4.06 4.06 0.00 2.92
4527 4681 4.995594 GGCTTCTTAGGCATGGCT 57.004 55.556 26.37 26.37 45.79 4.75
4716 4870 5.765182 CCCCACCTTTTACTATGTCATCATC 59.235 44.000 0.00 0.00 35.70 2.92
4891 5046 3.021269 TCCATTCATATACGTCGTGGC 57.979 47.619 8.47 0.00 0.00 5.01
5036 5191 0.680921 CGATTGGTGGAATGCTGGGT 60.681 55.000 0.00 0.00 0.00 4.51
5108 5263 2.111972 TCTGGAGAGGTACAAGAAGGGT 59.888 50.000 0.00 0.00 0.00 4.34
5172 5327 1.372997 ACGATCGCGCTGTTCAACT 60.373 52.632 16.60 0.00 42.48 3.16
5205 5360 3.965539 CTCGGGCTGGGCAGAGTTG 62.966 68.421 14.02 0.00 32.91 3.16
5411 5567 3.863424 TCTAGAAATGAATTCGGCGTGAC 59.137 43.478 6.85 0.00 43.15 3.67
5440 5596 4.012374 GGACAGACATGAATGTGGAATGT 58.988 43.478 11.39 0.97 41.95 2.71
5505 5662 1.334160 TACACGGCTCTGAACTTCCA 58.666 50.000 0.00 0.00 0.00 3.53
5528 5685 1.394917 GTTATTGGACAGCTGCGACAG 59.605 52.381 15.27 2.92 34.12 3.51
5529 5686 0.608130 TATTGGACAGCTGCGACAGT 59.392 50.000 15.27 9.68 33.43 3.55
5534 5691 1.964290 GACAGCTGCGACAGTGATGC 61.964 60.000 15.27 0.10 33.43 3.91
5551 6839 0.742505 TGCGGTATTCTCTACACCCG 59.257 55.000 0.00 0.00 38.45 5.28
5603 6895 5.772825 TTTTTGCATATAGCTTAGCCCTG 57.227 39.130 0.00 0.00 45.94 4.45
5618 6910 2.014068 GCCCTGTCATCTGGTAGTTGC 61.014 57.143 0.00 0.00 0.00 4.17
5732 7024 1.959226 CCAGTTTACGCACGCACCT 60.959 57.895 0.00 0.00 0.00 4.00
5788 7088 6.571150 GCATGGTATGAGCAAGTTTCTTTCTT 60.571 38.462 0.00 0.00 0.00 2.52
5789 7089 7.362056 GCATGGTATGAGCAAGTTTCTTTCTTA 60.362 37.037 0.00 0.00 0.00 2.10
5790 7090 7.435068 TGGTATGAGCAAGTTTCTTTCTTAC 57.565 36.000 0.00 0.00 0.00 2.34
5843 7145 0.922560 CACGTACGACCGTCGCATAG 60.923 60.000 24.41 11.86 45.12 2.23
5870 7172 5.068855 ACATCAACATCGTCTCATCTCATCT 59.931 40.000 0.00 0.00 0.00 2.90
5871 7173 5.180367 TCAACATCGTCTCATCTCATCTC 57.820 43.478 0.00 0.00 0.00 2.75
5872 7174 4.641989 TCAACATCGTCTCATCTCATCTCA 59.358 41.667 0.00 0.00 0.00 3.27
5873 7175 5.301298 TCAACATCGTCTCATCTCATCTCAT 59.699 40.000 0.00 0.00 0.00 2.90
5874 7176 5.375417 ACATCGTCTCATCTCATCTCATC 57.625 43.478 0.00 0.00 0.00 2.92
5886 7188 0.982852 ATCTCATCCCCGAAGTGGCA 60.983 55.000 0.00 0.00 35.87 4.92
5903 7205 3.796178 GTGGCAAAGTGTTTGTGTATGTG 59.204 43.478 0.00 0.00 42.56 3.21
6025 7330 2.612471 CGCCTCTTCATCATCATCCTCC 60.612 54.545 0.00 0.00 0.00 4.30
6097 7402 6.005066 TCTTCTGCAATATCAGATGGGAAA 57.995 37.500 0.00 0.00 42.12 3.13
6151 7482 6.651975 AGAAGAAGAAGAAGAAGTACCGAA 57.348 37.500 0.00 0.00 0.00 4.30
6259 7590 1.681076 GTTGACGGGGGCCTTCTTA 59.319 57.895 0.84 0.00 0.00 2.10
6365 7696 3.474570 GGCCAGCCTCCGTCTGAT 61.475 66.667 0.00 0.00 33.54 2.90
6383 7714 6.917477 CGTCTGATCCATTTTCTTGTTTCAAA 59.083 34.615 0.00 0.00 0.00 2.69
6384 7715 7.596248 CGTCTGATCCATTTTCTTGTTTCAAAT 59.404 33.333 0.00 0.00 0.00 2.32
6385 7716 8.706035 GTCTGATCCATTTTCTTGTTTCAAATG 58.294 33.333 0.00 0.00 37.55 2.32
6386 7717 7.385752 TCTGATCCATTTTCTTGTTTCAAATGC 59.614 33.333 0.00 0.00 36.82 3.56
6387 7718 6.990939 TGATCCATTTTCTTGTTTCAAATGCA 59.009 30.769 0.00 0.00 36.82 3.96
6388 7719 7.662258 TGATCCATTTTCTTGTTTCAAATGCAT 59.338 29.630 0.00 0.00 36.82 3.96
6389 7720 7.424227 TCCATTTTCTTGTTTCAAATGCATC 57.576 32.000 0.00 0.00 36.82 3.91
6390 7721 6.990939 TCCATTTTCTTGTTTCAAATGCATCA 59.009 30.769 0.00 0.00 36.82 3.07
6391 7722 7.662258 TCCATTTTCTTGTTTCAAATGCATCAT 59.338 29.630 0.00 0.00 36.82 2.45
6392 7723 7.960738 CCATTTTCTTGTTTCAAATGCATCATC 59.039 33.333 0.00 0.00 36.82 2.92
6393 7724 8.499967 CATTTTCTTGTTTCAAATGCATCATCA 58.500 29.630 0.00 0.00 32.62 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.588719 AATAGAGTAGCAAATTGTTTGGCA 57.411 33.333 4.77 0.00 40.94 4.92
