Multiple sequence alignment - TraesCS6B01G314400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G314400 chr6B 100.000 5894 0 0 1 5894 562093612 562099505 0.000000e+00 10885.0
1 TraesCS6B01G314400 chr6B 83.843 458 44 9 1393 1825 179757683 179757231 5.500000e-110 409.0
2 TraesCS6B01G314400 chr6B 84.235 425 41 13 1413 1818 152082159 152081742 1.990000e-104 390.0
3 TraesCS6B01G314400 chr6B 81.099 455 55 21 1389 1822 198957534 198957978 9.460000e-88 335.0
4 TraesCS6B01G314400 chr6B 91.791 134 11 0 4948 5081 537553841 537553974 2.800000e-43 187.0
5 TraesCS6B01G314400 chr6B 82.653 98 13 4 821 915 671575872 671575968 3.790000e-12 84.2
6 TraesCS6B01G314400 chr6B 80.612 98 15 4 821 915 671094555 671094459 8.190000e-09 73.1
7 TraesCS6B01G314400 chr6A 95.697 2835 62 13 3077 5874 517523536 517526347 0.000000e+00 4505.0
8 TraesCS6B01G314400 chr6A 82.005 828 61 29 471 1291 517522680 517523426 1.800000e-174 623.0
9 TraesCS6B01G314400 chr6A 92.236 322 25 0 19 340 517522149 517522470 1.940000e-124 457.0
10 TraesCS6B01G314400 chr6A 88.936 235 24 2 19 251 115957670 115957436 7.470000e-74 289.0
11 TraesCS6B01G314400 chr6A 91.791 134 11 0 4948 5081 411770253 411770386 2.800000e-43 187.0
12 TraesCS6B01G314400 chr6A 91.045 134 12 0 4948 5081 263887017 263886884 1.300000e-41 182.0
13 TraesCS6B01G314400 chr7B 89.370 1270 124 10 1820 3084 261981791 261980528 0.000000e+00 1587.0
14 TraesCS6B01G314400 chr7B 88.082 1267 140 11 1820 3080 19145472 19144211 0.000000e+00 1493.0
15 TraesCS6B01G314400 chr7B 82.418 91 16 0 253 343 213450514 213450424 4.900000e-11 80.5
16 TraesCS6B01G314400 chr7B 77.236 123 23 5 780 898 741733362 741733483 3.810000e-07 67.6
17 TraesCS6B01G314400 chr3B 88.985 1271 122 14 1820 3078 823191636 823190372 0.000000e+00 1555.0
18 TraesCS6B01G314400 chr3B 87.893 1272 130 19 1820 3081 742122090 742120833 0.000000e+00 1474.0
19 TraesCS6B01G314400 chr3B 83.665 251 35 6 4997 5243 117922643 117922395 1.280000e-56 231.0
20 TraesCS6B01G314400 chr3B 87.179 78 7 3 776 851 65334569 65334493 1.050000e-12 86.1
21 TraesCS6B01G314400 chr2B 88.950 1267 126 10 1820 3081 442081660 442080403 0.000000e+00 1552.0
22 TraesCS6B01G314400 chr2B 88.863 1266 121 13 1820 3078 120243847 120242595 0.000000e+00 1539.0
23 TraesCS6B01G314400 chr2B 83.141 433 54 7 1393 1822 539384436 539384020 1.550000e-100 377.0
24 TraesCS6B01G314400 chr2B 83.333 408 39 13 1422 1822 120244653 120244268 3.380000e-92 350.0
25 TraesCS6B01G314400 chr2B 80.000 445 72 13 1384 1822 442082517 442082084 4.430000e-81 313.0
26 TraesCS6B01G314400 chr2B 84.783 92 14 0 252 343 746108734 746108643 6.290000e-15 93.5
27 TraesCS6B01G314400 chr5B 88.661 1270 129 14 1820 3084 86296899 86295640 0.000000e+00 1533.0
28 TraesCS6B01G314400 chr5B 87.884 1271 132 18 1820 3078 536698945 536700205 0.000000e+00 1474.0
29 TraesCS6B01G314400 chr5B 83.669 447 45 8 1385 1805 539198931 539199375 4.280000e-106 396.0
30 TraesCS6B01G314400 chr5B 83.370 451 39 11 1395 1822 285836273 285836710 9.270000e-103 385.0
31 TraesCS6B01G314400 chr5B 89.226 297 30 2 4948 5243 317304070 317304365 2.590000e-98 370.0
32 TraesCS6B01G314400 chr5B 82.400 250 41 3 4995 5241 591646774 591647023 1.290000e-51 215.0
33 TraesCS6B01G314400 chr3A 88.670 1271 124 12 1820 3081 492326806 492328065 0.000000e+00 1531.0
34 TraesCS6B01G314400 chr3A 91.791 134 11 0 4948 5081 401026737 401026604 2.800000e-43 187.0
35 TraesCS6B01G314400 chr4B 86.728 437 43 11 1393 1818 632119143 632119575 6.910000e-129 472.0
36 TraesCS6B01G314400 chr4B 91.908 173 10 4 5075 5244 406389289 406389460 7.630000e-59 239.0
37 TraesCS6B01G314400 chr4B 94.074 135 8 0 4947 5081 106227408 106227542 7.740000e-49 206.0
38 TraesCS6B01G314400 chr4B 86.486 74 7 3 564 634 179751924 179751851 1.760000e-10 78.7
39 TraesCS6B01G314400 chr4B 94.595 37 2 0 1021 1057 9675691 9675727 2.290000e-04 58.4
40 TraesCS6B01G314400 chrUn 85.219 433 43 7 1393 1822 98120289 98120703 5.460000e-115 425.0
41 TraesCS6B01G314400 chrUn 82.767 412 44 5 1437 1822 24380280 24380690 5.660000e-90 342.0
42 TraesCS6B01G314400 chrUn 82.767 412 44 5 1437 1822 381582834 381582424 5.660000e-90 342.0
43 TraesCS6B01G314400 chrUn 91.716 169 11 2 5073 5241 96478219 96478384 1.280000e-56 231.0
44 TraesCS6B01G314400 chrUn 90.698 172 14 2 5074 5244 34210748 34210918 1.650000e-55 228.0
45 TraesCS6B01G314400 chrUn 89.941 169 17 0 5079 5247 100087143 100087311 9.940000e-53 219.0
46 TraesCS6B01G314400 chrUn 90.741 162 15 0 5080 5241 141680746 141680907 3.580000e-52 217.0
47 TraesCS6B01G314400 chrUn 87.113 194 21 3 5077 5269 178663520 178663710 3.580000e-52 217.0
48 TraesCS6B01G314400 chrUn 87.113 194 21 3 5077 5269 178723407 178723597 3.580000e-52 217.0
49 TraesCS6B01G314400 chrUn 87.435 191 20 3 5080 5269 196158215 196158028 3.580000e-52 217.0
50 TraesCS6B01G314400 chrUn 87.435 191 20 3 5080 5269 351764473 351764286 3.580000e-52 217.0
51 TraesCS6B01G314400 chrUn 87.113 194 21 3 5077 5269 401572903 401573093 3.580000e-52 217.0
52 TraesCS6B01G314400 chrUn 88.235 170 15 5 5077 5243 243337451 243337284 1.300000e-46 198.0
53 TraesCS6B01G314400 chrUn 90.370 135 13 0 4947 5081 50619992 50619858 1.690000e-40 178.0
54 TraesCS6B01G314400 chrUn 88.514 148 14 3 4935 5080 126680644 126680498 6.070000e-40 176.0
55 TraesCS6B01G314400 chrUn 88.060 134 16 0 4948 5081 96471182 96471049 6.110000e-35 159.0
56 TraesCS6B01G314400 chrUn 88.060 134 14 1 4948 5081 480163470 480163339 2.200000e-34 158.0
57 TraesCS6B01G314400 chr3D 81.538 455 58 8 1390 1822 556642655 556643105 9.400000e-93 351.0
58 TraesCS6B01G314400 chr3D 91.860 172 10 4 5077 5245 87926165 87925995 2.750000e-58 237.0
59 TraesCS6B01G314400 chr3D 82.213 253 35 9 4997 5243 560940745 560940497 5.990000e-50 209.0
60 TraesCS6B01G314400 chr3D 81.673 251 39 7 4997 5243 163116441 163116688 1.000000e-47 202.0
61 TraesCS6B01G314400 chr3D 77.037 135 25 6 698 829 42397776 42397907 8.190000e-09 73.1
62 TraesCS6B01G314400 chr5D 87.541 305 28 4 4948 5243 279302573 279302876 1.570000e-90 344.0
63 TraesCS6B01G314400 chr5D 86.634 202 27 0 5042 5243 129872752 129872953 2.140000e-54 224.0
64 TraesCS6B01G314400 chr5D 82.278 237 31 10 693 923 348273334 348273565 1.680000e-45 195.0
65 TraesCS6B01G314400 chr5D 91.912 136 9 2 4947 5081 256749952 256749818 7.800000e-44 189.0
66 TraesCS6B01G314400 chr5D 78.027 223 34 13 973 1190 3828415 3828203 6.200000e-25 126.0
