Multiple sequence alignment - TraesCS6B01G312000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G312000 chr6B 100.000 6020 0 0 1 6020 559043692 559037673 0.000000e+00 11117
1 TraesCS6B01G312000 chr6B 87.440 629 75 4 179 804 559473265 559472638 0.000000e+00 721
2 TraesCS6B01G312000 chr6B 98.883 179 2 0 1 179 363606530 363606352 2.710000e-83 320
3 TraesCS6B01G312000 chr6D 95.822 1867 66 5 3250 5114 372879855 372881711 0.000000e+00 3005
4 TraesCS6B01G312000 chr6D 88.687 2201 120 43 801 2943 372876731 372878860 0.000000e+00 2566
5 TraesCS6B01G312000 chr6D 91.946 298 17 2 2956 3253 372879530 372879820 1.560000e-110 411
6 TraesCS6B01G312000 chr6A 94.031 1843 65 23 3309 5114 514892525 514894359 0.000000e+00 2752
7 TraesCS6B01G312000 chr6A 87.668 1711 116 38 1177 2814 514890545 514892233 0.000000e+00 1903
8 TraesCS6B01G312000 chr6A 86.076 632 80 7 180 806 237390867 237391495 0.000000e+00 673
9 TraesCS6B01G312000 chr6A 89.051 411 14 15 801 1187 514890111 514890514 1.170000e-131 481
10 TraesCS6B01G312000 chr6A 93.596 203 10 3 1 202 310908253 310908053 3.530000e-77 300
11 TraesCS6B01G312000 chr6A 88.095 210 12 8 3049 3253 514892252 514892453 2.800000e-58 237
12 TraesCS6B01G312000 chr1D 90.739 907 77 2 5120 6020 253151099 253150194 0.000000e+00 1203
13 TraesCS6B01G312000 chr1D 88.906 631 67 3 179 806 257019601 257020231 0.000000e+00 774
14 TraesCS6B01G312000 chr3D 90.728 906 77 2 5121 6020 502062222 502061318 0.000000e+00 1201
15 TraesCS6B01G312000 chr1B 96.672 631 18 3 179 808 155712155 155711527 0.000000e+00 1046
16 TraesCS6B01G312000 chr1B 94.427 628 34 1 179 805 354515970 354516597 0.000000e+00 965
17 TraesCS6B01G312000 chr1B 89.776 626 61 2 180 804 390276809 390277432 0.000000e+00 798
18 TraesCS6B01G312000 chr1B 94.175 206 6 6 1 203 274910025 274909823 5.860000e-80 309
19 TraesCS6B01G312000 chr2B 95.694 627 23 2 179 805 152129221 152128599 0.000000e+00 1005
20 TraesCS6B01G312000 chr2B 81.595 326 51 6 5119 5442 665863148 665862830 1.660000e-65 261
21 TraesCS6B01G312000 chr5D 86.000 900 119 4 5121 6020 370784759 370783867 0.000000e+00 957
22 TraesCS6B01G312000 chr7A 79.697 1320 232 29 3712 5016 186542513 186541215 0.000000e+00 920
23 TraesCS6B01G312000 chr2D 87.937 630 72 4 179 805 277213615 277212987 0.000000e+00 739
24 TraesCS6B01G312000 chr2D 80.308 909 163 11 5125 6020 499149706 499148801 0.000000e+00 673
25 TraesCS6B01G312000 chr5A 87.660 624 74 3 179 799 608260077 608260700 0.000000e+00 723
26 TraesCS6B01G312000 chr4B 80.786 916 149 19 5120 6020 99081202 99080299 0.000000e+00 691
27 TraesCS6B01G312000 chr4B 98.895 181 2 0 1 181 466756802 466756982 2.090000e-84 324