1 2 7.148590 CCAAAATAGAGTAGCAAATTGTTTGGC 60.149 37.037 6.18 0.00 40.94 4.52
2 3 7.872483 ACCAAAATAGAGTAGCAAATTGTTTGG 59.128 33.333 13.70 13.70 44.31 3.28
3 4 8.816640 ACCAAAATAGAGTAGCAAATTGTTTG 57.183 30.769 0.00 0.00 43.44 2.93
4 5 8.637986 TGACCAAAATAGAGTAGCAAATTGTTT 58.362 29.630 0.00 0.00 0.00 2.83
5 6 8.082242 GTGACCAAAATAGAGTAGCAAATTGTT 58.918 33.333 0.00 0.00 0.00 2.83
6 7 7.573096 CGTGACCAAAATAGAGTAGCAAATTGT 60.573 37.037 0.00 0.00 0.00 2.71
7 8 6.742718 CGTGACCAAAATAGAGTAGCAAATTG 59.257 38.462 0.00 0.00 0.00 2.32
8 9 6.128007 CCGTGACCAAAATAGAGTAGCAAATT 60.128 38.462 0.00 0.00 0.00 1.82
9 10 5.354234 CCGTGACCAAAATAGAGTAGCAAAT 59.646 40.000 0.00 0.00 0.00 2.32
10 11 4.693566 CCGTGACCAAAATAGAGTAGCAAA 59.306 41.667 0.00 0.00 0.00 3.68
11 12 4.250464 CCGTGACCAAAATAGAGTAGCAA 58.750 43.478 0.00 0.00 0.00 3.91
12 13 3.259876 ACCGTGACCAAAATAGAGTAGCA 59.740 43.478 0.00 0.00 0.00 3.49
13 14 3.617263 CACCGTGACCAAAATAGAGTAGC 59.383 47.826 0.00 0.00 0.00 3.58
14 15 4.817517 ACACCGTGACCAAAATAGAGTAG 58.182 43.478 5.28 0.00 0.00 2.57
15 16 4.877378 ACACCGTGACCAAAATAGAGTA 57.123 40.909 5.28 0.00 0.00 2.59
16 17 3.764237 ACACCGTGACCAAAATAGAGT 57.236 42.857 5.28 0.00 0.00 3.24
17 18 6.737254 AATTACACCGTGACCAAAATAGAG 57.263 37.500 5.28 0.00 0.00 2.43
18 19 8.670135 CATAAATTACACCGTGACCAAAATAGA 58.330 33.333 5.28 0.00 0.00 1.98
19 20 8.455682 ACATAAATTACACCGTGACCAAAATAG 58.544 33.333 5.28 0.00 0.00 1.73
20 21 8.237949 CACATAAATTACACCGTGACCAAAATA 58.762 33.333 5.28 0.00 0.00 1.40
21 22 7.087639 CACATAAATTACACCGTGACCAAAAT 58.912 34.615 5.28 0.00 0.00 1.82
22 23 6.439599 CACATAAATTACACCGTGACCAAAA 58.560 36.000 5.28 0.00 0.00 2.44
23 24 5.048643 CCACATAAATTACACCGTGACCAAA 60.049 40.000 5.28 0.00 0.00 3.28
24 25 4.456222 CCACATAAATTACACCGTGACCAA 59.544 41.667 5.28 0.00 0.00 3.67
25 26 4.004314 CCACATAAATTACACCGTGACCA 58.996 43.478 5.28 0.00 0.00 4.02
26 27 4.255301 TCCACATAAATTACACCGTGACC 58.745 43.478 5.28 0.00 0.00 4.02
27 28 5.179742 TGTTCCACATAAATTACACCGTGAC 59.820 40.000 5.28 0.00 0.00 3.67
28 29 5.306394 TGTTCCACATAAATTACACCGTGA 58.694 37.500 5.28 0.00 0.00 4.35
29 30 5.614923 TGTTCCACATAAATTACACCGTG 57.385 39.130 0.00 0.00 0.00 4.94
30 31 5.335348 GCTTGTTCCACATAAATTACACCGT 60.335 40.000 0.00 0.00 0.00 4.83
31 32 5.092781 GCTTGTTCCACATAAATTACACCG 58.907 41.667 0.00 0.00 0.00 4.94
32 33 6.267496 AGCTTGTTCCACATAAATTACACC 57.733 37.500 0.00 0.00 0.00 4.16
33 34 6.151144 AGGAGCTTGTTCCACATAAATTACAC 59.849 38.462 6.30 0.00 39.84 2.90
34 35 6.245408 AGGAGCTTGTTCCACATAAATTACA 58.755 36.000 6.30 0.00 39.84 2.41
35 36 6.759497 AGGAGCTTGTTCCACATAAATTAC 57.241 37.500 6.30 0.00 39.84 1.89
36 37 9.120538 GATAAGGAGCTTGTTCCACATAAATTA 57.879 33.333 6.30 0.00 39.84 1.40
37 38 7.615365 TGATAAGGAGCTTGTTCCACATAAATT 59.385 33.333 6.30 0.00 39.84 1.82
38 39 7.118723 TGATAAGGAGCTTGTTCCACATAAAT 58.881 34.615 6.30 0.00 39.84 1.40
39 40 6.480763 TGATAAGGAGCTTGTTCCACATAAA 58.519 36.000 6.30 0.00 39.84 1.40
40 41 6.061022 TGATAAGGAGCTTGTTCCACATAA 57.939 37.500 6.30 0.00 39.84 1.90
41 42 5.692115 TGATAAGGAGCTTGTTCCACATA 57.308 39.130 6.30 0.00 39.84 2.29
42 43 4.574674 TGATAAGGAGCTTGTTCCACAT 57.425 40.909 6.30 0.00 39.84 3.21
43 44 4.072131 GTTGATAAGGAGCTTGTTCCACA 58.928 43.478 6.30 0.00 39.84 4.17
44 45 3.440522 GGTTGATAAGGAGCTTGTTCCAC 59.559 47.826 6.30 0.00 39.84 4.02
45 46 3.073798 TGGTTGATAAGGAGCTTGTTCCA 59.926 43.478 6.30 0.00 39.84 3.53
46 47 3.686016 TGGTTGATAAGGAGCTTGTTCC 58.314 45.455 0.00 0.00 37.52 3.62
47 48 4.943705 TGATGGTTGATAAGGAGCTTGTTC 59.056 41.667 0.00 0.00 0.00 3.18
48 49 4.922206 TGATGGTTGATAAGGAGCTTGTT 58.078 39.130 0.00 0.00 0.00 2.83
