Multiple sequence alignment - TraesCS6B01G313300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G313300 chr6B 100.000 4494 0 0 1 4494 561277342 561272849 0.000000e+00 8299
1 TraesCS6B01G313300 chr6B 81.603 761 106 29 2329 3076 561151965 561151226 2.310000e-167 599
2 TraesCS6B01G313300 chr6B 80.696 632 88 21 1690 2301 561153057 561152440 1.140000e-125 460
3 TraesCS6B01G313300 chr6B 86.000 350 42 5 3176 3524 561150808 561150465 7.100000e-98 368
4 TraesCS6B01G313300 chr6D 98.769 2193 25 2 1659 3851 374108830 374106640 0.000000e+00 3899
5 TraesCS6B01G313300 chr6D 95.433 1073 33 8 520 1585 374109891 374108828 0.000000e+00 1696
6 TraesCS6B01G313300 chr6D 90.214 654 55 9 3846 4493 420532791 420532141 0.000000e+00 845
7 TraesCS6B01G313300 chr6D 82.714 700 90 26 2389 3075 373424268 373423587 1.080000e-165 593
8 TraesCS6B01G313300 chr6D 81.240 629 88 18 1690 2301 373425394 373424779 8.740000e-132 481
9 TraesCS6B01G313300 chr6D 86.080 352 39 8 3176 3524 373423070 373422726 1.970000e-98 370
10 TraesCS6B01G313300 chr6D 87.660 235 15 4 239 471 374110109 374109887 1.240000e-65 261
11 TraesCS6B01G313300 chr6D 84.483 116 15 3 127 241 374110346 374110233 1.320000e-20 111
12 TraesCS6B01G313300 chr6A 94.526 2192 88 16 1686 3850 516161353 516159167 0.000000e+00 3354
13 TraesCS6B01G313300 chr6A 92.689 766 47 5 823 1585 516162148 516161389 0.000000e+00 1096
14 TraesCS6B01G313300 chr6A 83.006 712 95 21 2329 3028 515673272 515672575 4.940000e-174 621
15 TraesCS6B01G313300 chr6A 80.635 630 91 19 1690 2301 515674364 515673748 4.100000e-125 459
16 TraesCS6B01G313300 chr6A 86.080 352 39 8 3176 3524 515672047 515671703 1.970000e-98 370
17 TraesCS6B01G313300 chr6A 83.186 452 28 24 93 540 516164253 516163846 1.970000e-98 370
18 TraesCS6B01G313300 chr2B 91.679 661 46 6 3841 4494 714797929 714797271 0.000000e+00 907
19 TraesCS6B01G313300 chr2B 97.531 81 0 1 1582 1660 675337153 675337233 2.180000e-28 137
20 TraesCS6B01G313300 chr3D 91.091 651 46 12 3847 4490 396431302 396431947 0.000000e+00 870
21 TraesCS6B01G313300 chr3D 89.893 653 57 9 3846 4493 83388812 83388164 0.000000e+00 832
22 TraesCS6B01G313300 chr5D 89.985 669 55 12 3831 4493 45204153 45203491 0.000000e+00 854
23 TraesCS6B01G313300 chr5D 90.137 659 55 10 3840 4493 117834543 117835196 0.000000e+00 848
24 TraesCS6B01G313300 chr5D 96.386 83 1 2 1579 1660 180255715 180255634 7.840000e-28 135
25 TraesCS6B01G313300 chr7D 90.046 653 55 9 3846 4493 159076436 159077083 0.000000e+00 837
26 TraesCS6B01G313300 chr7D 76.744 387 64 20 2628 3011 184099039 184099402 4.590000e-45 193
27 TraesCS6B01G313300 chr7D 95.455 88 2 1 1582 1667 199127704 199127617 6.060000e-29 139
28 TraesCS6B01G313300 chr7D 97.531 81 0 1 1582 1660 199127623 199127703 2.180000e-28 137
29 TraesCS6B01G313300 chr2D 89.924 655 57 9 3844 4493 451010984 451010334 0.000000e+00 835
30 TraesCS6B01G313300 chr7B 89.818 658 56 10 3842 4493 57696875 57696223 0.000000e+00 833
31 TraesCS6B01G313300 chr7B 95.294 85 2 1 1580 1662 529671387 529671303 2.820000e-27 134
32 TraesCS6B01G313300 chr7A 85.034 147 22 0 2643 2789 186641565 186641419 2.800000e-32 150
33 TraesCS6B01G313300 chr3B 97.561 82 1 1 1579 1660 59326009 59325929 6.060000e-29 139
34 TraesCS6B01G313300 chr3B 91.579 95 5 2 1570 1661 431258882 431258788 1.310000e-25 128
35 TraesCS6B01G313300 chr5A 96.386 83 2 1 1578 1660 275334963 275335044 7.840000e-28 135
36 TraesCS6B01G313300 chr4A 94.253 87 4 1 1583 1668 18683388 18683302 1.010000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G313300 chr6B 561272849 561277342 4493 True 8299.000000 8299 100.000000 1 4494 1 chr6B.!!$R1 4493
1 TraesCS6B01G313300 chr6B 561150465 561153057 2592 True 475.666667 599 82.766333 1690 3524 3 chr6B.!!$R2 1834
2 TraesCS6B01G313300 chr6D 374106640 374110346 3706 True 1491.750000 3899 91.586250 127 3851 4 chr6D.!!$R3 3724