28 TraesCS6B01G312000 chr7B 98.889 180 2 0 1 180 401788317 401788138 7.530000e-84 322
29 TraesCS6B01G312000 chr7B 73.749 899 202 29 5141 6020 742106455 742107338 7.530000e-84 322
30 TraesCS6B01G312000 chr5B 98.876 178 2 0 1 178 265141774 265141951 9.740000e-83 318
31 TraesCS6B01G312000 chr5B 98.876 178 2 0 1 178 362251635 362251812 9.740000e-83 318
32 TraesCS6B01G312000 chr3A 98.876 178 2 0 1 178 55857185 55857362 9.740000e-83 318
33 TraesCS6B01G312000 chr3A 98.343 181 3 0 1 181 180609402 180609582 9.740000e-83 318
34 TraesCS6B01G312000 chr3A 72.256 656 154 24 5118 5761 632041457 632042096 1.720000e-40 178
35 TraesCS6B01G312000 chr4A 80.749 187 28 7 5116 5298 111286305 111286123 8.140000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G312000 chr6B 559037673 559043692 6019 True 11117.00 11117 100.000000 1 6020 1 chr6B.!!$R2 6019
1 TraesCS6B01G312000 chr6B 559472638 559473265 627 True 721.00 721 87.440000 179 804 1 chr6B.!!$R3 625
2 TraesCS6B01G312000 chr6D 372876731 372881711 4980 False 1994.00 3005 92.151667 801 5114 3 chr6D.!!$F1 4313
3 TraesCS6B01G312000 chr6A 514890111 514894359 4248 False 1343.25 2752 89.711250 801 5114 4 chr6A.!!$F2 4313
4 TraesCS6B01G312000 chr6A 237390867 237391495 628 False 673.00 673 86.076000 180 806 1 chr6A.!!$F1 626
5 TraesCS6B01G312000 chr1D 253150194 253151099 905 True 1203.00 1203 90.739000 5120 6020 1 chr1D.!!$R1 900
6 TraesCS6B01G312000 chr1D 257019601 257020231 630 False 774.00 774 88.906000 179 806 1 chr1D.!!$F1 627
7 TraesCS6B01G312000 chr3D 502061318 502062222 904 True 1201.00 1201 90.728000 5121 6020 1 chr3D.!!$R1 899
8 TraesCS6B01G312000 chr1B 155711527 155712155 628 True 1046.00 1046 96.672000 179 808 1 chr1B.!!$R1 629
9 TraesCS6B01G312000 chr1B 354515970 354516597 627 False 965.00 965 94.427000 179 805 1 chr1B.!!$F1 626
10 TraesCS6B01G312000 chr1B 390276809 390277432 623 False 798.00 798 89.776000 180 804 1 chr1B.!!$F2 624
11 TraesCS6B01G312000 chr2B 152128599 152129221 622 True 1005.00 1005 95.694000 179 805 1 chr2B.!!$R1 626
12 TraesCS6B01G312000 chr5D 370783867 370784759 892 True 957.00 957 86.000000 5121 6020 1 chr5D.!!$R1 899
13 TraesCS6B01G312000 chr7A 186541215 186542513 1298 True 920.00 920 79.697000 3712 5016 1 chr7A.!!$R1 1304
14 TraesCS6B01G312000 chr2D 277212987 277213615 628 True 739.00 739 87.937000 179 805 1 chr2D.!!$R1 626
15 TraesCS6B01G312000 chr2D 499148801 499149706 905 True 673.00 673 80.308000 5125 6020 1 chr2D.!!$R2 895
16 TraesCS6B01G312000 chr5A 608260077 608260700 623 False 723.00 723 87.660000 179 799 1 chr5A.!!$F1 620
17 TraesCS6B01G312000 chr4B 99080299 99081202 903 True 691.00 691 80.786000 5120 6020 1 chr4B.!!$R1 900