49 50 4.574674 TGATGGTTGATAAGGAGCTTGT 57.425 40.909 0.00 0.00 0.00 3.16
50 51 5.065731 GTCTTGATGGTTGATAAGGAGCTTG 59.934 44.000 0.00 0.00 0.00 4.01
51 52 5.045286 AGTCTTGATGGTTGATAAGGAGCTT 60.045 40.000 0.00 0.00 0.00 3.74
52 53 4.472833 AGTCTTGATGGTTGATAAGGAGCT 59.527 41.667 0.00 0.00 0.00 4.09
53 54 4.775236 AGTCTTGATGGTTGATAAGGAGC 58.225 43.478 0.00 0.00 0.00 4.70
54 55 8.792830 TTAAAGTCTTGATGGTTGATAAGGAG 57.207 34.615 0.00 0.00 0.00 3.69
55 56 9.396022 GATTAAAGTCTTGATGGTTGATAAGGA 57.604 33.333 0.00 0.00 0.00 3.36
56 57 8.624776 GGATTAAAGTCTTGATGGTTGATAAGG 58.375 37.037 0.00 0.00 0.00 2.69
57 58 8.624776 GGGATTAAAGTCTTGATGGTTGATAAG 58.375 37.037 0.00 0.00 0.00 1.73
58 59 7.559897 GGGGATTAAAGTCTTGATGGTTGATAA 59.440 37.037 0.00 0.00 0.00 1.75
59 60 7.060421 GGGGATTAAAGTCTTGATGGTTGATA 58.940 38.462 0.00 0.00 0.00 2.15
60 61 5.893824 GGGGATTAAAGTCTTGATGGTTGAT 59.106 40.000 0.00 0.00 0.00 2.57
61 62 5.222233 TGGGGATTAAAGTCTTGATGGTTGA 60.222 40.000 0.00 0.00 0.00 3.18
62 63 5.016173 TGGGGATTAAAGTCTTGATGGTTG 58.984 41.667 0.00 0.00 0.00 3.77
63 64 5.269554 TGGGGATTAAAGTCTTGATGGTT 57.730 39.130 0.00 0.00 0.00 3.67
64 65 4.946160 TGGGGATTAAAGTCTTGATGGT 57.054 40.909 0.00 0.00 0.00 3.55
65 66 5.394553 GCTTTGGGGATTAAAGTCTTGATGG 60.395 44.000 0.00 0.00 37.44 3.51
66 67 5.394553 GGCTTTGGGGATTAAAGTCTTGATG 60.395 44.000 0.00 0.00 36.93 3.07
67 68 4.711846 GGCTTTGGGGATTAAAGTCTTGAT 59.288 41.667 0.00 0.00 36.93 2.57
68 69 4.086457 GGCTTTGGGGATTAAAGTCTTGA 58.914 43.478 0.00 0.00 36.93 3.02
69 70 3.831911 TGGCTTTGGGGATTAAAGTCTTG 59.168 43.478 0.00 0.00 39.74 3.02
70 71 4.126520 TGGCTTTGGGGATTAAAGTCTT 57.873 40.909 0.00 0.00 39.74 3.01
71 72 3.825908 TGGCTTTGGGGATTAAAGTCT 57.174 42.857 0.00 0.00 39.74 3.24
72 73 4.882842 TTTGGCTTTGGGGATTAAAGTC 57.117 40.909 0.00 0.00 39.53 3.01
73 74 4.843516 TCATTTGGCTTTGGGGATTAAAGT 59.156 37.500 0.00 0.00 37.44 2.66
74 75 5.419239 TCATTTGGCTTTGGGGATTAAAG 57.581 39.130 0.00 0.00 38.00 1.85
75 76 7.688918 ATATCATTTGGCTTTGGGGATTAAA 57.311 32.000 0.00 0.00 0.00 1.52
76 77 8.971032 ATATATCATTTGGCTTTGGGGATTAA 57.029 30.769 0.00 0.00 0.00 1.40
115 116 8.920665 CGTGAATTTATTTTAGTTTGGCAATGA 58.079 29.630 0.00 0.00 0.00 2.57
116 117 8.167985 CCGTGAATTTATTTTAGTTTGGCAATG 58.832 33.333 0.00 0.00 0.00 2.82
117 118 7.875554 ACCGTGAATTTATTTTAGTTTGGCAAT 59.124 29.630 0.00 0.00 0.00 3.56
118 119 7.210873 ACCGTGAATTTATTTTAGTTTGGCAA 58.789 30.769 0.00 0.00 0.00 4.52
119 120 6.750148 ACCGTGAATTTATTTTAGTTTGGCA 58.250 32.000 0.00 0.00 0.00 4.92
120 121 7.646446 AACCGTGAATTTATTTTAGTTTGGC 57.354 32.000 0.00 0.00 0.00 4.52
133 134 9.857957 TTCAAAAGTTAAGTAAACCGTGAATTT 57.142 25.926 0.00 0.00 39.03 1.82
134 135 9.857957 TTTCAAAAGTTAAGTAAACCGTGAATT 57.142 25.926 0.00 0.00 39.03 2.17
136 137 9.291664 CATTTCAAAAGTTAAGTAAACCGTGAA 57.708 29.630 0.00 0.00 39.03 3.18
137 138 8.460428 ACATTTCAAAAGTTAAGTAAACCGTGA 58.540 29.630 0.00 0.00 39.03 4.35
138 139 8.528295 CACATTTCAAAAGTTAAGTAAACCGTG 58.472 33.333 0.00 0.00 39.03 4.94
139 140 7.221259 GCACATTTCAAAAGTTAAGTAAACCGT 59.779 33.333 0.00 0.00 39.03 4.83
140 141 7.221067 TGCACATTTCAAAAGTTAAGTAAACCG 59.779 33.333 0.00 0.00 39.03 4.44
141 142 8.413899 TGCACATTTCAAAAGTTAAGTAAACC 57.586 30.769 0.00 0.00 39.03 3.27
142 143 9.848172 CATGCACATTTCAAAAGTTAAGTAAAC 57.152 29.630 0.00 0.00 38.46 2.01
143 144 9.039870 CCATGCACATTTCAAAAGTTAAGTAAA 57.960 29.630 0.00 0.00 0.00 2.01
144 145 8.200792 ACCATGCACATTTCAAAAGTTAAGTAA 58.799 29.630 0.00 0.00 0.00 2.24
145 146 7.651304 CACCATGCACATTTCAAAAGTTAAGTA 59.349 33.333 0.00 0.00 0.00 2.24
146 147 6.479660 CACCATGCACATTTCAAAAGTTAAGT 59.520 34.615 0.00 0.00 0.00 2.24