3 TraesCS6B01G313300 chr6D 420532141 420532791 650 True 845.000000 845 90.214000 3846 4493 1 chr6D.!!$R1 647
4 TraesCS6B01G313300 chr6D 373422726 373425394 2668 True 481.333333 593 83.344667 1690 3524 3 chr6D.!!$R2 1834
5 TraesCS6B01G313300 chr6A 516159167 516164253 5086 True 1606.666667 3354 90.133667 93 3850 3 chr6A.!!$R2 3757
6 TraesCS6B01G313300 chr6A 515671703 515674364 2661 True 483.333333 621 83.240333 1690 3524 3 chr6A.!!$R1 1834
7 TraesCS6B01G313300 chr2B 714797271 714797929 658 True 907.000000 907 91.679000 3841 4494 1 chr2B.!!$R1 653
8 TraesCS6B01G313300 chr3D 396431302 396431947 645 False 870.000000 870 91.091000 3847 4490 1 chr3D.!!$F1 643
9 TraesCS6B01G313300 chr3D 83388164 83388812 648 True 832.000000 832 89.893000 3846 4493 1 chr3D.!!$R1 647
10 TraesCS6B01G313300 chr5D 45203491 45204153 662 True 854.000000 854 89.985000 3831 4493 1 chr5D.!!$R1 662
11 TraesCS6B01G313300 chr5D 117834543 117835196 653 False 848.000000 848 90.137000 3840 4493 1 chr5D.!!$F1 653
12 TraesCS6B01G313300 chr7D 159076436 159077083 647 False 837.000000 837 90.046000 3846 4493 1 chr7D.!!$F1 647
13 TraesCS6B01G313300 chr2D 451010334 451010984 650 True 835.000000 835 89.924000 3844 4493 1 chr2D.!!$R1 649
14 TraesCS6B01G313300 chr7B 57696223 57696875 652 True 833.000000 833 89.818000 3842 4493 1 chr7B.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.040646 TACCAGTCCATCACCCTCGT 59.959 55.0 0.00 0.00 0.00 4.18 F
595 741 0.100503 CCGATTTGTGGCGGGAAATC 59.899 55.0 0.00 0.00 43.67 2.17 F
1598 3278 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.0 0.00 0.00 0.00 4.00 F
1599 3279 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.0 0.00 0.00 0.00 2.74 F
2039 3746 1.656652 GCTGGCTATCACACGTGAAT 58.343 50.0 25.01 16.97 43.58 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 3323 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.0 0.00 4.00 R
1645 3325 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.0 0.00 4.46 R
3053 5232 2.102578 ACCATGCCAAAAGATAGCACC 58.897 47.619 0.00 0.0 39.77 5.01 R
3315 5914 4.380843 TGAACATACACCCAATGAGGTT 57.619 40.909 0.00 0.0 38.39 3.50 R
3949 6566 1.445942 CACCAATATCGGCCCGAGT 59.554 57.895 13.12 0.0 39.91 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.156736 AAAATGGCCGAAGAGTGACG 58.843 50.000 0.00 0.00 0.00 4.35
36 37 0.099082 CCGAAGAGTGACGGTCTAGC 59.901 60.000 9.88 0.17 43.53 3.42
37 38 0.803117 CGAAGAGTGACGGTCTAGCA 59.197 55.000 9.88 0.00 0.00 3.49
38 39 1.202087 CGAAGAGTGACGGTCTAGCAG 60.202 57.143 9.88 0.00 0.00 4.24
39 40 0.528470 AAGAGTGACGGTCTAGCAGC 59.472 55.000 9.88 0.00 0.00 5.25
40 41 1.139947 GAGTGACGGTCTAGCAGCC 59.860 63.158 9.88 0.00 0.00 4.85
41 42 2.184579 GTGACGGTCTAGCAGCCC 59.815 66.667 9.88 0.00 0.00 5.19
42 43 3.449227 TGACGGTCTAGCAGCCCG 61.449 66.667 9.88 6.30 46.93 6.13
43 44 4.874977 GACGGTCTAGCAGCCCGC 62.875 72.222 7.65 0.00 45.49 6.13
60 61 4.368808 CTGCAACCGCGACCGTTG 62.369 66.667 18.58 18.58 42.97 4.10
61 62 4.893601 TGCAACCGCGACCGTTGA 62.894 61.111 24.62 11.07 42.97 3.18
62 63 3.419759 GCAACCGCGACCGTTGAT 61.420 61.111 24.62 0.00 31.64 2.57
63 64 2.776072 CAACCGCGACCGTTGATC 59.224 61.111 18.21 0.00 31.64 2.92
64 65 2.433664 AACCGCGACCGTTGATCC 60.434 61.111 8.23 0.00 0.00 3.36
65 66 4.789075 ACCGCGACCGTTGATCCG 62.789 66.667 8.23 0.00 0.00 4.18
68 69 2.103538 GCGACCGTTGATCCGCTA 59.896 61.111 4.78 0.00 43.75 4.26
69 70 2.228914 GCGACCGTTGATCCGCTAC 61.229 63.158 4.78 0.00 43.75 3.58
70 71 1.588139 CGACCGTTGATCCGCTACC 60.588 63.158 0.00 0.00 0.00 3.18
71 72 1.514087 GACCGTTGATCCGCTACCA 59.486 57.895 0.00 0.00 0.00 3.25
72 73 0.527817 GACCGTTGATCCGCTACCAG 60.528 60.000 0.00 0.00 0.00 4.00
73 74 1.255667 ACCGTTGATCCGCTACCAGT 61.256 55.000 0.00 0.00 0.00 4.00
74 75 0.527817 CCGTTGATCCGCTACCAGTC 60.528 60.000 0.00 0.00 0.00 3.51
