Multiple sequence alignment - TraesCS6B01G313900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G313900 chr6B 100.000 3974 0 0 1 3974 561699932 561703905 0.000000e+00 7339.0
1 TraesCS6B01G313900 chr6D 96.192 2626 78 15 798 3422 375028285 375030889 0.000000e+00 4276.0
2 TraesCS6B01G313900 chr6D 84.685 666 34 25 44 671 375027641 375028276 1.580000e-168 603.0
3 TraesCS6B01G313900 chr6D 93.514 185 11 1 3469 3652 375033650 375033834 1.410000e-69 274.0
4 TraesCS6B01G313900 chr6D 83.871 93 1 2 3759 3849 375089435 375089515 4.260000e-10 76.8
5 TraesCS6B01G313900 chr6A 95.641 2615 89 19 798 3408 516414239 516416832 0.000000e+00 4174.0
6 TraesCS6B01G313900 chr6A 84.434 636 32 16 69 671 516413630 516414231 7.460000e-157 564.0
7 TraesCS6B01G313900 chr6A 90.598 351 29 3 3397 3746 516416856 516417203 2.800000e-126 462.0
8 TraesCS6B01G313900 chr7A 75.625 1920 409 48 1088 2970 214435422 214433525 0.000000e+00 898.0
9 TraesCS6B01G313900 chr7D 75.495 1918 415 44 1088 2970 202058420 202056523 0.000000e+00 887.0
10 TraesCS6B01G313900 chr7B 75.429 1921 411 49 1088 2970 165532207 165530310 0.000000e+00 876.0
11 TraesCS6B01G313900 chrUn 98.969 97 0 1 693 789 141680815 141680910 5.280000e-39 172.0
12 TraesCS6B01G313900 chr2B 97.087 103 2 1 693 794 66994713 66994815 5.280000e-39 172.0
13 TraesCS6B01G313900 chr3D 94.495 109 2 3 689 794 571465429 571465536 8.840000e-37 165.0
14 TraesCS6B01G313900 chr3D 94.495 109 2 3 689 794 579494891 579494784 8.840000e-37 165.0
15 TraesCS6B01G313900 chr3D 90.244 123 10 1 693 815 500128947 500128827 4.110000e-35 159.0
16 TraesCS6B01G313900 chr3D 90.833 120 7 3 669 785 207824149 207824267 1.480000e-34 158.0
17 TraesCS6B01G313900 chr3D 100.000 28 0 0 665 692 13285731 13285704 7.000000e-03 52.8
18 TraesCS6B01G313900 chr3B 89.474 133 10 4 658 789 416577617 416577746 8.840000e-37 165.0
19 TraesCS6B01G313900 chr3B 90.756 119 9 2 668 785 408630860 408630977 1.480000e-34 158.0
20 TraesCS6B01G313900 chr4D 91.453 117 8 2 670 785 486775803 486775918 4.110000e-35 159.0
21 TraesCS6B01G313900 chr4D 100.000 28 0 0 665 692 55271955 55271982 7.000000e-03 52.8
22 TraesCS6B01G313900 chr1A 100.000 31 0 0 662 692 336482530 336482500 1.540000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G313900 chr6B 561699932 561703905 3973 False 7339.000000 7339 100.000000 1 3974 1 chr6B.!!$F1 3973
1 TraesCS6B01G313900 chr6D 375027641 375033834 6193 False 1717.666667 4276 91.463667 44 3652 3 chr6D.!!$F2 3608
2 TraesCS6B01G313900 chr6A 516413630 516417203 3573 False 1733.333333 4174 90.224333 69 3746 3 chr6A.!!$F1 3677
3 TraesCS6B01G313900 chr7A 214433525 214435422 1897 True 898.000000 898 75.625000 1088 2970 1 chr7A.!!$R1 1882
4 TraesCS6B01G313900 chr7D 202056523 202058420 1897 True 887.000000 887 75.495000 1088 2970 1 chr7D.!!$R1 1882
5 TraesCS6B01G313900 chr7B 165530310 165532207 1897 True 876.000000 876 75.429000 1088 2970 1 chr7B.!!$R1 1882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1059 0.169009 GTCCAAGGAATCTGTTGCGC 59.831 55.0 0.0 0.0 0.0 6.09 F
1731 1805 0.108585 TTGACTCTGTGAACTGCCCC 59.891 55.0 0.0 0.0 0.0 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 1913 2.171448 AGCACCATCCATCTTCAGGTAC 59.829 50.0 0.0 0.0 0.00 3.34 R
3493 6330 0.395586 ACCAGCAACCACAAAGCTCA 60.396 50.0 0.0 0.0 36.26 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.940430 ATCCTCCAAATTCAAATGGAAACT 57.060 33.333 0.00 0.00 44.77 2.66
168 170 4.358851 CCTGCTGTATTCTTCTCTTCTCG 58.641 47.826 0.00 0.00 0.00 4.04
198 200 4.889112 AGGGCGGACGGAGCGATA 62.889 66.667 0.00 0.00 35.00 2.92
199 201 4.344474 GGGCGGACGGAGCGATAG 62.344 72.222 0.00 0.00 35.00 2.08
200 202 3.285215 GGCGGACGGAGCGATAGA 61.285 66.667 0.00 0.00 39.76 1.98
201 203 2.252855 GCGGACGGAGCGATAGAG 59.747 66.667 0.00 0.00 39.76 2.43
202 204 2.252346 GCGGACGGAGCGATAGAGA 61.252 63.158 0.00 0.00 39.76 3.10
203 205 1.863491 CGGACGGAGCGATAGAGAG 59.137 63.158 0.00 0.00 39.76 3.20
204 206 0.600518 CGGACGGAGCGATAGAGAGA 60.601 60.000 0.00 0.00 39.76 3.10
205 207 1.153353 GGACGGAGCGATAGAGAGAG 58.847 60.000 0.00 0.00 39.76 3.20
206 208 1.270412 GGACGGAGCGATAGAGAGAGA 60.270 57.143 0.00 0.00 39.76 3.10
207 209 2.066262 GACGGAGCGATAGAGAGAGAG 58.934 57.143 0.00 0.00 39.76 3.20
208 210 1.689813 ACGGAGCGATAGAGAGAGAGA 59.310 52.381 0.00 0.00 39.76 3.10
209 211 2.288825 ACGGAGCGATAGAGAGAGAGAG 60.289 54.545 0.00 0.00 39.76 3.20
210 212 2.029380 CGGAGCGATAGAGAGAGAGAGA 60.029 54.545 0.00 0.00 39.76 3.10
211 213 3.589988 GGAGCGATAGAGAGAGAGAGAG 58.410 54.545 0.00 0.00 39.76 3.20
212 214 3.258372 GGAGCGATAGAGAGAGAGAGAGA 59.742 52.174 0.00 0.00 39.76 3.10
213 215 4.489810 GAGCGATAGAGAGAGAGAGAGAG 58.510 52.174 0.00 0.00 39.76 3.20
214 216 4.152647 AGCGATAGAGAGAGAGAGAGAGA 58.847 47.826 0.00 0.00 39.76 3.10
215 217 4.219507 AGCGATAGAGAGAGAGAGAGAGAG 59.780 50.000 0.00 0.00 39.76 3.20
256 258 4.493747 CTCGGGGTCGGAAGCGTC 62.494 72.222 0.00 0.00 36.95 5.19
278 284 0.893270 CCATGTTTTGACCTCGCCCA 60.893 55.000 0.00 0.00 0.00 5.36
338 344 4.491409 GAGCGCCCCTTCCCTTCC 62.491 72.222 2.29 0.00 0.00 3.46
341 347 3.339093 CGCCCCTTCCCTTCCCTT 61.339 66.667 0.00 0.00 0.00 3.95
467 504 4.093998 TCTGTCTGTCGGTATAGTTCGTTC 59.906 45.833 0.00 0.00 0.00 3.95
481 519 1.153628 CGTTCTCCCCGCTGGTTAG 60.154 63.158 0.00 0.00 34.77 2.34
485 523 0.834687 TCTCCCCGCTGGTTAGTGTT 60.835 55.000 0.00 0.00 34.77 3.32
570 631 0.387622 TCGGTCGATCACGTGTTTCC 60.388 55.000 16.51 10.90 40.69 3.13
571 632 1.349259 CGGTCGATCACGTGTTTCCC 61.349 60.000 16.51 9.36 40.69 3.97
581 642 1.822371 ACGTGTTTCCCTTGCTTGTTT 59.178 42.857 0.00 0.00 0.00 2.83
584 645 2.093711 GTGTTTCCCTTGCTTGTTTGGT 60.094 45.455 0.00 0.00 0.00 3.67
625 686 5.424573 AGGAGTATTGGTCCTTACTTGGTAC 59.575 44.000 6.54 0.00 42.12 3.34
626 687 5.424573 GGAGTATTGGTCCTTACTTGGTACT 59.575 44.000 6.54 0.00 0.00 2.73
627 688 6.070366 GGAGTATTGGTCCTTACTTGGTACTT 60.070 42.308 6.54 0.00 0.00 2.24
664 726 1.322338 GATTTCGTGCATGCATGTTGC 59.678 47.619 33.08 19.72 45.29 4.17
671 733 1.202279 TGCATGCATGTTGCCGATTAC 60.202 47.619 26.79 7.53 44.23 1.89
673 735 2.855953 GCATGCATGTTGCCGATTACTC 60.856 50.000 26.79 2.60 44.23 2.59
674 736 1.378531 TGCATGTTGCCGATTACTCC 58.621 50.000 0.00 0.00 44.23 3.85
675 737 0.663153 GCATGTTGCCGATTACTCCC 59.337 55.000 0.00 0.00 37.42 4.30
676 738 1.747206 GCATGTTGCCGATTACTCCCT 60.747 52.381 0.00 0.00 37.42 4.20
677 739 2.213499 CATGTTGCCGATTACTCCCTC 58.787 52.381 0.00 0.00 0.00 4.30
678 740 0.539986 TGTTGCCGATTACTCCCTCC 59.460 55.000 0.00 0.00 0.00 4.30
679 741 0.529992 GTTGCCGATTACTCCCTCCG 60.530 60.000 0.00 0.00 0.00 4.63
680 742 0.974010 TTGCCGATTACTCCCTCCGT 60.974 55.000 0.00 0.00 0.00 4.69
681 743 0.974010 TGCCGATTACTCCCTCCGTT 60.974 55.000 0.00 0.00 0.00 4.44