147 148 6.073657 CCACCATGCACATTTCAAAAGTTAAG 60.074 38.462 0.00 0.00 0.00 1.85
148 149 5.757320 CCACCATGCACATTTCAAAAGTTAA 59.243 36.000 0.00 0.00 0.00 2.01
149 150 5.295950 CCACCATGCACATTTCAAAAGTTA 58.704 37.500 0.00 0.00 0.00 2.24
150 151 4.128643 CCACCATGCACATTTCAAAAGTT 58.871 39.130 0.00 0.00 0.00 2.66
151 152 3.731089 CCACCATGCACATTTCAAAAGT 58.269 40.909 0.00 0.00 0.00 2.66
152 153 2.481185 GCCACCATGCACATTTCAAAAG 59.519 45.455 0.00 0.00 0.00 2.27
153 154 2.492012 GCCACCATGCACATTTCAAAA 58.508 42.857 0.00 0.00 0.00 2.44
154 155 1.270732 GGCCACCATGCACATTTCAAA 60.271 47.619 0.00 0.00 0.00 2.69
155 156 0.321021 GGCCACCATGCACATTTCAA 59.679 50.000 0.00 0.00 0.00 2.69
156 157 0.542467 AGGCCACCATGCACATTTCA 60.542 50.000 5.01 0.00 0.00 2.69
157 158 0.174162 GAGGCCACCATGCACATTTC 59.826 55.000 5.01 0.00 0.00 2.17
158 159 1.259840 GGAGGCCACCATGCACATTT 61.260 55.000 15.24 0.00 0.00 2.32
159 160 1.683365 GGAGGCCACCATGCACATT 60.683 57.895 15.24 0.00 0.00 2.71
160 161 2.043652 GGAGGCCACCATGCACAT 60.044 61.111 15.24 0.00 0.00 3.21
161 162 3.259314 AGGAGGCCACCATGCACA 61.259 61.111 22.29 0.00 0.00 4.57
162 163 2.439156 GAGGAGGCCACCATGCAC 60.439 66.667 22.29 3.57 0.00 4.57
163 164 3.731728 GGAGGAGGCCACCATGCA 61.732 66.667 22.29 0.00 34.35 3.96
164 165 3.412624 GAGGAGGAGGCCACCATGC 62.413 68.421 22.29 11.48 36.71 4.06
165 166 2.750657 GGAGGAGGAGGCCACCATG 61.751 68.421 22.29 0.00 38.42 3.66
166 167 2.367512 GGAGGAGGAGGCCACCAT 60.368 66.667 22.29 6.65 38.42 3.55
167 168 3.615811 AGGAGGAGGAGGCCACCA 61.616 66.667 22.29 0.00 40.71 4.17
168 169 2.766229 GAGGAGGAGGAGGCCACC 60.766 72.222 11.96 11.96 38.78 4.61
169 170 2.766229 GGAGGAGGAGGAGGCCAC 60.766 72.222 5.01 0.00 0.00 5.01
170 171 2.829639 CTTGGAGGAGGAGGAGGCCA 62.830 65.000 5.01 0.00 0.00 5.36
171 172 2.041265 TTGGAGGAGGAGGAGGCC 59.959 66.667 0.00 0.00 0.00 5.19
172 173 0.618968 TTCTTGGAGGAGGAGGAGGC 60.619 60.000 0.00 0.00 0.00 4.70
330 334 1.347707 TGAGCAGGACACAAACCCTAG 59.652 52.381 0.00 0.00 0.00 3.02
502 512 3.554129 CCGAAGACACACCAATGTAGACA 60.554 47.826 0.00 0.00 36.72 3.41
512 522 1.804748 GATCCAAACCGAAGACACACC 59.195 52.381 0.00 0.00 0.00 4.16
540 550 5.418310 ACGCCGATGAAAAATAACATAGG 57.582 39.130 0.00 0.00 40.48 2.57
544 554 2.737783 ACGACGCCGATGAAAAATAACA 59.262 40.909 0.00 0.00 39.50 2.41
562 572 1.890041 CACCCGGAACAGCAAACGA 60.890 57.895 0.73 0.00 0.00 3.85
565 575 0.605319 CTAGCACCCGGAACAGCAAA 60.605 55.000 0.73 0.00 0.00 3.68
575 585 0.962489 CCTCATAGGACTAGCACCCG 59.038 60.000 3.36 0.00 37.67 5.28
628 640 1.228657 GGAGTCGGGCACAACTTGTC 61.229 60.000 0.00 0.00 0.00 3.18
695 707 2.159282 CCACCTAGCGACGACTACAAAT 60.159 50.000 0.00 0.00 0.00 2.32
802 820 1.747367 CCGCCACCTTCCGCATTTA 60.747 57.895 0.00 0.00 0.00 1.40
808 826 2.511600 CTTAGCCGCCACCTTCCG 60.512 66.667 0.00 0.00 0.00 4.30
809 827 1.968050 TAGCTTAGCCGCCACCTTCC 61.968 60.000 0.00 0.00 0.00 3.46
810 828 0.810426 GTAGCTTAGCCGCCACCTTC 60.810 60.000 0.00 0.00 0.00 3.46
811 829 1.221021 GTAGCTTAGCCGCCACCTT 59.779 57.895 0.00 0.00 0.00 3.50
812 830 1.961180 CTGTAGCTTAGCCGCCACCT 61.961 60.000 0.00 0.00 0.00 4.00
847 865 0.972883 ACCTCTTGTCAGTCCTCTGC 59.027 55.000 0.00 0.00 41.10 4.26
1156 1205 4.729918 CCACCCCAGGCTGCTGTC 62.730 72.222 9.56 0.00 0.00 3.51
1366 1415 2.036733 CGTGGGAGTTCTACTTGTCCAA 59.963 50.000 0.00 0.00 29.66 3.53
1384 1433 3.722147 CCCCTGAACTGATATTCTCGTG 58.278 50.000 0.00 0.00 0.00 4.35
1391 1440 1.133668 GGCAAGCCCCTGAACTGATAT 60.134 52.381 0.00 0.00 0.00 1.63
1392 1441 0.255890 GGCAAGCCCCTGAACTGATA 59.744 55.000 0.00 0.00 0.00 2.15
