Multiple sequence alignment - TraesCS6B01G312400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6B01G312400
chr6B
100.000
3236
0
0
1
3236
559511862
559515097
0.000000e+00
5976.0
1
TraesCS6B01G312400
chr6B
87.448
478
56
3
1
475
559062961
559063437
6.100000e-152
547.0
2
TraesCS6B01G312400
chr6D
92.540
1917
114
17
500
2407
372433210
372431314
0.000000e+00
2721.0
3
TraesCS6B01G312400
chr6A
93.471
1164
63
7
1137
2292
514357760
514356602
0.000000e+00
1716.0
4
TraesCS6B01G312400
chr6A
85.997
657
40
16
500
1142
514381007
514380389
0.000000e+00
656.0
5
TraesCS6B01G312400
chr6A
87.277
393
47
3
1
392
237361473
237361083
2.290000e-121
446.0
6
TraesCS6B01G312400
chr5A
95.884
826
33
1
2411
3236
146498922
146498098
0.000000e+00
1336.0
7
TraesCS6B01G312400
chr1A
95.521
826
33
2
2411
3236
111791639
111792460
0.000000e+00
1317.0
8
TraesCS6B01G312400
chr5D
94.559
827
42
3
2411
3236
32229829
32229005
0.000000e+00
1275.0
9
TraesCS6B01G312400
chr3B
94.438
827
40
5
2411
3236
68445837
68446658
0.000000e+00
1267.0
10
TraesCS6B01G312400
chr3B
84.043
94
12
3
380
472
663965803
663965894
1.600000e-13
87.9
11
TraesCS6B01G312400
chr4B
93.470
827
48
5
2411
3236
165036034
165036855
0.000000e+00
1223.0
12
TraesCS6B01G312400
chr4B
93.004
829
57
1
2402
3229
606840583
606839755
0.000000e+00
1208.0
13
TraesCS6B01G312400
chr3A
92.776
789
56
1
2448
3236
41403908
41404695
0.000000e+00
1140.0
14
TraesCS6B01G312400
chr2B
92.821
780
54
2
2411
3189
75912837
75913615
0.000000e+00
1129.0
15
TraesCS6B01G312400
chr4D
88.634
827
89
5
2411
3236
479992588
479993410
0.000000e+00
1002.0
16
TraesCS6B01G312400
chr1D
98.165
109
2
0
1
109
257005456
257005348
1.180000e-44
191.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6B01G312400
chr6B
559511862
559515097
3235
False
5976
5976
100.000
1
3236
1
chr6B.!!$F2
3235
1
TraesCS6B01G312400
chr6D
372431314
372433210
1896
True
2721
2721
92.540
500
2407
1
chr6D.!!$R1
1907
2
TraesCS6B01G312400
chr6A
514356602
514357760
1158
True
1716
1716
93.471
1137
2292
1
chr6A.!!$R2
1155
3
TraesCS6B01G312400
chr6A
514380389
514381007
618
True
656
656
85.997
500
1142
1
chr6A.!!$R3
642
4
TraesCS6B01G312400
chr5A
146498098
146498922
824
True
1336
1336
95.884
2411
3236
1
chr5A.!!$R1
825
5
TraesCS6B01G312400
chr1A
111791639
111792460
821
False
1317
1317
95.521
2411
3236
1
chr1A.!!$F1
825
6
TraesCS6B01G312400
chr5D
32229005
32229829
824
True
1275
1275
94.559
2411
3236
1
chr5D.!!$R1
825
7
TraesCS6B01G312400
chr3B
68445837
68446658
821
False
1267
1267
94.438
2411
3236
1
chr3B.!!$F1
825
8
TraesCS6B01G312400
chr4B
165036034
165036855
821
False
1223
1223
93.470
2411
3236
1
chr4B.!!$F1
825
9
TraesCS6B01G312400
chr4B
606839755
606840583
828
True
1208
1208
93.004
2402
3229
1
chr4B.!!$R1
827
10
TraesCS6B01G312400
chr3A
41403908
41404695
787
False
1140
1140
92.776
2448
3236
1
chr3A.!!$F1
788
11
TraesCS6B01G312400
chr2B
75912837
75913615
778
False
1129
1129
92.821
2411
3189
1
chr2B.!!$F1
778
12
TraesCS6B01G312400
chr4D
479992588
479993410
822
False
1002
1002
88.634
2411
3236
1
chr4D.!!$F1
825
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
510
511
0.096454
GCGGCGGATGTTTGTCTTAC
59.904
55.0
9.78
0.00
0.0
2.34
F
1412
1431
0.396435
ATGTTCTTCCTGGTGCACGA
59.604
50.0
11.45
5.97
0.0
4.35
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2154
2176
0.460109
CCGACAATGCCGATGTCTCA
60.460
55.0
10.63
0.0
43.93
3.27
R
2525
2550
0.545646
GCATCCCCTTCTCTCTGCTT
59.454
55.0
0.00
0.0
0.00
3.91
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
20
21
2.116125
GGGGGTTGCTGCAGTCTT
59.884
61.111
16.64
0.00
0.00
3.01
21
22
2.270986
GGGGGTTGCTGCAGTCTTG
61.271
63.158
16.64
0.00
0.00
3.02
22
23
1.228245
GGGGTTGCTGCAGTCTTGA
60.228
57.895
16.64
0.00
0.00
3.02
23
24
1.518903
GGGGTTGCTGCAGTCTTGAC
61.519
60.000
16.64
7.01
0.00
3.18
24
25
1.571460
GGTTGCTGCAGTCTTGACG
59.429
57.895
16.64
0.00
0.00
4.35
25
26
1.082496
GTTGCTGCAGTCTTGACGC
60.082
57.895
16.64
0.00
0.00
5.19
26
27
2.253758
TTGCTGCAGTCTTGACGCC
61.254
57.895
16.64
0.00
0.00
5.68
27
28
3.782244
GCTGCAGTCTTGACGCCG
61.782
66.667
16.64
8.77
0.00
6.46
28
29
3.114616
CTGCAGTCTTGACGCCGG
61.115
66.667
5.25
0.00
0.00
6.13
29
30
3.865929
CTGCAGTCTTGACGCCGGT
62.866
63.158
5.25
0.00
0.00
5.28
30
31
3.414700
GCAGTCTTGACGCCGGTG