75 76 0.527817 CGTTGATCCGCTACCAGTCC 60.528 60.000 0.00 0.00 0.00 3.85
76 77 0.535335 GTTGATCCGCTACCAGTCCA 59.465 55.000 0.00 0.00 0.00 4.02
77 78 1.139058 GTTGATCCGCTACCAGTCCAT 59.861 52.381 0.00 0.00 0.00 3.41
78 79 1.040646 TGATCCGCTACCAGTCCATC 58.959 55.000 0.00 0.00 0.00 3.51
79 80 1.040646 GATCCGCTACCAGTCCATCA 58.959 55.000 0.00 0.00 0.00 3.07
80 81 0.753262 ATCCGCTACCAGTCCATCAC 59.247 55.000 0.00 0.00 0.00 3.06
81 82 1.144057 CCGCTACCAGTCCATCACC 59.856 63.158 0.00 0.00 0.00 4.02
82 83 1.144057 CGCTACCAGTCCATCACCC 59.856 63.158 0.00 0.00 0.00 4.61
83 84 1.330655 CGCTACCAGTCCATCACCCT 61.331 60.000 0.00 0.00 0.00 4.34
84 85 0.466124 GCTACCAGTCCATCACCCTC 59.534 60.000 0.00 0.00 0.00 4.30
85 86 0.747255 CTACCAGTCCATCACCCTCG 59.253 60.000 0.00 0.00 0.00 4.63
86 87 0.040646 TACCAGTCCATCACCCTCGT 59.959 55.000 0.00 0.00 0.00 4.18
87 88 0.836400 ACCAGTCCATCACCCTCGTT 60.836 55.000 0.00 0.00 0.00 3.85
88 89 1.191535 CCAGTCCATCACCCTCGTTA 58.808 55.000 0.00 0.00 0.00 3.18
89 90 1.134788 CCAGTCCATCACCCTCGTTAC 60.135 57.143 0.00 0.00 0.00 2.50
90 91 1.825474 CAGTCCATCACCCTCGTTACT 59.175 52.381 0.00 0.00 0.00 2.24
91 92 2.233922 CAGTCCATCACCCTCGTTACTT 59.766 50.000 0.00 0.00 0.00 2.24
100 101 1.402456 CCCTCGTTACTTGTGACCTCG 60.402 57.143 0.00 0.00 0.00 4.63
111 112 2.202892 GACCTCGTCCAATCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
112 113 4.143333 ACCTCGTCCAATCGCCCG 62.143 66.667 0.00 0.00 0.00 6.13
113 114 4.143333 CCTCGTCCAATCGCCCGT 62.143 66.667 0.00 0.00 0.00 5.28
234 246 0.235665 CTGACGAGCACGCAAACATT 59.764 50.000 2.62 0.00 43.96 2.71
235 247 0.234625 TGACGAGCACGCAAACATTC 59.765 50.000 2.62 0.00 43.96 2.67
237 249 0.660488 ACGAGCACGCAAACATTCAA 59.340 45.000 2.62 0.00 43.96 2.69
275 414 1.356738 TCTACTGTTCGGGAGGGAGAA 59.643 52.381 0.00 0.00 0.00 2.87
276 415 1.751924 CTACTGTTCGGGAGGGAGAAG 59.248 57.143 0.00 0.00 0.00 2.85
277 416 0.114560 ACTGTTCGGGAGGGAGAAGA 59.885 55.000 0.00 0.00 0.00 2.87
278 417 0.820871 CTGTTCGGGAGGGAGAAGAG 59.179 60.000 0.00 0.00 32.72 2.85
279 418 0.408309 TGTTCGGGAGGGAGAAGAGA 59.592 55.000 0.00 0.00 0.00 3.10
357 496 2.587194 CCATCTCCGCTCGGCTTG 60.587 66.667 2.96 1.30 34.68 4.01
425 565 0.932399 CGTTTCTCCGTCGTTTTGGT 59.068 50.000 0.00 0.00 0.00 3.67
447 587 4.009675 TGATCCTTCTGTGAATTTTCCCG 58.990 43.478 0.00 0.00 0.00 5.14
448 588 3.780804 TCCTTCTGTGAATTTTCCCGA 57.219 42.857 0.00 0.00 0.00 5.14
489 630 2.965831 CTCGATTAGGGGTGAATCTGGA 59.034 50.000 0.00 0.00 32.17 3.86
490 631 2.965831 TCGATTAGGGGTGAATCTGGAG 59.034 50.000 0.00 0.00 32.17 3.86
491 632 2.700897 CGATTAGGGGTGAATCTGGAGT 59.299 50.000 0.00 0.00 32.17 3.85
492 633 3.134804 CGATTAGGGGTGAATCTGGAGTT 59.865 47.826 0.00 0.00 32.17 3.01
493 634 4.709250 GATTAGGGGTGAATCTGGAGTTC 58.291 47.826 0.00 0.00 31.74 3.01
494 635 2.350863 AGGGGTGAATCTGGAGTTCT 57.649 50.000 0.00 0.00 0.00 3.01
495 636 1.912043 AGGGGTGAATCTGGAGTTCTG 59.088 52.381 0.00 0.00 0.00 3.02
496 637 1.065126 GGGGTGAATCTGGAGTTCTGG 60.065 57.143 0.00 0.00 0.00 3.86
497 638 1.909302 GGGTGAATCTGGAGTTCTGGA 59.091 52.381 0.00 0.00 0.00 3.86
498 639 2.355209 GGGTGAATCTGGAGTTCTGGAC 60.355 54.545 0.00 0.00 0.00 4.02
514 655 2.924101 ACGGTGGGCGGGTTAAGA 60.924 61.111 0.00 0.00 0.00 2.10
540 681 4.123545 CCTAGGGTTTGGGGCGGG 62.124 72.222 0.00 0.00 0.00 6.13
565 711 1.340017 CGTGGGGAATCATTCAGTGGT 60.340 52.381 0.00 0.00 0.00 4.16
571 717 3.466836 GGAATCATTCAGTGGTATGCGA 58.533 45.455 0.00 0.00 0.00 5.10
595 741 0.100503 CCGATTTGTGGCGGGAAATC 59.899 55.000 0.00 0.00 43.67 2.17
637 783 1.293924 GCTGCTAATCATGCGACTGT 58.706 50.000 0.00 0.00 0.00 3.55
638 784 1.667724 GCTGCTAATCATGCGACTGTT 59.332 47.619 0.00 0.00 0.00 3.16
639 785 2.538333 GCTGCTAATCATGCGACTGTTG 60.538 50.000 0.00 0.00 0.00 3.33
640 786 2.931969 CTGCTAATCATGCGACTGTTGA 59.068 45.455 0.00 0.00 0.00 3.18
641 787 2.931969 TGCTAATCATGCGACTGTTGAG 59.068 45.455 0.00 0.00 0.00 3.02