1395 1444 2.437897 AGGCAAGCCCCTGAACTG 59.562 61.111 7.62 0.00 36.58 3.16
1413 1464 1.003839 TGGACTTGGCGTGATCCAC 60.004 57.895 0.00 0.00 36.30 4.02
1415 1466 2.109126 GCTGGACTTGGCGTGATCC 61.109 63.158 0.00 0.00 0.00 3.36
1441 1516 0.247736 AGCCTTCACGGATCACAGAC 59.752 55.000 0.00 0.00 33.16 3.51
1463 1538 3.187022 TCGATGTCACATTGTTTCAGCAG 59.813 43.478 4.86 0.00 0.00 4.24
1470 1545 3.057526 TCGAGTCTCGATGTCACATTGTT 60.058 43.478 20.85 0.00 44.82 2.83
1471 1546 2.488153 TCGAGTCTCGATGTCACATTGT 59.512 45.455 20.85 0.00 44.82 2.71
1472 1547 3.136808 TCGAGTCTCGATGTCACATTG 57.863 47.619 20.85 0.00 44.82 2.82
1510 1587 2.745821 ACACTGCTGCAGTCATACAATG 59.254 45.455 30.96 19.40 43.43 2.82
1519 1596 0.947244 GCTAACAACACTGCTGCAGT 59.053 50.000 28.49 28.49 46.51 4.40
1532 1609 0.402504 AAACGGGGGATGTGCTAACA 59.597 50.000 0.00 0.00 41.58 2.41
1543 1620 0.678950 AATGCAACAGAAAACGGGGG 59.321 50.000 0.00 0.00 0.00 5.40
1552 1629 5.185442 TGCAAAATATCTGGAATGCAACAGA 59.815 36.000 17.73 17.73 46.62 3.41
1555 1632 5.170021 TGTGCAAAATATCTGGAATGCAAC 58.830 37.500 0.00 0.00 44.39 4.17
1561 1638 5.586243 GTCTAGCTGTGCAAAATATCTGGAA 59.414 40.000 0.00 0.00 0.00 3.53
1634 1711 3.055530 ACTCTGAGTAGGCATGACAAAGG 60.056 47.826 8.91 0.00 0.00 3.11
1645 1722 7.285629 TCAACTGTATCCATAACTCTGAGTAGG 59.714 40.741 11.30 13.16 0.00 3.18
1686 1763 6.352222 CCACAACTCTGGAACCATATTCTAGT 60.352 42.308 0.00 0.00 32.30 2.57
1790 1867 4.275810 AGCATTACAGCATCTGATTTGGT 58.724 39.130 0.29 0.00 35.18 3.67
1802 1881 1.141657 TCCTGGATGGAGCATTACAGC 59.858 52.381 0.00 0.00 40.56 4.40
1893 1985 5.571741 CGAACTAGTTGTGTTCATATGACGT 59.428 40.000 14.14 0.00 42.63 4.34
1895 1987 6.807230 AGTCGAACTAGTTGTGTTCATATGAC 59.193 38.462 14.14 1.77 42.63 3.06
1916 2012 8.947115 TCACCACAGACATAGATAATATAGTCG 58.053 37.037 0.00 0.00 0.00 4.18
1921 2017 9.935241 GTCATTCACCACAGACATAGATAATAT 57.065 33.333 0.00 0.00 0.00 1.28
1994 2090 2.811431 ACACACAAATATGTCCACACCG 59.189 45.455 0.00 0.00 37.82 4.94
2087 2183 0.973632 TGTTTAGCTTCTCTGGCGGA 59.026 50.000 0.00 0.00 34.52 5.54
2218 2314 1.764571 AAAGTAGGCCGCTGGTGACA 61.765 55.000 0.00 0.00 39.59 3.58
2246 2342 1.142465 CAAGCATCATGAGGGGTAGCT 59.858 52.381 9.76 4.82 0.00 3.32
2306 2402 6.242508 CATCATGATAGATGCAGAACAAGG 57.757 41.667 8.15 0.00 38.98 3.61
2324 2420 9.745880 CTTTTGAGATAAGCTAAATTGCATCAT 57.254 29.630 0.00 0.00 34.99 2.45
2361 2457 6.570672 AAATATTGTATCAGGCTGCATCAG 57.429 37.500 10.34 0.00 34.12 2.90
2370 2466 7.604164 CCTAGCACCAGTAAATATTGTATCAGG 59.396 40.741 0.00 0.00 0.00 3.86
2428 2524 4.799564 AACAATGTGTTGGTTTCACAGT 57.200 36.364 5.11 0.00 46.54 3.55
2509 2617 4.816925 GGAATCTTGCCTGAATGTACTACC 59.183 45.833 0.00 0.00 0.00 3.18
2568 2676 6.549736 TCCAGAAGTTATCGTCTCATTCCATA 59.450 38.462 0.00 0.00 30.55 2.74
2704 2812 3.504520 ACACGAGTTGGTTTTCACACTTT 59.495 39.130 0.00 0.00 0.00 2.66
2828 2936 6.274908 ACTTATTTTGGAAAGGAGGGAGTACT 59.725 38.462 0.00 0.00 0.00 2.73
2829 2937 6.374613 CACTTATTTTGGAAAGGAGGGAGTAC 59.625 42.308 0.00 0.00 0.00 2.73
2830 2938 6.045106 ACACTTATTTTGGAAAGGAGGGAGTA 59.955 38.462 0.00 0.00 0.00 2.59
2831 2939 5.162980 ACACTTATTTTGGAAAGGAGGGAGT 60.163 40.000 0.00 0.00 0.00 3.85
2832 2940 5.325239 ACACTTATTTTGGAAAGGAGGGAG 58.675 41.667 0.00 0.00 0.00 4.30
2833 2941 5.074515 AGACACTTATTTTGGAAAGGAGGGA 59.925 40.000 0.00 0.00 0.00 4.20
2834 2942 5.325239 AGACACTTATTTTGGAAAGGAGGG 58.675 41.667 0.00 0.00 0.00 4.30
2835 2943 6.003950 TGAGACACTTATTTTGGAAAGGAGG 58.996 40.000 0.00 0.00 0.00 4.30
2836 2944 7.229506 AGTTGAGACACTTATTTTGGAAAGGAG 59.770 37.037 0.00 0.00 0.00 3.69
2837 2945 7.060421 AGTTGAGACACTTATTTTGGAAAGGA 58.940 34.615 0.00 0.00 0.00 3.36