682 744 0.249363 GCCGATTACTCCCTCCGTTC 60.249 60.000 0.00 0.00 0.00 3.95
683 745 0.388294 CCGATTACTCCCTCCGTTCC 59.612 60.000 0.00 0.00 0.00 3.62
684 746 1.400737 CGATTACTCCCTCCGTTCCT 58.599 55.000 0.00 0.00 0.00 3.36
685 747 2.579873 CGATTACTCCCTCCGTTCCTA 58.420 52.381 0.00 0.00 0.00 2.94
686 748 2.954318 CGATTACTCCCTCCGTTCCTAA 59.046 50.000 0.00 0.00 0.00 2.69
687 749 3.382546 CGATTACTCCCTCCGTTCCTAAA 59.617 47.826 0.00 0.00 0.00 1.85
688 750 4.038883 CGATTACTCCCTCCGTTCCTAAAT 59.961 45.833 0.00 0.00 0.00 1.40
689 751 5.242393 CGATTACTCCCTCCGTTCCTAAATA 59.758 44.000 0.00 0.00 0.00 1.40
690 752 6.071503 CGATTACTCCCTCCGTTCCTAAATAT 60.072 42.308 0.00 0.00 0.00 1.28
691 753 7.525029 CGATTACTCCCTCCGTTCCTAAATATT 60.525 40.741 0.00 0.00 0.00 1.28
692 754 8.731591 ATTACTCCCTCCGTTCCTAAATATTA 57.268 34.615 0.00 0.00 0.00 0.98
693 755 6.416631 ACTCCCTCCGTTCCTAAATATTAC 57.583 41.667 0.00 0.00 0.00 1.89
694 756 5.901276 ACTCCCTCCGTTCCTAAATATTACA 59.099 40.000 0.00 0.00 0.00 2.41
695 757 6.557633 ACTCCCTCCGTTCCTAAATATTACAT 59.442 38.462 0.00 0.00 0.00 2.29
696 758 7.731688 ACTCCCTCCGTTCCTAAATATTACATA 59.268 37.037 0.00 0.00 0.00 2.29
697 759 8.674925 TCCCTCCGTTCCTAAATATTACATAT 57.325 34.615 0.00 0.00 0.00 1.78
698 760 9.108111 TCCCTCCGTTCCTAAATATTACATATT 57.892 33.333 0.00 0.00 37.05 1.28
699 761 9.734984 CCCTCCGTTCCTAAATATTACATATTT 57.265 33.333 6.88 6.88 44.94 1.40
726 788 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
727 789 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
728 790 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
729 791 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
730 792 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
731 793 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
732 794 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
733 795 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
734 796 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
735 797 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
736 798 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
737 799 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
738 800 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
739 801 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
740 802 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
741 803 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
742 804 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
743 805 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
744 806 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
745 807 3.819337 GCTCCGTATGTAGTCCATAGTGA 59.181 47.826 0.00 0.00 36.71 3.41
746 808 4.277672 GCTCCGTATGTAGTCCATAGTGAA 59.722 45.833 0.00 0.00 36.71 3.18
747 809 5.221185 GCTCCGTATGTAGTCCATAGTGAAA 60.221 44.000 0.00 0.00 36.71 2.69
748 810 6.516860 GCTCCGTATGTAGTCCATAGTGAAAT 60.517 42.308 0.00 0.00 36.71 2.17
749 811 6.978338 TCCGTATGTAGTCCATAGTGAAATC 58.022 40.000 0.00 0.00 36.71 2.17
750 812 6.776116 TCCGTATGTAGTCCATAGTGAAATCT 59.224 38.462 0.00 0.00 36.71 2.40
751 813 7.040617 TCCGTATGTAGTCCATAGTGAAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
752 814 7.040340 CCGTATGTAGTCCATAGTGAAATCTCT 60.040 40.741 0.00 0.00 36.71 3.10
753 815 9.000486 CGTATGTAGTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
760 822 9.660180 AGTCCATAGTGAAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
761 823 9.660180 GTCCATAGTGAAATCTCTAAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
779 841 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
780 842 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
781 843 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
782 844 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
783 845 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
784 846 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
785 847 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
786 848 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
787 849 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
788 850 5.393068 TTTAGGAACGGAGGGAGTAGATA 57.607 43.478 0.00 0.00 0.00 1.98
789 851 3.967467 AGGAACGGAGGGAGTAGATAA 57.033 47.619 0.00 0.00 0.00 1.75
790 852 4.261411 AGGAACGGAGGGAGTAGATAAA 57.739 45.455 0.00 0.00 0.00 1.40
791 853 4.617593 AGGAACGGAGGGAGTAGATAAAA 58.382 43.478 0.00 0.00 0.00 1.52
792 854 5.217400 AGGAACGGAGGGAGTAGATAAAAT 58.783 41.667 0.00 0.00 0.00 1.82
793 855 5.070580 AGGAACGGAGGGAGTAGATAAAATG 59.929 44.000 0.00 0.00 0.00 2.32
794 856 5.070047 GGAACGGAGGGAGTAGATAAAATGA 59.930 44.000 0.00 0.00 0.00 2.57
795 857 5.793030 ACGGAGGGAGTAGATAAAATGAG 57.207 43.478 0.00 0.00 0.00 2.90
796 858 5.209659 ACGGAGGGAGTAGATAAAATGAGT 58.790 41.667 0.00 0.00 0.00 3.41
827 889 1.259316 GTTCGATGCAAATGCGTTCC 58.741 50.000 1.04 0.00 45.83 3.62
828 890 1.135689 GTTCGATGCAAATGCGTTCCT 60.136 47.619 1.04 0.00 45.83 3.36
829 891 0.447406 TCGATGCAAATGCGTTCCTG 59.553 50.000 1.04 0.00 45.83 3.86
830 892 1.135699 CGATGCAAATGCGTTCCTGC 61.136 55.000 8.15 8.15 45.83 4.85
831 893 0.171903 GATGCAAATGCGTTCCTGCT 59.828 50.000 14.67 2.95 45.83 4.24
832 894 0.171903 ATGCAAATGCGTTCCTGCTC 59.828 50.000 14.67 0.00 45.83 4.26
851 913 9.733556 TCCTGCTCTCTTTAATTATGTGTTTTA 57.266 29.630 0.00 0.00 0.00 1.52
892 954 5.888691 ATATACCAGTATCAGCGAGACAG 57.111 43.478 6.20 0.00 0.00 3.51
953 1015 6.575201 CGTGTTTCTTCTCTACAATTTGCTTC 59.425 38.462 0.00 0.00 0.00 3.86
981 1043 4.116238 GGAGTTCTTGATTGATCGAGTCC 58.884 47.826 7.85 4.91 39.01 3.85
982 1044 4.382040 GGAGTTCTTGATTGATCGAGTCCA 60.382 45.833 7.85 0.00 39.01 4.02
989 1051 4.697514 TGATTGATCGAGTCCAAGGAATC 58.302 43.478 6.49 6.49 36.08 2.52
992 1054 3.099905 TGATCGAGTCCAAGGAATCTGT 58.900 45.455 13.87 3.16 37.12 3.41
996 1058 1.734465 GAGTCCAAGGAATCTGTTGCG 59.266 52.381 9.17 0.00 36.45 4.85
997 1059 0.169009 GTCCAAGGAATCTGTTGCGC 59.831 55.000 0.00 0.00 0.00 6.09
999 1061 1.243342 CCAAGGAATCTGTTGCGCCA 61.243 55.000 4.18 0.00 0.00 5.69
1003 1065 0.179129 GGAATCTGTTGCGCCAATGG 60.179 55.000 4.18 0.00 0.00 3.16
1005 1067 0.527565 AATCTGTTGCGCCAATGGTC 59.472 50.000 4.18 0.00 0.00 4.02
1016 1078 1.044790 CCAATGGTCCCCAAGATGCC 61.045 60.000 0.00 0.00 36.95 4.40
1017 1079 1.076777 AATGGTCCCCAAGATGCCG 60.077 57.895 0.00 0.00 36.95 5.69
1018 1080 1.863155 AATGGTCCCCAAGATGCCGT 61.863 55.000 0.00 0.00 36.95 5.68
1581 1643 2.296792 CAAGGTGATGTTGTGGTCACA 58.703 47.619 7.67 0.00 44.99 3.58
1614 1676 2.224843 TGTTGCCATGGTTGAGTCTGAT 60.225 45.455 14.67 0.00 0.00 2.90
1641 1715 0.890683 GTGGCTTCCAGATTGTTGGG 59.109 55.000 0.00 0.00 38.81 4.12
1731 1805 0.108585 TTGACTCTGTGAACTGCCCC 59.891 55.000 0.00 0.00 0.00 5.80
1839 1913 2.819595 CCGTCAAGGTGGGATGCG 60.820 66.667 0.00 0.00 34.51 4.73