642 788 2.932614 GCTAATCATGCGACTGTTGAGT 59.067 45.455 0.00 0.00 33.98 3.41
647 793 1.866601 CATGCGACTGTTGAGTGTTGA 59.133 47.619 0.00 0.00 30.16 3.18
650 796 1.258982 GCGACTGTTGAGTGTTGACTG 59.741 52.381 0.00 0.00 30.16 3.51
651 797 2.809446 CGACTGTTGAGTGTTGACTGA 58.191 47.619 0.00 0.00 30.16 3.41
675 821 1.570803 TCGATCCGTTTCCCCCTTTA 58.429 50.000 0.00 0.00 0.00 1.85
709 855 1.599797 CCACCCCGTGTTGACTTCC 60.600 63.158 0.00 0.00 0.00 3.46
797 943 3.196039 TGCCGTGGTGCTAATAGAAACTA 59.804 43.478 0.00 0.00 0.00 2.24
809 955 1.214589 GAAACTACGCGGAGAGCCA 59.785 57.895 28.55 0.00 44.76 4.75
843 2520 6.391227 AGTAACTGCTGTTGTGCTTAATTT 57.609 33.333 18.22 0.00 37.59 1.82
956 2634 0.961019 CTGATGGTGGTGGTGTTTGG 59.039 55.000 0.00 0.00 0.00 3.28
991 2670 1.271982 TGTGACGCTTCTCTCCTAGGT 60.272 52.381 9.08 0.00 0.00 3.08
1093 2772 2.182842 GGCGATGACAGGCACCATC 61.183 63.158 3.97 0.00 36.67 3.51
1119 2798 1.740025 GGAGCAAGGAACTCCGATTTG 59.260 52.381 0.00 0.00 44.10 2.32
1201 2880 1.274167 TCATCGCCGTTGGAACTAAGT 59.726 47.619 0.00 0.00 0.00 2.24
1338 3017 6.887376 TTCGATTATGTAGCTCTGTTTGTC 57.113 37.500 0.00 0.00 0.00 3.18
1517 3197 5.295540 GGGTTGTCTCAATCTATGAAGCTTC 59.704 44.000 19.89 19.89 37.67 3.86
1585 3265 5.222048 TGGCCCTGTCTTTTTGTTATCTACT 60.222 40.000 0.00 0.00 0.00 2.57
1586 3266 5.354513 GGCCCTGTCTTTTTGTTATCTACTC 59.645 44.000 0.00 0.00 0.00 2.59
1587 3267 5.354513 GCCCTGTCTTTTTGTTATCTACTCC 59.645 44.000 0.00 0.00 0.00 3.85
1588 3268 5.880887 CCCTGTCTTTTTGTTATCTACTCCC 59.119 44.000 0.00 0.00 0.00 4.30
1589 3269 6.296489 CCCTGTCTTTTTGTTATCTACTCCCT 60.296 42.308 0.00 0.00 0.00 4.20
1590 3270 6.819146 CCTGTCTTTTTGTTATCTACTCCCTC 59.181 42.308 0.00 0.00 0.00 4.30
1591 3271 6.708285 TGTCTTTTTGTTATCTACTCCCTCC 58.292 40.000 0.00 0.00 0.00 4.30
1592 3272 5.811100 GTCTTTTTGTTATCTACTCCCTCCG 59.189 44.000 0.00 0.00 0.00 4.63
1593 3273 5.482878 TCTTTTTGTTATCTACTCCCTCCGT 59.517 40.000 0.00 0.00 0.00 4.69
1594 3274 4.996788 TTTGTTATCTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
1595 3275 2.941480 TGTTATCTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
1596 3276 2.237643 GTTATCTACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
1597 3277 1.526315 TATCTACTCCCTCCGTCCCA 58.474 55.000 0.00 0.00 0.00 4.37
1598 3278 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
1599 3279 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
1600 3280 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
1601 3281 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
1602 3282 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
1603 3283 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1604 3284 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1605 3285 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1606 3286 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1607 3287 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1608 3288 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1609 3289 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1610 3290 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1611 3291 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1612 3292 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
1613 3293 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1614 3294 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1615 3295 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1616 3296 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
1617 3297 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
1618 3298 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
1619 3299 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
1620 3300 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
1648 3328 9.675464 AGTCAAAAACGTTCTTATATTATGGGA 57.325 29.630 0.00 0.00 0.00 4.37