61.415
66.667
14.93
14.93
0.00
4.94
31
32
2.738521
CAGTCTTGACGCCGGTGG
60.739
66.667
21.14
6.53
0.00
4.61
32
33
4.681978
AGTCTTGACGCCGGTGGC
62.682
66.667
21.14
18.75
46.75
5.01
43
44
4.148825
CGGTGGCCCTCCTCGAAG
62.149
72.222
0.00
0.00
33.77
3.79
44
45
4.475135
GGTGGCCCTCCTCGAAGC
62.475
72.222
0.00
0.00
0.00
3.86
45
46
3.706373
GTGGCCCTCCTCGAAGCA
61.706
66.667
0.00
0.00
0.00
3.91
46
47
3.706373
TGGCCCTCCTCGAAGCAC
61.706
66.667
0.00
0.00
0.00
4.40
47
48
4.475135
GGCCCTCCTCGAAGCACC
62.475
72.222
0.00
0.00
0.00
5.01
48
49
3.394836
GCCCTCCTCGAAGCACCT
61.395
66.667
0.00
0.00
0.00
4.00
49
50
2.581354
CCCTCCTCGAAGCACCTG
59.419
66.667
0.00
0.00
0.00
4.00
50
51
1.984570
CCCTCCTCGAAGCACCTGA
60.985
63.158
0.00
0.00
0.00
3.86
51
52
1.544825
CCCTCCTCGAAGCACCTGAA
61.545
60.000
0.00
0.00
0.00
3.02
52
53
0.108424
CCTCCTCGAAGCACCTGAAG
60.108
60.000
0.00
0.00
0.00
3.02
53
54
0.739112
CTCCTCGAAGCACCTGAAGC
60.739
60.000
0.00
0.00
0.00
3.86
54
55
1.004560
CCTCGAAGCACCTGAAGCA
60.005
57.895
0.00
0.00
0.00
3.91
55
56
0.392193
CCTCGAAGCACCTGAAGCAT
60.392
55.000
0.00
0.00
0.00
3.79
56
57
1.134699
CCTCGAAGCACCTGAAGCATA
60.135
52.381
0.00
0.00
0.00
3.14
57
58
2.200067
CTCGAAGCACCTGAAGCATAG
58.800
52.381
0.00
0.00
0.00
2.23
58
59
0.654683
CGAAGCACCTGAAGCATAGC
59.345
55.000
0.00
0.00
0.00
2.97
59
60
1.020437
GAAGCACCTGAAGCATAGCC
58.980
55.000
0.00
0.00
0.00
3.93
60
61
0.394899
AAGCACCTGAAGCATAGCCC
60.395
55.000
0.00
0.00
0.00
5.19
61
62
2.182842
GCACCTGAAGCATAGCCCG
61.183
63.158
0.00
0.00
0.00
6.13
62
63
1.221840
CACCTGAAGCATAGCCCGT
59.778
57.895
0.00
0.00
0.00
5.28
63
64
1.091771
CACCTGAAGCATAGCCCGTG
61.092
60.000
0.00
0.00
0.00
4.94
64
65
1.524621
CCTGAAGCATAGCCCGTGG
60.525
63.158
0.00
0.00
0.00
4.94
65
66
1.522092
CTGAAGCATAGCCCGTGGA
59.478
57.895
0.00
0.00
0.00
4.02
66
67
0.531532
CTGAAGCATAGCCCGTGGAG
60.532
60.000
0.00
0.00
0.00
3.86
67
68
1.227674
GAAGCATAGCCCGTGGAGG
60.228
63.158
0.00
0.00
40.63
4.30
68
69
1.972660
GAAGCATAGCCCGTGGAGGT
61.973
60.000
0.00
0.00
38.74
3.85
69
70
1.972660
AAGCATAGCCCGTGGAGGTC
61.973
60.000
0.00
0.00
38.74
3.85
70
71
2.822399
CATAGCCCGTGGAGGTCC
59.178
66.667
0.00
0.00
38.74
4.46
71
72
2.838225
ATAGCCCGTGGAGGTCCG
60.838
66.667
0.00
0.00
39.43
4.79
81
82
3.467226
GAGGTCCGGCGGGATGAA
61.467
66.667
27.98
2.30
46.14
2.57
82
83
3.735037
GAGGTCCGGCGGGATGAAC
62.735
68.421
27.98
16.31
46.14
3.18
83
84
4.851179
GGTCCGGCGGGATGAACC
62.851
72.222
27.98
21.71
46.14
3.62
84
85
4.090588
GTCCGGCGGGATGAACCA
62.091
66.667
27.98
0.00
46.14
3.67
85
86
4.090588
TCCGGCGGGATGAACCAC
62.091
66.667
27.98
0.00
37.43
4.16
86
87
4.402528
CCGGCGGGATGAACCACA
62.403
66.667
20.56
0.00
41.20
4.17
87
88
2.359354
CGGCGGGATGAACCACAA
60.359
61.111
0.00
0.00
41.20
3.33
88
89
2.686816
CGGCGGGATGAACCACAAC
61.687
63.158
0.00
0.00
41.20
3.32
89
90
1.303317
GGCGGGATGAACCACAACT
60.303
57.895
0.00
0.00
41.20
3.16
90
91
1.305930
GGCGGGATGAACCACAACTC
61.306
60.000
0.00
0.00
41.20
3.01
91
92
1.305930
GCGGGATGAACCACAACTCC
61.306
60.000
0.00
0.00
41.20
3.85
92
93
1.019278
CGGGATGAACCACAACTCCG
61.019
60.000
0.00
0.00
41.20
4.63
93
94
0.323629
GGGATGAACCACAACTCCGA
59.676
55.000
0.00
0.00
41.20
4.55
94
95
1.676014
GGGATGAACCACAACTCCGAG
60.676
57.143
0.00
0.00
41.20
4.63
95
96
1.676014
GGATGAACCACAACTCCGAGG
60.676
57.143
0.00
0.00
38.79
4.63
96
97
1.275291
GATGAACCACAACTCCGAGGA
59.725
52.381
0.00
0.00
0.00
3.71
97
98
0.391597
TGAACCACAACTCCGAGGAC
59.608
55.000
0.00
0.00
0.00
3.85
98
99
0.391597
GAACCACAACTCCGAGGACA
59.608
55.000
0.00
0.00
0.00
4.02
99
100
0.393077
AACCACAACTCCGAGGACAG
59.607
55.000
0.00
0.00
0.00
3.51
100
101
1.293498
CCACAACTCCGAGGACAGG
59.707
63.158
0.00
0.00
0.00
4.00
101
102
1.293498
CACAACTCCGAGGACAGGG
59.707
63.158
0.00
0.00
0.00
4.45
102
103
1.913762
ACAACTCCGAGGACAGGGG
60.914
63.158
0.00
0.00
34.75
4.79
103
104
3.003763
AACTCCGAGGACAGGGGC
61.004
66.667
0.00
0.00
30.64
5.80
119
120
4.819761
GCGACCCTGATCTGCGCA
62.820
66.667
10.98
10.98
46.19
6.09
120
121
2.584418
CGACCCTGATCTGCGCAG
60.584
66.667
31.53
31.53
0.00
5.18
121
122
2.895680
GACCCTGATCTGCGCAGA
59.104
61.111
39.63
39.63
42.37
4.26
122
123
1.227205
GACCCTGATCTGCGCAGAG
60.227
63.158
39.64
28.95
41.33
3.35
134
135
3.715097
GCAGAGCACCAGCCTCCT
61.715
66.667
0.00
0.00
43.56