1926 2003 1.816074 TCTTGGCCGGTATTGTGTTC 58.184 50.000 1.90 0.00 0.00 3.18
2238 2315 1.299541 CTGGATATGTTGGTGTCCGC 58.700 55.000 0.00 0.00 32.52 5.54
2559 2645 2.856032 CTTCTTGTGCTCGGTGCG 59.144 61.111 0.00 0.00 46.63 5.34
2769 2855 0.480252 AAGCCTTCTTTGCCTCTGGT 59.520 50.000 0.00 0.00 0.00 4.00
3112 3198 6.316390 GCACAGTTACTCCAGCTTATGTTTAT 59.684 38.462 0.00 0.00 0.00 1.40
3266 3353 4.328169 GCAAATTTGATTACAGCTCCTTGC 59.672 41.667 22.31 0.00 43.29 4.01
3290 3377 4.281525 TCTGTTTTGACGTTTTAGTGCC 57.718 40.909 0.00 0.00 0.00 5.01
3305 3392 2.203153 GCCGGTGAGGTGTGTTGT 60.203 61.111 1.90 0.00 43.70 3.32
3331 3418 7.678194 ACACACATGTTCGAAAAATTTGTAG 57.322 32.000 0.00 4.84 34.46 2.74
3401 3523 2.553602 ACGCTGTTGATCATTTGCTTCA 59.446 40.909 0.00 0.00 0.00 3.02
3408 3530 4.566545 TGATCATTTGCTTCACGTGTTT 57.433 36.364 16.51 0.00 0.00 2.83
3429 3551 9.736023 GTGTTTTGAAGTTTGAATCAGTTCTAT 57.264 29.630 4.48 0.00 35.33 1.98
3430 3552 9.950680 TGTTTTGAAGTTTGAATCAGTTCTATC 57.049 29.630 4.48 0.00 35.33 2.08
3454 3738 3.807622 GTCTCGGTGATTGTTTCTTGTCA 59.192 43.478 0.00 0.00 0.00 3.58
3466 3750 7.867305 TTGTTTCTTGTCAGTGTTATGGTAA 57.133 32.000 0.00 0.00 0.00 2.85
3472 3756 5.037383 TGTCAGTGTTATGGTAACCACAA 57.963 39.130 0.00 0.00 35.80 3.33
3474 3758 5.163290 TGTCAGTGTTATGGTAACCACAAGA 60.163 40.000 0.00 0.00 35.80 3.02
3475 3759 5.178809 GTCAGTGTTATGGTAACCACAAGAC 59.821 44.000 0.00 0.00 34.92 3.01
3508 6345 0.675633 ACCATGAGCTTTGTGGTTGC 59.324 50.000 11.51 0.00 43.44 4.17
3635 6472 4.481930 TTAGTTGGCAAGACGAAATGTG 57.518 40.909 0.00 0.00 0.00 3.21
3652 6489 2.980233 GCACTCTGCGGTTTGGCT 60.980 61.111 0.00 0.00 31.71 4.75
3653 6490 2.555547 GCACTCTGCGGTTTGGCTT 61.556 57.895 0.00 0.00 31.71 4.35
3676 6513 4.880120 TCTAGCTTCTCTGATTTGCATTGG 59.120 41.667 0.00 0.00 0.00 3.16
3736 6573 6.639632 TCAATAAAGCTCCCATTTATCAGC 57.360 37.500 0.00 0.00 32.90 4.26
3739 6576 4.996788 AAAGCTCCCATTTATCAGCAAG 57.003 40.909 0.00 0.00 34.08 4.01
3742 6579 4.801164 AGCTCCCATTTATCAGCAAGAAT 58.199 39.130 0.00 0.00 34.08 2.40
3746 6583 6.039717 GCTCCCATTTATCAGCAAGAATAACA 59.960 38.462 0.00 0.00 0.00 2.41
3747 6584 7.255730 GCTCCCATTTATCAGCAAGAATAACAT 60.256 37.037 0.00 0.00 0.00 2.71
3748 6585 8.169977 TCCCATTTATCAGCAAGAATAACATC 57.830 34.615 0.00 0.00 0.00 3.06
3749 6586 8.000709 TCCCATTTATCAGCAAGAATAACATCT 58.999 33.333 0.00 0.00 0.00 2.90
3750 6587 8.636213 CCCATTTATCAGCAAGAATAACATCTT 58.364 33.333 0.00 0.00 40.23 2.40
3759 6596 5.536554 AAGAATAACATCTTGTGCGTGAG 57.463 39.130 0.00 0.00 38.22 3.51
3761 6598 7.100347 AAGAATAACATCTTGTGCGTGAGCC 62.100 44.000 0.00 0.00 46.88 4.70
3778 6615 7.426929 CGTGAGCCTTTTTCTAGCATATATT 57.573 36.000 0.00 0.00 0.00 1.28
3779 6616 7.513968 CGTGAGCCTTTTTCTAGCATATATTC 58.486 38.462 0.00 0.00 0.00 1.75
3780 6617 7.360438 CGTGAGCCTTTTTCTAGCATATATTCC 60.360 40.741 0.00 0.00 0.00 3.01
3781 6618 7.663493 GTGAGCCTTTTTCTAGCATATATTCCT 59.337 37.037 0.00 0.00 0.00 3.36
3782 6619 8.220559 TGAGCCTTTTTCTAGCATATATTCCTT 58.779 33.333 0.00 0.00 0.00 3.36
3783 6620 9.726438 GAGCCTTTTTCTAGCATATATTCCTTA 57.274 33.333 0.00 0.00 0.00 2.69
3784 6621 9.508642 AGCCTTTTTCTAGCATATATTCCTTAC 57.491 33.333 0.00 0.00 0.00 2.34
3785 6622 8.731605 GCCTTTTTCTAGCATATATTCCTTACC 58.268 37.037 0.00 0.00 0.00 2.85
3796 6633 9.477484 GCATATATTCCTTACCTATTGGATACG 57.523 37.037 0.00 0.00 42.51 3.06
3799 6636 5.443185 TTCCTTACCTATTGGATACGACG 57.557 43.478 0.00 0.00 42.51 5.12
3800 6637 4.717877 TCCTTACCTATTGGATACGACGA 58.282 43.478 0.00 0.00 42.51 4.20
3801 6638 5.319453 TCCTTACCTATTGGATACGACGAT 58.681 41.667 0.00 0.00 42.51 3.73
3802 6639 5.771666 TCCTTACCTATTGGATACGACGATT 59.228 40.000 0.00 0.00 42.51 3.34
3803 6640 6.266103 TCCTTACCTATTGGATACGACGATTT 59.734 38.462 0.00 0.00 42.51 2.17
3804 6641 7.448161 TCCTTACCTATTGGATACGACGATTTA 59.552 37.037 0.00 0.00 42.51 1.40
3805 6642 8.248945 CCTTACCTATTGGATACGACGATTTAT 58.751 37.037 0.00 0.00 42.51 1.40
3806 6643 8.975410 TTACCTATTGGATACGACGATTTATG 57.025 34.615 0.00 0.00 42.51 1.90
3807 6644 7.223260 ACCTATTGGATACGACGATTTATGA 57.777 36.000 0.00 0.00 42.51 2.15
3808 6645 7.088905 ACCTATTGGATACGACGATTTATGAC 58.911 38.462 0.00 0.00 42.51 3.06
3809 6646 7.039923 ACCTATTGGATACGACGATTTATGACT 60.040 37.037 0.00 0.00 42.51 3.41
3810 6647 7.813148 CCTATTGGATACGACGATTTATGACTT 59.187 37.037 0.00 0.00 42.51 3.01
3811 6648 7.639162 ATTGGATACGACGATTTATGACTTC 57.361 36.000 0.00 0.00 42.51 3.01
3812 6649 6.139048 TGGATACGACGATTTATGACTTCA 57.861 37.500 0.00 0.00 42.51 3.02
3813 6650 6.206498 TGGATACGACGATTTATGACTTCAG 58.794 40.000 0.00 0.00 42.51 3.02
3814 6651 5.117287 GGATACGACGATTTATGACTTCAGC 59.883 44.000 0.00 0.00 0.00 4.26
3815 6652 3.845178 ACGACGATTTATGACTTCAGCA 58.155 40.909 0.00 0.00 0.00 4.41
3816 6653 3.859961 ACGACGATTTATGACTTCAGCAG 59.140 43.478 0.00 0.00 0.00 4.24
3817 6654 3.302092 CGACGATTTATGACTTCAGCAGC 60.302 47.826 0.00 0.00 0.00 5.25
3818 6655 2.939103 ACGATTTATGACTTCAGCAGCC 59.061 45.455 0.00 0.00 0.00 4.85
3819 6656 3.201290 CGATTTATGACTTCAGCAGCCT 58.799 45.455 0.00 0.00 0.00 4.58
3820 6657 3.247173 CGATTTATGACTTCAGCAGCCTC 59.753 47.826 0.00 0.00 0.00 4.70
3821 6658 3.701205 TTTATGACTTCAGCAGCCTCA 57.299 42.857 0.00 0.00 0.00 3.86
3822 6659 3.701205 TTATGACTTCAGCAGCCTCAA 57.299 42.857 0.00 0.00 0.00 3.02
3823 6660 2.803030 ATGACTTCAGCAGCCTCAAT 57.197 45.000 0.00 0.00 0.00 2.57
3824 6661 2.574006 TGACTTCAGCAGCCTCAATT 57.426 45.000 0.00 0.00 0.00 2.32
3825 6662 2.156917 TGACTTCAGCAGCCTCAATTG 58.843 47.619 0.00 0.00 0.00 2.32
3826 6663 2.157738 GACTTCAGCAGCCTCAATTGT 58.842 47.619 5.13 0.00 0.00 2.71
3827 6664 2.555757 GACTTCAGCAGCCTCAATTGTT 59.444 45.455 5.13 0.00 0.00 2.83
3828 6665 3.753272 GACTTCAGCAGCCTCAATTGTTA 59.247 43.478 5.13 0.00 0.00 2.41
3829 6666 3.755378 ACTTCAGCAGCCTCAATTGTTAG 59.245 43.478 5.13 0.00 0.00 2.34
3830 6667 3.701205 TCAGCAGCCTCAATTGTTAGA 57.299 42.857 5.13 0.00 0.00 2.10
3831 6668 3.603532 TCAGCAGCCTCAATTGTTAGAG 58.396 45.455 5.13 0.00 0.00 2.43
3832 6669 3.008375 TCAGCAGCCTCAATTGTTAGAGT 59.992 43.478 5.13 0.00 0.00 3.24
3833 6670 3.755378 CAGCAGCCTCAATTGTTAGAGTT 59.245 43.478 5.13 0.00 0.00 3.01
3834 6671 3.755378 AGCAGCCTCAATTGTTAGAGTTG 59.245 43.478 5.13 1.25 0.00 3.16
3835 6672 3.119708 GCAGCCTCAATTGTTAGAGTTGG 60.120 47.826 5.13 0.00 0.00 3.77
3836 6673 4.074970 CAGCCTCAATTGTTAGAGTTGGT 58.925 43.478 5.13 0.00 0.00 3.67
3837 6674 4.520492 CAGCCTCAATTGTTAGAGTTGGTT 59.480 41.667 5.13 0.00 0.00 3.67
3838 6675 4.762251 AGCCTCAATTGTTAGAGTTGGTTC 59.238 41.667 5.13 0.00 0.00 3.62
3839 6676 4.762251 GCCTCAATTGTTAGAGTTGGTTCT 59.238 41.667 5.13 0.00 0.00 3.01
3840 6677 5.335191 GCCTCAATTGTTAGAGTTGGTTCTG 60.335 44.000 5.13 0.00 0.00 3.02
3841 6678 5.335191 CCTCAATTGTTAGAGTTGGTTCTGC 60.335 44.000 5.13 0.00 0.00 4.26