1649 3329 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
1650 3330 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
1651 3331 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
1652 3332 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1653 3333 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1654 3334 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1655 3335 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1656 3336 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1657 3337 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1658 3338 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1659 3339 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1693 3383 2.103771 TGCAAGTCTCTTCTCTGCTTGT 59.896 45.455 0.00 0.00 38.84 3.16
1727 3419 8.286800 TGTAAAATGTTTCTATTGTTCCGTCTG 58.713 33.333 0.00 0.00 0.00 3.51
1824 3517 6.147821 GTCTTGCTCAGCTGTTAAGTTTATGA 59.852 38.462 14.67 1.26 0.00 2.15
2039 3746 1.656652 GCTGGCTATCACACGTGAAT 58.343 50.000 25.01 16.97 43.58 2.57
3053 5232 9.656040 TCAAACCTTTTGAATCAAATCCATATG 57.344 29.630 9.41 5.64 33.19 1.78
3264 5863 9.985318 GATGATAATGCTCTTACTAATGCAATC 57.015 33.333 0.00 0.00 38.96 2.67
3315 5914 6.265196 GTCATGTCCCCTTTATTAATGATGCA 59.735 38.462 0.00 0.00 0.00 3.96
3468 6068 4.022935 TCAGTTTGATTGTCCAGTGAATGC 60.023 41.667 0.00 0.00 0.00 3.56
3766 6373 3.561725 AGCTGACAGAACTTTGCAGTTAC 59.438 43.478 6.65 0.00 43.79 2.50
3949 6566 2.592287 AAGCCCGTTTTTCGCCGA 60.592 55.556 0.00 0.00 38.35 5.54
3970 6587 2.515901 GGGCCGATATTGGTGCCT 59.484 61.111 10.85 0.00 43.50 4.75
4065 6687 4.103103 CTGTCGGCGAGTCGAGCA 62.103 66.667 18.61 2.05 40.01 4.26
4069 6691 3.506096 CGGCGAGTCGAGCACCTA 61.506 66.667 18.61 0.00 36.08 3.08
4088 6710 1.848886 ATTCCCGCCGTTTCTTCCCT 61.849 55.000 0.00 0.00 0.00 4.20
4099 6721 0.114364 TTCTTCCCTGCTTTTCCCCC 59.886 55.000 0.00 0.00 0.00 5.40
4186 6809 3.067846 GCACCGAAGAAGTACGCGC 62.068 63.158 5.73 0.00 0.00 6.86
4226 6849 3.310860 GACCGCCCCTGTCGTTCAT 62.311 63.158 0.00 0.00 0.00 2.57
4243 6866 0.177604 CATCCGAAGCAGAGGAAGCT 59.822 55.000 0.00 0.00 45.97 3.74
4249 6872 0.839853 AAGCAGAGGAAGCTGAGGGT 60.840 55.000 0.00 0.00 42.53 4.34
4313 6936 0.968901 TGGAAGTACAGCGACGGGAT 60.969 55.000 0.00 0.00 0.00 3.85
4349 6972 4.664677 CGGAATAGGGCCCTCGCG 62.665 72.222 32.80 15.96 35.02 5.87
4361 6984 4.129737 CTCGCGAAGAAGGCCCGA 62.130 66.667 11.33 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.535462 CGTCACTCTTCGGCCATTTTT 59.465 47.619 2.24 0.00 0.00 1.94
10 11 1.156736 CGTCACTCTTCGGCCATTTT 58.843 50.000 2.24 0.00 0.00 1.82
11 12 0.673644 CCGTCACTCTTCGGCCATTT 60.674 55.000 2.24 0.00 40.28 2.32
12 13 1.079127 CCGTCACTCTTCGGCCATT 60.079 57.895 2.24 0.00 40.28 3.16
13 14 2.579201 CCGTCACTCTTCGGCCAT 59.421 61.111 2.24 0.00 40.28 4.40
18 19 0.803117 TGCTAGACCGTCACTCTTCG 59.197 55.000 0.40 0.00 0.00 3.79
19 20 1.468395 GCTGCTAGACCGTCACTCTTC 60.468 57.143 0.40 0.00 0.00 2.87
20 21 0.528470 GCTGCTAGACCGTCACTCTT 59.472 55.000 0.40 0.00 0.00 2.85
21 22 1.316706 GGCTGCTAGACCGTCACTCT 61.317 60.000 0.40 0.00 0.00 3.24
22 23 1.139947 GGCTGCTAGACCGTCACTC 59.860 63.158 0.40 0.00 0.00 3.51
23 24 2.352032 GGGCTGCTAGACCGTCACT 61.352 63.158 0.40 0.00 30.77 3.41
24 25 2.184579 GGGCTGCTAGACCGTCAC 59.815 66.667 0.40 0.00 30.77 3.67
43 44 4.368808 CAACGGTCGCGGTTGCAG 62.369 66.667 6.13 0.00 42.97 4.41
44 45 4.893601 TCAACGGTCGCGGTTGCA 62.894 61.111 18.23 7.84 41.99 4.08
45 46 3.362851 GATCAACGGTCGCGGTTGC 62.363 63.158 18.23 5.54 41.99 4.17
46 47 2.736682 GGATCAACGGTCGCGGTTG 61.737 63.158 17.29 17.29 43.04 3.77
47 48 2.433664 GGATCAACGGTCGCGGTT 60.434 61.111 6.13 0.00 0.00 4.44
48 49 4.789075 CGGATCAACGGTCGCGGT 62.789 66.667 6.13 0.00 0.00 5.68
51 52 2.103538 TAGCGGATCAACGGTCGC 59.896 61.111 3.93 3.93 44.18 5.19
52 53 1.588139 GGTAGCGGATCAACGGTCG 60.588 63.158 0.00 0.00 44.18 4.79