67 TraesCS6B01G314400 chr5D 73.611 288 55 17 882 1161 349096877 349097151 2.260000e-14 91.6
68 TraesCS6B01G314400 chr2D 82.683 410 45 12 1437 1822 403191809 403192216 2.030000e-89 340.0
69 TraesCS6B01G314400 chr2D 93.210 162 11 0 5080 5241 218046827 218046988 7.630000e-59 239.0
70 TraesCS6B01G314400 chr2D 91.791 134 11 0 4948 5081 79056167 79056300 2.800000e-43 187.0
71 TraesCS6B01G314400 chr2D 82.105 95 17 0 249 343 64013760 64013854 1.360000e-11 82.4
72 TraesCS6B01G314400 chr2D 86.486 74 10 0 252 325 529349786 529349859 1.360000e-11 82.4
73 TraesCS6B01G314400 chr1B 86.532 297 31 8 1528 1822 482709332 482709621 9.530000e-83 318.0
74 TraesCS6B01G314400 chr1B 96.875 32 1 0 776 807 170015197 170015166 3.000000e-03 54.7
75 TraesCS6B01G314400 chr4D 80.396 454 57 11 1393 1822 124072180 124071735 3.430000e-82 316.0
76 TraesCS6B01G314400 chr4D 91.908 173 10 4 5075 5244 326379864 326380035 7.630000e-59 239.0
77 TraesCS6B01G314400 chr4D 91.617 167 12 2 5076 5241 334164556 334164391 4.590000e-56 230.0
78 TraesCS6B01G314400 chr4D 85.507 207 25 5 5041 5243 238640126 238640331 1.660000e-50 211.0
79 TraesCS6B01G314400 chr4D 91.176 136 11 1 4947 5081 74079350 74079485 3.630000e-42 183.0
80 TraesCS6B01G314400 chr4D 91.473 129 10 1 4954 5081 170226049 170225921 6.070000e-40 176.0
81 TraesCS6B01G314400 chr4D 90.226 133 13 0 4947 5079 354880645 354880777 2.180000e-39 174.0
82 TraesCS6B01G314400 chr4D 90.152 132 13 0 4950 5081 468361524 468361393 7.850000e-39 172.0
83 TraesCS6B01G314400 chr4D 88.971 136 13 2 4947 5081 335774283 335774417 3.650000e-37 167.0
84 TraesCS6B01G314400 chr6D 90.171 234 22 1 19 251 97132044 97131811 2.670000e-78 303.0
85 TraesCS6B01G314400 chr6D 89.831 177 16 2 5071 5247 21052140 21051966 5.940000e-55 226.0
86 TraesCS6B01G314400 chr6D 91.729 133 11 0 4948 5080 221843146 221843014 1.010000e-42 185.0
87 TraesCS6B01G314400 chr6D 89.706 136 13 1 4947 5081 386931472 386931337 7.850000e-39 172.0
88 TraesCS6B01G314400 chr4A 84.892 278 41 1 4967 5244 657101271 657100995 4.500000e-71 279.0
89 TraesCS6B01G314400 chr4A 82.329 249 38 4 4997 5243 714441868 714441624 1.660000e-50 211.0
90 TraesCS6B01G314400 chr4A 92.593 135 9 1 4947 5081 690411289 690411422 6.030000e-45 193.0
91 TraesCS6B01G314400 chr4A 91.367 139 8 2 4943 5081 296323956 296323822 2.800000e-43 187.0
92 TraesCS6B01G314400 chr7A 78.700 446 69 19 1393 1822 29435830 29436265 2.090000e-69 274.0
93 TraesCS6B01G314400 chr7A 83.750 80 12 1 252 331 470120402 470120480 2.280000e-09 75.0
94 TraesCS6B01G314400 chr5A 92.169 166 13 0 5077 5242 320214408 320214243 9.870000e-58 235.0
95 TraesCS6B01G314400 chr5A 85.915 71 10 0 255 325 458898925 458898855 6.330000e-10 76.8
96 TraesCS6B01G314400 chr2A 83.137 255 31 9 4998 5246 753421809 753421561 7.690000e-54 222.0
97 TraesCS6B01G314400 chr2A 84.783 92 14 0 252 343 21828382 21828291 6.290000e-15 93.5
98 TraesCS6B01G314400 chr2A 81.720 93 17 0 251 343 563943143 563943235 1.760000e-10 78.7
99 TraesCS6B01G314400 chr7D 92.593 135 10 0 4947 5081 34757019 34756885 1.680000e-45 195.0
100 TraesCS6B01G314400 chr7D 88.462 156 13 5 4931 5081 454079056 454079211 3.630000e-42 183.0
101 TraesCS6B01G314400 chr7D 83.529 85 14 0 252 336 51753799 51753883 4.900000e-11 80.5
102 TraesCS6B01G314400 chr7D 80.952 84 15 1 1003 1086 20944451 20944533 1.370000e-06 65.8
103 TraesCS6B01G314400 chr1A 91.045 134 12 0 4948 5081 240310130 240310263 1.300000e-41 182.0
104 TraesCS6B01G314400 chr1D 89.051 137 15 0 4948 5084 111003525 111003389 2.820000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G314400 chr6B 562093612 562099505 5893 False 10885.000000 10885 100.000000 1 5894 1 chr6B.!!$F3 5893
1 TraesCS6B01G314400 chr6A 517522149 517526347 4198 False 1861.666667 4505 89.979333 19 5874 3 chr6A.!!$F2 5855
2 TraesCS6B01G314400 chr7B 261980528 261981791 1263 True 1587.000000 1587 89.370000 1820 3084 1 chr7B.!!$R3 1264
3 TraesCS6B01G314400 chr7B 19144211 19145472 1261 True 1493.000000 1493 88.082000 1820 3080 1 chr7B.!!$R1 1260
4 TraesCS6B01G314400 chr3B 823190372 823191636 1264 True 1555.000000 1555 88.985000 1820 3078 1 chr3B.!!$R4 1258
5 TraesCS6B01G314400 chr3B 742120833 742122090 1257 True 1474.000000 1474 87.893000 1820 3081 1 chr3B.!!$R3 1261
6 TraesCS6B01G314400 chr2B 120242595 120244653 2058 True 944.500000 1539 86.098000 1422 3078 2 chr2B.!!$R3 1656
7 TraesCS6B01G314400 chr2B 442080403 442082517 2114 True 932.500000 1552 84.475000 1384 3081 2 chr2B.!!$R4 1697
8 TraesCS6B01G314400 chr5B 86295640 86296899 1259 True 1533.000000 1533 88.661000 1820 3084 1 chr5B.!!$R1 1264
9 TraesCS6B01G314400 chr5B 536698945 536700205 1260 False 1474.000000 1474 87.884000 1820 3078 1 chr5B.!!$F3 1258
10 TraesCS6B01G314400 chr3A 492326806 492328065 1259 False 1531.000000 1531 88.670000 1820 3081 1 chr3A.!!$F1 1261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 556 0.033011 ACGCAGGGTCATCCTAGAGT 60.033 55.0 0.00 0.00 46.12 3.24 F
414 576 0.108615 CTGACTTCTAGTGGGCGGTG 60.109 60.0 0.00 0.00 0.00 4.94 F
525 687 0.553819 AGGTGGTGTTGGGCTAAACA 59.446 50.0 2.78 2.78 37.71 2.83 F
1961 2593 0.259065 TTGGCACCTTTGTACACCCA 59.741 50.0 0.00 0.00 0.00 4.51 F
2163 2795 0.320421 CAATGGTCGTGGACTCGGTT 60.320 55.0 0.00 0.00 32.47 4.44 F
2354 2987 0.320771 GGCTCATCCGATAATGGCGT 60.321 55.0 0.00 0.00 0.00 5.68 F
3875 4534 0.478072 TCTTCCAGAAAAGGCCTGCA 59.522 50.0 5.69 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 1492 0.179034 GCTGCCCCTATGTCTCCAAG 60.179 60.000 0.00 0.00 0.00 3.61 R
1347 1532 0.248215 GATCGCGATGTTGCCAAAGG 60.248 55.000 29.09 0.00 0.00 3.11 R
2162 2794 0.318360 CGACGACTATGGGCGCATAA 60.318 55.000 22.18 8.43 0.00 1.90 R
3680 4339 0.033504 AGTTGTGTACACTGGAGCGG 59.966 55.000 25.60 0.00 0.00 5.52 R
4087 4746 1.529244 AAGTCAAGGTGCCACAGCC 60.529 57.895 0.00 0.00 38.69 4.85 R
4342 5002 3.372954 GACTTTCGTCTGACCATATCCG 58.627 50.000 1.55 0.00 37.19 4.18 R
5744 6437 0.102300 GGCGTCTTGTTTGCACCTTT 59.898 50.000 0.00 0.00 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.459823 TTGCGAGGCTGACACTCT 58.540 55.556 0.00 0.00 32.83 3.24
49 50 1.085893 TATCACATGTGGCTTGCACG 58.914 50.000 25.16 0.00 0.00 5.34
74 75 2.639839 TGCTATAAGAGATGGGAAGGCC 59.360 50.000 0.00 0.00 0.00 5.19
76 77 1.807814 ATAAGAGATGGGAAGGCCGT 58.192 50.000 0.00 0.00 33.83 5.68
88 89 1.841302 AAGGCCGTTGAGGATGCTCA 61.841 55.000 13.58 13.58 45.00 4.26
104 105 1.996292 CTCATTCTTTGGTCGAGCGA 58.004 50.000 10.46 5.07 0.00 4.93