18 TraesCS6B01G312000 chr7B 742106455 742107338 883 False 322.00 322 73.749000 5141 6020 1 chr7B.!!$F1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.037160 GGTCCCGGGCAAAAGTAAGA 59.963 55.000 18.49 0.00 0.00 2.10 F
1874 1979 0.170561 GCCTCATCACAGCAGCTTTG 59.829 55.000 1.73 1.73 0.00 2.77 F
3123 3949 0.389296 CACCATATCGGGCGCGATTA 60.389 55.000 38.17 24.95 40.22 1.75 F
3237 4063 1.000827 CGCCACTTGCATACAACCAAA 60.001 47.619 0.00 0.00 41.33 3.28 F
3425 4302 1.183030 TGGTAGTACGTGGCACTGCT 61.183 55.000 16.72 13.31 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2102 0.108138 ATCGGCCACTAACTCACTGC 60.108 55.000 2.24 0.00 0.00 4.40 R
3233 4059 0.033781 CACATGCAAGGGTGGTTTGG 59.966 55.000 8.24 0.00 0.00 3.28 R
4524 5432 0.038599 TGGGCGTGTAGGAGTACTGA 59.961 55.000 0.00 0.00 0.00 3.41 R
4560 5468 1.085091 TGAAGTAGAGCGAGTCGTCC 58.915 55.000 15.08 6.31 0.00 4.79 R
5165 6077 2.036733 TGTTTCGGACGAGATTCCAACT 59.963 45.455 0.00 0.00 35.04 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.789409 GCCCGGGCTTCTTATCATAT 57.211 50.000 38.76 0.00 38.26 1.78
22 23 2.359900 GCCCGGGCTTCTTATCATATG 58.640 52.381 38.76 0.00 38.26 1.78
23 24 2.941415 GCCCGGGCTTCTTATCATATGG 60.941 54.545 38.76 0.00 38.26 2.74
24 25 2.571653 CCCGGGCTTCTTATCATATGGA 59.428 50.000 8.08 0.00 0.00 3.41
25 26 3.200825 CCCGGGCTTCTTATCATATGGAT 59.799 47.826 8.08 0.00 40.14 3.41
26 27 4.194640 CCGGGCTTCTTATCATATGGATG 58.805 47.826 2.13 0.00 36.72 3.51
27 28 3.624861 CGGGCTTCTTATCATATGGATGC 59.375 47.826 2.13 6.03 36.72 3.91
28 29 4.624843 CGGGCTTCTTATCATATGGATGCT 60.625 45.833 2.13 0.00 36.72 3.79
29 30 5.395657 CGGGCTTCTTATCATATGGATGCTA 60.396 44.000 2.13 0.00 36.72 3.49
30 31 6.054295 GGGCTTCTTATCATATGGATGCTAG 58.946 44.000 2.13 0.00 36.72 3.42
31 32 5.526846 GGCTTCTTATCATATGGATGCTAGC 59.473 44.000 8.10 8.10 36.72 3.42
32 33 5.233902 GCTTCTTATCATATGGATGCTAGCG 59.766 44.000 10.77 0.00 36.72 4.26
33 34 6.530019 TTCTTATCATATGGATGCTAGCGA 57.470 37.500 10.77 0.00 36.72 4.93
34 35 5.895928 TCTTATCATATGGATGCTAGCGAC 58.104 41.667 10.77 6.33 36.72 5.19
35 36 5.418840 TCTTATCATATGGATGCTAGCGACA 59.581 40.000 10.77 9.20 36.72 4.35
36 37 3.303881 TCATATGGATGCTAGCGACAC 57.696 47.619 10.77 0.81 32.62 3.67
37 38 2.893489 TCATATGGATGCTAGCGACACT 59.107 45.455 10.77 0.00 32.62 3.55
38 39 4.079253 TCATATGGATGCTAGCGACACTA 58.921 43.478 10.77 0.00 32.62 2.74
39 40 4.706962 TCATATGGATGCTAGCGACACTAT 59.293 41.667 10.77 7.20 32.62 2.12
40 41 3.584406 ATGGATGCTAGCGACACTATC 57.416 47.619 10.77 6.09 0.00 2.08
41 42 2.306847 TGGATGCTAGCGACACTATCA 58.693 47.619 10.77 0.00 31.82 2.15
42 43 2.893489 TGGATGCTAGCGACACTATCAT 59.107 45.455 10.77 0.00 39.77 2.45
43 44 4.079253 TGGATGCTAGCGACACTATCATA 58.921 43.478 10.77 0.00 37.73 2.15