3.69
135
136
2.268280
CAGAGCACCAGCCTCCTG
59.732
66.667
0.00
0.00
43.56
3.86
136
137
2.203907
AGAGCACCAGCCTCCTGT
60.204
61.111
0.00
0.00
43.56
4.00
137
138
1.845205
AGAGCACCAGCCTCCTGTT
60.845
57.895
0.00
0.00
43.56
3.16
138
139
1.673665
GAGCACCAGCCTCCTGTTG
60.674
63.158
0.00
0.00
43.56
3.33
139
140
2.674380
GCACCAGCCTCCTGTTGG
60.674
66.667
0.00
0.00
37.38
3.77
169
170
3.532792
CGACGACGACGCCACATG
61.533
66.667
7.30
0.00
43.96
3.21
170
171
3.179265
GACGACGACGCCACATGG
61.179
66.667
7.30
0.00
43.96
3.66
181
182
3.813143
CACATGGCCATGCGCGAA
61.813
61.111
39.74
0.00
42.39
4.70
182
183
3.511595
ACATGGCCATGCGCGAAG
61.512
61.111
39.74
19.24
42.39
3.79
183
184
4.260355
CATGGCCATGCGCGAAGG
62.260
66.667
31.95
9.19
38.94
3.46
184
185
4.488136
ATGGCCATGCGCGAAGGA
62.488
61.111
20.04
0.00
38.94
3.36
188
189
3.197790
CCATGCGCGAAGGACCAG
61.198
66.667
12.10
0.00
0.00
4.00
189
190
3.197790
CATGCGCGAAGGACCAGG
61.198
66.667
12.10
0.00
0.00
4.45
190
191
4.473520
ATGCGCGAAGGACCAGGG
62.474
66.667
12.10
0.00
0.00
4.45
213
214
4.962836
CCATCCCATGGCCGGCTC
62.963
72.222
28.56
17.27
44.70
4.70
214
215
4.962836
CATCCCATGGCCGGCTCC
62.963
72.222
28.56
11.61
0.00
4.70
277
278
4.754667
GACGAACCCGCCAGACCC
62.755
72.222
0.00
0.00
39.95
4.46
279
280
4.096003
CGAACCCGCCAGACCCAT
62.096
66.667
0.00
0.00
0.00
4.00
280
281
2.124695
GAACCCGCCAGACCCATC
60.125
66.667
0.00
0.00
0.00
3.51
281
282
4.096003
AACCCGCCAGACCCATCG
62.096
66.667
0.00
0.00
0.00
3.84
283
284
3.550431
CCCGCCAGACCCATCGAT
61.550
66.667
0.00
0.00
0.00
3.59
284
285
2.280389
CCGCCAGACCCATCGATG
60.280
66.667
18.76
18.76
0.00
3.84
285
286
2.969238
CGCCAGACCCATCGATGC
60.969
66.667
20.25
6.64
0.00
3.91
286
287
2.592861
GCCAGACCCATCGATGCC
60.593
66.667
20.25
10.71
0.00
4.40
287
288
2.280389
CCAGACCCATCGATGCCG
60.280
66.667
20.25
13.75
37.07
5.69
297
298
3.678921
TCGATGCCGAAATACCCAG
57.321
52.632
0.00
0.00
42.51
4.45
298
299
1.116308
TCGATGCCGAAATACCCAGA
58.884
50.000
0.00
0.00
42.51
3.86
299
300
1.202486
TCGATGCCGAAATACCCAGAC
60.202
52.381
0.00
0.00
42.51
3.51
300
301
1.594331
GATGCCGAAATACCCAGACC
58.406
55.000
0.00
0.00
0.00
3.85
301
302
0.179056
ATGCCGAAATACCCAGACCG
60.179
55.000
0.00
0.00
0.00
4.79
302
303
1.523032
GCCGAAATACCCAGACCGG
60.523
63.158
0.00
0.00
39.88
5.28
303
304
1.963464
GCCGAAATACCCAGACCGGA
61.963
60.000
9.46
0.00
39.31
5.14
304
305
0.179092
CCGAAATACCCAGACCGGAC
60.179
60.000
9.46
0.10
39.31
4.79
305
306
0.533491
CGAAATACCCAGACCGGACA
59.467
55.000
9.46
0.00
36.56
4.02
306
307
1.738030
CGAAATACCCAGACCGGACAC
60.738
57.143
9.46
0.00
36.56
3.67
307
308
0.616891
AAATACCCAGACCGGACACC
59.383
55.000
9.46
0.00
36.56
4.16
339
340
2.686602
GGGGATACGCCGAAGAAAC
58.313
57.895
0.00
0.00
45.38
2.78
340
341
0.812811
GGGGATACGCCGAAGAAACC
60.813
60.000
0.00
0.00
45.38
3.27
341
342
0.177373
GGGATACGCCGAAGAAACCT
59.823
55.000
0.00
0.00
37.63
3.50
342
343
1.410153
GGGATACGCCGAAGAAACCTA
59.590
52.381
0.00
0.00
37.63
3.08
343
344
2.159057
GGGATACGCCGAAGAAACCTAA
60.159
50.000
0.00
0.00
37.63
2.69
344
345
3.121544
GGATACGCCGAAGAAACCTAAG
58.878
50.000
0.00
0.00
0.00
2.18
345
346
2.660189
TACGCCGAAGAAACCTAAGG
57.340
50.000
0.00
0.00
0.00
2.69
346
347
0.971386
ACGCCGAAGAAACCTAAGGA
59.029
50.000
0.00
0.00
0.00
3.36
347
348
1.067071
ACGCCGAAGAAACCTAAGGAG
60.067
52.381
0.00
0.00
0.00
3.69
356
357
4.899239
CCTAAGGAGGGCTGCGCG
62.899
72.222
11.20
0.00
39.48
6.86
357
358
3.838271
CTAAGGAGGGCTGCGCGA
61.838
66.667
12.10
0.00
0.00
5.87
358
359
3.371097
CTAAGGAGGGCTGCGCGAA
62.371
63.158
12.10
0.00
0.00
4.70
359
360
3.659089
TAAGGAGGGCTGCGCGAAC
62.659
63.158
12.10
5.73
0.00
3.95
393
394
4.083862
GCGGGGAGAGGTGGACAC
62.084
72.222
0.00
0.00
0.00
3.67
423
424
4.222847
GGCTACCGGCGGGAGAAG
62.223
72.222
41.23
25.61
42.94
2.85
424
425
4.222847
GCTACCGGCGGGAGAAGG
62.223
72.222
41.23
17.18
36.97
3.46
425
426
2.758737
CTACCGGCGGGAGAAGGT
60.759
66.667
34.75
10.67
42.35
3.50
426
427
3.072468
TACCGGCGGGAGAAGGTG
61.072
66.667
31.78
1.05
40.47
4.00
485
486
2.413765
CGGAGCGGCTAGGAGAAC
59.586
66.667
0.60
0.00
0.00
3.01
486
487
2.415608
CGGAGCGGCTAGGAGAACA
61.416
63.158
0.60
0.00
0.00
3.18
487
488
1.142097
GGAGCGGCTAGGAGAACAC
59.858
63.158
0.60
0.00
0.00
3.32
488
489
1.142097
GAGCGGCTAGGAGAACACC
59.858
63.158
0.60
0.00
0.00
4.16