2838 2946 7.229506 AGAGTTGAGACACTTATTTTGGAAAGG 59.770 37.037 0.00 0.00 0.00 3.11
2839 2947 8.072567 CAGAGTTGAGACACTTATTTTGGAAAG 58.927 37.037 0.00 0.00 0.00 2.62
2840 2948 7.013274 CCAGAGTTGAGACACTTATTTTGGAAA 59.987 37.037 0.00 0.00 0.00 3.13
2841 2949 6.486657 CCAGAGTTGAGACACTTATTTTGGAA 59.513 38.462 0.00 0.00 0.00 3.53
2842 2950 5.997746 CCAGAGTTGAGACACTTATTTTGGA 59.002 40.000 0.00 0.00 0.00 3.53
2843 2951 5.765182 ACCAGAGTTGAGACACTTATTTTGG 59.235 40.000 0.00 0.00 0.00 3.28
2844 2952 6.867662 ACCAGAGTTGAGACACTTATTTTG 57.132 37.500 0.00 0.00 0.00 2.44
2845 2953 7.506114 TGTACCAGAGTTGAGACACTTATTTT 58.494 34.615 0.00 0.00 0.00 1.82
2846 2954 7.062749 TGTACCAGAGTTGAGACACTTATTT 57.937 36.000 0.00 0.00 0.00 1.40
2847 2955 6.665992 TGTACCAGAGTTGAGACACTTATT 57.334 37.500 0.00 0.00 0.00 1.40
2848 2956 6.267928 AGTTGTACCAGAGTTGAGACACTTAT 59.732 38.462 0.00 0.00 0.00 1.73
2849 2957 5.597182 AGTTGTACCAGAGTTGAGACACTTA 59.403 40.000 0.00 0.00 0.00 2.24
2850 2958 4.406003 AGTTGTACCAGAGTTGAGACACTT 59.594 41.667 0.00 0.00 0.00 3.16
2851 2959 3.961408 AGTTGTACCAGAGTTGAGACACT 59.039 43.478 0.00 0.00 0.00 3.55
2852 2960 4.323553 AGTTGTACCAGAGTTGAGACAC 57.676 45.455 0.00 0.00 0.00 3.67
2853 2961 5.116180 CAAAGTTGTACCAGAGTTGAGACA 58.884 41.667 0.00 0.00 0.00 3.41
2854 2962 5.116882 ACAAAGTTGTACCAGAGTTGAGAC 58.883 41.667 0.00 0.00 40.16 3.36
2855 2963 5.353394 ACAAAGTTGTACCAGAGTTGAGA 57.647 39.130 0.00 0.00 40.16 3.27
2892 3000 6.238648 CGTCCCAAAGTAAATGTCTCAACTTT 60.239 38.462 0.00 0.00 41.56 2.66
2893 3001 5.238650 CGTCCCAAAGTAAATGTCTCAACTT 59.761 40.000 0.00 0.00 33.72 2.66
2894 3002 4.755123 CGTCCCAAAGTAAATGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2895 3003 4.083484 CCGTCCCAAAGTAAATGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2896 3004 4.069304 CCGTCCCAAAGTAAATGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2897 3005 3.325425 TCCGTCCCAAAGTAAATGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2898 3006 3.933332 CTCCGTCCCAAAGTAAATGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2899 3007 3.307480 CCTCCGTCCCAAAGTAAATGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2900 3008 3.007635 CCTCCGTCCCAAAGTAAATGTC 58.992 50.000 0.00 0.00 0.00 3.06
2901 3009 2.290705 CCCTCCGTCCCAAAGTAAATGT 60.291 50.000 0.00 0.00 0.00 2.71
2902 3010 2.026636 TCCCTCCGTCCCAAAGTAAATG 60.027 50.000 0.00 0.00 0.00 2.32
2903 3011 2.238898 CTCCCTCCGTCCCAAAGTAAAT 59.761 50.000 0.00 0.00 0.00 1.40
2904 3012 1.626825 CTCCCTCCGTCCCAAAGTAAA 59.373 52.381 0.00 0.00 0.00 2.01
2905 3013 1.272807 CTCCCTCCGTCCCAAAGTAA 58.727 55.000 0.00 0.00 0.00 2.24
2906 3014 0.115745 ACTCCCTCCGTCCCAAAGTA 59.884 55.000 0.00 0.00 0.00 2.24
2907 3015 0.115745 TACTCCCTCCGTCCCAAAGT 59.884 55.000 0.00 0.00 0.00 2.66
2908 3016 0.824759 CTACTCCCTCCGTCCCAAAG 59.175 60.000 0.00 0.00 0.00 2.77
2909 3017 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2910 3018 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2911 3019 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2912 3020 0.467106 GGTACTACTCCCTCCGTCCC 60.467 65.000 0.00 0.00 0.00 4.46
2913 3021 0.550432 AGGTACTACTCCCTCCGTCC 59.450 60.000 0.00 0.00 36.02 4.79
2936 3044 9.147732 TGAGACAGATTGCCTAGAATTATTCTA 57.852 33.333 13.30 13.30 41.14 2.10
3072 3214 5.893512 TTAATTTGCACCGCTATACTACG 57.106 39.130 0.00 0.00 0.00 3.51
3074 3216 7.170828 CACTGATTAATTTGCACCGCTATACTA 59.829 37.037 0.00 0.00 0.00 1.82
3339 3484 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
3341 3486 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3342 3487 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3343 3488 2.605257 CTACATTATGGGACGGAGGGA 58.395 52.381 0.00 0.00 0.00 4.20