53 54 0.527817 CTGGTAGCGGATCAACGGTC 60.528 60.000 0.00 0.00 44.18 4.79
55 56 0.527817 GACTGGTAGCGGATCAACGG 60.528 60.000 7.97 0.00 0.00 4.44
56 57 0.527817 GGACTGGTAGCGGATCAACG 60.528 60.000 7.97 0.00 0.00 4.10
57 58 0.535335 TGGACTGGTAGCGGATCAAC 59.465 55.000 7.97 0.00 0.00 3.18
58 59 1.412710 GATGGACTGGTAGCGGATCAA 59.587 52.381 7.97 0.00 0.00 2.57
59 60 1.040646 GATGGACTGGTAGCGGATCA 58.959 55.000 7.97 5.57 0.00 2.92
60 61 1.040646 TGATGGACTGGTAGCGGATC 58.959 55.000 7.97 0.93 0.00 3.36
61 62 0.753262 GTGATGGACTGGTAGCGGAT 59.247 55.000 7.97 0.00 0.00 4.18
62 63 1.327690 GGTGATGGACTGGTAGCGGA 61.328 60.000 7.97 0.00 0.00 5.54
63 64 1.144057 GGTGATGGACTGGTAGCGG 59.856 63.158 0.00 0.00 0.00 5.52
64 65 1.144057 GGGTGATGGACTGGTAGCG 59.856 63.158 0.00 0.00 0.00 4.26
65 66 0.466124 GAGGGTGATGGACTGGTAGC 59.534 60.000 0.00 0.00 0.00 3.58
66 67 0.747255 CGAGGGTGATGGACTGGTAG 59.253 60.000 0.00 0.00 0.00 3.18
67 68 0.040646 ACGAGGGTGATGGACTGGTA 59.959 55.000 0.00 0.00 0.00 3.25
68 69 0.836400 AACGAGGGTGATGGACTGGT 60.836 55.000 0.00 0.00 0.00 4.00
69 70 1.134788 GTAACGAGGGTGATGGACTGG 60.135 57.143 0.00 0.00 0.00 4.00
70 71 1.825474 AGTAACGAGGGTGATGGACTG 59.175 52.381 0.00 0.00 0.00 3.51
71 72 2.233305 AGTAACGAGGGTGATGGACT 57.767 50.000 0.00 0.00 0.00 3.85
72 73 2.028385 ACAAGTAACGAGGGTGATGGAC 60.028 50.000 0.00 0.00 0.00 4.02
73 74 2.028476 CACAAGTAACGAGGGTGATGGA 60.028 50.000 0.00 0.00 0.00 3.41
74 75 2.028476 TCACAAGTAACGAGGGTGATGG 60.028 50.000 0.00 0.00 33.88 3.51
75 76 2.993899 GTCACAAGTAACGAGGGTGATG 59.006 50.000 0.00 0.00 40.23 3.07
76 77 2.028385 GGTCACAAGTAACGAGGGTGAT 60.028 50.000 0.00 0.00 40.23 3.06
77 78 1.342174 GGTCACAAGTAACGAGGGTGA 59.658 52.381 0.00 0.00 36.24 4.02
78 79 1.343465 AGGTCACAAGTAACGAGGGTG 59.657 52.381 0.00 0.00 0.00 4.61
79 80 1.617357 GAGGTCACAAGTAACGAGGGT 59.383 52.381 0.00 0.00 0.00 4.34
80 81 1.402456 CGAGGTCACAAGTAACGAGGG 60.402 57.143 0.00 0.00 0.00 4.30
81 82 1.268899 ACGAGGTCACAAGTAACGAGG 59.731 52.381 0.00 0.00 0.00 4.63
82 83 2.582687 GACGAGGTCACAAGTAACGAG 58.417 52.381 0.00 0.00 32.09 4.18
83 84 1.267806 GGACGAGGTCACAAGTAACGA 59.732 52.381 0.00 0.00 33.68 3.85
84 85 1.001048 TGGACGAGGTCACAAGTAACG 60.001 52.381 0.00 0.00 33.68 3.18
85 86 2.806608 TGGACGAGGTCACAAGTAAC 57.193 50.000 0.00 0.00 33.68 2.50
86 87 3.613193 CGATTGGACGAGGTCACAAGTAA 60.613 47.826 0.00 0.00 33.68 2.24
87 88 2.094906 CGATTGGACGAGGTCACAAGTA 60.095 50.000 0.00 0.00 33.68 2.24
88 89 1.336887 CGATTGGACGAGGTCACAAGT 60.337 52.381 0.00 0.00 33.68 3.16
89 90 1.350193 CGATTGGACGAGGTCACAAG 58.650 55.000 0.00 0.00 33.68 3.16
90 91 0.669318 GCGATTGGACGAGGTCACAA 60.669 55.000 0.00 1.04 33.68 3.33
91 92 1.080093 GCGATTGGACGAGGTCACA 60.080 57.895 0.00 0.00 33.68 3.58
100 101 0.876342 GATCTGACGGGCGATTGGAC 60.876 60.000 0.00 0.00 0.00 4.02
111 112 0.790207 CCGTTGGTGTTGATCTGACG 59.210 55.000 0.00 0.00 0.00 4.35
112 113 1.878953 ACCGTTGGTGTTGATCTGAC 58.121 50.000 0.00 0.00 32.98 3.51
150 151 4.432741 GGAGGAAGCACTGGGGGC 62.433 72.222 0.00 0.00 0.00 5.80
151 152 4.101448 CGGAGGAAGCACTGGGGG 62.101 72.222 0.00 0.00 0.00 5.40
175 176 3.541950 ATGGATGGGAGCGGCGATG 62.542 63.158 12.98 0.00 0.00 3.84
275 414 2.495669 CGGCTTCTTCCTTCTCTTCTCT 59.504 50.000 0.00 0.00 0.00 3.10
276 415 2.887337 CGGCTTCTTCCTTCTCTTCTC 58.113 52.381 0.00 0.00 0.00 2.87
277 416 1.066502 GCGGCTTCTTCCTTCTCTTCT 60.067 52.381 0.00 0.00 0.00 2.85
278 417 1.066502 AGCGGCTTCTTCCTTCTCTTC 60.067 52.381 0.00 0.00 0.00 2.87
279 418 0.980423 AGCGGCTTCTTCCTTCTCTT 59.020 50.000 0.00 0.00 0.00 2.85
366 505 2.374184 CTGTACCTCAGGAGTCAGGAG 58.626 57.143 0.00 3.06 40.23 3.69
367 506 2.516227 CTGTACCTCAGGAGTCAGGA 57.484 55.000 0.00 0.00 40.23 3.86
425 565 4.009675 CGGGAAAATTCACAGAAGGATCA 58.990 43.478 0.00 0.00 0.00 2.92
447 587 4.162690 ATCGCAGTTCCCCGCCTC 62.163 66.667 0.00 0.00 0.00 4.70