489
490
1.605058
GAGCGGCTAGGAGAACACCA
61.605
60.000
0.60
0.00
0.00
4.17
490
491
1.192146
AGCGGCTAGGAGAACACCAA
61.192
55.000
0.00
0.00
0.00
3.67
491
492
0.741221
GCGGCTAGGAGAACACCAAG
60.741
60.000
0.00
0.00
0.00
3.61
492
493
0.741221
CGGCTAGGAGAACACCAAGC
60.741
60.000
0.00
0.00
0.00
4.01
493
494
0.741221
GGCTAGGAGAACACCAAGCG
60.741
60.000
0.00
0.00
0.00
4.68
494
495
0.741221
GCTAGGAGAACACCAAGCGG
60.741
60.000
0.00
0.00
38.77
5.52
495
496
0.741221
CTAGGAGAACACCAAGCGGC
60.741
60.000
0.00
0.00
34.57
6.53
496
497
2.501223
TAGGAGAACACCAAGCGGCG
62.501
60.000
0.51
0.51
34.57
6.46
497
498
3.423154
GAGAACACCAAGCGGCGG
61.423
66.667
9.78
0.00
34.57
6.13
498
499
3.876589
GAGAACACCAAGCGGCGGA
62.877
63.158
9.78
0.00
34.57
5.54
502
503
3.055719
CACCAAGCGGCGGATGTT
61.056
61.111
9.78
0.00
34.57
2.71
510
511
0.096454
GCGGCGGATGTTTGTCTTAC
59.904
55.000
9.78
0.00
0.00
2.34
527
528
5.761234
TGTCTTACATGTTTTCGTAGGCTTT
59.239
36.000
2.30
0.00
0.00
3.51
528
529
6.930164
TGTCTTACATGTTTTCGTAGGCTTTA
59.070
34.615
2.30
0.00
0.00
1.85
618
621
3.939592
GACAGAAATGTAACTAGGCCACC
59.060
47.826
5.01
0.00
0.00
4.61
622
625
1.324740
ATGTAACTAGGCCACCGCGA
61.325
55.000
8.23
0.00
35.02
5.87
667
670
4.394712
GTGGAGCCGGTCACCTGG
62.395
72.222
1.90
0.00
0.00
4.45
668
671
4.631740
TGGAGCCGGTCACCTGGA
62.632
66.667
1.90
0.00
0.00
3.86
669
672
3.083997
GGAGCCGGTCACCTGGAT
61.084
66.667
1.90
2.04
0.00
3.41
686
689
1.674221
GGATCTGCGGGACTGATATGC
60.674
57.143
0.00
0.00
37.10
3.14
714
720
2.089600
TCCTAAGGAAGGGCTAGAGC
57.910
55.000
0.00
0.00
46.55
4.09
783
789
4.266070
GGAGCTACGCGCGGATCA
62.266
66.667
35.22
14.85
45.59
2.92
921
933
2.930950
AGAGGAGAGAGACCAATCGAG
58.069
52.381
0.00
0.00
0.00
4.04
959
971
0.471022
AACGCCCCTCCACCAAAATT
60.471
50.000
0.00
0.00
0.00
1.82
988
1000
1.130561
GCTCTTTCAATTTCCCGTCGG
59.869
52.381
3.60
3.60
0.00
4.79
1018
1030
0.813210
GATGGCAGCGCTTTCTAGCT
60.813
55.000
7.50
0.00
45.51
3.32
1066
1084
3.706373
GGCTCTGGTTCCGCCTCA
61.706
66.667
0.00
0.00
40.62
3.86
1097
1115
4.496336
GAAGGCAGGGATGGCGCT
62.496
66.667
7.64
0.00
39.53
5.92
1221
1240
3.642778
CTCCGACCGCGTCCACATT
62.643
63.158
4.92
0.00
35.23
2.71
1411
1430
0.518636
CATGTTCTTCCTGGTGCACG
59.481
55.000
11.45
0.00
0.00
5.34
1412
1431
0.396435
ATGTTCTTCCTGGTGCACGA
59.604
50.000
11.45
5.97
0.00
4.35
1493
1512
2.762459
TCTCCCGATCAACCCCGG
60.762
66.667
0.00
0.00
44.94
5.73
1671
1690
2.103538
CATGCCGCTGACATTGCC
59.896
61.111
0.00
0.00
0.00
4.52
1680
1699
1.171308
CTGACATTGCCACCTTCCAG
58.829
55.000
0.00
0.00
0.00
3.86
1710
1729
2.338984
GTCCTCACCGCAGAACGT
59.661
61.111
0.00
0.00
41.42
3.99
1746
1765
2.970639
CATGTCCTGGACGTCGGT
59.029
61.111
18.52
1.02
34.95
4.69
1764
1783
1.305297
TGACGAGGGCATCAGGTCT
60.305
57.895
0.00
0.00
0.00
3.85
1771
1790
0.678048
GGGCATCAGGTCTGTCCAAC
60.678
60.000
0.00
0.00
39.02
3.77
1777
1796
1.079819
AGGTCTGTCCAACGCATCG
60.080
57.895
0.00
0.00
39.02
3.84
1778
1797
2.100631
GGTCTGTCCAACGCATCGG
61.101
63.158
0.00
0.00
35.97
4.18
1797
1816
3.134127
GGCACGCCAAGGGATGAC
61.134
66.667
2.36
0.00
35.81
3.06
1800
1819
3.319198
ACGCCAAGGGATGACGGT
61.319
61.111
0.00
0.00
39.45
4.83
1960
1982
1.913262
TGGAGCAGGGTCGACACAT
60.913
57.895
22.01
5.09
0.00
3.21
2006
2028
4.810661
AAGCTGCTCTCGCTCGGC
62.811
66.667
1.00
0.00
36.56
5.54
2122
2144
0.601841
CCACTCCGGTGTGTACAACC
60.602
60.000
29.29
13.94
41.53
3.77
2205
2227
2.355115
GGCCCGTGGTCTCCAAAT
59.645
61.111
0.00
0.00
34.18
2.32
2234
2256
0.320946
CCCGCCCGAAGTTTGAGTTA
60.321
55.000
0.00
0.00
0.00
2.24
2297
2321
9.821662
GTTAAACATACACTAGTTCAAATCCAC
57.178
33.333
0.00
0.00
0.00
4.02
2322
2346
2.040178
GTATTGGGACGATGACCTCCT
58.960
52.381
0.00
0.00
0.00
3.69
2323
2347
1.123928
ATTGGGACGATGACCTCCTC
58.876
55.000
0.00
0.00
0.00
3.71
2325
2349
1.075896
GGGACGATGACCTCCTCCT
60.076
63.158
0.00
0.00
31.66
3.69
2333
2357
1.306568
GACCTCCTCCTCCCAGCTT
60.307
63.158
0.00
0.00
0.00
3.74
2342
2366
3.255888
CCTCCTCCCAGCTTTGTTTTAAC
59.744
47.826
0.00
0.00
0.00
2.01
2363
2387
6.438259
AACAGAAAGAGCAGATCATTGATG
57.562
37.500
3.32
0.00
0.00
3.07
2399
2424
5.047802
GTCAAATGCATTCCCTTCAAAGAGA
60.048
40.000
13.38
0.00
0.00
3.10
2458
2483
5.409826
GCGTATCTTTCCATTGATAGAAGGG
59.590
44.000
0.00
0.00
33.19
3.95
2525
2550
2.407268
GCATGAACATGATGCCCGA
58.593