3842 6679 4.213270 TCAATTGTTAGAGTTGGTTCTGCG 59.787 41.667 5.13 0.00 0.00 5.18
3843 6680 1.508632 TGTTAGAGTTGGTTCTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
3844 6681 1.202592 TGTTAGAGTTGGTTCTGCGCA 60.203 47.619 10.98 10.98 0.00 6.09
3845 6682 2.076863 GTTAGAGTTGGTTCTGCGCAT 58.923 47.619 12.24 0.00 0.00 4.73
3846 6683 2.010145 TAGAGTTGGTTCTGCGCATC 57.990 50.000 12.24 2.20 0.00 3.91
3847 6684 0.322975 AGAGTTGGTTCTGCGCATCT 59.677 50.000 12.24 5.10 0.00 2.90
3848 6685 1.160137 GAGTTGGTTCTGCGCATCTT 58.840 50.000 12.24 0.00 0.00 2.40
3849 6686 1.537202 GAGTTGGTTCTGCGCATCTTT 59.463 47.619 12.24 0.00 0.00 2.52
3850 6687 1.267806 AGTTGGTTCTGCGCATCTTTG 59.732 47.619 12.24 0.00 0.00 2.77
3851 6688 1.266718 GTTGGTTCTGCGCATCTTTGA 59.733 47.619 12.24 0.00 0.00 2.69
3852 6689 1.159285 TGGTTCTGCGCATCTTTGAG 58.841 50.000 12.24 0.00 0.00 3.02
3853 6690 0.449388 GGTTCTGCGCATCTTTGAGG 59.551 55.000 12.24 0.00 0.00 3.86
3854 6691 1.160137 GTTCTGCGCATCTTTGAGGT 58.840 50.000 12.24 0.00 0.00 3.85
3855 6692 1.135859 GTTCTGCGCATCTTTGAGGTG 60.136 52.381 12.24 0.00 0.00 4.00
3856 6693 0.674581 TCTGCGCATCTTTGAGGTGG 60.675 55.000 12.24 0.00 0.00 4.61
3857 6694 0.674581 CTGCGCATCTTTGAGGTGGA 60.675 55.000 12.24 0.00 0.00 4.02
3858 6695 0.674581 TGCGCATCTTTGAGGTGGAG 60.675 55.000 5.66 0.00 0.00 3.86
3859 6696 0.391661 GCGCATCTTTGAGGTGGAGA 60.392 55.000 0.30 0.00 0.00 3.71
3860 6697 1.649664 CGCATCTTTGAGGTGGAGAG 58.350 55.000 0.00 0.00 0.00 3.20
3861 6698 1.741732 CGCATCTTTGAGGTGGAGAGG 60.742 57.143 0.00 0.00 0.00 3.69
3862 6699 2.016096 GCATCTTTGAGGTGGAGAGGC 61.016 57.143 0.00 0.00 39.55 4.70
3863 6700 0.915364 ATCTTTGAGGTGGAGAGGCC 59.085 55.000 0.00 0.00 37.10 5.19
3864 6701 0.473694 TCTTTGAGGTGGAGAGGCCA 60.474 55.000 5.01 0.00 46.96 5.36
3875 6712 4.897509 TGGAGAGGCCAGATGTATTATG 57.102 45.455 5.01 0.00 43.33 1.90
3876 6713 4.234550 TGGAGAGGCCAGATGTATTATGT 58.765 43.478 5.01 0.00 43.33 2.29
3877 6714 5.402630 TGGAGAGGCCAGATGTATTATGTA 58.597 41.667 5.01 0.00 43.33 2.29
3878 6715 6.025539 TGGAGAGGCCAGATGTATTATGTAT 58.974 40.000 5.01 0.00 43.33 2.29
3879 6716 6.155221 TGGAGAGGCCAGATGTATTATGTATC 59.845 42.308 5.01 0.00 43.33 2.24
3880 6717 6.155221 GGAGAGGCCAGATGTATTATGTATCA 59.845 42.308 5.01 0.00 36.34 2.15
3881 6718 7.147585 GGAGAGGCCAGATGTATTATGTATCAT 60.148 40.741 5.01 0.00 36.34 2.45
3882 6719 7.790027 AGAGGCCAGATGTATTATGTATCATC 58.210 38.462 5.01 0.00 37.52 2.92
3883 6720 7.622878 AGAGGCCAGATGTATTATGTATCATCT 59.377 37.037 5.01 0.00 44.92 2.90
3884 6721 7.790027 AGGCCAGATGTATTATGTATCATCTC 58.210 38.462 5.01 0.00 43.07 2.75
3885 6722 7.401204 AGGCCAGATGTATTATGTATCATCTCA 59.599 37.037 5.01 0.00 43.07 3.27
3886 6723 7.710044 GGCCAGATGTATTATGTATCATCTCAG 59.290 40.741 0.00 0.00 43.07 3.35
3887 6724 7.710044 GCCAGATGTATTATGTATCATCTCAGG 59.290 40.741 0.00 0.00 43.07 3.86
3888 6725 8.202811 CCAGATGTATTATGTATCATCTCAGGG 58.797 40.741 0.00 0.00 43.07 4.45
3889 6726 8.202811 CAGATGTATTATGTATCATCTCAGGGG 58.797 40.741 0.00 0.00 43.07 4.79
3890 6727 6.874278 TGTATTATGTATCATCTCAGGGGG 57.126 41.667 0.00 0.00 0.00 5.40
3891 6728 4.851639 ATTATGTATCATCTCAGGGGGC 57.148 45.455 0.00 0.00 0.00 5.80
3892 6729 2.123018 ATGTATCATCTCAGGGGGCA 57.877 50.000 0.00 0.00 0.00 5.36
3893 6730 1.891933 TGTATCATCTCAGGGGGCAA 58.108 50.000 0.00 0.00 0.00 4.52
3894 6731 1.770658 TGTATCATCTCAGGGGGCAAG 59.229 52.381 0.00 0.00 0.00 4.01
3895 6732 1.771255 GTATCATCTCAGGGGGCAAGT 59.229 52.381 0.00 0.00 0.00 3.16
3896 6733 1.302907 ATCATCTCAGGGGGCAAGTT 58.697 50.000 0.00 0.00 0.00 2.66
3897 6734 1.075601 TCATCTCAGGGGGCAAGTTT 58.924 50.000 0.00 0.00 0.00 2.66
3898 6735 1.428912 TCATCTCAGGGGGCAAGTTTT 59.571 47.619 0.00 0.00 0.00 2.43
3899 6736 2.158325 TCATCTCAGGGGGCAAGTTTTT 60.158 45.455 0.00 0.00 0.00 1.94
3900 6737 1.995376 TCTCAGGGGGCAAGTTTTTC 58.005 50.000 0.00 0.00 0.00 2.29
3901 6738 1.499007 TCTCAGGGGGCAAGTTTTTCT 59.501 47.619 0.00 0.00 0.00 2.52
3902 6739 1.889170 CTCAGGGGGCAAGTTTTTCTC 59.111 52.381 0.00 0.00 0.00 2.87
3903 6740 1.216678 TCAGGGGGCAAGTTTTTCTCA 59.783 47.619 0.00 0.00 0.00 3.27
3904 6741 1.615392 CAGGGGGCAAGTTTTTCTCAG 59.385 52.381 0.00 0.00 0.00 3.35
3905 6742 1.217942 AGGGGGCAAGTTTTTCTCAGT 59.782 47.619 0.00 0.00 0.00 3.41
3906 6743 2.039418 GGGGGCAAGTTTTTCTCAGTT 58.961 47.619 0.00 0.00 0.00 3.16
3907 6744 3.117284 AGGGGGCAAGTTTTTCTCAGTTA 60.117 43.478 0.00 0.00 0.00 2.24
3908 6745 3.832490 GGGGGCAAGTTTTTCTCAGTTAT 59.168 43.478 0.00 0.00 0.00 1.89
3909 6746 4.321974 GGGGGCAAGTTTTTCTCAGTTATG 60.322 45.833 0.00 0.00 0.00 1.90
3910 6747 4.321974 GGGGCAAGTTTTTCTCAGTTATGG 60.322 45.833 0.00 0.00 0.00 2.74
3911 6748 4.522789 GGGCAAGTTTTTCTCAGTTATGGA 59.477 41.667 0.00 0.00 0.00 3.41
3912 6749 5.335976 GGGCAAGTTTTTCTCAGTTATGGAG 60.336 44.000 0.00 0.00 0.00 3.86
3913 6750 5.335976 GGCAAGTTTTTCTCAGTTATGGAGG 60.336 44.000 0.00 0.00 33.18 4.30
3914 6751 5.335976 GCAAGTTTTTCTCAGTTATGGAGGG 60.336 44.000 0.00 0.00 33.18 4.30
3915 6752 5.843019 AGTTTTTCTCAGTTATGGAGGGA 57.157 39.130 0.00 0.00 33.18 4.20
3916 6753 5.810095 AGTTTTTCTCAGTTATGGAGGGAG 58.190 41.667 0.00 0.00 33.18 4.30
3917 6754 5.310857 AGTTTTTCTCAGTTATGGAGGGAGT 59.689 40.000 0.00 0.00 33.18 3.85
3918 6755 6.500751 AGTTTTTCTCAGTTATGGAGGGAGTA 59.499 38.462 0.00 0.00 33.18 2.59
3919 6756 5.934402 TTTCTCAGTTATGGAGGGAGTAC 57.066 43.478 0.00 0.00 33.18 2.73
3920 6757 4.603094 TCTCAGTTATGGAGGGAGTACA 57.397 45.455 0.00 0.00 33.18 2.90
3921 6758 4.942944 TCTCAGTTATGGAGGGAGTACAA 58.057 43.478 0.00 0.00 33.18 2.41
3922 6759 4.956700 TCTCAGTTATGGAGGGAGTACAAG 59.043 45.833 0.00 0.00 33.18 3.16
3923 6760 4.684724 TCAGTTATGGAGGGAGTACAAGT 58.315 43.478 0.00 0.00 0.00 3.16
3924 6761 5.091552 TCAGTTATGGAGGGAGTACAAGTT 58.908 41.667 0.00 0.00 0.00 2.66
3925 6762 6.258354 TCAGTTATGGAGGGAGTACAAGTTA 58.742 40.000 0.00 0.00 0.00 2.24
3926 6763 6.154021 TCAGTTATGGAGGGAGTACAAGTTAC 59.846 42.308 0.00 0.00 0.00 2.50
3927 6764 6.154706 CAGTTATGGAGGGAGTACAAGTTACT 59.845 42.308 0.00 0.00 0.00 2.24
3928 6765 6.154706 AGTTATGGAGGGAGTACAAGTTACTG 59.845 42.308 0.00 0.00 0.00 2.74
3929 6766 3.170717 TGGAGGGAGTACAAGTTACTGG 58.829 50.000 0.00 0.00 0.00 4.00
3930 6767 2.500504 GGAGGGAGTACAAGTTACTGGG 59.499 54.545 0.00 0.00 0.00 4.45
3931 6768 3.438183 GAGGGAGTACAAGTTACTGGGA 58.562 50.000 0.00 0.00 0.00 4.37
3932 6769 3.171528 AGGGAGTACAAGTTACTGGGAC 58.828 50.000 0.00 0.00 0.00 4.46
3933 6770 2.094338 GGGAGTACAAGTTACTGGGACG 60.094 54.545 0.00 0.00 0.00 4.79
3934 6771 2.094338 GGAGTACAAGTTACTGGGACGG 60.094 54.545 0.00 0.00 42.99 4.79
3935 6772 2.821969 GAGTACAAGTTACTGGGACGGA 59.178 50.000 0.00 0.00 38.67 4.69
3936 6773 2.560105 AGTACAAGTTACTGGGACGGAC 59.440 50.000 0.00 0.00 38.67 4.79