448 588 4.162690 GATCGCAGTTCCCCGCCT 62.163 66.667 0.00 0.00 0.00 5.52
474 615 3.107601 CAGAACTCCAGATTCACCCCTA 58.892 50.000 0.00 0.00 0.00 3.53
489 630 4.003788 CGCCCACCGTCCAGAACT 62.004 66.667 0.00 0.00 0.00 3.01
495 636 3.963687 CTTAACCCGCCCACCGTCC 62.964 68.421 0.00 0.00 34.38 4.79
496 637 2.248086 ATCTTAACCCGCCCACCGTC 62.248 60.000 0.00 0.00 34.38 4.79
497 638 2.248086 GATCTTAACCCGCCCACCGT 62.248 60.000 0.00 0.00 34.38 4.83
498 639 1.523032 GATCTTAACCCGCCCACCG 60.523 63.158 0.00 0.00 0.00 4.94
511 652 2.203771 CCCTAGGAGCCGCGATCTT 61.204 63.158 11.48 4.20 0.00 2.40
514 655 2.064581 AAACCCTAGGAGCCGCGAT 61.065 57.895 11.48 0.00 0.00 4.58
540 681 4.875713 ATGATTCCCCACGCCGCC 62.876 66.667 0.00 0.00 0.00 6.13
547 688 3.688126 GCATACCACTGAATGATTCCCCA 60.688 47.826 2.26 0.00 0.00 4.96
565 711 2.217750 CACAAATCGGGGATTCGCATA 58.782 47.619 2.94 0.00 30.29 3.14
571 717 1.752694 CCGCCACAAATCGGGGATT 60.753 57.895 0.00 0.00 41.82 3.01
590 736 0.438830 ACGAGCAAGAACGCGATTTC 59.561 50.000 15.93 7.34 36.63 2.17
595 741 0.449507 CTGAAACGAGCAAGAACGCG 60.450 55.000 3.53 3.53 38.89 6.01
636 782 3.000322 CGAACAGTCAGTCAACACTCAAC 60.000 47.826 0.00 0.00 0.00 3.18
637 783 3.119280 TCGAACAGTCAGTCAACACTCAA 60.119 43.478 0.00 0.00 0.00 3.02
638 784 2.425668 TCGAACAGTCAGTCAACACTCA 59.574 45.455 0.00 0.00 0.00 3.41
639 785 3.079960 TCGAACAGTCAGTCAACACTC 57.920 47.619 0.00 0.00 0.00 3.51
640 786 3.553096 GGATCGAACAGTCAGTCAACACT 60.553 47.826 0.00 0.00 0.00 3.55
641 787 2.731976 GGATCGAACAGTCAGTCAACAC 59.268 50.000 0.00 0.00 0.00 3.32
642 788 2.607038 CGGATCGAACAGTCAGTCAACA 60.607 50.000 0.00 0.00 0.00 3.33
647 793 2.609737 GGAAACGGATCGAACAGTCAGT 60.610 50.000 0.00 0.00 0.00 3.41
650 796 1.356938 GGGAAACGGATCGAACAGTC 58.643 55.000 0.00 0.00 0.00 3.51
651 797 0.036671 GGGGAAACGGATCGAACAGT 60.037 55.000 0.00 0.00 0.00 3.55
675 821 1.676014 GGTGGAATTCGCTAGCACACT 60.676 52.381 16.45 0.00 0.00 3.55
709 855 5.117355 AGCAAACATGATGTGAACAGAAG 57.883 39.130 0.00 0.00 0.00 2.85
809 955 7.385205 CACAACAGCAGTTACTACAAATCTAGT 59.615 37.037 0.00 0.00 35.85 2.57
843 2520 2.027285 TCCACAAGTAATAGCAGCTGCA 60.027 45.455 38.24 24.73 45.16 4.41
956 2634 3.545426 GCGTCACAAACCTGTAAACAGAC 60.545 47.826 11.69 0.00 46.59 3.51
991 2670 3.493176 CCATAACTGCACATCGATCCTCA 60.493 47.826 0.00 0.00 0.00 3.86
1093 2772 1.163554 GAGTTCCTTGCTCCTTGCTG 58.836 55.000 0.00 0.00 43.37 4.41
1119 2798 2.289320 CCGATCTTCATCATCCAGGTCC 60.289 54.545 0.00 0.00 0.00 4.46
1201 2880 5.182190 TGCATTTAAACCAATCTTGCGTAGA 59.818 36.000 0.00 0.00 37.28 2.59
1338 3017 9.159364 TCATGCCTATATAGTAGTTAGTACACG 57.841 37.037 8.92 0.00 33.55 4.49
1517 3197 2.214376 TGTGCAAATGGTAAGGGGAG 57.786 50.000 0.00 0.00 0.00 4.30
1585 3265 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1586 3266 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1587 3267 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1588 3268 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1589 3269 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1590 3270 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
1591 3271 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
1592 3272 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
1593 3273 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
1594 3274 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
1622 3302 9.675464 TCCCATAATATAAGAACGTTTTTGACT 57.325 29.630 13.87 0.00 0.00 3.41
1623 3303 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
1624 3304 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
1625 3305 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
1626 3306 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1627 3307 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1628 3308 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1629 3309 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