3344 3489 1.623811 CCTACATTATGGGACGGAGGG 59.376 57.143 0.00 0.00 0.00 4.30
3345 3490 2.605257 TCCTACATTATGGGACGGAGG 58.395 52.381 0.00 0.00 31.72 4.30
3369 3514 5.856156 TCCGTCCTACATTAGTGTCAAAAA 58.144 37.500 0.00 0.00 39.77 1.94
3370 3515 5.471556 TCCGTCCTACATTAGTGTCAAAA 57.528 39.130 0.00 0.00 39.77 2.44
3371 3516 4.081862 CCTCCGTCCTACATTAGTGTCAAA 60.082 45.833 0.00 0.00 39.77 2.69
3372 3517 3.446161 CCTCCGTCCTACATTAGTGTCAA 59.554 47.826 0.00 0.00 39.77 3.18
3373 3518 3.021695 CCTCCGTCCTACATTAGTGTCA 58.978 50.000 0.00 0.00 39.77 3.58
3374 3519 2.361438 CCCTCCGTCCTACATTAGTGTC 59.639 54.545 0.00 0.00 39.77 3.67
3375 3520 2.024655 TCCCTCCGTCCTACATTAGTGT 60.025 50.000 0.00 0.00 42.39 3.55
3376 3521 2.623889 CTCCCTCCGTCCTACATTAGTG 59.376 54.545 0.00 0.00 0.00 2.74
3377 3522 2.424523 CCTCCCTCCGTCCTACATTAGT 60.425 54.545 0.00 0.00 0.00 2.24
3378 3523 2.158505 TCCTCCCTCCGTCCTACATTAG 60.159 54.545 0.00 0.00 0.00 1.73
3379 3524 1.854939 TCCTCCCTCCGTCCTACATTA 59.145 52.381 0.00 0.00 0.00 1.90
3380 3525 0.635009 TCCTCCCTCCGTCCTACATT 59.365 55.000 0.00 0.00 0.00 2.71
3381 3526 0.186386 CTCCTCCCTCCGTCCTACAT 59.814 60.000 0.00 0.00 0.00 2.29
3382 3527 0.917821 TCTCCTCCCTCCGTCCTACA 60.918 60.000 0.00 0.00 0.00 2.74
3383 3528 0.258194 TTCTCCTCCCTCCGTCCTAC 59.742 60.000 0.00 0.00 0.00 3.18
3384 3529 1.232909 ATTCTCCTCCCTCCGTCCTA 58.767 55.000 0.00 0.00 0.00 2.94
3385 3530 0.340208 AATTCTCCTCCCTCCGTCCT 59.660 55.000 0.00 0.00 0.00 3.85
3386 3531 1.205055 AAATTCTCCTCCCTCCGTCC 58.795 55.000 0.00 0.00 0.00 4.79
3387 3532 3.898741 AGATAAATTCTCCTCCCTCCGTC 59.101 47.826 0.00 0.00 0.00 4.79
3388 3533 3.930035 AGATAAATTCTCCTCCCTCCGT 58.070 45.455 0.00 0.00 0.00 4.69
3389 3534 4.965200 AAGATAAATTCTCCTCCCTCCG 57.035 45.455 0.00 0.00 31.78 4.63
3390 3535 6.508030 AGAAAGATAAATTCTCCTCCCTCC 57.492 41.667 0.00 0.00 31.61 4.30
3391 3536 7.342581 ACAAGAAAGATAAATTCTCCTCCCTC 58.657 38.462 0.00 0.00 36.14 4.30
3392 3537 7.183657 AGACAAGAAAGATAAATTCTCCTCCCT 59.816 37.037 0.00 0.00 36.14 4.20
3393 3538 7.281999 CAGACAAGAAAGATAAATTCTCCTCCC 59.718 40.741 0.00 0.00 36.14 4.30
3394 3539 7.201688 GCAGACAAGAAAGATAAATTCTCCTCC 60.202 40.741 0.00 0.00 36.14 4.30
3395 3540 7.335422 TGCAGACAAGAAAGATAAATTCTCCTC 59.665 37.037 0.00 0.00 36.14 3.71
3396 3541 7.170965 TGCAGACAAGAAAGATAAATTCTCCT 58.829 34.615 0.00 0.00 36.14 3.69
3397 3542 7.383102 TGCAGACAAGAAAGATAAATTCTCC 57.617 36.000 0.00 0.00 36.14 3.71
3415 3560 4.936891 GGGATCACCAAAATTATGCAGAC 58.063 43.478 0.00 0.00 39.85 3.51
3480 3625 1.673920 TCAACTGCCTTCCGTTTGTTC 59.326 47.619 0.00 0.00 0.00 3.18
3522 3667 3.425404 GCGTGCCATATACACAAGTTTG 58.575 45.455 8.35 0.00 37.93 2.93
3852 3997 3.599730 TTGTGCACCACATTGTCAAAA 57.400 38.095 15.69 0.00 44.16 2.44
3960 4105 7.068348 AGTCTTAATTACAGCTTCGGACATAGA 59.932 37.037 0.00 0.00 0.00 1.98
4031 4176 0.032813 CCCCATCCATCCAAGCAAGT 60.033 55.000 0.00 0.00 0.00 3.16
4252 4397 8.335532 TGTTCATATTCAGGTTTGTAGAAAGG 57.664 34.615 0.00 0.00 0.00 3.11
4306 4451 9.445878 CATTGCTGAAGGATTGTCTGTATATAT 57.554 33.333 0.00 0.00 0.00 0.86
4317 4462 2.579207 CAGGCATTGCTGAAGGATTG 57.421 50.000 8.82 0.00 0.00 2.67
4328 4473 1.471119 AGAACATCCTGCAGGCATTG 58.529 50.000 28.91 24.45 34.44 2.82
4329 4474 2.097825 GAAGAACATCCTGCAGGCATT 58.902 47.619 28.91 20.32 34.44 3.56
4365 4511 6.582672 CGCGTCAATATGTGATCTGTATAACT 59.417 38.462 0.00 0.00 38.90 2.24
4370 4516 4.301637 ACGCGTCAATATGTGATCTGTA 57.698 40.909 5.58 0.00 38.90 2.74
4371 4517 3.165058 ACGCGTCAATATGTGATCTGT 57.835 42.857 5.58 0.00 38.90 3.41