140 141 0.037605 AGTACTGGGCTAACGCACAC 60.038 55.000 0.00 0.00 46.59 3.82
165 166 1.301716 CCGGTCAACACACAGGAGG 60.302 63.158 0.00 0.00 33.70 4.30
197 198 1.228894 TCTTGGCGACCTCCTGTCT 60.229 57.895 0.00 0.00 42.13 3.41
199 200 0.457851 CTTGGCGACCTCCTGTCTAG 59.542 60.000 0.00 0.00 42.13 2.43
212 213 1.415659 CTGTCTAGGGATGGCTCAAGG 59.584 57.143 0.00 0.00 0.00 3.61
290 291 3.066064 CGTCTCTCTTCATCAGTTCGGAT 59.934 47.826 0.00 0.00 0.00 4.18
305 306 4.338118 AGTTCGGATTTTTGAAGCAACTGA 59.662 37.500 0.00 0.00 0.00 3.41
309 310 4.261155 CGGATTTTTGAAGCAACTGACTGA 60.261 41.667 0.00 0.00 0.00 3.41
311 312 6.042143 GGATTTTTGAAGCAACTGACTGAAA 58.958 36.000 0.00 0.00 0.00 2.69
320 321 6.152932 AGCAACTGACTGAAACATGAATTT 57.847 33.333 0.00 0.00 0.00 1.82
388 550 2.512515 GAGCACGCAGGGTCATCC 60.513 66.667 0.00 0.00 35.43 3.51
390 552 1.676678 GAGCACGCAGGGTCATCCTA 61.677 60.000 0.00 0.00 46.12 2.94
391 553 1.227380 GCACGCAGGGTCATCCTAG 60.227 63.158 0.00 0.00 46.12 3.02
392 554 1.676678 GCACGCAGGGTCATCCTAGA 61.677 60.000 0.00 0.00 46.12 2.43
393 555 0.387202 CACGCAGGGTCATCCTAGAG 59.613 60.000 0.00 0.00 46.12 2.43
394 556 0.033011 ACGCAGGGTCATCCTAGAGT 60.033 55.000 0.00 0.00 46.12 3.24
395 557 0.671251 CGCAGGGTCATCCTAGAGTC 59.329 60.000 0.00 0.00 46.12 3.36
396 558 1.752436 CGCAGGGTCATCCTAGAGTCT 60.752 57.143 0.00 0.00 46.12 3.24
397 559 1.686052 GCAGGGTCATCCTAGAGTCTG 59.314 57.143 1.86 0.00 46.12 3.51
398 560 2.688214 GCAGGGTCATCCTAGAGTCTGA 60.688 54.545 1.86 0.00 46.12 3.27
399 561 2.955660 CAGGGTCATCCTAGAGTCTGAC 59.044 54.545 1.86 0.00 46.12 3.51
400 562 2.856231 AGGGTCATCCTAGAGTCTGACT 59.144 50.000 10.66 10.66 45.98 3.41
401 563 3.270960 AGGGTCATCCTAGAGTCTGACTT 59.729 47.826 12.27 4.93 45.98 3.01
402 564 3.634910 GGGTCATCCTAGAGTCTGACTTC 59.365 52.174 12.27 5.56 38.41 3.01
403 565 4.532834 GGTCATCCTAGAGTCTGACTTCT 58.467 47.826 12.27 12.27 38.41 2.85
404 566 5.398126 GGGTCATCCTAGAGTCTGACTTCTA 60.398 48.000 12.27 12.70 38.41 2.10
405 567 5.763204 GGTCATCCTAGAGTCTGACTTCTAG 59.237 48.000 23.21 23.21 38.41 2.43
406 568 6.354130 GTCATCCTAGAGTCTGACTTCTAGT 58.646 44.000 25.45 15.31 36.07 2.57
407 569 6.260050 GTCATCCTAGAGTCTGACTTCTAGTG 59.740 46.154 25.45 21.26 36.07 2.74
408 570 5.105567 TCCTAGAGTCTGACTTCTAGTGG 57.894 47.826 25.45 18.82 30.72 4.00
409 571 4.080243 TCCTAGAGTCTGACTTCTAGTGGG 60.080 50.000 25.45 18.41 30.72 4.61
410 572 2.452505 AGAGTCTGACTTCTAGTGGGC 58.547 52.381 12.27 0.00 0.00 5.36
411 573 1.133407 GAGTCTGACTTCTAGTGGGCG 59.867 57.143 12.27 0.00 0.00 6.13
412 574 0.173708 GTCTGACTTCTAGTGGGCGG 59.826 60.000 0.00 0.00 0.00 6.13
413 575 0.251653 TCTGACTTCTAGTGGGCGGT 60.252 55.000 0.00 0.00 0.00 5.68
414 576 0.108615 CTGACTTCTAGTGGGCGGTG 60.109 60.000 0.00 0.00 0.00 4.94
415 577 1.448013 GACTTCTAGTGGGCGGTGC 60.448 63.158 0.00 0.00 0.00 5.01
416 578 2.167398 GACTTCTAGTGGGCGGTGCA 62.167 60.000 0.00 0.00 0.00 4.57
417 579 1.448540 CTTCTAGTGGGCGGTGCAG 60.449 63.158 0.00 0.00 0.00 4.41
418 580 2.859273 CTTCTAGTGGGCGGTGCAGG 62.859 65.000 0.00 0.00 0.00 4.85
426 588 4.389576 GCGGTGCAGGCGTTGAAG 62.390 66.667 0.00 0.00 0.00 3.02
427 589 2.664851 CGGTGCAGGCGTTGAAGA 60.665 61.111 0.00 0.00 0.00 2.87
428 590 2.250939 CGGTGCAGGCGTTGAAGAA 61.251 57.895 0.00 0.00 0.00 2.52
429 591 1.577328 CGGTGCAGGCGTTGAAGAAT 61.577 55.000 0.00 0.00 0.00 2.40
430 592 1.448985 GGTGCAGGCGTTGAAGAATA 58.551 50.000 0.00 0.00 0.00 1.75
431 593 1.810151 GGTGCAGGCGTTGAAGAATAA 59.190 47.619 0.00 0.00 0.00 1.40
432 594 2.423538 GGTGCAGGCGTTGAAGAATAAT 59.576 45.455 0.00 0.00 0.00 1.28
433 595 3.429085 GTGCAGGCGTTGAAGAATAATG 58.571 45.455 0.00 0.00 0.00 1.90
434 596 3.126858 GTGCAGGCGTTGAAGAATAATGA 59.873 43.478 0.00 0.00 0.00 2.57
435 597 3.374988 TGCAGGCGTTGAAGAATAATGAG 59.625 43.478 0.00 0.00 0.00 2.90
436 598 3.790123 GCAGGCGTTGAAGAATAATGAGC 60.790 47.826 0.00 0.00 0.00 4.26
437 599 3.624861 CAGGCGTTGAAGAATAATGAGCT 59.375 43.478 0.00 0.00 0.00 4.09
438 600 3.624861 AGGCGTTGAAGAATAATGAGCTG 59.375 43.478 0.00 0.00 0.00 4.24
439 601 3.242870 GGCGTTGAAGAATAATGAGCTGG 60.243 47.826 0.00 0.00 0.00 4.85
440 602 3.623060 GCGTTGAAGAATAATGAGCTGGA 59.377 43.478 0.00 0.00 0.00 3.86
441 603 4.260538 GCGTTGAAGAATAATGAGCTGGAG 60.261 45.833 0.00 0.00 0.00 3.86
442 604 5.111989 CGTTGAAGAATAATGAGCTGGAGA 58.888 41.667 0.00 0.00 0.00 3.71
443 605 5.233902 CGTTGAAGAATAATGAGCTGGAGAG 59.766 44.000 0.00 0.00 0.00 3.20
444 606 6.344500 GTTGAAGAATAATGAGCTGGAGAGA 58.656 40.000 0.00 0.00 0.00 3.10
445 607 6.744175 TGAAGAATAATGAGCTGGAGAGAT 57.256 37.500 0.00 0.00 0.00 2.75
446 608 6.757237 TGAAGAATAATGAGCTGGAGAGATC 58.243 40.000 0.00 0.00 35.00 2.75
450 612 3.577389 TGAGCTGGAGAGATCACGA 57.423 52.632 0.00 0.00 39.74 4.35
451 613 2.064434 TGAGCTGGAGAGATCACGAT 57.936 50.000 0.00 0.00 39.74 3.73
452 614 3.214696 TGAGCTGGAGAGATCACGATA 57.785 47.619 0.00 0.00 39.74 2.92
453 615 3.760738 TGAGCTGGAGAGATCACGATAT 58.239 45.455 0.00 0.00 39.74 1.63
454 616 3.505293 TGAGCTGGAGAGATCACGATATG 59.495 47.826 0.00 0.00 39.74 1.78
455 617 2.824936 AGCTGGAGAGATCACGATATGG 59.175 50.000 0.00 0.00 0.00 2.74
456 618 2.673610 GCTGGAGAGATCACGATATGGC 60.674 54.545 0.00 0.00 0.00 4.40
457 619 2.824936 CTGGAGAGATCACGATATGGCT 59.175 50.000 0.00 0.00 0.00 4.75
458 620 2.822561 TGGAGAGATCACGATATGGCTC 59.177 50.000 0.00 0.00 33.10 4.70
459 621 3.088532 GGAGAGATCACGATATGGCTCT 58.911 50.000 0.00 0.00 40.76 4.09
460 622 3.128589 GGAGAGATCACGATATGGCTCTC 59.871 52.174 0.00 0.00 46.09 3.20
461 623 4.009675 GAGAGATCACGATATGGCTCTCT 58.990 47.826 12.07 12.07 44.86 3.10
462 624 4.009675 AGAGATCACGATATGGCTCTCTC 58.990 47.826 0.00 6.25 40.76 3.20
463 625 2.746904 AGATCACGATATGGCTCTCTCG 59.253 50.000 0.00 0.00 37.17 4.04
464 626 1.968704 TCACGATATGGCTCTCTCGT 58.031 50.000 0.00 0.00 44.48 4.18
466 628 1.968704 ACGATATGGCTCTCTCGTGA 58.031 50.000 0.00 0.00 42.26 4.35
467 629 2.298610 ACGATATGGCTCTCTCGTGAA 58.701 47.619 0.00 0.00 42.26 3.18
468 630 2.292016 ACGATATGGCTCTCTCGTGAAG 59.708 50.000 0.00 0.00 42.26 3.02
469 631 2.351253 CGATATGGCTCTCTCGTGAAGG 60.351 54.545 0.00 0.00 0.00 3.46
487 649 4.097135 TGAAGGAGATCAAAGAGCTACTCG 59.903 45.833 0.00 0.00 38.41 4.18
488 650 2.955660 AGGAGATCAAAGAGCTACTCGG 59.044 50.000 0.00 0.00 33.54 4.63
490 652 2.099921 GAGATCAAAGAGCTACTCGGCA 59.900 50.000 0.00 0.00 35.36 5.69
525 687 0.553819 AGGTGGTGTTGGGCTAAACA 59.446 50.000 2.78 2.78 37.71 2.83
605 767 7.229907 TGTGTAAGACTTGGTTTTCTATTTCCC 59.770 37.037 0.00 0.00 0.00 3.97