3937 6774 0.316204 ACAAGTTACTGGGACGGACG 59.684 55.000 0.00 0.00 38.67 4.79
3938 6775 0.389426 CAAGTTACTGGGACGGACGG 60.389 60.000 0.00 0.00 38.67 4.79
3939 6776 1.538687 AAGTTACTGGGACGGACGGG 61.539 60.000 0.00 0.00 38.67 5.28
3940 6777 3.384532 TTACTGGGACGGACGGGC 61.385 66.667 0.00 0.00 38.67 6.13
3941 6778 3.892104 TTACTGGGACGGACGGGCT 62.892 63.158 0.00 0.00 38.67 5.19
3947 6784 4.500116 GACGGACGGGCTGAGCTC 62.500 72.222 6.82 6.82 0.00 4.09
3949 6786 4.504916 CGGACGGGCTGAGCTCTG 62.505 72.222 16.19 15.96 0.00 3.35
3950 6787 3.071206 GGACGGGCTGAGCTCTGA 61.071 66.667 23.35 0.00 0.00 3.27
3951 6788 2.430610 GGACGGGCTGAGCTCTGAT 61.431 63.158 23.35 5.89 0.00 2.90
3952 6789 1.227205 GACGGGCTGAGCTCTGATG 60.227 63.158 23.35 13.60 0.00 3.07
3953 6790 1.670949 GACGGGCTGAGCTCTGATGA 61.671 60.000 23.35 0.00 0.00 2.92
3954 6791 1.227205 CGGGCTGAGCTCTGATGAC 60.227 63.158 23.35 9.04 0.00 3.06
3955 6792 1.674764 CGGGCTGAGCTCTGATGACT 61.675 60.000 23.35 0.00 0.00 3.41
3956 6793 0.104671 GGGCTGAGCTCTGATGACTC 59.895 60.000 23.35 2.63 0.00 3.36
3957 6794 0.248990 GGCTGAGCTCTGATGACTCG 60.249 60.000 23.35 0.00 32.98 4.18
3958 6795 0.455410 GCTGAGCTCTGATGACTCGT 59.545 55.000 23.35 0.00 32.98 4.18
3959 6796 1.533756 GCTGAGCTCTGATGACTCGTC 60.534 57.143 23.35 0.00 32.98 4.20
3960 6797 1.742268 CTGAGCTCTGATGACTCGTCA 59.258 52.381 16.19 1.79 44.59 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.824783 TCCATTTGAATTTGGAGGATAATTTGT 58.175 29.630 0.00 0.00 37.10 2.83
18 19 9.669887 TTCCATTTGAATTTGGAGGATAATTTG 57.330 29.630 0.00 0.00 42.73 2.32
20 21 9.671279 GTTTCCATTTGAATTTGGAGGATAATT 57.329 29.630 0.00 0.00 42.73 1.40
21 22 9.050154 AGTTTCCATTTGAATTTGGAGGATAAT 57.950 29.630 0.00 0.00 42.73 1.28
22 23 8.313292 CAGTTTCCATTTGAATTTGGAGGATAA 58.687 33.333 0.00 0.00 42.73 1.75
23 24 7.579339 GCAGTTTCCATTTGAATTTGGAGGATA 60.579 37.037 0.00 0.00 42.73 2.59
24 25 6.704310 CAGTTTCCATTTGAATTTGGAGGAT 58.296 36.000 0.00 0.00 42.73 3.24
25 26 5.511202 GCAGTTTCCATTTGAATTTGGAGGA 60.511 40.000 0.00 0.00 42.73 3.71
26 27 4.692155 GCAGTTTCCATTTGAATTTGGAGG 59.308 41.667 0.00 0.00 42.73 4.30
27 28 4.386652 CGCAGTTTCCATTTGAATTTGGAG 59.613 41.667 0.00 0.00 42.73 3.86
28 29 4.305769 CGCAGTTTCCATTTGAATTTGGA 58.694 39.130 0.00 0.00 40.24 3.53
29 30 3.120580 GCGCAGTTTCCATTTGAATTTGG 60.121 43.478 0.30 0.00 31.67 3.28
30 31 3.120580 GGCGCAGTTTCCATTTGAATTTG 60.121 43.478 10.83 0.00 31.67 2.32
31 32 3.066380 GGCGCAGTTTCCATTTGAATTT 58.934 40.909 10.83 0.00 31.67 1.82
32 33 2.687370 GGCGCAGTTTCCATTTGAATT 58.313 42.857 10.83 0.00 31.67 2.17
33 34 1.402720 CGGCGCAGTTTCCATTTGAAT 60.403 47.619 10.83 0.00 31.67 2.57
34 35 0.039617 CGGCGCAGTTTCCATTTGAA 60.040 50.000 10.83 0.00 0.00 2.69
35 36 0.886938 TCGGCGCAGTTTCCATTTGA 60.887 50.000 10.83 0.00 0.00 2.69
36 37 0.454957 CTCGGCGCAGTTTCCATTTG 60.455 55.000 10.83 0.00 0.00 2.32
37 38 0.889186 ACTCGGCGCAGTTTCCATTT 60.889 50.000 10.83 0.00 0.00 2.32
38 39 1.302511 ACTCGGCGCAGTTTCCATT 60.303 52.632 10.83 0.00 0.00 3.16
39 40 2.034879 CACTCGGCGCAGTTTCCAT 61.035 57.895 10.83 0.00 0.00 3.41
40 41 2.664851 CACTCGGCGCAGTTTCCA 60.665 61.111 10.83 0.00 0.00 3.53
41 42 3.423154 CCACTCGGCGCAGTTTCC 61.423 66.667 10.83 0.00 0.00 3.13
65 66 1.202371 TCTTTATACTGCTCCCGCACG 60.202 52.381 0.00 0.00 42.25 5.34
66 67 2.596904 TCTTTATACTGCTCCCGCAC 57.403 50.000 0.00 0.00 42.25 5.34
81 82 1.862602 GCACGAACCCGCCAATCTTT 61.863 55.000 0.00 0.00 39.95 2.52
194 196 5.707764 TCTCTCTCTCTCTCTCTCTCTATCG 59.292 48.000 0.00 0.00 0.00 2.92
198 200 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
199 201 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
200 202 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
201 203 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
202 204 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
203 205 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
204 206 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
205 207 3.244044 GGCTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
206 208 2.703007 GGCTCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
207 209 2.435805 TGGCTCTCTCTCTCTCTCTCTC 59.564 54.545 0.00 0.00 0.00 3.20
208 210 2.437281 CTGGCTCTCTCTCTCTCTCTCT 59.563 54.545 0.00 0.00 0.00 3.10
209 211 2.435805 TCTGGCTCTCTCTCTCTCTCTC 59.564 54.545 0.00 0.00 0.00 3.20
210 212 2.437281 CTCTGGCTCTCTCTCTCTCTCT 59.563 54.545 0.00 0.00 0.00 3.10
211 213 2.486191 CCTCTGGCTCTCTCTCTCTCTC 60.486 59.091 0.00 0.00 0.00 3.20
212 214 1.492176 CCTCTGGCTCTCTCTCTCTCT 59.508 57.143 0.00 0.00 0.00 3.10
213 215 1.477558 CCCTCTGGCTCTCTCTCTCTC 60.478 61.905 0.00 0.00 0.00 3.20
214 216 0.552848 CCCTCTGGCTCTCTCTCTCT 59.447 60.000 0.00 0.00 0.00 3.10
215 217 0.468029 CCCCTCTGGCTCTCTCTCTC 60.468 65.000 0.00 0.00 0.00 3.20
252 254 1.442017 GTCAAAACATGGGCGACGC 60.442 57.895 12.43 12.43 0.00 5.19
253 255 1.209127 GGTCAAAACATGGGCGACG 59.791 57.895 0.00 0.00 0.00 5.12
254 256 0.521735 GAGGTCAAAACATGGGCGAC 59.478 55.000 0.00 0.00 0.00 5.19
255 257 0.953471 CGAGGTCAAAACATGGGCGA 60.953 55.000 0.00 0.00 0.00 5.54
256 258 1.501741 CGAGGTCAAAACATGGGCG 59.498 57.895 0.00 0.00 0.00 6.13
298 304 2.919856 AGATCTGGATCGCGGGGG 60.920 66.667 6.13 0.00 42.48 5.40
338 344 1.925959 AGAAGGAAATGGGGGAGAAGG 59.074 52.381 0.00 0.00 0.00 3.46
340 346 2.311841 GGAAGAAGGAAATGGGGGAGAA 59.688 50.000 0.00 0.00 0.00 2.87
341 347 1.923148 GGAAGAAGGAAATGGGGGAGA 59.077 52.381 0.00 0.00 0.00 3.71
418 431 4.907034 CGAGGCGACACGGATCCG 62.907 72.222 32.20 32.20 40.94 4.18
467 504 0.673644 CAACACTAACCAGCGGGGAG 60.674 60.000 8.08 6.68 41.15 4.30
481 519 2.178912 TCCCCTGAAATCGACAACAC 57.821 50.000 0.00 0.00 0.00 3.32
485 523 1.750193 GCAATCCCCTGAAATCGACA 58.250 50.000 0.00 0.00 0.00 4.35
560 621 0.738389 ACAAGCAAGGGAAACACGTG 59.262 50.000 15.48 15.48 0.00 4.49
570 631 0.746063 TGCAGACCAAACAAGCAAGG 59.254 50.000 0.00 0.00 31.42 3.61
571 632 1.866880 GCTGCAGACCAAACAAGCAAG 60.867 52.381 20.43 0.00 34.45 4.01
584 645 2.283604 TACACCCGGAGCTGCAGA 60.284 61.111 20.43 0.00 0.00 4.26
625 686 7.063898 ACGAAATCAACACAGATGATCTACAAG 59.936 37.037 0.00 0.00 36.53 3.16
626 687 6.873605 ACGAAATCAACACAGATGATCTACAA 59.126 34.615 0.00 0.00 36.53 2.41
627 688 6.311200 CACGAAATCAACACAGATGATCTACA 59.689 38.462 0.00 0.00 36.53 2.74
664 726 0.388294 GGAACGGAGGGAGTAATCGG 59.612 60.000 0.00 0.00 0.00 4.18
671 733 6.415206 TGTAATATTTAGGAACGGAGGGAG 57.585 41.667 0.00 0.00 0.00 4.30
704 766 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
705 767 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
706 768 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
707 769 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
708 770 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