52.632
17.40
0.00
40.37
5.14
2555
2580
4.256180
GGGATGCTCGGCCCGAAT
62.256
66.667
7.50
0.00
34.74
3.34
2881
2906
1.093159
CTGAAGCTGAGCAATCCCAC
58.907
55.000
7.39
0.00
0.00
4.61
2915
2940
2.293122
CGGAATTGAAGTTGTGGAAGCA
59.707
45.455
0.00
0.00
0.00
3.91
3068
3096
2.870435
GCTGGAGACGAAGCAAAACCTA
60.870
50.000
0.00
0.00
39.31
3.08
3125
3154
2.053618
CGAGCTAGGATTGGAGGGG
58.946
63.158
0.00
0.00
0.00
4.79
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
3
4
2.116125
AAGACTGCAGCAACCCCC
59.884
61.111
15.27
0.00
0.00
5.40
4
5
1.228245
TCAAGACTGCAGCAACCCC
60.228
57.895
15.27
0.00
0.00
4.95
5
6
1.845809
CGTCAAGACTGCAGCAACCC
61.846
60.000
15.27
0.00
0.00
4.11
6
7
1.571460
CGTCAAGACTGCAGCAACC
59.429
57.895
15.27
0.38
0.00
3.77
7
8
1.082496
GCGTCAAGACTGCAGCAAC
60.082
57.895
15.27
5.81
33.40
4.17
8
9
2.253758
GGCGTCAAGACTGCAGCAA
61.254
57.895
15.27
0.00
34.32
3.91
9
10
2.666190
GGCGTCAAGACTGCAGCA
60.666
61.111
15.27
0.00
34.32
4.41
10
11
3.782244
CGGCGTCAAGACTGCAGC
61.782
66.667
15.27
6.85
34.32
5.25
11
12
3.114616
CCGGCGTCAAGACTGCAG
61.115
66.667
13.48
13.48
34.32
4.41
12
13
3.923864
ACCGGCGTCAAGACTGCA
61.924
61.111
6.01
0.00
34.32
4.41
13
14
3.414700
CACCGGCGTCAAGACTGC
61.415
66.667
6.01
7.99
0.00
4.40
14
15
2.738521
CCACCGGCGTCAAGACTG
60.739
66.667
6.01
0.00
0.00
3.51
15
16
4.681978
GCCACCGGCGTCAAGACT
62.682
66.667
6.01
0.00
39.62
3.24
26
27
4.148825
CTTCGAGGAGGGCCACCG
62.149
72.222
14.68
7.40
43.47
4.94
27
28
4.475135
GCTTCGAGGAGGGCCACC
62.475
72.222
12.67
12.67
36.29
4.61
28
29
3.706373
TGCTTCGAGGAGGGCCAC
61.706
66.667
6.18
0.00
36.29
5.01
29
30
3.706373
GTGCTTCGAGGAGGGCCA
61.706
66.667
6.18
0.00
36.29
5.36
30
31
4.475135
GGTGCTTCGAGGAGGGCC
62.475
72.222
0.00
0.00
0.00
5.80
31
32
3.394836
AGGTGCTTCGAGGAGGGC
61.395
66.667
0.00
0.00
0.00
5.19
32
33
1.544825
TTCAGGTGCTTCGAGGAGGG
61.545
60.000
0.00
0.00
0.00
4.30
33
34
0.108424
CTTCAGGTGCTTCGAGGAGG
60.108
60.000
0.00
0.00
0.00
4.30
34
35
0.739112
GCTTCAGGTGCTTCGAGGAG
60.739
60.000
0.00
0.00
0.00
3.69
35
36
1.293498
GCTTCAGGTGCTTCGAGGA
59.707
57.895
0.00
0.00
0.00
3.71
36
37
0.392193
ATGCTTCAGGTGCTTCGAGG
60.392
55.000
0.00
0.00
0.00
4.63
37
38
2.200067
CTATGCTTCAGGTGCTTCGAG
58.800
52.381
0.00
0.00
0.00
4.04
38
39
1.740380
GCTATGCTTCAGGTGCTTCGA
60.740
52.381
0.00
0.00
0.00
3.71
39
40
0.654683
GCTATGCTTCAGGTGCTTCG
59.345
55.000
0.00
0.00
0.00
3.79
40
41
1.020437
GGCTATGCTTCAGGTGCTTC
58.980
55.000
0.00
0.00
0.00
3.86
41
42
0.394899
GGGCTATGCTTCAGGTGCTT
60.395
55.000
0.00
0.00
0.00
3.91
42
43
1.225704
GGGCTATGCTTCAGGTGCT
59.774
57.895
0.00
0.00
0.00
4.40
43
44
2.182842
CGGGCTATGCTTCAGGTGC
61.183
63.158
0.00
0.00
0.00
5.01
44
45
1.091771
CACGGGCTATGCTTCAGGTG
61.092
60.000
0.00
0.00
0.00
4.00
45
46
1.221840
CACGGGCTATGCTTCAGGT
59.778
57.895
0.00
0.00
0.00
4.00
46
47
1.524621
CCACGGGCTATGCTTCAGG
60.525
63.158
0.00
0.00
0.00
3.86
47
48
0.531532
CTCCACGGGCTATGCTTCAG
60.532
60.000
0.00
0.00
0.00
3.02
48
49
1.522092
CTCCACGGGCTATGCTTCA
59.478
57.895
0.00
0.00
0.00
3.02
49
50
1.227674
CCTCCACGGGCTATGCTTC
60.228
63.158
0.00
0.00
0.00
3.86
50
51
1.972660
GACCTCCACGGGCTATGCTT
61.973
60.000
0.00
0.00
38.04
3.91
51
52
2.365635
ACCTCCACGGGCTATGCT
60.366
61.111
0.00
0.00
36.97
3.79
52
53
2.109181
GACCTCCACGGGCTATGC
59.891
66.667
0.00
0.00
38.04
3.14
53
54
2.822399
GGACCTCCACGGGCTATG
59.178
66.667
0.00
0.00
42.26
2.23
54
55
2.838225
CGGACCTCCACGGGCTAT
60.838
66.667
0.00
0.00
42.26
2.97
64
65
3.467226
TTCATCCCGCCGGACCTC
61.467
66.667
5.05
0.00
42.48
3.85
65
66
3.782443
GTTCATCCCGCCGGACCT
61.782
66.667
5.05
0.00
42.48
3.85
66
67
4.851179
GGTTCATCCCGCCGGACC
62.851
72.222
5.05
0.00
42.48
4.46
67
68
4.090588
TGGTTCATCCCGCCGGAC
62.091
66.667
5.05
0.00
42.48
4.79
68
69
4.090588
GTGGTTCATCCCGCCGGA
62.091
66.667
5.05
0.00
44.33
5.14
69
70
3.910914
TTGTGGTTCATCCCGCCGG
62.911
63.158
0.00
0.00
33.93
6.13
70
71
2.359354
TTGTGGTTCATCCCGCCG
60.359
61.111
0.00
0.00
33.93
6.46
71
72
1.303317
AGTTGTGGTTCATCCCGCC
60.303
57.895
0.00
0.00
33.93
6.13
72
73
1.305930
GGAGTTGTGGTTCATCCCGC
61.306
60.000
0.00
0.00
34.77
6.13
73
74
1.019278
CGGAGTTGTGGTTCATCCCG
61.019
60.000
0.00
0.00
34.77
5.14
74
75
0.323629
TCGGAGTTGTGGTTCATCCC
59.676
55.000
0.00
0.00
34.77
3.85
75
76
1.676014
CCTCGGAGTTGTGGTTCATCC
60.676
57.143