608 770 3.427573 ACTTGGTTTTCTATTTCCCCGG 58.572 45.455 0.00 0.00 0.00 5.73
609 771 3.074836 ACTTGGTTTTCTATTTCCCCGGA 59.925 43.478 0.73 0.00 0.00 5.14
610 772 4.264217 ACTTGGTTTTCTATTTCCCCGGAT 60.264 41.667 0.73 0.00 0.00 4.18
611 773 5.044698 ACTTGGTTTTCTATTTCCCCGGATA 60.045 40.000 0.73 0.00 0.00 2.59
612 774 5.043737 TGGTTTTCTATTTCCCCGGATAG 57.956 43.478 0.73 1.69 0.00 2.08
613 775 4.475747 TGGTTTTCTATTTCCCCGGATAGT 59.524 41.667 0.73 0.00 0.00 2.12
614 776 5.666718 TGGTTTTCTATTTCCCCGGATAGTA 59.333 40.000 0.73 0.00 0.00 1.82
615 777 6.330778 TGGTTTTCTATTTCCCCGGATAGTAT 59.669 38.462 0.73 0.00 0.00 2.12
616 778 7.147266 TGGTTTTCTATTTCCCCGGATAGTATT 60.147 37.037 0.73 0.00 0.00 1.89
617 779 7.389884 GGTTTTCTATTTCCCCGGATAGTATTC 59.610 40.741 0.73 0.00 0.00 1.75
618 780 5.909621 TCTATTTCCCCGGATAGTATTCG 57.090 43.478 0.73 3.65 0.00 3.34
619 781 5.327732 TCTATTTCCCCGGATAGTATTCGT 58.672 41.667 0.73 0.00 0.00 3.85
620 782 3.738830 TTTCCCCGGATAGTATTCGTG 57.261 47.619 0.73 0.00 0.00 4.35
621 783 2.662535 TCCCCGGATAGTATTCGTGA 57.337 50.000 0.73 3.51 0.00 4.35
622 784 2.233271 TCCCCGGATAGTATTCGTGAC 58.767 52.381 0.73 0.00 0.00 3.67
623 785 1.958579 CCCCGGATAGTATTCGTGACA 59.041 52.381 0.73 0.00 0.00 3.58
624 786 2.561419 CCCCGGATAGTATTCGTGACAT 59.439 50.000 0.73 0.00 0.00 3.06
625 787 3.006537 CCCCGGATAGTATTCGTGACATT 59.993 47.826 0.73 0.00 0.00 2.71
626 788 4.219070 CCCCGGATAGTATTCGTGACATTA 59.781 45.833 0.73 0.00 0.00 1.90
627 789 5.105473 CCCCGGATAGTATTCGTGACATTAT 60.105 44.000 0.73 0.00 0.00 1.28
628 790 6.395629 CCCGGATAGTATTCGTGACATTATT 58.604 40.000 0.73 0.00 0.00 1.40
629 791 6.310467 CCCGGATAGTATTCGTGACATTATTG 59.690 42.308 0.73 0.00 0.00 1.90
630 792 6.183360 CCGGATAGTATTCGTGACATTATTGC 60.183 42.308 9.95 0.00 0.00 3.56
673 835 7.817641 ACTACTTAATAAAAGGCAGCAACTTC 58.182 34.615 0.00 0.00 0.00 3.01
682 844 4.039603 AGGCAGCAACTTCTCCTAAAAT 57.960 40.909 0.00 0.00 0.00 1.82
687 849 7.179160 AGGCAGCAACTTCTCCTAAAATAATTT 59.821 33.333 0.00 0.00 0.00 1.82
688 850 7.819415 GGCAGCAACTTCTCCTAAAATAATTTT 59.181 33.333 0.00 0.00 36.67 1.82
689 851 9.855021 GCAGCAACTTCTCCTAAAATAATTTTA 57.145 29.630 0.00 0.00 34.19 1.52
779 941 6.599437 ACATTTCTTCACATACACGTTTAGC 58.401 36.000 0.00 0.00 0.00 3.09
944 1110 7.985634 ACACATGTATCTTTTTCAAACACAC 57.014 32.000 0.00 0.00 0.00 3.82
947 1113 7.853437 CACATGTATCTTTTTCAAACACACGTA 59.147 33.333 0.00 0.00 0.00 3.57
1019 1185 7.081976 ACATCTTTTTAAATACACGAGCAACC 58.918 34.615 0.00 0.00 0.00 3.77
1034 1200 4.207019 CGAGCAACCTTTTTCAAACACATC 59.793 41.667 0.00 0.00 0.00 3.06
1110 1276 8.665643 AGTCATTCAAAAAGATTCAAAATGCA 57.334 26.923 0.00 0.00 0.00 3.96
1245 1415 9.693157 CATGAAGAACAAAAAGAACATGAAAAC 57.307 29.630 0.00 0.00 36.87 2.43
1246 1416 7.948137 TGAAGAACAAAAAGAACATGAAAACG 58.052 30.769 0.00 0.00 0.00 3.60
1291 1461 4.166888 TGGCCCATCTCGAGCTGC 62.167 66.667 10.79 8.48 0.00 5.25
1294 1464 2.185350 CCCATCTCGAGCTGCGTT 59.815 61.111 10.79 0.00 41.80 4.84
1296 1466 1.153765 CCATCTCGAGCTGCGTTGA 60.154 57.895 10.79 0.00 41.80 3.18
1297 1467 1.416813 CCATCTCGAGCTGCGTTGAC 61.417 60.000 10.79 0.00 41.80 3.18
1298 1468 1.515088 ATCTCGAGCTGCGTTGACG 60.515 57.895 7.81 0.00 41.80 4.35
1308 1478 3.110178 CGTTGACGCGAGGTTCCC 61.110 66.667 15.93 0.00 0.00 3.97
1309 1479 2.342648 GTTGACGCGAGGTTCCCT 59.657 61.111 15.93 0.00 36.03 4.20
1310 1480 1.301479 GTTGACGCGAGGTTCCCTT 60.301 57.895 15.93 0.00 31.76 3.95
1311 1481 0.883370 GTTGACGCGAGGTTCCCTTT 60.883 55.000 15.93 0.00 31.76 3.11
1312 1482 0.882927 TTGACGCGAGGTTCCCTTTG 60.883 55.000 15.93 0.00 31.76 2.77
1313 1483 1.301479 GACGCGAGGTTCCCTTTGT 60.301 57.895 15.93 0.00 31.76 2.83
1314 1484 1.289800 GACGCGAGGTTCCCTTTGTC 61.290 60.000 15.93 0.00 31.76 3.18
1315 1485 1.004918 CGCGAGGTTCCCTTTGTCT 60.005 57.895 0.00 0.00 31.76 3.41
1316 1486 1.014564 CGCGAGGTTCCCTTTGTCTC 61.015 60.000 0.00 0.00 31.76 3.36
1317 1487 1.014564 GCGAGGTTCCCTTTGTCTCG 61.015 60.000 0.00 0.00 46.72 4.04
1319 1489 1.270147 CGAGGTTCCCTTTGTCTCGTT 60.270 52.381 0.00 0.00 41.37 3.85
1320 1490 2.143925 GAGGTTCCCTTTGTCTCGTTG 58.856 52.381 0.00 0.00 31.76 4.10
1321 1491 1.489230 AGGTTCCCTTTGTCTCGTTGT 59.511 47.619 0.00 0.00 0.00 3.32
1322 1492 1.871676 GGTTCCCTTTGTCTCGTTGTC 59.128 52.381 0.00 0.00 0.00 3.18
1323 1493 2.484947 GGTTCCCTTTGTCTCGTTGTCT 60.485 50.000 0.00 0.00 0.00 3.41
1324 1494 3.203716 GTTCCCTTTGTCTCGTTGTCTT 58.796 45.455 0.00 0.00 0.00 3.01
1339 1524 1.204146 GTCTTGGAGACATAGGGGCA 58.796 55.000 3.33 0.00 44.45 5.36
1343 1528 2.423446 GAGACATAGGGGCAGCGG 59.577 66.667 0.00 0.00 0.00 5.52
1368 1553 2.889988 TGGCAACATCGCGATCCG 60.890 61.111 20.85 12.01 46.17 4.18
1391 1576 1.003718 GTTCGACCCCACTTCCCTG 60.004 63.158 0.00 0.00 0.00 4.45
1413 1598 2.019984 GAGCATCTCCAACCATTGACC 58.980 52.381 0.00 0.00 0.00 4.02
1416 1603 1.285962 CATCTCCAACCATTGACCCCT 59.714 52.381 0.00 0.00 0.00 4.79
1420 1607 0.336048 CCAACCATTGACCCCTCCAT 59.664 55.000 0.00 0.00 0.00 3.41
1476 1663 0.685097 GTATAATCGGCTCTGGGGCA 59.315 55.000 0.82 0.00 40.90 5.36
1485 1672 3.267233 TCTGGGGCAGTTGGGCAT 61.267 61.111 0.00 0.00 45.66 4.40
1549 1736 1.248101 ATTTTCCGGCCCACTTTCGG 61.248 55.000 0.00 0.00 44.59 4.30
1573 1760 3.297134 AAAATGGCCAGATATCGGTGT 57.703 42.857 13.05 0.00 0.00 4.16
1590 1777 2.571212 GTGTGAATCGGCCCATATTCA 58.429 47.619 15.38 15.38 39.24 2.57
1604 1791 0.320858 TATTCAGCGTGGTTCGGCAA 60.321 50.000 0.00 0.00 40.26 4.52
1609 1814 0.604243 AGCGTGGTTCGGCAACATAA 60.604 50.000 0.00 0.00 40.26 1.90
1613 1818 3.426426 GCGTGGTTCGGCAACATAAATAA 60.426 43.478 0.00 0.00 40.26 1.40
1765 1970 3.041946 CCTTACTCCTCCATAGGTGCTT 58.958 50.000 0.00 0.00 44.09 3.91
1818 2023 0.558220 TGGGTCTCGGATCTCCTGAT 59.442 55.000 0.00 0.00 35.26 2.90
1958 2590 2.793278 CCTTTGGCACCTTTGTACAC 57.207 50.000 0.00 0.00 0.00 2.90
1961 2593 0.259065 TTGGCACCTTTGTACACCCA 59.741 50.000 0.00 0.00 0.00 4.51
1992 2624 4.736464 GCAAACGGACAGTTCTTCCATTTT 60.736 41.667 0.00 0.00 43.37 1.82
2004 2636 4.247258 TCTTCCATTTTCAATGCATGCAC 58.753 39.130 25.37 0.00 0.00 4.57
2006 2638 4.274602 TCCATTTTCAATGCATGCACTT 57.725 36.364 25.37 15.39 0.00 3.16
2082 2714 0.524862 CAGTGTCTTCAGCATTGGGC 59.475 55.000 0.00 0.00 45.30 5.36
2083 2715 0.610232 AGTGTCTTCAGCATTGGGCC 60.610 55.000 0.00 0.00 46.50 5.80
2120 2752 1.037030 CCAAACACTGCCACCACTGT 61.037 55.000 0.00 0.00 0.00 3.55
2123 2755 1.920734 AACACTGCCACCACTGTCCA 61.921 55.000 0.00 0.00 0.00 4.02