44 45 4.706962 TGGATGCTAGCGACACTATCATAT 59.293 41.667 10.77 0.00 37.73 1.78
45 46 5.885912 TGGATGCTAGCGACACTATCATATA 59.114 40.000 10.77 0.00 37.73 0.86
46 47 6.183360 TGGATGCTAGCGACACTATCATATAC 60.183 42.308 10.77 0.00 37.73 1.47
47 48 5.217895 TGCTAGCGACACTATCATATACG 57.782 43.478 10.77 0.00 0.00 3.06
48 49 4.694037 TGCTAGCGACACTATCATATACGT 59.306 41.667 10.77 0.00 0.00 3.57
49 50 5.022653 GCTAGCGACACTATCATATACGTG 58.977 45.833 0.00 0.00 0.00 4.49
50 51 5.390673 GCTAGCGACACTATCATATACGTGT 60.391 44.000 0.00 0.00 42.72 4.49
51 52 4.784329 AGCGACACTATCATATACGTGTG 58.216 43.478 0.00 0.00 40.37 3.82
52 53 3.361053 GCGACACTATCATATACGTGTGC 59.639 47.826 0.00 0.00 40.37 4.57
53 54 3.912563 CGACACTATCATATACGTGTGCC 59.087 47.826 0.00 0.00 40.37 5.01
54 55 4.555906 CGACACTATCATATACGTGTGCCA 60.556 45.833 0.00 0.00 40.37 4.92
55 56 5.270893 ACACTATCATATACGTGTGCCAA 57.729 39.130 0.00 0.00 38.99 4.52
56 57 5.666462 ACACTATCATATACGTGTGCCAAA 58.334 37.500 0.00 0.00 38.99 3.28
57 58 6.110033 ACACTATCATATACGTGTGCCAAAA 58.890 36.000 0.00 0.00 38.99 2.44
58 59 6.257849 ACACTATCATATACGTGTGCCAAAAG 59.742 38.462 0.00 0.00 38.99 2.27
59 60 4.552166 ATCATATACGTGTGCCAAAAGC 57.448 40.909 0.00 0.00 44.14 3.51
60 61 2.680841 TCATATACGTGTGCCAAAAGCC 59.319 45.455 0.00 0.00 42.71 4.35
61 62 1.080298 TATACGTGTGCCAAAAGCCG 58.920 50.000 0.00 0.00 42.71 5.52
62 63 2.195123 ATACGTGTGCCAAAAGCCGC 62.195 55.000 0.00 0.00 42.71 6.53
63 64 4.263209 CGTGTGCCAAAAGCCGCA 62.263 61.111 0.00 0.00 42.71 5.69
64 65 2.105930 GTGTGCCAAAAGCCGCAA 59.894 55.556 0.00 0.00 42.71 4.85
65 66 1.520342 GTGTGCCAAAAGCCGCAAA 60.520 52.632 0.00 0.00 42.71 3.68
66 67 1.520342 TGTGCCAAAAGCCGCAAAC 60.520 52.632 0.00 0.00 42.71 2.93
67 68 2.279120 TGCCAAAAGCCGCAAACG 60.279 55.556 0.00 0.00 42.71 3.60
79 80 2.907917 CAAACGGTCCCGGGCAAA 60.908 61.111 18.49 0.00 44.69 3.68
80 81 2.123812 AAACGGTCCCGGGCAAAA 60.124 55.556 18.49 0.00 44.69 2.44
81 82 2.197605 AAACGGTCCCGGGCAAAAG 61.198 57.895 18.49 7.70 44.69 2.27
82 83 2.914756 AAACGGTCCCGGGCAAAAGT 62.915 55.000 18.49 8.41 44.69 2.66
83 84 2.054473 AACGGTCCCGGGCAAAAGTA 62.054 55.000 18.49 0.00 44.69 2.24
84 85 1.302671 CGGTCCCGGGCAAAAGTAA 60.303 57.895 18.49 0.00 35.56 2.24
85 86 1.303091 CGGTCCCGGGCAAAAGTAAG 61.303 60.000 18.49 0.00 35.56 2.34
86 87 0.037160 GGTCCCGGGCAAAAGTAAGA 59.963 55.000 18.49 0.00 0.00 2.10
87 88 1.162698 GTCCCGGGCAAAAGTAAGAC 58.837 55.000 18.49 0.00 0.00 3.01
88 89 0.320946 TCCCGGGCAAAAGTAAGACG 60.321 55.000 18.49 0.00 0.00 4.18
89 90 0.320946 CCCGGGCAAAAGTAAGACGA 60.321 55.000 8.08 0.00 0.00 4.20
90 91 0.794473 CCGGGCAAAAGTAAGACGAC 59.206 55.000 0.00 0.00 0.00 4.34