4.02
0.00
0.00
3.51
76
77
1.275291
TCCTCGGAGTTGTGGTTCATC
59.725
52.381
4.02
0.00
0.00
2.92
77
78
1.002087
GTCCTCGGAGTTGTGGTTCAT
59.998
52.381
4.02
0.00
0.00
2.57
78
79
0.391597
GTCCTCGGAGTTGTGGTTCA
59.608
55.000
4.02
0.00
0.00
3.18
79
80
0.391597
TGTCCTCGGAGTTGTGGTTC
59.608
55.000
4.02
0.00
0.00
3.62
80
81
0.393077
CTGTCCTCGGAGTTGTGGTT
59.607
55.000
4.02
0.00
0.00
3.67
81
82
1.472662
CCTGTCCTCGGAGTTGTGGT
61.473
60.000
4.02
0.00
0.00
4.16
82
83
1.293498
CCTGTCCTCGGAGTTGTGG
59.707
63.158
4.02
0.00
0.00
4.17
83
84
1.293498
CCCTGTCCTCGGAGTTGTG
59.707
63.158
4.02
0.00
0.00
3.33
84
85
1.913762
CCCCTGTCCTCGGAGTTGT
60.914
63.158
4.02
0.00
0.00
3.32
85
86
2.982130
CCCCTGTCCTCGGAGTTG
59.018
66.667
4.02
0.00
0.00
3.16
86
87
3.003763
GCCCCTGTCCTCGGAGTT
61.004
66.667
4.02
0.00
0.00
3.01
100
101
4.899239
CGCAGATCAGGGTCGCCC
62.899
72.222
6.80
6.80
45.90
6.13
102
103
4.819761
TGCGCAGATCAGGGTCGC
62.820
66.667
5.66
7.00
45.23
5.19
103
104
2.584418
CTGCGCAGATCAGGGTCG
60.584
66.667
33.66
0.65
0.00
4.79
104
105
1.227205
CTCTGCGCAGATCAGGGTC
60.227
63.158
38.11
0.00
36.76
4.46
105
106
2.898738
CTCTGCGCAGATCAGGGT
59.101
61.111
38.11
0.00
36.76
4.34
106
107
2.588314
GCTCTGCGCAGATCAGGG
60.588
66.667
38.11
26.71
36.76
4.45
107
108
2.186125
TGCTCTGCGCAGATCAGG
59.814
61.111
38.11
27.07
45.47
3.86
117
118
3.715097
AGGAGGCTGGTGCTCTGC
61.715
66.667
0.00
0.00
39.59
4.26
118
119
2.121992
AACAGGAGGCTGGTGCTCTG
62.122
60.000
0.00
0.00
39.59
3.35
119
120
1.845205
AACAGGAGGCTGGTGCTCT
60.845
57.895
0.00
0.00
39.59
4.09
120
121
1.673665
CAACAGGAGGCTGGTGCTC
60.674
63.158
0.00
0.00
35.10
4.26
121
122
2.433446
CAACAGGAGGCTGGTGCT
59.567
61.111
0.00
0.00
35.10
4.40
122
123
2.674380
CCAACAGGAGGCTGGTGC
60.674
66.667
0.00
0.00
40.49
5.01
152
153
3.532792
CATGTGGCGTCGTCGTCG
61.533
66.667
7.53
7.53
45.30
5.12
153
154
3.179265
CCATGTGGCGTCGTCGTC
61.179
66.667
0.00
0.00
42.45
4.20
165
166
3.511595
CTTCGCGCATGGCCATGT
61.512
61.111
39.08
10.66
40.80
3.21
166
167
4.260355
CCTTCGCGCATGGCCATG
62.260
66.667
36.80
36.80
41.60
3.66
167
168
4.488136
TCCTTCGCGCATGGCCAT
62.488
61.111
14.09
14.09
38.94
4.40
171
172
3.197790
CTGGTCCTTCGCGCATGG
61.198
66.667
8.75
6.05
0.00
3.66
172
173
3.197790
CCTGGTCCTTCGCGCATG
61.198
66.667
8.75
0.00
0.00
4.06
173
174
4.473520
CCCTGGTCCTTCGCGCAT
62.474
66.667
8.75
0.00
0.00
4.73
197
198
4.962836
GGAGCCGGCCATGGGATG
62.963
72.222
26.15
0.00
0.00
3.51
260
261
4.754667
GGGTCTGGCGGGTTCGTC
62.755
72.222
0.00
0.00
42.06
4.20
262
263
4.096003
ATGGGTCTGGCGGGTTCG
62.096
66.667
0.00
0.00
39.81
3.95
263
264
2.124695
GATGGGTCTGGCGGGTTC
60.125
66.667
0.00
0.00
0.00
3.62
264
265
4.096003
CGATGGGTCTGGCGGGTT
62.096
66.667
0.00
0.00
0.00
4.11
266
267
3.550431
ATCGATGGGTCTGGCGGG
61.550
66.667
0.00
0.00
0.00
6.13
267
268
2.280389
CATCGATGGGTCTGGCGG
60.280
66.667
17.96
0.00
0.00
6.13
268
269
2.969238
GCATCGATGGGTCTGGCG
60.969
66.667
26.00
0.00
0.00
5.69
269
270
2.592861
GGCATCGATGGGTCTGGC
60.593
66.667
26.00
9.85
0.00
4.85
270
271
2.280389
CGGCATCGATGGGTCTGG
60.280
66.667
26.00
0.00
39.00
3.86
271
272
0.461870
TTTCGGCATCGATGGGTCTG
60.462
55.000
26.00
14.57
45.51
3.51
272
273
0.469917
ATTTCGGCATCGATGGGTCT
59.530
50.000
26.00
0.00
45.51
3.85
273
274
1.798813
GTATTTCGGCATCGATGGGTC
59.201
52.381
26.00
10.03
45.51
4.46
274
275
1.542547
GGTATTTCGGCATCGATGGGT
60.543
52.381
26.00
4.46
45.51
4.51
275
276
1.156736
GGTATTTCGGCATCGATGGG
58.843
55.000
26.00
2.75
45.51
4.00
276
277
1.156736
GGGTATTTCGGCATCGATGG
58.843
55.000
26.00
11.15
45.51
3.51
277
278
1.800586
CTGGGTATTTCGGCATCGATG
59.199
52.381
21.27
21.27
45.51
3.84
278
279
1.691976
TCTGGGTATTTCGGCATCGAT
59.308
47.619
0.00
0.00
45.51
3.59
279
280
1.116308
TCTGGGTATTTCGGCATCGA
58.884
50.000
0.00
0.00
44.44
3.59
280
281
1.217882
GTCTGGGTATTTCGGCATCG
58.782
55.000
0.00
0.00
37.82
3.84
281
282
1.594331
GGTCTGGGTATTTCGGCATC
58.406
55.000
0.00
0.00
0.00
3.91
282
283
0.179056
CGGTCTGGGTATTTCGGCAT
60.179
55.000
0.00
0.00
0.00
4.40
283
284
1.219664
CGGTCTGGGTATTTCGGCA
59.780
57.895
0.00
0.00
0.00
5.69
284
285
1.523032
CCGGTCTGGGTATTTCGGC
60.523
63.158
0.00
0.00
0.00
5.54
285
286
0.179092
GTCCGGTCTGGGTATTTCGG
60.179
60.000
0.00
0.00
38.76
4.30
286
287
0.533491
TGTCCGGTCTGGGTATTTCG
59.467
55.000
0.00
0.00
38.76
3.46
287