2162 2794 1.183030 TCAATGGTCGTGGACTCGGT 61.183 55.000 0.00 0.00 32.47 4.69
2163 2795 0.320421 CAATGGTCGTGGACTCGGTT 60.320 55.000 0.00 0.00 32.47 4.44
2183 2815 2.011741 ATGCGCCCATAGTCGTCGAA 62.012 55.000 4.18 0.00 0.00 3.71
2223 2855 1.906990 ATGCAAGCATCCTCATAGCC 58.093 50.000 0.86 0.00 29.42 3.93
2354 2987 0.320771 GGCTCATCCGATAATGGCGT 60.321 55.000 0.00 0.00 0.00 5.68
2370 3003 1.458064 GGCGTCGAAATGTTTTCTCGA 59.542 47.619 0.00 0.00 39.16 4.04
2760 3397 2.359478 TTCTCTTTTCCGGCGGGC 60.359 61.111 27.98 0.00 0.00 6.13
2765 3402 2.598985 TTTTCCGGCGGGCAATGT 60.599 55.556 27.98 0.00 0.00 2.71
2812 3449 4.227134 CGTCGGGATCAGCAGGGG 62.227 72.222 0.00 0.00 0.00 4.79
2844 3489 3.739613 GGGGGTGGGAGGCGAATT 61.740 66.667 0.00 0.00 0.00 2.17
2854 3499 1.366854 GAGGCGAATTTGGACGGTCC 61.367 60.000 20.36 20.36 36.96 4.46
2855 3500 1.673009 GGCGAATTTGGACGGTCCA 60.673 57.895 25.53 25.53 46.61 4.02
2903 3549 1.402787 CAGGTGTGCTTTTCCCTTGT 58.597 50.000 0.00 0.00 0.00 3.16
3048 3705 1.584495 CGTAAAAAGTGGCCTGGGC 59.416 57.895 14.23 14.23 41.06 5.36
3205 3864 1.043116 TCCTCCATCGAAGACCGCAT 61.043 55.000 0.00 0.00 42.51 4.73
3254 3913 2.993264 TCCGTCCCCTTCACCGTC 60.993 66.667 0.00 0.00 0.00 4.79
3295 3954 2.560119 CGGAGATCTCCCGCCTCTG 61.560 68.421 31.77 14.95 46.96 3.35
3318 3977 2.317149 GAAGTGGCCGCCTCTGCTAT 62.317 60.000 14.07 0.00 34.43 2.97
3332 3991 5.805751 GCCTCTGCTATATCCAATGAATGGT 60.806 44.000 0.00 0.00 41.65 3.55
3409 4068 3.077907 CCCCGGGACTGTGAACAT 58.922 61.111 26.32 0.00 0.00 2.71
3428 4087 4.648651 ACATGTACAAGTCCCCAGTTTAC 58.351 43.478 0.00 0.00 0.00 2.01
3500 4159 1.153349 GACGCTCCACAAGATCCCC 60.153 63.158 0.00 0.00 0.00 4.81
3654 4313 3.847081 AGTAGACCCAATCTAGTAGCCC 58.153 50.000 0.00 0.00 41.13 5.19
3680 4339 3.418068 GCTGACCTGTGCGTGCTC 61.418 66.667 0.00 0.00 0.00 4.26
3864 4523 4.467438 TGCTATTCTGTGATGTCTTCCAGA 59.533 41.667 0.00 0.00 32.90 3.86
3875 4534 0.478072 TCTTCCAGAAAAGGCCTGCA 59.522 50.000 5.69 0.00 0.00 4.41
3946 4605 2.867624 ACGCCCATTTCATGATATGCT 58.132 42.857 17.80 0.95 0.00 3.79
4043 4702 1.227383 CCCAATGAGCCCTGGTACC 59.773 63.158 4.43 4.43 0.00 3.34
4051 4710 1.205460 AGCCCTGGTACCGGTTTCAT 61.205 55.000 15.04 0.00 0.00 2.57
4081 4740 3.692576 GCTATGCTTTGATGACAAGCAG 58.307 45.455 12.50 2.30 40.43 4.24
4082 4741 2.649331 ATGCTTTGATGACAAGCAGC 57.351 45.000 12.50 5.84 40.43 5.25
4083 4742 1.612676 TGCTTTGATGACAAGCAGCT 58.387 45.000 3.23 0.00 39.31 4.24
4084 4743 1.268625 TGCTTTGATGACAAGCAGCTG 59.731 47.619 10.11 10.11 39.31 4.24
4085 4744 1.268899 GCTTTGATGACAAGCAGCTGT 59.731 47.619 16.64 0.00 37.09 4.40
4086 4745 2.921069 GCTTTGATGACAAGCAGCTGTG 60.921 50.000 16.64 9.27 37.09 3.66
4087 4746 1.241165 TTGATGACAAGCAGCTGTGG 58.759 50.000 16.64 7.70 33.04 4.17
4147 4806 6.617782 AATCTTCTGAATTGGACTCTCTCA 57.382 37.500 0.00 0.00 0.00 3.27
4342 5002 2.747855 CCTCCTGGGCAAAGACGC 60.748 66.667 0.00 0.00 0.00 5.19
4401 5061 3.652057 TTATTTCCTCCAGGCTTCCAG 57.348 47.619 0.00 0.00 34.44 3.86
4403 5063 0.987294 TTTCCTCCAGGCTTCCAGAG 59.013 55.000 0.00 0.00 34.44 3.35
4416 5076 1.996292 TCCAGAGTTCTTCAATCGCG 58.004 50.000 0.00 0.00 0.00 5.87
4603 5279 3.059352 ACACTAGGTTGACAATCAGGC 57.941 47.619 0.39 0.00 0.00 4.85
4604 5280 2.639839 ACACTAGGTTGACAATCAGGCT 59.360 45.455 0.39 0.00 0.00 4.58
4605 5281 3.838317 ACACTAGGTTGACAATCAGGCTA 59.162 43.478 0.39 0.00 0.00 3.93
4606 5282 4.286032 ACACTAGGTTGACAATCAGGCTAA 59.714 41.667 0.39 0.00 0.00 3.09
4607 5283 5.045578 ACACTAGGTTGACAATCAGGCTAAT 60.046 40.000 0.39 0.00 0.00 1.73
4608 5284 6.156256 ACACTAGGTTGACAATCAGGCTAATA 59.844 38.462 0.39 0.00 0.00 0.98
4609 5285 7.047891 CACTAGGTTGACAATCAGGCTAATAA 58.952 38.462 0.39 0.00 0.00 1.40
4610 5286 7.552687 CACTAGGTTGACAATCAGGCTAATAAA 59.447 37.037 0.39 0.00 0.00 1.40
4611 5287 8.275040 ACTAGGTTGACAATCAGGCTAATAAAT 58.725 33.333 0.39 0.00 0.00 1.40
4612 5288 9.778741 CTAGGTTGACAATCAGGCTAATAAATA 57.221 33.333 0.39 0.00 0.00 1.40
4614 5290 9.071276 AGGTTGACAATCAGGCTAATAAATATG 57.929 33.333 0.39 0.00 0.00 1.78
4654 5330 3.569194 TTACAGTTGCTTCCACCTTGA 57.431 42.857 0.00 0.00 0.00 3.02
4665 5341 4.220602 GCTTCCACCTTGAATACCATGTTT 59.779 41.667 0.00 0.00 0.00 2.83
4669 5345 2.418628 ACCTTGAATACCATGTTTCGCG 59.581 45.455 0.00 0.00 0.00 5.87
4736 5412 2.028930 AGTGATCACGGAACTCTTGGAC 60.029 50.000 19.85 0.00 36.20 4.02
4825 5501 5.263599 TGGAAGTTTAGGATGCATTCATGT 58.736 37.500 7.96 0.00 31.96 3.21
4854 5530 8.243426 GGCATTTTAGAAGTAAACACATGATGA 58.757 33.333 0.00 0.00 0.00 2.92
4960 5637 6.161170 AGAATTGAATCCTACTCCCTCCATTT 59.839 38.462 0.00 0.00 0.00 2.32
4974 5651 9.799106 ACTCCCTCCATTTACAAATATAAGATG 57.201 33.333 0.00 0.00 0.00 2.90
5030 5707 5.658674 CACGTTTTAGTGTGTTTGTTCAC 57.341 39.130 0.00 0.00 37.35 3.18
5057 5734 4.395959 TTGGTCCGAATGTAGTCCATAC 57.604 45.455 0.00 0.00 31.97 2.39
5106 5783 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5195 5872 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
5254 5931 9.708092 AACGAAGGGAGTATTAAATATAGCTTC 57.292 33.333 0.00 0.00 0.00 3.86
5272 5949 3.929610 GCTTCAGTTTAGTGGCAGACTAG 59.070 47.826 0.00 0.00 38.45 2.57
5286 5963 4.500716 GGCAGACTAGAGCTTAGGATTCAC 60.501 50.000 0.00 0.00 0.00 3.18
5301 5978 4.522297 GATTCACCGAATCACTTGCTAC 57.478 45.455 11.00 0.00 45.30 3.58
5359 6036 5.762218 AGAAACCAAGTCTCAGATGAAACAG 59.238 40.000 0.00 0.00 0.00 3.16
5394 6071 3.251972 GGAGCACAGCATAATTCTTAGCC 59.748 47.826 0.00 0.00 0.00 3.93
5587 6280 4.526650 ACATAACCCAACAGGAATGGAAAC 59.473 41.667 0.00 0.00 40.56 2.78
5607 6300 6.418057 AAACTGACCAAATTTATGGCTTCA 57.582 33.333 0.00 0.00 44.75 3.02
5608 6301 5.649782 ACTGACCAAATTTATGGCTTCAG 57.350 39.130 12.19 12.19 43.81 3.02
5784 6478 3.067742 CCAGGATTAAATCAGGCAGCAAG 59.932 47.826 0.00 0.00 0.00 4.01
5794 6488 1.394917 CAGGCAGCAAGTATCGTCAAC 59.605 52.381 0.00 0.00 0.00 3.18
5811 6505 2.094700 TCAACGTCTAGACATCCTGCAC 60.095 50.000 22.37 0.00 0.00 4.57
5812 6506 0.452184 ACGTCTAGACATCCTGCACG 59.548 55.000 22.37 8.33 37.31 5.34
5813 6507 0.867753 CGTCTAGACATCCTGCACGC 60.868 60.000 22.37 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.186200 ATAGAGTGTCAGCCTCGCAA 58.814 50.000 0.00 0.00 34.08 4.85
1 2 1.186200 AATAGAGTGTCAGCCTCGCA 58.814 50.000 0.00 0.00 34.08 5.10
2 3 3.004839 TCATAATAGAGTGTCAGCCTCGC 59.995 47.826 0.00 0.00 34.08 5.03
3 4 4.837896 TCATAATAGAGTGTCAGCCTCG 57.162 45.455 0.00 0.00 34.08 4.63
4 5 6.095432 ACATCATAATAGAGTGTCAGCCTC 57.905 41.667 0.00 0.00 0.00 4.70