4372 4518 4.201714 ACAAACGCGTCAATATGTGATCTG 60.202 41.667 14.44 0.00 38.90 2.90
4373 4519 3.932710 ACAAACGCGTCAATATGTGATCT 59.067 39.130 14.44 0.00 38.90 2.75
4374 4520 4.021822 CACAAACGCGTCAATATGTGATC 58.978 43.478 24.86 0.00 40.32 2.92
4375 4521 3.435327 ACACAAACGCGTCAATATGTGAT 59.565 39.130 30.63 19.70 40.32 3.06
4377 4523 3.181826 ACACAAACGCGTCAATATGTG 57.818 42.857 26.16 26.16 42.78 3.21
4379 4525 4.318071 CAGAAACACAAACGCGTCAATATG 59.682 41.667 14.44 9.77 0.00 1.78
4380 4526 4.212425 TCAGAAACACAAACGCGTCAATAT 59.788 37.500 14.44 0.00 0.00 1.28
4381 4527 3.556365 TCAGAAACACAAACGCGTCAATA 59.444 39.130 14.44 0.00 0.00 1.90
4387 4541 2.097925 GCAATTCAGAAACACAAACGCG 60.098 45.455 3.53 3.53 0.00 6.01
4389 4543 4.680934 CTGCAATTCAGAAACACAAACG 57.319 40.909 0.00 0.00 45.72 3.60
4449 4603 2.933906 GCATTGGATTTGCAATCCTGTG 59.066 45.455 21.12 19.29 39.90 3.66
4485 4639 2.097825 CTAGCCGGGTTGTAGTACACT 58.902 52.381 13.43 0.00 0.00 3.55
4527 4681 1.305886 TCTGGCCTAGTGAGGTAGGA 58.694 55.000 3.32 0.00 45.78 2.94
4716 4870 2.157738 CTGAGGAAGCAAAGTGAAGGG 58.842 52.381 0.00 0.00 0.00 3.95
4891 5046 1.202627 GGCTCCAGGAGTATGAAGCTG 60.203 57.143 18.37 0.00 31.39 4.24
5108 5263 0.619255 TGGGCCCGAACTCCATCTTA 60.619 55.000 19.37 0.00 0.00 2.10
5144 5299 0.663269 GCGCGATCGTGGTGATGATA 60.663 55.000 28.23 0.00 37.47 2.15
5411 5567 3.686241 ACATTCATGTCTGTCCATCGTTG 59.314 43.478 0.00 0.00 35.87 4.10
5418 5574 4.012374 ACATTCCACATTCATGTCTGTCC 58.988 43.478 0.00 0.00 39.39 4.02
5440 5596 2.373335 TAGCAAGGCTCAAACCCAAA 57.627 45.000 0.00 0.00 40.44 3.28
5505 5662 2.420022 GTCGCAGCTGTCCAATAACATT 59.580 45.455 16.64 0.00 0.00 2.71
5528 5685 3.381949 GGTGTAGAGAATACCGCATCAC 58.618 50.000 0.00 0.00 28.66 3.06
5529 5686 2.364324 GGGTGTAGAGAATACCGCATCA 59.636 50.000 0.00 0.00 40.21 3.07
5534 5691 2.032549 CGTACGGGTGTAGAGAATACCG 60.033 54.545 7.57 0.00 46.16 4.02
5551 6839 5.041287 TGCATCACTAGCTGTTAATCGTAC 58.959 41.667 0.00 0.00 0.00 3.67
5594 6882 3.034635 ACTACCAGATGACAGGGCTAAG 58.965 50.000 0.00 0.00 0.00 2.18
5603 6895 1.002366 CTGCGCAACTACCAGATGAC 58.998 55.000 13.05 0.00 0.00 3.06
5618 6910 3.925630 ATGTGGAACCTGCCCTGCG 62.926 63.158 0.00 0.00 34.36 5.18
5732 7024 4.040829 TCTTTCAGATGTTCTCAGCCTCAA 59.959 41.667 0.00 0.00 0.00 3.02
5788 7088 0.747852 TGATGTATGGCTTCCGCGTA 59.252 50.000 4.92 0.00 36.88 4.42
5789 7089 0.810031 GTGATGTATGGCTTCCGCGT 60.810 55.000 4.92 0.00 36.88 6.01
5790 7090 1.821241 CGTGATGTATGGCTTCCGCG 61.821 60.000 0.00 0.00 36.88 6.46
5843 7145 6.036470 TGAGATGAGACGATGTTGATGTAAC 58.964 40.000 0.00 0.00 39.80 2.50
5870 7172 0.322456 CTTTGCCACTTCGGGGATGA 60.322 55.000 0.00 0.00 34.06 2.92
5871 7173 0.609131 ACTTTGCCACTTCGGGGATG 60.609 55.000 0.00 0.00 34.06 3.51
5872 7174 0.609131 CACTTTGCCACTTCGGGGAT 60.609 55.000 0.00 0.00 34.06 3.85
5873 7175 1.228124 CACTTTGCCACTTCGGGGA 60.228 57.895 0.00 0.00 34.06 4.81
5874 7176 1.106944 AACACTTTGCCACTTCGGGG 61.107 55.000 0.00 0.00 34.06 5.73
5886 7188 4.829064 ATCGCACATACACAAACACTTT 57.171 36.364 0.00 0.00 0.00 2.66
5903 7205 9.821158 GTTTATAAACAAACGTACTACTATCGC 57.179 33.333 20.95 0.00 38.74 4.58
6005 7310 2.638855 AGGAGGATGATGATGAAGAGGC 59.361 50.000 0.00 0.00 0.00 4.70
6010 7315 2.977580 CCAGGAGGAGGATGATGATGAA 59.022 50.000 0.00 0.00 36.89 2.57
6025 7330 2.438075 GCAGCCTTGAGCCAGGAG 60.438 66.667 0.00 0.00 45.47 3.69
6151 7482 1.151450 CAACTCCAGGCCCAACACT 59.849 57.895 0.00 0.00 0.00 3.55
6259 7590 1.229359 CAGCAAGGCCAGGGATGAT 59.771 57.895 5.01 0.00 0.00 2.45
6365 7696 6.990939 TGATGCATTTGAAACAAGAAAATGGA 59.009 30.769 0.00 6.72 42.99 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.