709 771 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
710 772 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
711 773 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
712 774 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
713 775 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
714 776 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
715 777 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
716 778 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
717 779 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
718 780 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
719 781 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
720 782 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
721 783 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
722 784 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
723 785 3.819337 TCACTATGGACTACATACGGAGC 59.181 47.826 0.00 0.00 41.03 4.70
724 786 6.387041 TTTCACTATGGACTACATACGGAG 57.613 41.667 0.00 0.00 41.03 4.63
725 787 6.776116 AGATTTCACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
726 788 6.982852 AGATTTCACTATGGACTACATACGG 58.017 40.000 0.00 0.00 41.03 4.02
727 789 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
734 796 9.660180 GTCTTTTTAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
735 797 9.660180 AGTCTTTTTAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
753 815 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
754 816 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
755 817 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
756 818 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
757 819 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
758 820 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
759 821 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
760 822 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
761 823 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
762 824 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
763 825 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
764 826 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
765 827 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
766 828 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
767 829 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
768 830 5.393068 TTTATCTACTCCCTCCGTTCCTA 57.607 43.478 0.00 0.00 0.00 2.94
769 831 3.967467 TTATCTACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
770 832 5.070047 TCATTTTATCTACTCCCTCCGTTCC 59.930 44.000 0.00 0.00 0.00 3.62
771 833 6.158023 TCATTTTATCTACTCCCTCCGTTC 57.842 41.667 0.00 0.00 0.00 3.95
772 834 5.661759 ACTCATTTTATCTACTCCCTCCGTT 59.338 40.000 0.00 0.00 0.00 4.44
773 835 5.209659 ACTCATTTTATCTACTCCCTCCGT 58.790 41.667 0.00 0.00 0.00 4.69
774 836 5.793030 ACTCATTTTATCTACTCCCTCCG 57.207 43.478 0.00 0.00 0.00 4.63
775 837 7.842887 ACTACTCATTTTATCTACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
776 838 9.577222 ACTACTACTCATTTTATCTACTCCCTC 57.423 37.037 0.00 0.00 0.00 4.30
793 855 5.293814 TGCATCGAACAGAGTACTACTACTC 59.706 44.000 0.00 2.28 46.70 2.59
794 856 5.183969 TGCATCGAACAGAGTACTACTACT 58.816 41.667 0.00 0.00 35.77 2.57
795 857 5.481200 TGCATCGAACAGAGTACTACTAC 57.519 43.478 0.00 0.00 0.00 2.73
796 858 6.505044 TTTGCATCGAACAGAGTACTACTA 57.495 37.500 0.00 0.00 0.00 1.82
866 928 9.278978 CTGTCTCGCTGATACTGGTATATATAT 57.721 37.037 0.00 0.00 0.00 0.86
867 929 8.483758 TCTGTCTCGCTGATACTGGTATATATA 58.516 37.037 0.00 0.00 0.00 0.86
870 932 5.561679 TCTGTCTCGCTGATACTGGTATAT 58.438 41.667 0.00 0.00 0.00 0.86
871 933 4.969484 TCTGTCTCGCTGATACTGGTATA 58.031 43.478 0.00 0.00 0.00 1.47
872 934 3.821748 TCTGTCTCGCTGATACTGGTAT 58.178 45.455 0.00 0.00 0.00 2.73
873 935 3.277142 TCTGTCTCGCTGATACTGGTA 57.723 47.619 0.00 0.00 0.00 3.25
874 936 2.130272 TCTGTCTCGCTGATACTGGT 57.870 50.000 0.00 0.00 0.00 4.00
902 964 5.491070 TCAATTCATTTCACAGGATCGTCT 58.509 37.500 0.00 0.00 0.00 4.18
909 971 4.156556 ACACGGATCAATTCATTTCACAGG 59.843 41.667 0.00 0.00 0.00 4.00
953 1015 3.423539 TCAATCAAGAACTCCACCTGG 57.576 47.619 0.00 0.00 0.00 4.45
981 1043 0.597568 TTGGCGCAACAGATTCCTTG 59.402 50.000 10.83 0.00 0.00 3.61
982 1044 1.203052 CATTGGCGCAACAGATTCCTT 59.797 47.619 10.83 0.00 0.00 3.36
989 1051 2.568090 GGACCATTGGCGCAACAG 59.432 61.111 10.83 0.00 0.00 3.16
1003 1065 2.511600 CGACGGCATCTTGGGGAC 60.512 66.667 0.00 0.00 0.00 4.46
1005 1067 2.511600 GACGACGGCATCTTGGGG 60.512 66.667 0.00 0.00 0.00 4.96
1025 1087 3.447025 GAAGCCGAGATCCACCGGG 62.447 68.421 6.32 0.00 45.42 5.73
1581 1643 0.478072 TGGCAACACCATCCTCACTT 59.522 50.000 0.00 0.00 46.36 3.16
1614 1676 1.004560 CTGGAAGCCACTCTTGCGA 60.005 57.895 0.00 0.00 44.95 5.10
1839 1913 2.171448 AGCACCATCCATCTTCAGGTAC 59.829 50.000 0.00 0.00 0.00 3.34
1926 2003 4.363999 GGACAGTCCTCAAGAATATGACG 58.636 47.826 12.94 0.00 32.53 4.35
2769 2855 2.234300 AGACGAAGAAAGCAACGGAA 57.766 45.000 0.00 0.00 0.00 4.30
3112 3198 8.015087 CGAAGCATTACAAACATGTCTAAGAAA 58.985 33.333 0.00 0.00 0.00 2.52
3266 3353 4.607235 GCACTAAAACGTCAAAACAGATCG 59.393 41.667 0.00 0.00 0.00 3.69
3290 3377 1.595794 GTGTAACAACACACCTCACCG 59.404 52.381 3.86 0.00 42.46 4.94
3305 3392 9.227490 CTACAAATTTTTCGAACATGTGTGTAA 57.773 29.630 17.37 0.00 37.67 2.41
3401 3523 5.949735 ACTGATTCAAACTTCAAAACACGT 58.050 33.333 0.00 0.00 0.00 4.49
3408 3530 6.934645 ACGGATAGAACTGATTCAAACTTCAA 59.065 34.615 0.00 0.00 37.29 2.69
3454 3738 5.562298 AGTCTTGTGGTTACCATAACACT 57.438 39.130 13.99 13.99 35.28 3.55
3493 6330 0.395586 ACCAGCAACCACAAAGCTCA 60.396 50.000 0.00 0.00 36.26 4.26
3508 6345 1.953559 AGTACACTTGCACACACCAG 58.046 50.000 0.00 0.00 0.00 4.00
3591 6428 9.622004 CTAAACCAATTCATGAGCAATCATATC 57.378 33.333 0.00 0.00 0.00 1.63
3635 6472 2.463675 GAAGCCAAACCGCAGAGTGC 62.464 60.000 0.00 0.00 40.69 4.40
3652 6489 5.356190 CCAATGCAAATCAGAGAAGCTAGAA 59.644 40.000 0.00 0.00 0.00 2.10
3653 6490 4.880120 CCAATGCAAATCAGAGAAGCTAGA 59.120 41.667 0.00 0.00 0.00 2.43
3713 6550 6.128486 TGCTGATAAATGGGAGCTTTATTGA 58.872 36.000 0.00 0.00 30.81 2.57
3739 6576 3.485877 GGCTCACGCACAAGATGTTATTC 60.486 47.826 0.00 0.00 38.10 1.75
3742 6579 1.001974 AGGCTCACGCACAAGATGTTA 59.998 47.619 0.00 0.00 38.10 2.41
3746 6583 1.609208 AAAAGGCTCACGCACAAGAT 58.391 45.000 0.00 0.00 38.10 2.40
3747 6584 1.333619 GAAAAAGGCTCACGCACAAGA 59.666 47.619 0.00 0.00 38.10 3.02
3748 6585 1.334869 AGAAAAAGGCTCACGCACAAG 59.665 47.619 0.00 0.00 38.10 3.16
3749 6586 1.388547 AGAAAAAGGCTCACGCACAA 58.611 45.000 0.00 0.00 38.10 3.33
3750 6587 2.143122 CTAGAAAAAGGCTCACGCACA 58.857 47.619 0.00 0.00 38.10 4.57
3751 6588 1.135944 GCTAGAAAAAGGCTCACGCAC 60.136 52.381 0.00 0.00 38.10 5.34