5 6 6.491714 AACATCATAATAGAGTGTCAGCCT 57.508 37.500 0.00 0.00 0.00 4.58
49 50 5.495640 CCTTCCCATCTCTTATAGCATTCC 58.504 45.833 0.00 0.00 0.00 3.01
58 59 1.209504 CAACGGCCTTCCCATCTCTTA 59.790 52.381 0.00 0.00 0.00 2.10
88 89 1.546476 AGACTCGCTCGACCAAAGAAT 59.454 47.619 0.00 0.00 0.00 2.40
123 124 1.080366 CGTGTGCGTTAGCCCAGTA 60.080 57.895 0.00 0.00 44.33 2.74
125 126 3.788766 GCGTGTGCGTTAGCCCAG 61.789 66.667 0.00 0.00 44.33 4.45
139 140 4.164087 TGTTGACCGGTGGTGCGT 62.164 61.111 14.63 0.00 35.25 5.24
140 141 3.645975 GTGTTGACCGGTGGTGCG 61.646 66.667 14.63 0.00 35.25 5.34
149 150 0.472471 TTCCCTCCTGTGTGTTGACC 59.528 55.000 0.00 0.00 0.00 4.02
165 166 1.203287 GCCAAGACTCCATTTGCTTCC 59.797 52.381 0.00 0.00 0.00 3.46
197 198 1.559682 GTTCACCTTGAGCCATCCCTA 59.440 52.381 0.00 0.00 0.00 3.53
199 200 0.038166 TGTTCACCTTGAGCCATCCC 59.962 55.000 0.00 0.00 0.00 3.85
212 213 1.153449 TCGCCCCATCGATGTTCAC 60.153 57.895 23.27 9.34 33.02 3.18
238 239 0.608035 TTCAACAAGATCCACCGCCC 60.608 55.000 0.00 0.00 0.00 6.13
243 244 7.147976 GGGCAATATATTTCAACAAGATCCAC 58.852 38.462 0.00 0.00 0.00 4.02
247 248 6.772716 AGACGGGCAATATATTTCAACAAGAT 59.227 34.615 0.00 0.00 0.00 2.40
290 291 5.777802 TGTTTCAGTCAGTTGCTTCAAAAA 58.222 33.333 0.00 0.00 0.00 1.94
320 321 7.118245 CGTGCTCTTGGCTCAAATATCATATTA 59.882 37.037 0.00 0.00 42.39 0.98
331 332 3.043713 CGCGTGCTCTTGGCTCAA 61.044 61.111 0.00 0.00 42.39 3.02
365 503 4.711949 CCCTGCGTGCTCTTGGCT 62.712 66.667 0.00 0.00 42.39 4.75
367 505 2.743928 GACCCTGCGTGCTCTTGG 60.744 66.667 0.00 0.00 0.00 3.61
368 506 1.364626 GATGACCCTGCGTGCTCTTG 61.365 60.000 0.00 0.00 0.00 3.02
370 508 2.581354 GATGACCCTGCGTGCTCT 59.419 61.111 0.00 0.00 0.00 4.09
388 550 3.630312 GCCCACTAGAAGTCAGACTCTAG 59.370 52.174 22.76 22.76 34.78 2.43
389 551 3.622630 GCCCACTAGAAGTCAGACTCTA 58.377 50.000 2.72 6.56 0.00 2.43
390 552 2.452505 GCCCACTAGAAGTCAGACTCT 58.547 52.381 2.72 5.73 0.00 3.24
391 553 1.133407 CGCCCACTAGAAGTCAGACTC 59.867 57.143 2.72 0.00 0.00 3.36
392 554 1.178276 CGCCCACTAGAAGTCAGACT 58.822 55.000 0.00 0.00 0.00 3.24
393 555 0.173708 CCGCCCACTAGAAGTCAGAC 59.826 60.000 0.00 0.00 0.00 3.51
394 556 0.251653 ACCGCCCACTAGAAGTCAGA 60.252 55.000 0.00 0.00 0.00 3.27
395 557 0.108615 CACCGCCCACTAGAAGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
396 558 1.972198 CACCGCCCACTAGAAGTCA 59.028 57.895 0.00 0.00 0.00 3.41
397 559 1.448013 GCACCGCCCACTAGAAGTC 60.448 63.158 0.00 0.00 0.00 3.01
398 560 2.172483 CTGCACCGCCCACTAGAAGT 62.172 60.000 0.00 0.00 0.00 3.01
399 561 1.448540 CTGCACCGCCCACTAGAAG 60.449 63.158 0.00 0.00 0.00 2.85
400 562 2.662596 CTGCACCGCCCACTAGAA 59.337 61.111 0.00 0.00 0.00 2.10
401 563 3.390521 CCTGCACCGCCCACTAGA 61.391 66.667 0.00 0.00 0.00 2.43
409 571 4.389576 CTTCAACGCCTGCACCGC 62.390 66.667 2.19 0.00 0.00 5.68
410 572 1.577328 ATTCTTCAACGCCTGCACCG 61.577 55.000 0.80 0.80 0.00 4.94
411 573 1.448985 TATTCTTCAACGCCTGCACC 58.551 50.000 0.00 0.00 0.00 5.01
412 574 3.126858 TCATTATTCTTCAACGCCTGCAC 59.873 43.478 0.00 0.00 0.00 4.57
413 575 3.342719 TCATTATTCTTCAACGCCTGCA 58.657 40.909 0.00 0.00 0.00 4.41
414 576 3.790123 GCTCATTATTCTTCAACGCCTGC 60.790 47.826 0.00 0.00 0.00 4.85
415 577 3.624861 AGCTCATTATTCTTCAACGCCTG 59.375 43.478 0.00 0.00 0.00 4.85
416 578 3.624861 CAGCTCATTATTCTTCAACGCCT 59.375 43.478 0.00 0.00 0.00 5.52
417 579 3.242870 CCAGCTCATTATTCTTCAACGCC 60.243 47.826 0.00 0.00 0.00 5.68
418 580 3.623060 TCCAGCTCATTATTCTTCAACGC 59.377 43.478 0.00 0.00 0.00 4.84
419 581 5.111989 TCTCCAGCTCATTATTCTTCAACG 58.888 41.667 0.00 0.00 0.00 4.10
420 582 6.344500 TCTCTCCAGCTCATTATTCTTCAAC 58.656 40.000 0.00 0.00 0.00 3.18
421 583 6.550938 TCTCTCCAGCTCATTATTCTTCAA 57.449 37.500 0.00 0.00 0.00 2.69
422 584 6.325804 TGATCTCTCCAGCTCATTATTCTTCA 59.674 38.462 0.00 0.00 0.00 3.02
423 585 6.646240 GTGATCTCTCCAGCTCATTATTCTTC 59.354 42.308 0.00 0.00 0.00 2.87
424 586 6.523840 GTGATCTCTCCAGCTCATTATTCTT 58.476 40.000 0.00 0.00 0.00 2.52
425 587 5.278907 CGTGATCTCTCCAGCTCATTATTCT 60.279 44.000 0.00 0.00 0.00 2.40
426 588 4.922692 CGTGATCTCTCCAGCTCATTATTC 59.077 45.833 0.00 0.00 0.00 1.75
427 589 4.586421 TCGTGATCTCTCCAGCTCATTATT 59.414 41.667 0.00 0.00 0.00 1.40
428 590 4.148079 TCGTGATCTCTCCAGCTCATTAT 58.852 43.478 0.00 0.00 0.00 1.28
429 591 3.555966 TCGTGATCTCTCCAGCTCATTA 58.444 45.455 0.00 0.00 0.00 1.90
430 592 2.382882 TCGTGATCTCTCCAGCTCATT 58.617 47.619 0.00 0.00 0.00 2.57
431 593 2.064434 TCGTGATCTCTCCAGCTCAT 57.936 50.000 0.00 0.00 0.00 2.90
432 594 2.064434 ATCGTGATCTCTCCAGCTCA 57.936 50.000 0.00 0.00 0.00 4.26
433 595 3.119531 CCATATCGTGATCTCTCCAGCTC 60.120 52.174 0.00 0.00 0.00 4.09
434 596 2.824936 CCATATCGTGATCTCTCCAGCT 59.175 50.000 0.00 0.00 0.00 4.24
435 597 2.673610 GCCATATCGTGATCTCTCCAGC 60.674 54.545 0.00 0.00 0.00 4.85
436 598 2.824936 AGCCATATCGTGATCTCTCCAG 59.175 50.000 0.00 0.00 0.00 3.86
437 599 2.822561 GAGCCATATCGTGATCTCTCCA 59.177 50.000 0.00 0.00 0.00 3.86
438 600 3.088532 AGAGCCATATCGTGATCTCTCC 58.911 50.000 0.00 0.00 34.61 3.71
439 601 4.009675 AGAGAGCCATATCGTGATCTCTC 58.990 47.826 14.07 14.07 42.36 3.20
440 602 4.009675 GAGAGAGCCATATCGTGATCTCT 58.990 47.826 11.85 11.85 45.54 3.10
441 603 3.181511 CGAGAGAGCCATATCGTGATCTC 60.182 52.174 0.00 0.00 39.14 2.75
442 604 2.746904 CGAGAGAGCCATATCGTGATCT 59.253 50.000 0.00 0.00 0.00 2.75
443 605 2.486203 ACGAGAGAGCCATATCGTGATC 59.514 50.000 7.54 0.00 45.83 2.92
444 606 2.509569 ACGAGAGAGCCATATCGTGAT 58.490 47.619 7.54 0.00 45.83 3.06
445 607 1.968704 ACGAGAGAGCCATATCGTGA 58.031 50.000 7.54 0.00 45.83 4.35
448 610 2.351253 CCTTCACGAGAGAGCCATATCG 60.351 54.545 1.66 1.66 40.86 2.92
449 611 2.887783 TCCTTCACGAGAGAGCCATATC 59.112 50.000 0.00 0.00 0.00 1.63
450 612 2.890311 CTCCTTCACGAGAGAGCCATAT 59.110 50.000 0.00 0.00 31.43 1.78
451 613 2.092375 TCTCCTTCACGAGAGAGCCATA 60.092 50.000 0.00 0.00 34.23 2.74
452 614 1.110442 CTCCTTCACGAGAGAGCCAT 58.890 55.000 0.00 0.00 31.43 4.40
453 615 0.038310 TCTCCTTCACGAGAGAGCCA 59.962 55.000 0.00 0.00 34.23 4.75
454 616 1.336755 GATCTCCTTCACGAGAGAGCC 59.663 57.143 0.00 0.00 42.06 4.70
455 617 2.020720 TGATCTCCTTCACGAGAGAGC 58.979 52.381 0.00 0.00 44.03 4.09
456 618 4.397730 TCTTTGATCTCCTTCACGAGAGAG 59.602 45.833 0.00 0.00 42.06 3.20
457 619 4.336280 TCTTTGATCTCCTTCACGAGAGA 58.664 43.478 0.00 0.00 42.06 3.10
458 620 4.671377 CTCTTTGATCTCCTTCACGAGAG 58.329 47.826 0.00 0.00 42.06 3.20
459 621 3.119316 GCTCTTTGATCTCCTTCACGAGA 60.119 47.826 0.00 0.00 42.93 4.04