288
1.406477
GGTGTCCGGTCTGGGTATTTC
60.406
57.143
0.00
0.00
38.76
2.17
288
289
0.616891
GGTGTCCGGTCTGGGTATTT
59.383
55.000
0.00
0.00
38.76
1.40
289
290
1.610554
CGGTGTCCGGTCTGGGTATT
61.611
60.000
0.00
0.00
44.15
1.89
290
291
2.056223
CGGTGTCCGGTCTGGGTAT
61.056
63.158
0.00
0.00
44.15
2.73
291
292
2.677524
CGGTGTCCGGTCTGGGTA
60.678
66.667
0.00
0.00
44.15
3.69
314
315
4.256180
GGCGTATCCCCTGGGCAG
62.256
72.222
7.39
0.00
34.68
4.85
317
318
3.158648
TTCGGCGTATCCCCTGGG
61.159
66.667
5.50
5.50
0.00
4.45
318
319
1.682451
TTCTTCGGCGTATCCCCTGG
61.682
60.000
6.85
0.00
0.00
4.45
319
320
0.177141
TTTCTTCGGCGTATCCCCTG
59.823
55.000
6.85
0.00
0.00
4.45
320
321
0.177373
GTTTCTTCGGCGTATCCCCT
59.823
55.000
6.85
0.00
0.00
4.79
321
322
0.812811
GGTTTCTTCGGCGTATCCCC
60.813
60.000
6.85
0.00
0.00
4.81
322
323
0.177373
AGGTTTCTTCGGCGTATCCC
59.823
55.000
6.85
0.78
0.00
3.85
323
324
2.877043
TAGGTTTCTTCGGCGTATCC
57.123
50.000
6.85
2.66
0.00
2.59
324
325
3.121544
CCTTAGGTTTCTTCGGCGTATC
58.878
50.000
6.85
0.00
0.00
2.24
325
326
2.762327
TCCTTAGGTTTCTTCGGCGTAT
59.238
45.455
6.85
0.00
0.00
3.06
326
327
2.165030
CTCCTTAGGTTTCTTCGGCGTA
59.835
50.000
6.85
0.00
0.00
4.42
327
328
0.971386
TCCTTAGGTTTCTTCGGCGT
59.029
50.000
6.85
0.00
0.00
5.68
328
329
1.641577
CTCCTTAGGTTTCTTCGGCG
58.358
55.000
0.00
0.00
0.00
6.46
329
330
1.407025
CCCTCCTTAGGTTTCTTCGGC
60.407
57.143
0.00
0.00
41.89
5.54
330
331
1.407025
GCCCTCCTTAGGTTTCTTCGG
60.407
57.143
0.00
0.00
41.89
4.30
331
332
1.555533
AGCCCTCCTTAGGTTTCTTCG
59.444
52.381
0.00
0.00
41.89
3.79
332
333
2.941860
GCAGCCCTCCTTAGGTTTCTTC
60.942
54.545
0.00
0.00
41.89
2.87
333
334
1.004862
GCAGCCCTCCTTAGGTTTCTT
59.995
52.381
0.00
0.00
41.89
2.52
334
335
0.621082
GCAGCCCTCCTTAGGTTTCT
59.379
55.000
0.00
0.00
41.89
2.52
335
336
0.744771
CGCAGCCCTCCTTAGGTTTC
60.745
60.000
0.00
0.00
41.89
2.78
336
337
1.299976
CGCAGCCCTCCTTAGGTTT
59.700
57.895
0.00
0.00
41.89
3.27
337
338
2.990479
CGCAGCCCTCCTTAGGTT
59.010
61.111
0.00
0.00
41.89
3.50
376
377
4.083862
GTGTCCACCTCTCCCCGC
62.084
72.222
0.00
0.00
0.00
6.13
406
407
4.222847
CTTCTCCCGCCGGTAGCC
62.223
72.222
1.90
0.00
38.78
3.93
407
408
4.222847
CCTTCTCCCGCCGGTAGC
62.223
72.222
1.90
0.00
38.52
3.58
408
409
2.758737
ACCTTCTCCCGCCGGTAG
60.759
66.667
1.90
0.00
0.00
3.18
409
410
3.072468
CACCTTCTCCCGCCGGTA
61.072
66.667
1.90
0.00
0.00
4.02
465
466
3.972276
CTCCTAGCCGCTCCGCTC
61.972
72.222
0.00
0.00
40.39
5.03
466
467
4.507916
TCTCCTAGCCGCTCCGCT
62.508
66.667
0.00
0.00
43.09
5.52
467
468
3.528370
TTCTCCTAGCCGCTCCGC
61.528
66.667
0.00
0.00
0.00
5.54
468
469
2.413765
GTTCTCCTAGCCGCTCCG
59.586
66.667
0.00
0.00
0.00
4.63
469
470
1.142097
GTGTTCTCCTAGCCGCTCC
59.858
63.158
0.00
0.00
0.00
4.70
470
471
1.142097
GGTGTTCTCCTAGCCGCTC
59.858
63.158
0.00
0.00
0.00
5.03
471
472
1.192146
TTGGTGTTCTCCTAGCCGCT
61.192
55.000
0.00
0.00
0.00
5.52
472
473
0.741221
CTTGGTGTTCTCCTAGCCGC
60.741
60.000
0.00
0.00
0.00
6.53
473
474
0.741221
GCTTGGTGTTCTCCTAGCCG
60.741
60.000
13.35
0.00
45.58
5.52
474
475
3.160872
GCTTGGTGTTCTCCTAGCC
57.839
57.895
13.35
0.00
45.58
3.93
475
476
0.741221
CCGCTTGGTGTTCTCCTAGC
60.741
60.000
14.00
14.00
46.94
3.42
476
477
0.741221
GCCGCTTGGTGTTCTCCTAG
60.741
60.000
0.00
0.00
34.41
3.02
477
478
1.295423
GCCGCTTGGTGTTCTCCTA
59.705
57.895
0.00
0.00
34.16
2.94
478
479
2.032681
GCCGCTTGGTGTTCTCCT
59.967
61.111
0.00
0.00
34.16
3.69
479
480
3.423154
CGCCGCTTGGTGTTCTCC
61.423
66.667
0.00
0.00
38.51
3.71
480
481
3.423154
CCGCCGCTTGGTGTTCTC
61.423
66.667
0.00
0.00
41.94
2.87
481
482
3.254024
ATCCGCCGCTTGGTGTTCT
62.254
57.895
0.00
0.00
41.94
3.01
482
483
2.746277
ATCCGCCGCTTGGTGTTC
60.746
61.111
0.00
0.00
41.94
3.18
483
484
3.055719
CATCCGCCGCTTGGTGTT
61.056
61.111
0.00
0.00
41.94
3.32
484
485
3.842925
AACATCCGCCGCTTGGTGT
62.843
57.895
0.00
0.00
41.94
4.16
485
486
2.625823
AAACATCCGCCGCTTGGTG
61.626
57.895
0.00
0.00
43.20
4.17
486
487
2.282180
AAACATCCGCCGCTTGGT
60.282
55.556
0.00
0.00
34.16
3.67
487
488
2.179018
CAAACATCCGCCGCTTGG
59.821
61.111
0.00
0.00
0.00
3.61
488
489
1.154225
GACAAACATCCGCCGCTTG
60.154
57.895
0.00
0.00
0.00
4.01
489
490
0.889186
AAGACAAACATCCGCCGCTT
60.889
50.000
0.00
0.00
0.00
4.68
490
491
0.036765
TAAGACAAACATCCGCCGCT
60.037
50.000
0.00
0.00
0.00
5.52
491
492