3752 6589 1.156736 GCTAGAAAAAGGCTCACGCA 58.843 50.000 0.00 0.00 38.10 5.24
3753 6590 1.156736 TGCTAGAAAAAGGCTCACGC 58.843 50.000 0.00 0.00 0.00 5.34
3754 6591 7.360438 GGAATATATGCTAGAAAAAGGCTCACG 60.360 40.741 0.00 0.00 0.00 4.35
3755 6592 7.663493 AGGAATATATGCTAGAAAAAGGCTCAC 59.337 37.037 0.00 0.00 0.00 3.51
3756 6593 7.749666 AGGAATATATGCTAGAAAAAGGCTCA 58.250 34.615 0.00 0.00 0.00 4.26
3757 6594 8.628630 AAGGAATATATGCTAGAAAAAGGCTC 57.371 34.615 0.00 0.00 0.00 4.70
3758 6595 9.508642 GTAAGGAATATATGCTAGAAAAAGGCT 57.491 33.333 0.00 0.00 0.00 4.58
3759 6596 8.731605 GGTAAGGAATATATGCTAGAAAAAGGC 58.268 37.037 0.00 0.00 0.00 4.35
3770 6607 9.477484 CGTATCCAATAGGTAAGGAATATATGC 57.523 37.037 0.00 0.00 34.62 3.14
3773 6610 8.896744 CGTCGTATCCAATAGGTAAGGAATATA 58.103 37.037 0.00 0.00 34.62 0.86
3774 6611 7.613022 TCGTCGTATCCAATAGGTAAGGAATAT 59.387 37.037 0.00 0.00 34.62 1.28
3775 6612 6.942005 TCGTCGTATCCAATAGGTAAGGAATA 59.058 38.462 0.00 0.00 34.62 1.75
3776 6613 5.771666 TCGTCGTATCCAATAGGTAAGGAAT 59.228 40.000 0.00 0.00 34.62 3.01
3777 6614 5.132502 TCGTCGTATCCAATAGGTAAGGAA 58.867 41.667 0.00 0.00 34.62 3.36
3778 6615 4.717877 TCGTCGTATCCAATAGGTAAGGA 58.282 43.478 0.00 0.00 35.89 3.36
3779 6616 5.640189 ATCGTCGTATCCAATAGGTAAGG 57.360 43.478 0.00 0.00 35.89 2.69
3780 6617 9.073368 CATAAATCGTCGTATCCAATAGGTAAG 57.927 37.037 0.00 0.00 35.89 2.34
3781 6618 8.795513 TCATAAATCGTCGTATCCAATAGGTAA 58.204 33.333 0.00 0.00 35.89 2.85
3782 6619 8.239314 GTCATAAATCGTCGTATCCAATAGGTA 58.761 37.037 0.00 0.00 35.89 3.08
3783 6620 7.039923 AGTCATAAATCGTCGTATCCAATAGGT 60.040 37.037 0.00 0.00 35.89 3.08
3784 6621 7.313646 AGTCATAAATCGTCGTATCCAATAGG 58.686 38.462 0.00 0.00 0.00 2.57
3785 6622 8.744008 AAGTCATAAATCGTCGTATCCAATAG 57.256 34.615 0.00 0.00 0.00 1.73
3786 6623 8.354426 TGAAGTCATAAATCGTCGTATCCAATA 58.646 33.333 0.00 0.00 0.00 1.90
3787 6624 7.207383 TGAAGTCATAAATCGTCGTATCCAAT 58.793 34.615 0.00 0.00 0.00 3.16
3788 6625 6.566141 TGAAGTCATAAATCGTCGTATCCAA 58.434 36.000 0.00 0.00 0.00 3.53
3789 6626 6.139048 TGAAGTCATAAATCGTCGTATCCA 57.861 37.500 0.00 0.00 0.00 3.41
3790 6627 5.117287 GCTGAAGTCATAAATCGTCGTATCC 59.883 44.000 0.00 0.00 0.00 2.59
3791 6628 5.685954 TGCTGAAGTCATAAATCGTCGTATC 59.314 40.000 0.00 0.00 0.00 2.24
3792 6629 5.588240 TGCTGAAGTCATAAATCGTCGTAT 58.412 37.500 0.00 0.00 0.00 3.06
3793 6630 4.989044 TGCTGAAGTCATAAATCGTCGTA 58.011 39.130 0.00 0.00 0.00 3.43
3794 6631 3.845178 TGCTGAAGTCATAAATCGTCGT 58.155 40.909 0.00 0.00 0.00 4.34
3795 6632 3.302092 GCTGCTGAAGTCATAAATCGTCG 60.302 47.826 0.00 0.00 0.00 5.12
3796 6633 3.001736 GGCTGCTGAAGTCATAAATCGTC 59.998 47.826 0.00 0.00 0.00 4.20
3797 6634 2.939103 GGCTGCTGAAGTCATAAATCGT 59.061 45.455 0.00 0.00 0.00 3.73
3798 6635 3.201290 AGGCTGCTGAAGTCATAAATCG 58.799 45.455 0.00 0.00 30.52 3.34
3799 6636 4.194640 TGAGGCTGCTGAAGTCATAAATC 58.805 43.478 0.00 0.00 30.52 2.17
3800 6637 4.226427 TGAGGCTGCTGAAGTCATAAAT 57.774 40.909 0.00 0.00 30.52 1.40
3801 6638 3.701205 TGAGGCTGCTGAAGTCATAAA 57.299 42.857 0.00 0.00 30.52 1.40
3802 6639 3.701205 TTGAGGCTGCTGAAGTCATAA 57.299 42.857 0.00 0.00 30.52 1.90
3803 6640 3.920231 ATTGAGGCTGCTGAAGTCATA 57.080 42.857 0.00 0.00 30.52 2.15
3804 6641 2.753452 CAATTGAGGCTGCTGAAGTCAT 59.247 45.455 0.00 0.00 30.52 3.06
3805 6642 2.156917 CAATTGAGGCTGCTGAAGTCA 58.843 47.619 0.00 0.00 30.52 3.41
3806 6643 2.157738 ACAATTGAGGCTGCTGAAGTC 58.842 47.619 13.59 0.00 0.00 3.01
3807 6644 2.283145 ACAATTGAGGCTGCTGAAGT 57.717 45.000 13.59 0.00 0.00 3.01
3808 6645 4.005650 TCTAACAATTGAGGCTGCTGAAG 58.994 43.478 13.59 0.00 0.00 3.02
3809 6646 4.005650 CTCTAACAATTGAGGCTGCTGAA 58.994 43.478 13.59 0.00 0.00 3.02
3810 6647 3.008375 ACTCTAACAATTGAGGCTGCTGA 59.992 43.478 13.59 0.00 34.84 4.26
3811 6648 3.341823 ACTCTAACAATTGAGGCTGCTG 58.658 45.455 13.59 0.00 34.84 4.41
3812 6649 3.710209 ACTCTAACAATTGAGGCTGCT 57.290 42.857 13.59 0.00 34.84 4.24
3813 6650 3.119708 CCAACTCTAACAATTGAGGCTGC 60.120 47.826 13.59 0.00 34.84 5.25
3814 6651 4.074970 ACCAACTCTAACAATTGAGGCTG 58.925 43.478 13.59 1.97 34.84 4.85
3815 6652 4.373156 ACCAACTCTAACAATTGAGGCT 57.627 40.909 13.59 0.00 34.84 4.58
3816 6653 4.762251 AGAACCAACTCTAACAATTGAGGC 59.238 41.667 13.59 0.00 34.84 4.70
3817 6654 5.335191 GCAGAACCAACTCTAACAATTGAGG 60.335 44.000 13.59 1.73 34.84 3.86
3818 6655 5.615544 CGCAGAACCAACTCTAACAATTGAG 60.616 44.000 13.59 0.99 36.47 3.02
3819 6656 4.213270 CGCAGAACCAACTCTAACAATTGA 59.787 41.667 13.59 0.00 0.00 2.57
3820 6657 4.466828 CGCAGAACCAACTCTAACAATTG 58.533 43.478 3.24 3.24 0.00 2.32
3821 6658 3.058224 GCGCAGAACCAACTCTAACAATT 60.058 43.478 0.30 0.00 0.00 2.32
3822 6659 2.484264 GCGCAGAACCAACTCTAACAAT 59.516 45.455 0.30 0.00 0.00 2.71
3823 6660 1.871039 GCGCAGAACCAACTCTAACAA 59.129 47.619 0.30 0.00 0.00 2.83
3824 6661 1.202592 TGCGCAGAACCAACTCTAACA 60.203 47.619 5.66 0.00 0.00 2.41
3825 6662 1.508632 TGCGCAGAACCAACTCTAAC 58.491 50.000 5.66 0.00 0.00 2.34
3826 6663 2.028112 AGATGCGCAGAACCAACTCTAA 60.028 45.455 18.32 0.00 0.00 2.10
3827 6664 1.550524 AGATGCGCAGAACCAACTCTA 59.449 47.619 18.32 0.00 0.00 2.43
3828 6665 0.322975 AGATGCGCAGAACCAACTCT 59.677 50.000 18.32 8.28 0.00 3.24
3829 6666 1.160137 AAGATGCGCAGAACCAACTC 58.840 50.000 18.32 5.66 0.00 3.01
3830 6667 1.267806 CAAAGATGCGCAGAACCAACT 59.732 47.619 18.32 0.00 0.00 3.16
3831 6668 1.266718 TCAAAGATGCGCAGAACCAAC 59.733 47.619 18.32 1.02 0.00 3.77
3832 6669 1.536766 CTCAAAGATGCGCAGAACCAA 59.463 47.619 18.32 0.00 0.00 3.67
3833 6670 1.159285 CTCAAAGATGCGCAGAACCA 58.841 50.000 18.32 0.00 0.00 3.67
3834 6671 0.449388 CCTCAAAGATGCGCAGAACC 59.551 55.000 18.32 4.94 0.00 3.62
3835 6672 1.135859 CACCTCAAAGATGCGCAGAAC 60.136 52.381 18.32 10.12 0.00 3.01
3836 6673 1.159285 CACCTCAAAGATGCGCAGAA 58.841 50.000 18.32 0.00 0.00 3.02
3837 6674 0.674581 CCACCTCAAAGATGCGCAGA 60.675 55.000 18.32 6.13 0.00 4.26
3838 6675 0.674581 TCCACCTCAAAGATGCGCAG 60.675 55.000 18.32 0.74 0.00 5.18
3839 6676 0.674581 CTCCACCTCAAAGATGCGCA 60.675 55.000 14.96 14.96 0.00 6.09
3840 6677 0.391661 TCTCCACCTCAAAGATGCGC 60.392 55.000 0.00 0.00 0.00 6.09
3841 6678 1.649664 CTCTCCACCTCAAAGATGCG 58.350 55.000 0.00 0.00 0.00 4.73
3842 6679 2.016096 GCCTCTCCACCTCAAAGATGC 61.016 57.143 0.00 0.00 0.00 3.91
3843 6680 1.407989 GGCCTCTCCACCTCAAAGATG 60.408 57.143 0.00 0.00 34.01 2.90
3844 6681 0.915364 GGCCTCTCCACCTCAAAGAT 59.085 55.000 0.00 0.00 34.01 2.40
3845 6682 0.473694 TGGCCTCTCCACCTCAAAGA 60.474 55.000 3.32 0.00 40.72 2.52
3846 6683 0.035630 CTGGCCTCTCCACCTCAAAG 60.036 60.000 3.32 0.00 40.72 2.77
3847 6684 0.473694 TCTGGCCTCTCCACCTCAAA 60.474 55.000 3.32 0.00 40.72 2.69
3848 6685 0.252881 ATCTGGCCTCTCCACCTCAA 60.253 55.000 3.32 0.00 40.72 3.02