460 622 3.119173 AGCTCTTTGATCTCCTTCACGAG 60.119 47.826 0.00 0.00 31.46 4.18
461 623 2.828520 AGCTCTTTGATCTCCTTCACGA 59.171 45.455 0.00 0.00 0.00 4.35
462 624 3.244033 AGCTCTTTGATCTCCTTCACG 57.756 47.619 0.00 0.00 0.00 4.35
463 625 5.337578 AGTAGCTCTTTGATCTCCTTCAC 57.662 43.478 0.00 0.00 0.00 3.18
464 626 4.097135 CGAGTAGCTCTTTGATCTCCTTCA 59.903 45.833 0.00 0.00 0.00 3.02
465 627 4.499019 CCGAGTAGCTCTTTGATCTCCTTC 60.499 50.000 0.00 0.00 0.00 3.46
466 628 3.383185 CCGAGTAGCTCTTTGATCTCCTT 59.617 47.826 0.00 0.00 0.00 3.36
467 629 2.955660 CCGAGTAGCTCTTTGATCTCCT 59.044 50.000 0.00 0.00 0.00 3.69
468 630 2.544903 GCCGAGTAGCTCTTTGATCTCC 60.545 54.545 0.00 0.00 0.00 3.71
469 631 2.099921 TGCCGAGTAGCTCTTTGATCTC 59.900 50.000 0.00 0.00 0.00 2.75
487 649 2.161609 CCTTAAACTCATCCAACGTGCC 59.838 50.000 0.00 0.00 0.00 5.01
488 650 2.812011 ACCTTAAACTCATCCAACGTGC 59.188 45.455 0.00 0.00 0.00 5.34
490 652 3.181448 ACCACCTTAAACTCATCCAACGT 60.181 43.478 0.00 0.00 0.00 3.99
493 655 4.447138 ACACCACCTTAAACTCATCCAA 57.553 40.909 0.00 0.00 0.00 3.53
605 767 6.183360 GCAATAATGTCACGAATACTATCCGG 60.183 42.308 0.00 0.00 0.00 5.14
608 770 6.669977 GCCGCAATAATGTCACGAATACTATC 60.670 42.308 0.00 0.00 0.00 2.08
609 771 5.120208 GCCGCAATAATGTCACGAATACTAT 59.880 40.000 0.00 0.00 0.00 2.12
610 772 4.446385 GCCGCAATAATGTCACGAATACTA 59.554 41.667 0.00 0.00 0.00 1.82
611 773 3.247648 GCCGCAATAATGTCACGAATACT 59.752 43.478 0.00 0.00 0.00 2.12
612 774 3.247648 AGCCGCAATAATGTCACGAATAC 59.752 43.478 0.00 0.00 0.00 1.89
613 775 3.247411 CAGCCGCAATAATGTCACGAATA 59.753 43.478 0.00 0.00 0.00 1.75
614 776 2.032054 CAGCCGCAATAATGTCACGAAT 59.968 45.455 0.00 0.00 0.00 3.34
615 777 1.396648 CAGCCGCAATAATGTCACGAA 59.603 47.619 0.00 0.00 0.00 3.85
616 778 1.006086 CAGCCGCAATAATGTCACGA 58.994 50.000 0.00 0.00 0.00 4.35
617 779 1.006086 TCAGCCGCAATAATGTCACG 58.994 50.000 0.00 0.00 0.00 4.35
618 780 3.698029 ATTCAGCCGCAATAATGTCAC 57.302 42.857 0.00 0.00 0.00 3.67
619 781 4.881273 ACTAATTCAGCCGCAATAATGTCA 59.119 37.500 0.00 0.00 0.00 3.58
620 782 5.424121 ACTAATTCAGCCGCAATAATGTC 57.576 39.130 0.00 0.00 0.00 3.06
621 783 4.024893 CGACTAATTCAGCCGCAATAATGT 60.025 41.667 0.00 0.00 0.00 2.71
622 784 4.457810 CGACTAATTCAGCCGCAATAATG 58.542 43.478 0.00 0.00 0.00 1.90
623 785 4.732285 CGACTAATTCAGCCGCAATAAT 57.268 40.909 0.00 0.00 0.00 1.28
630 792 0.297820 GTTCGCGACTAATTCAGCCG 59.702 55.000 9.15 0.00 32.57 5.52
645 807 6.417191 TGCTGCCTTTTATTAAGTAGTTCG 57.583 37.500 0.00 0.00 0.00 3.95
750 912 9.959749 AAACGTGTATGTGAAGAAATGTTAATT 57.040 25.926 0.00 0.00 0.00 1.40
918 1083 8.953990 GTGTGTTTGAAAAAGATACATGTGTAC 58.046 33.333 9.11 0.00 32.72 2.90
993 1159 7.593644 GGTTGCTCGTGTATTTAAAAAGATGTT 59.406 33.333 0.00 0.00 0.00 2.71
1001 1167 7.481642 TGAAAAAGGTTGCTCGTGTATTTAAA 58.518 30.769 0.00 0.00 0.00 1.52
1011 1177 3.506810 TGTGTTTGAAAAAGGTTGCTCG 58.493 40.909 0.00 0.00 0.00 5.03
1013 1179 4.111916 CGATGTGTTTGAAAAAGGTTGCT 58.888 39.130 0.00 0.00 0.00 3.91
1014 1180 3.862845 ACGATGTGTTTGAAAAAGGTTGC 59.137 39.130 0.00 0.00 0.00 4.17
1086 1252 9.325150 CATGCATTTTGAATCTTTTTGAATGAC 57.675 29.630 0.00 0.00 0.00 3.06
1087 1253 9.274206 TCATGCATTTTGAATCTTTTTGAATGA 57.726 25.926 0.00 0.00 0.00 2.57
1217 1383 9.434420 TTTCATGTTCTTTTTGTTCTTCATGTT 57.566 25.926 0.00 0.00 34.82 2.71
1219 1385 9.693157 GTTTTCATGTTCTTTTTGTTCTTCATG 57.307 29.630 0.00 0.00 34.62 3.07
1228 1398 6.310224 ACAACCTCGTTTTCATGTTCTTTTTG 59.690 34.615 0.00 0.00 0.00 2.44
1240 1410 0.591659 GAGGCCACAACCTCGTTTTC 59.408 55.000 5.01 0.00 46.52 2.29
1303 1473 2.835027 AGACAACGAGACAAAGGGAAC 58.165 47.619 0.00 0.00 0.00 3.62
1304 1474 3.202906 CAAGACAACGAGACAAAGGGAA 58.797 45.455 0.00 0.00 0.00 3.97
1307 1477 2.802816 CTCCAAGACAACGAGACAAAGG 59.197 50.000 0.00 0.00 0.00 3.11
1308 1478 3.717707 TCTCCAAGACAACGAGACAAAG 58.282 45.455 0.00 0.00 0.00 2.77
1309 1479 3.812156 TCTCCAAGACAACGAGACAAA 57.188 42.857 0.00 0.00 0.00 2.83
1320 1490 1.139853 CTGCCCCTATGTCTCCAAGAC 59.860 57.143 0.08 0.08 45.26 3.01
1321 1491 1.500474 CTGCCCCTATGTCTCCAAGA 58.500 55.000 0.00 0.00 0.00 3.02
1322 1492 0.179034 GCTGCCCCTATGTCTCCAAG 60.179 60.000 0.00 0.00 0.00 3.61
1323 1493 1.915228 GCTGCCCCTATGTCTCCAA 59.085 57.895 0.00 0.00 0.00 3.53
1324 1494 2.434843 CGCTGCCCCTATGTCTCCA 61.435 63.158 0.00 0.00 0.00 3.86
1346 1531 1.656818 ATCGCGATGTTGCCAAAGGG 61.657 55.000 23.04 0.00 37.18 3.95
1347 1532 0.248215 GATCGCGATGTTGCCAAAGG 60.248 55.000 29.09 0.00 0.00 3.11
1348 1533 0.248215 GGATCGCGATGTTGCCAAAG 60.248 55.000 29.09 0.00 0.00 2.77
1349 1534 1.800032 GGATCGCGATGTTGCCAAA 59.200 52.632 29.09 0.00 0.00 3.28
1350 1535 2.460275 CGGATCGCGATGTTGCCAA 61.460 57.895 29.09 0.00 0.00 4.52
1351 1536 2.889988 CGGATCGCGATGTTGCCA 60.890 61.111 29.09 0.00 0.00 4.92
1352 1537 4.299316 GCGGATCGCGATGTTGCC 62.299 66.667 29.09 19.89 44.55 4.52
1368 1553 0.591659 GAAGTGGGGTCGAACAAAGC 59.408 55.000 1.31 0.00 0.00 3.51
1374 1559 1.152204 TCAGGGAAGTGGGGTCGAA 60.152 57.895 0.00 0.00 0.00 3.71
1379 1564 1.277580 ATGCTCTCAGGGAAGTGGGG 61.278 60.000 0.00 0.00 0.00 4.96
1391 1576 2.941720 GTCAATGGTTGGAGATGCTCTC 59.058 50.000 5.01 5.01 42.66 3.20
1404 1589 0.921896 CTCATGGAGGGGTCAATGGT 59.078 55.000 0.00 0.00 0.00 3.55
1416 1603 2.622942 GGCGATTTTTATGCCTCATGGA 59.377 45.455 0.00 0.00 45.40 3.41
1420 1607 0.380378 GCGGCGATTTTTATGCCTCA 59.620 50.000 12.98 0.00 46.67 3.86
1562 1749 1.000955 GGCCGATTCACACCGATATCT 59.999 52.381 0.34 0.00 0.00 1.98
1571 1758 2.849942 CTGAATATGGGCCGATTCACA 58.150 47.619 22.88 9.70 37.19 3.58
1573 1760 1.877680 CGCTGAATATGGGCCGATTCA 60.878 52.381 24.28 24.28 39.24 2.57
1590 1777 0.604243 TTATGTTGCCGAACCACGCT 60.604 50.000 0.00 0.00 41.07 5.07
1818 2023 1.228245 GTGCTCCCCTGTCTTTGCA 60.228 57.895 0.00 0.00 0.00 4.08
1958 2590 2.336088 CGTTTGCTTGGCAGTGGG 59.664 61.111 0.00 0.00 40.61 4.61
1961 2593 1.447317 CTGTCCGTTTGCTTGGCAGT 61.447 55.000 0.00 0.00 40.61 4.40
2026 2658 4.282703 ACAGAATGCAGCAAGAGGATTTTT 59.717 37.500 0.00 0.00 42.53 1.94
2120 2752 5.376625 AGTGTTTCTACAAATTCTGCTGGA 58.623 37.500 0.00 0.00 35.69 3.86
2123 2755 6.942532 TTGAGTGTTTCTACAAATTCTGCT 57.057 33.333 0.00 0.00 35.69 4.24
2162 2794 0.318360 CGACGACTATGGGCGCATAA 60.318 55.000 22.18 8.43 0.00 1.90
2163 2795 1.167781 TCGACGACTATGGGCGCATA 61.168 55.000 20.91 20.91 0.00 3.14
2183 2815 1.832912 GGAGCTCCCGGTGATTCAT 59.167 57.895 23.19 0.00 0.00 2.57