1630 3310 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1631 3311 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1632 3312 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1633 3313 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1634 3314 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1635 3315 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1636 3316 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1637 3317 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1638 3318 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1639 3319 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
1640 3320 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
1641 3321 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
1642 3322 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
1643 3323 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
1644 3324 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
1645 3325 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
1646 3326 1.705873 ATCATGTACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
1647 3327 4.156922 CAGATATCATGTACTCCCTCCGTC 59.843 50.000 5.32 0.00 0.00 4.79
1648 3328 4.082845 CAGATATCATGTACTCCCTCCGT 58.917 47.826 5.32 0.00 0.00 4.69
1649 3329 4.082845 ACAGATATCATGTACTCCCTCCG 58.917 47.826 5.32 0.00 0.00 4.63
1650 3330 5.788450 CAACAGATATCATGTACTCCCTCC 58.212 45.833 5.32 0.00 0.00 4.30
1651 3331 5.221521 TGCAACAGATATCATGTACTCCCTC 60.222 44.000 5.32 0.00 0.00 4.30
1652 3332 4.655649 TGCAACAGATATCATGTACTCCCT 59.344 41.667 5.32 0.00 0.00 4.20
1653 3333 4.960938 TGCAACAGATATCATGTACTCCC 58.039 43.478 5.32 0.00 0.00 4.30
1654 3334 6.051717 ACTTGCAACAGATATCATGTACTCC 58.948 40.000 5.32 0.00 0.00 3.85
1655 3335 6.983307 AGACTTGCAACAGATATCATGTACTC 59.017 38.462 5.32 0.00 0.00 2.59
1656 3336 6.882656 AGACTTGCAACAGATATCATGTACT 58.117 36.000 5.32 0.00 0.00 2.73
1657 3337 6.983307 AGAGACTTGCAACAGATATCATGTAC 59.017 38.462 5.32 4.07 0.00 2.90
1658 3338 7.117285 AGAGACTTGCAACAGATATCATGTA 57.883 36.000 5.32 0.00 0.00 2.29
1659 3339 5.987098 AGAGACTTGCAACAGATATCATGT 58.013 37.500 5.32 3.93 0.00 3.21
1727 3419 6.486993 AGTGGTTTAGAAATGGAAGACAGAAC 59.513 38.462 0.00 0.00 0.00 3.01
1824 3517 6.279513 TGTTGTTCAAGTTCAAGATTGGTT 57.720 33.333 0.00 0.00 0.00 3.67
2039 3746 2.028112 GCAATCTGGTCTGTCTGTACCA 60.028 50.000 0.00 0.00 43.47 3.25
3053 5232 2.102578 ACCATGCCAAAAGATAGCACC 58.897 47.619 0.00 0.00 39.77 5.01
3315 5914 4.380843 TGAACATACACCCAATGAGGTT 57.619 40.909 0.00 0.00 38.39 3.50
3722 6329 8.743714 CAGCTCTGGTAAAAGATTTTTATTCCT 58.256 33.333 0.00 0.00 0.00 3.36
3766 6373 6.037098 CCTAGATCCAGAAAACAGAAGTACG 58.963 44.000 0.00 0.00 0.00 3.67
3949 6566 1.445942 CACCAATATCGGCCCGAGT 59.554 57.895 13.12 0.00 39.91 4.18
3970 6587 4.329545 GTTCTGCCAGGGTCCGCA 62.330 66.667 0.00 0.00 0.00 5.69
4026 6647 3.292159 GACCCACGCGCCCTTTTT 61.292 61.111 5.73 0.00 0.00 1.94
4065 6687 0.616891 AAGAAACGGCGGGAATAGGT 59.383 50.000 13.24 0.00 0.00 3.08
4069 6691 1.378119 GGGAAGAAACGGCGGGAAT 60.378 57.895 13.24 0.00 0.00 3.01
4099 6721 1.925959 AGGAGAAAATGGGAGGGAAGG 59.074 52.381 0.00 0.00 0.00 3.46
4166 6788 1.076533 CGCGTACTTCTTCGGTGCAT 61.077 55.000 0.00 0.00 0.00 3.96
4167 6789 1.731613 CGCGTACTTCTTCGGTGCA 60.732 57.895 0.00 0.00 0.00 4.57
4215 6838 0.389817 TGCTTCGGATGAACGACAGG 60.390 55.000 0.00 0.00 43.37 4.00
4222 6845 1.406069 GCTTCCTCTGCTTCGGATGAA 60.406 52.381 0.00 0.00 0.00 2.57
4223 6846 0.176680 GCTTCCTCTGCTTCGGATGA 59.823 55.000 0.00 0.00 0.00 2.92
4226 6849 0.900182 TCAGCTTCCTCTGCTTCGGA 60.900 55.000 0.00 0.00 38.92 4.55
4349 6972 1.014564 CGTTGTCTCGGGCCTTCTTC 61.015 60.000 0.84 0.00 0.00 2.87
4439 7062 4.404691 GGATTCATCATCCCCGCC 57.595 61.111 0.00 0.00 45.71 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.