0.096454
GTAAGACAAACATCCGCCGC
59.904
55.000
0.00
0.00
0.00
6.53
492
493
1.434555
TGTAAGACAAACATCCGCCG
58.565
50.000
0.00
0.00
0.00
6.46
493
494
2.747446
ACATGTAAGACAAACATCCGCC
59.253
45.455
0.00
0.00
35.39
6.13
494
495
4.419522
AACATGTAAGACAAACATCCGC
57.580
40.909
0.00
0.00
35.39
5.54
495
496
5.563751
CGAAAACATGTAAGACAAACATCCG
59.436
40.000
0.00
0.00
35.39
4.18
496
497
6.435428
ACGAAAACATGTAAGACAAACATCC
58.565
36.000
0.00
0.00
35.39
3.51
497
498
7.744715
CCTACGAAAACATGTAAGACAAACATC
59.255
37.037
0.00
0.00
35.39
3.06
498
499
7.581476
CCTACGAAAACATGTAAGACAAACAT
58.419
34.615
0.00
0.00
38.08
2.71
502
503
5.302360
AGCCTACGAAAACATGTAAGACAA
58.698
37.500
0.00
0.00
0.00
3.18
634
637
2.113433
CACGACGTCTCCTCGGGAT
61.113
63.158
14.70
0.00
36.62
3.85
667
670
1.674221
GGCATATCAGTCCCGCAGATC
60.674
57.143
0.00
0.00
0.00
2.75
668
671
0.322975
GGCATATCAGTCCCGCAGAT
59.677
55.000
0.00
0.00
0.00
2.90
669
672
1.748403
GGCATATCAGTCCCGCAGA
59.252
57.895
0.00
0.00
0.00
4.26
714
720
3.541713
GCTCCACCGCCCTCTAGG
61.542
72.222
0.00
0.00
39.47
3.02
715
721
3.905678
CGCTCCACCGCCCTCTAG
61.906
72.222
0.00
0.00
0.00
2.43
750
756
2.892425
CCGACGCCATCTTGCTCC
60.892
66.667
0.00
0.00
0.00
4.70
806
812
4.493872
CGTAGCGTAACTGAGGAAGACTAC
60.494
50.000
0.00
0.00
0.00
2.73
883
895
4.884744
TCCTCTTCCTCGCATAGATATAGC
59.115
45.833
0.00
0.00
0.00
2.97
959
971
2.724977
ATTGAAAGAGCGAGACGTGA
57.275
45.000
0.00
0.00
0.00
4.35
1036
1048
4.021925
GAGCCACCGAAGCAGGGT
62.022
66.667
0.00
0.00
38.65
4.34
1066
1084
0.538287
GCCTTCTTGCTTGGTCCACT
60.538
55.000
0.00
0.00
0.00
4.00
1131
1149
0.313043
GCCATGGCGATTCCTTGATG
59.687
55.000
23.48
0.00
41.25
3.07
1133
1151
1.453745
GGCCATGGCGATTCCTTGA
60.454
57.895
29.90
0.00
41.25
3.02
1360
1379
2.873288
GCGGTAGGAGACGTCGTT
59.127
61.111
10.46
2.28
0.00
3.85
1411
1430
1.372087
CCTTCTTGATGGCCGTGCTC
61.372
60.000
0.00
0.00
0.00
4.26
1412
1431
1.377725
CCTTCTTGATGGCCGTGCT
60.378
57.895
0.00
0.00
0.00
4.40
1507
1526
2.167693
TGCGGATGTCTCGTAAATTCCT
59.832
45.455
0.00
0.00
0.00
3.36
1680
1699
1.204231
GTGAGGACGTAGAGTTTCCCC
59.796
57.143
0.00
0.00
0.00
4.81
1746
1765
1.305297
AGACCTGATGCCCTCGTCA
60.305
57.895
0.00
0.00
36.80
4.35
1797
1816
3.695060
AGTAGAACTGATACACCTCACCG
59.305
47.826
0.00
0.00
0.00
4.94
1800
1819
7.052873
GGTAGTAGTAGAACTGATACACCTCA
58.947
42.308
0.00
0.00
0.00
3.86
1842
1861
4.383861
CTCACCAGCAGCAGCCGA
62.384
66.667
0.00
0.00
43.56
5.54
1887
1906
4.617486
ACGTCGAAGCGCGTCACA
62.617
61.111
22.86
6.02
41.80
3.58
1888
1907
3.813688
GACGTCGAAGCGCGTCAC
61.814
66.667
22.86
17.23
46.45
3.67
1960
1982
0.627451
AAGAGAGCATGCCCCATCAA
59.373
50.000
15.66
0.00
0.00
2.57
2122
2144
1.155042
GCCACTGTCTGCTCTTTCAG
58.845
55.000
0.00
0.00
35.46
3.02
2153
2175
1.575244
CGACAATGCCGATGTCTCAT
58.425
50.000
10.63
0.00
43.93
2.90
2154
2176
0.460109
CCGACAATGCCGATGTCTCA
60.460
55.000
10.63
0.00
43.93
3.27
2234
2256
1.668047
GCAACTACCGACACGTAGCTT
60.668
52.381
0.00
0.00
39.53
3.74
2297
2321
2.943033
GGTCATCGTCCCAATACAAAGG
59.057
50.000
0.00
0.00
0.00
3.11
2322
2346
3.888930
CTGTTAAAACAAAGCTGGGAGGA
59.111
43.478
0.00
0.00
38.66
3.71
2323
2347
3.888930
TCTGTTAAAACAAAGCTGGGAGG
59.111
43.478
0.00
0.00
38.66
4.30
2325
2349
5.654650
TCTTTCTGTTAAAACAAAGCTGGGA
59.345
36.000
0.00
0.00
38.66
4.37
2333
2357
7.566760
TGATCTGCTCTTTCTGTTAAAACAA
57.433
32.000
0.00
0.00
38.66
2.83
2342
2366
6.679327
TTCATCAATGATCTGCTCTTTCTG
57.321
37.500
0.00
0.00
36.56
3.02
2363
2387
7.276438
GGGAATGCATTTGACTCACTTTATTTC
59.724
37.037
14.33
0.00
0.00
2.17
2458
2483
3.522343
ACCCCCTTTGTACTCATTCTACC
59.478
47.826
0.00
0.00
0.00
3.18
2525
2550
0.545646
GCATCCCCTTCTCTCTGCTT
59.454
55.000
0.00
0.00
0.00
3.91
2555
2580
4.649674
GGTCTAGTTGTGATGTATCCTCCA
59.350
45.833
0.00
0.00
0.00
3.86
2657
2682
0.806102
GGCGTTATCTTGCGAGCTCA
60.806
55.000
15.40
0.00
0.00
4.26
2881
2906
2.311688
AATTCCGGACTAGGCGGCTG
62.312
60.000
23.55
13.95
0.00
4.85
2915
2940
3.564053
TGGTAGTTCCGACCAACTTTT
57.436
42.857
0.00
0.00
44.08
2.27
3032
3060
1.056700
CCAGCCCTACCCTGTATGCT
61.057
60.000
0.00
0.00
0.00
3.79
3068
3096
3.859414
GCCCCAGATCTGCTCGCT
61.859
66.667
17.76
0.00
0.00
4.93
3117
3146
3.797353
GGATCTGCGCCCCTCCAA
61.797
66.667
4.18
0.00
0.00
3.53
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.