2223 2855 0.439985 CAATCCAGAAGTGCACGACG 59.560 55.000 12.01 1.29 0.00 5.12
2273 2905 3.059597 CGACAACTACTTCAAGTGCAAGG 60.060 47.826 0.00 0.00 0.00 3.61
2354 2987 2.097104 GCACGTCGAGAAAACATTTCGA 60.097 45.455 0.00 0.00 40.64 3.71
2370 3003 2.108514 CCGATGCTCCATTGCACGT 61.109 57.895 0.00 0.00 46.33 4.49
2390 3023 3.564644 GCATGCTCTACTCCGACTACTAA 59.435 47.826 11.37 0.00 0.00 2.24
2391 3024 3.139850 GCATGCTCTACTCCGACTACTA 58.860 50.000 11.37 0.00 0.00 1.82
2505 3139 3.521529 ATGATGCTCGCCGCCCTAC 62.522 63.158 0.00 0.00 38.05 3.18
2506 3140 3.233980 ATGATGCTCGCCGCCCTA 61.234 61.111 0.00 0.00 38.05 3.53
2520 3154 0.757512 GGAGCAGGAGCATCTCATGA 59.242 55.000 11.99 0.00 43.80 3.07
2760 3397 4.375272 CACCACAGCTAGATAGGACATTG 58.625 47.826 5.73 0.00 0.00 2.82
2765 3402 1.291033 ACCCACCACAGCTAGATAGGA 59.709 52.381 5.73 0.00 0.00 2.94
2854 3499 3.129287 ACTGTCAGGCAAAAAGTCAAGTG 59.871 43.478 4.53 0.00 0.00 3.16
2855 3500 3.129287 CACTGTCAGGCAAAAAGTCAAGT 59.871 43.478 4.53 0.00 0.00 3.16
2957 3607 1.102809 GGTTCGGTCCGTTTTTGGGT 61.103 55.000 11.88 0.00 0.00 4.51
3139 3798 1.439228 CGGTCGAGCATCATCCAGT 59.561 57.895 15.89 0.00 33.17 4.00
3205 3864 0.753262 GCTGGCCGAGAAGGAATAGA 59.247 55.000 0.00 0.00 45.00 1.98
3241 3900 2.444700 GAAAGCGACGGTGAAGGGGA 62.445 60.000 0.00 0.00 0.00 4.81
3332 3991 0.456142 CCACGAGATCGCACGAAGAA 60.456 55.000 14.50 0.00 44.43 2.52
3409 4068 2.372837 GGGTAAACTGGGGACTTGTACA 59.627 50.000 0.00 0.00 0.00 2.90
3428 4087 0.036010 AGATGAAGTGTTCCTGCGGG 60.036 55.000 4.71 4.71 0.00 6.13
3479 4138 1.086634 GGATCTTGTGGAGCGTCAGC 61.087 60.000 0.00 0.00 45.58 4.26
3484 4143 0.816825 CATGGGGATCTTGTGGAGCG 60.817 60.000 0.00 0.00 0.00 5.03
3500 4159 0.793861 CCAACGGTTCCGTACACATG 59.206 55.000 17.21 11.00 42.15 3.21
3620 4279 2.545731 GGTCTACTTAAGCTCAGCTGC 58.454 52.381 9.47 0.00 39.62 5.25
3654 4313 0.723414 CACAGGTCAGCTTGCATACG 59.277 55.000 0.00 0.00 0.00 3.06
3680 4339 0.033504 AGTTGTGTACACTGGAGCGG 59.966 55.000 25.60 0.00 0.00 5.52
3864 4523 3.092301 GGTAAGAGATTGCAGGCCTTTT 58.908 45.455 0.00 0.00 0.00 2.27
3875 4534 8.689972 CAAATAGGCAATTGAAGGTAAGAGATT 58.310 33.333 10.34 0.00 0.00 2.40
4051 4710 5.007626 GTCATCAAAGCATAGCGGTTGATAA 59.992 40.000 17.46 6.82 42.07 1.75
4082 4741 3.797507 AAGGTGCCACAGCCCACAG 62.798 63.158 0.00 0.00 38.69 3.66
4083 4742 3.819652 AAGGTGCCACAGCCCACA 61.820 61.111 0.00 0.00 38.69 4.17
4084 4743 3.297620 CAAGGTGCCACAGCCCAC 61.298 66.667 0.00 0.00 38.69 4.61
4085 4744 3.497115 TCAAGGTGCCACAGCCCA 61.497 61.111 0.00 0.00 38.69 5.36
4086 4745 2.983725 AAGTCAAGGTGCCACAGCCC 62.984 60.000 0.00 0.00 38.69 5.19
4087 4746 1.529244 AAGTCAAGGTGCCACAGCC 60.529 57.895 0.00 0.00 38.69 4.85
4117 4776 5.997746 AGTCCAATTCAGAAGATTTGACGAA 59.002 36.000 0.00 0.00 37.32 3.85
4147 4806 3.586618 AGAGCTTGAGATGGAGAGGTTTT 59.413 43.478 0.00 0.00 0.00 2.43
4221 4880 5.239525 CGATTCCATCCCCATTTTCTTAGAC 59.760 44.000 0.00 0.00 0.00 2.59
4342 5002 3.372954 GACTTTCGTCTGACCATATCCG 58.627 50.000 1.55 0.00 37.19 4.18
4401 5061 0.371645 CTGGCGCGATTGAAGAACTC 59.628 55.000 12.10 0.00 0.00 3.01
4403 5063 1.298859 ACCTGGCGCGATTGAAGAAC 61.299 55.000 12.10 0.00 0.00 3.01
4416 5076 0.727398 GCGAGAACAACATACCTGGC 59.273 55.000 0.00 0.00 0.00 4.85
4566 5242 2.140717 GTGTTGTTAGCCGCTAAGTGT 58.859 47.619 13.24 0.00 0.00 3.55
4599 5275 7.330208 GCCAAGAAATGCATATTTATTAGCCTG 59.670 37.037 0.00 0.00 36.66 4.85
4600 5276 7.234166 AGCCAAGAAATGCATATTTATTAGCCT 59.766 33.333 0.00 0.00 40.53 4.58
4601 5277 7.330208 CAGCCAAGAAATGCATATTTATTAGCC 59.670 37.037 0.00 0.00 40.53 3.93
4602 5278 7.869429 ACAGCCAAGAAATGCATATTTATTAGC 59.131 33.333 0.00 0.88 40.20 3.09
4603 5279 9.754382 AACAGCCAAGAAATGCATATTTATTAG 57.246 29.630 0.00 0.00 36.00 1.73
4604 5280 9.531942 CAACAGCCAAGAAATGCATATTTATTA 57.468 29.630 0.00 0.00 36.00 0.98
4605 5281 7.011669 GCAACAGCCAAGAAATGCATATTTATT 59.988 33.333 0.00 0.00 38.01 1.40
4606 5282 6.480981 GCAACAGCCAAGAAATGCATATTTAT 59.519 34.615 0.00 0.00 36.66 1.40
4607 5283 5.811613 GCAACAGCCAAGAAATGCATATTTA 59.188 36.000 0.00 0.00 36.66 1.40
4608 5284 4.632688 GCAACAGCCAAGAAATGCATATTT 59.367 37.500 0.00 0.00 39.16 1.40
4609 5285 4.081309 AGCAACAGCCAAGAAATGCATATT 60.081 37.500 0.00 0.00 36.30 1.28
4610 5286 3.449737 AGCAACAGCCAAGAAATGCATAT 59.550 39.130 0.00 0.00 36.30 1.78
4611 5287 2.827322 AGCAACAGCCAAGAAATGCATA 59.173 40.909 0.00 0.00 36.30 3.14
4612 5288 1.621814 AGCAACAGCCAAGAAATGCAT 59.378 42.857 0.00 0.00 36.30 3.96
4613 5289 1.042229 AGCAACAGCCAAGAAATGCA 58.958 45.000 0.00 0.00 36.30 3.96
4614 5290 2.159327 AAGCAACAGCCAAGAAATGC 57.841 45.000 0.00 0.00 0.00 3.56
4654 5330 2.814919 TCCAAACGCGAAACATGGTATT 59.185 40.909 15.93 0.00 32.90 1.89
4665 5341 3.857052 AGTTCAATCTATCCAAACGCGA 58.143 40.909 15.93 0.00 0.00 5.87
4669 5345 7.439655 AGCGATTCTAGTTCAATCTATCCAAAC 59.560 37.037 0.00 0.00 0.00 2.93
4736 5412 3.313012 TGTACTCAGTGGATTCGGTTG 57.687 47.619 0.00 0.00 0.00 3.77
4825 5501 7.446931 TCATGTGTTTACTTCTAAAATGCCTGA 59.553 33.333 0.00 0.00 0.00 3.86
4854 5530 6.153340 AGGTTAGCATAAACTTGATGTTGCAT 59.847 34.615 0.00 0.00 39.13 3.96
4942 5619 6.652205 TTTGTAAATGGAGGGAGTAGGATT 57.348 37.500 0.00 0.00 0.00 3.01
5030 5707 4.332819 GGACTACATTCGGACCAAAATGAG 59.667 45.833 18.77 14.27 36.57 2.90
5254 5931 3.194542 AGCTCTAGTCTGCCACTAAACTG 59.805 47.826 0.00 0.00 37.13 3.16
5272 5949 3.804873 GTGATTCGGTGAATCCTAAGCTC 59.195 47.826 14.94 0.00 45.37 4.09
5286 5963 2.009774 CAAGGGTAGCAAGTGATTCGG 58.990 52.381 0.00 0.00 0.00 4.30
5301 5978 3.274288 GACTCCATTAGCAAGACAAGGG 58.726 50.000 0.00 0.00 0.00 3.95
5394 6071 6.590292 AGTGAATATAGTTGTGACCTCGTTTG 59.410 38.462 0.00 0.00 0.00 2.93
5532 6225 2.436115 GCGGAAGGCCTGTGGTAC 60.436 66.667 5.69 0.00 34.80 3.34
5536 6229 1.372087 GAAGATGCGGAAGGCCTGTG 61.372 60.000 5.69 0.00 42.61 3.66
5559 6252 5.221621 CCATTCCTGTTGGGTTATGTGTTTT 60.222 40.000 0.00 0.00 36.25 2.43
5587 6280 5.416952 AGTCTGAAGCCATAAATTTGGTCAG 59.583 40.000 0.00 5.82 39.51 3.51
5607 6300 8.655901 AGTCTAAAATTCAGAGAGGAAAAGTCT 58.344 33.333 0.00 0.00 0.00 3.24
5608 6301 8.840833 AGTCTAAAATTCAGAGAGGAAAAGTC 57.159 34.615 0.00 0.00 0.00 3.01
5744 6437 0.102300 GGCGTCTTGTTTGCACCTTT 59.898 50.000 0.00 0.00 0.00 3.11
5784 6478 4.272991 AGGATGTCTAGACGTTGACGATAC 59.727 45.833 18.54 5.25 43.02 2.24
5794 6488 0.867753 GCGTGCAGGATGTCTAGACG 60.868 60.000 17.85 4.49 39.31 4.18
5834 6529 6.176183 AGTGCATCAGATAGCTAGTGTTTTT 58.824 36.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.