3849 6686 0.979709 CATCTGGCCTCTCCACCTCA 60.980 60.000 3.32 0.00 40.72 3.86
3850 6687 0.980231 ACATCTGGCCTCTCCACCTC 60.980 60.000 3.32 0.00 40.72 3.85
3851 6688 0.339859 TACATCTGGCCTCTCCACCT 59.660 55.000 3.32 0.00 40.72 4.00
3852 6689 1.428869 ATACATCTGGCCTCTCCACC 58.571 55.000 3.32 0.00 40.72 4.61
3853 6690 4.040952 ACATAATACATCTGGCCTCTCCAC 59.959 45.833 3.32 0.00 40.72 4.02
3854 6691 4.234550 ACATAATACATCTGGCCTCTCCA 58.765 43.478 3.32 0.00 44.18 3.86
3855 6692 4.899352 ACATAATACATCTGGCCTCTCC 57.101 45.455 3.32 0.00 0.00 3.71
3856 6693 7.175347 TGATACATAATACATCTGGCCTCTC 57.825 40.000 3.32 0.00 0.00 3.20
3857 6694 7.622878 AGATGATACATAATACATCTGGCCTCT 59.377 37.037 3.32 0.00 44.76 3.69
3858 6695 7.790027 AGATGATACATAATACATCTGGCCTC 58.210 38.462 3.32 0.00 44.76 4.70
3859 6696 7.401204 TGAGATGATACATAATACATCTGGCCT 59.599 37.037 3.32 0.00 45.88 5.19
3860 6697 7.559486 TGAGATGATACATAATACATCTGGCC 58.441 38.462 12.19 0.00 45.88 5.36
3861 6698 7.710044 CCTGAGATGATACATAATACATCTGGC 59.290 40.741 12.19 1.80 45.88 4.85
3862 6699 8.202811 CCCTGAGATGATACATAATACATCTGG 58.797 40.741 12.19 8.62 45.88 3.86
3863 6700 8.202811 CCCCTGAGATGATACATAATACATCTG 58.797 40.741 12.19 1.23 45.88 2.90
3865 6702 7.504403 CCCCCTGAGATGATACATAATACATC 58.496 42.308 0.00 0.00 39.24 3.06
3866 6703 6.126652 GCCCCCTGAGATGATACATAATACAT 60.127 42.308 0.00 0.00 0.00 2.29
3867 6704 5.189736 GCCCCCTGAGATGATACATAATACA 59.810 44.000 0.00 0.00 0.00 2.29
3868 6705 5.189736 TGCCCCCTGAGATGATACATAATAC 59.810 44.000 0.00 0.00 0.00 1.89
3869 6706 5.349690 TGCCCCCTGAGATGATACATAATA 58.650 41.667 0.00 0.00 0.00 0.98
3870 6707 4.178339 TGCCCCCTGAGATGATACATAAT 58.822 43.478 0.00 0.00 0.00 1.28
3871 6708 3.597182 TGCCCCCTGAGATGATACATAA 58.403 45.455 0.00 0.00 0.00 1.90
3872 6709 3.274281 TGCCCCCTGAGATGATACATA 57.726 47.619 0.00 0.00 0.00 2.29
3873 6710 2.123018 TGCCCCCTGAGATGATACAT 57.877 50.000 0.00 0.00 0.00 2.29
3874 6711 1.770658 CTTGCCCCCTGAGATGATACA 59.229 52.381 0.00 0.00 0.00 2.29
3875 6712 1.771255 ACTTGCCCCCTGAGATGATAC 59.229 52.381 0.00 0.00 0.00 2.24
3876 6713 2.196742 ACTTGCCCCCTGAGATGATA 57.803 50.000 0.00 0.00 0.00 2.15
3877 6714 1.302907 AACTTGCCCCCTGAGATGAT 58.697 50.000 0.00 0.00 0.00 2.45
3878 6715 1.075601 AAACTTGCCCCCTGAGATGA 58.924 50.000 0.00 0.00 0.00 2.92
3879 6716 1.928868 AAAACTTGCCCCCTGAGATG 58.071 50.000 0.00 0.00 0.00 2.90
3880 6717 2.110721 AGAAAAACTTGCCCCCTGAGAT 59.889 45.455 0.00 0.00 0.00 2.75
3881 6718 1.499007 AGAAAAACTTGCCCCCTGAGA 59.501 47.619 0.00 0.00 0.00 3.27
3882 6719 1.889170 GAGAAAAACTTGCCCCCTGAG 59.111 52.381 0.00 0.00 0.00 3.35
3883 6720 1.216678 TGAGAAAAACTTGCCCCCTGA 59.783 47.619 0.00 0.00 0.00 3.86
3884 6721 1.615392 CTGAGAAAAACTTGCCCCCTG 59.385 52.381 0.00 0.00 0.00 4.45
3885 6722 1.217942 ACTGAGAAAAACTTGCCCCCT 59.782 47.619 0.00 0.00 0.00 4.79
3886 6723 1.704641 ACTGAGAAAAACTTGCCCCC 58.295 50.000 0.00 0.00 0.00 5.40
3887 6724 4.321974 CCATAACTGAGAAAAACTTGCCCC 60.322 45.833 0.00 0.00 0.00 5.80
3888 6725 4.522789 TCCATAACTGAGAAAAACTTGCCC 59.477 41.667 0.00 0.00 0.00 5.36
3889 6726 5.335976 CCTCCATAACTGAGAAAAACTTGCC 60.336 44.000 0.00 0.00 31.26 4.52
3890 6727 5.335976 CCCTCCATAACTGAGAAAAACTTGC 60.336 44.000 0.00 0.00 31.26 4.01
3891 6728 6.003950 TCCCTCCATAACTGAGAAAAACTTG 58.996 40.000 0.00 0.00 31.26 3.16
3892 6729 6.183361 ACTCCCTCCATAACTGAGAAAAACTT 60.183 38.462 0.00 0.00 31.26 2.66
3893 6730 5.310857 ACTCCCTCCATAACTGAGAAAAACT 59.689 40.000 0.00 0.00 31.26 2.66
3894 6731 5.561679 ACTCCCTCCATAACTGAGAAAAAC 58.438 41.667 0.00 0.00 31.26 2.43
3895 6732 5.843019 ACTCCCTCCATAACTGAGAAAAA 57.157 39.130 0.00 0.00 31.26 1.94
3896 6733 5.783360 TGTACTCCCTCCATAACTGAGAAAA 59.217 40.000 0.00 0.00 31.26 2.29
3897 6734 5.338632 TGTACTCCCTCCATAACTGAGAAA 58.661 41.667 0.00 0.00 31.26 2.52
3898 6735 4.942944 TGTACTCCCTCCATAACTGAGAA 58.057 43.478 0.00 0.00 31.26 2.87
3899 6736 4.603094 TGTACTCCCTCCATAACTGAGA 57.397 45.455 0.00 0.00 31.26 3.27
3900 6737 4.712337 ACTTGTACTCCCTCCATAACTGAG 59.288 45.833 0.00 0.00 0.00 3.35
3901 6738 4.684724 ACTTGTACTCCCTCCATAACTGA 58.315 43.478 0.00 0.00 0.00 3.41
3902 6739 5.422214 AACTTGTACTCCCTCCATAACTG 57.578 43.478 0.00 0.00 0.00 3.16
3903 6740 6.154706 CAGTAACTTGTACTCCCTCCATAACT 59.845 42.308 0.00 0.00 0.00 2.24
3904 6741 6.338937 CAGTAACTTGTACTCCCTCCATAAC 58.661 44.000 0.00 0.00 0.00 1.89
3905 6742 5.424252 CCAGTAACTTGTACTCCCTCCATAA 59.576 44.000 0.00 0.00 0.00 1.90
3906 6743 4.960469 CCAGTAACTTGTACTCCCTCCATA 59.040 45.833 0.00 0.00 0.00 2.74
3907 6744 3.775316 CCAGTAACTTGTACTCCCTCCAT 59.225 47.826 0.00 0.00 0.00 3.41
3908 6745 3.170717 CCAGTAACTTGTACTCCCTCCA 58.829 50.000 0.00 0.00 0.00 3.86
3909 6746 2.500504 CCCAGTAACTTGTACTCCCTCC 59.499 54.545 0.00 0.00 0.00 4.30
3910 6747 3.195182 GTCCCAGTAACTTGTACTCCCTC 59.805 52.174 0.00 0.00 0.00 4.30
3911 6748 3.171528 GTCCCAGTAACTTGTACTCCCT 58.828 50.000 0.00 0.00 0.00 4.20
3912 6749 2.094338 CGTCCCAGTAACTTGTACTCCC 60.094 54.545 0.00 0.00 0.00 4.30
3913 6750 2.094338 CCGTCCCAGTAACTTGTACTCC 60.094 54.545 0.00 0.00 0.00 3.85
3914 6751 2.821969 TCCGTCCCAGTAACTTGTACTC 59.178 50.000 0.00 0.00 0.00 2.59
3915 6752 2.560105 GTCCGTCCCAGTAACTTGTACT 59.440 50.000 0.00 0.00 0.00 2.73
3916 6753 2.669391 CGTCCGTCCCAGTAACTTGTAC 60.669 54.545 0.00 0.00 0.00 2.90
3917 6754 1.541147 CGTCCGTCCCAGTAACTTGTA 59.459 52.381 0.00 0.00 0.00 2.41
3918 6755 0.316204 CGTCCGTCCCAGTAACTTGT 59.684 55.000 0.00 0.00 0.00 3.16
3919 6756 0.389426 CCGTCCGTCCCAGTAACTTG 60.389 60.000 0.00 0.00 0.00 3.16
3920 6757 1.538687 CCCGTCCGTCCCAGTAACTT 61.539 60.000 0.00 0.00 0.00 2.66
3921 6758 1.980772 CCCGTCCGTCCCAGTAACT 60.981 63.158 0.00 0.00 0.00 2.24
3922 6759 2.575461 CCCGTCCGTCCCAGTAAC 59.425 66.667 0.00 0.00 0.00 2.50
3923 6760 3.384532 GCCCGTCCGTCCCAGTAA 61.385 66.667 0.00 0.00 0.00 2.24
3924 6761 4.371417 AGCCCGTCCGTCCCAGTA 62.371 66.667 0.00 0.00 0.00 2.74
3930 6767 4.500116 GAGCTCAGCCCGTCCGTC 62.500 72.222 9.40 0.00 0.00 4.79
3932 6769 4.504916 CAGAGCTCAGCCCGTCCG 62.505 72.222 17.77 0.00 0.00 4.79
3933 6770 2.430610 ATCAGAGCTCAGCCCGTCC 61.431 63.158 17.77 0.00 0.00 4.79
3934 6771 1.227205 CATCAGAGCTCAGCCCGTC 60.227 63.158 17.77 0.00 0.00 4.79
3935 6772 1.683707 TCATCAGAGCTCAGCCCGT 60.684 57.895 17.77 0.00 0.00 5.28
3936 6773 1.227205 GTCATCAGAGCTCAGCCCG 60.227 63.158 17.77 0.00 0.00 6.13
3937 6774 0.104671 GAGTCATCAGAGCTCAGCCC 59.895 60.000 17.77 0.00 0.00 5.19
3938 6775 0.248990 CGAGTCATCAGAGCTCAGCC 60.249 60.000 17.77 0.00 0.00 4.85
3939 6776 0.455410 ACGAGTCATCAGAGCTCAGC 59.545 55.000 17.77 0.00 0.00 4.26
3940 6777 1.742268 TGACGAGTCATCAGAGCTCAG 59.258 52.381 17.77 8.39 34.14 3.35
3941 6778 1.826385 TGACGAGTCATCAGAGCTCA 58.174 50.000 17.77 0.00 34.14 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.