91 92 1.504359 CGGGCAAAAGTAAGACGACA 58.496 50.000 0.00 0.00 0.00 4.35
92 93 1.193874 CGGGCAAAAGTAAGACGACAC 59.806 52.381 0.00 0.00 0.00 3.67
93 94 1.534163 GGGCAAAAGTAAGACGACACC 59.466 52.381 0.00 0.00 0.00 4.16
94 95 1.534163 GGCAAAAGTAAGACGACACCC 59.466 52.381 0.00 0.00 0.00 4.61
95 96 1.193874 GCAAAAGTAAGACGACACCCG 59.806 52.381 0.00 0.00 45.44 5.28
104 105 4.507879 CGACACCCGTGGGAATAC 57.492 61.111 13.01 0.00 38.96 1.89
105 106 1.153509 CGACACCCGTGGGAATACC 60.154 63.158 13.01 0.00 38.96 2.73
106 107 1.153509 GACACCCGTGGGAATACCG 60.154 63.158 13.01 0.00 44.64 4.02
107 108 1.891722 GACACCCGTGGGAATACCGT 61.892 60.000 13.01 0.00 44.64 4.83
108 109 1.448893 CACCCGTGGGAATACCGTG 60.449 63.158 13.01 0.00 44.64 4.94
109 110 2.512974 CCCGTGGGAATACCGTGC 60.513 66.667 0.00 0.00 44.64 5.34
110 111 2.888534 CCGTGGGAATACCGTGCG 60.889 66.667 0.00 0.00 44.64 5.34
111 112 2.125832 CGTGGGAATACCGTGCGT 60.126 61.111 0.00 0.00 44.64 5.24
112 113 2.449525 CGTGGGAATACCGTGCGTG 61.450 63.158 0.00 0.00 44.64 5.34
113 114 1.079681 GTGGGAATACCGTGCGTGA 60.080 57.895 0.00 0.00 44.64 4.35
114 115 1.082117 GTGGGAATACCGTGCGTGAG 61.082 60.000 0.00 0.00 44.64 3.51
115 116 1.520787 GGGAATACCGTGCGTGAGG 60.521 63.158 0.00 0.00 36.97 3.86
116 117 2.171725 GGAATACCGTGCGTGAGGC 61.172 63.158 0.00 0.00 43.96 4.70
117 118 2.125269 AATACCGTGCGTGAGGCC 60.125 61.111 0.00 0.00 42.61 5.19
118 119 4.508128 ATACCGTGCGTGAGGCCG 62.508 66.667 0.00 0.00 42.61 6.13
126 127 2.664851 CGTGAGGCCGCAAAGTGA 60.665 61.111 12.05 0.00 0.00 3.41
127 128 2.034879 CGTGAGGCCGCAAAGTGAT 61.035 57.895 12.05 0.00 0.00 3.06
128 129 0.739462 CGTGAGGCCGCAAAGTGATA 60.739 55.000 12.05 0.00 0.00 2.15
129 130 1.668419 GTGAGGCCGCAAAGTGATAT 58.332 50.000 12.05 0.00 0.00 1.63
130 131 1.331756 GTGAGGCCGCAAAGTGATATG 59.668 52.381 12.05 0.00 0.00 1.78
131 132 1.209261 TGAGGCCGCAAAGTGATATGA 59.791 47.619 6.75 0.00 0.00 2.15
132 133 1.869767 GAGGCCGCAAAGTGATATGAG 59.130 52.381 0.00 0.00 0.00 2.90
133 134 0.947244 GGCCGCAAAGTGATATGAGG 59.053 55.000 0.00 0.00 39.25 3.86
134 135 1.668419 GCCGCAAAGTGATATGAGGT 58.332 50.000 0.00 0.00 38.58 3.85
135 136 1.331756 GCCGCAAAGTGATATGAGGTG 59.668 52.381 0.00 0.00 38.58 4.00
136 137 2.632377 CCGCAAAGTGATATGAGGTGT 58.368 47.619 0.00 0.00 32.55 4.16
137 138 3.009723 CCGCAAAGTGATATGAGGTGTT 58.990 45.455 0.00 0.00 32.55 3.32
138 139 4.188462 CCGCAAAGTGATATGAGGTGTTA 58.812 43.478 0.00 0.00 32.55 2.41
139 140 4.034048 CCGCAAAGTGATATGAGGTGTTAC 59.966 45.833 0.00 0.00 32.55 2.50
140 141 4.629634 CGCAAAGTGATATGAGGTGTTACA 59.370 41.667 0.00 0.00 0.00 2.41
141 142 5.294306 CGCAAAGTGATATGAGGTGTTACAT 59.706 40.000 0.00 0.00 0.00 2.29
142 143 6.489675 GCAAAGTGATATGAGGTGTTACATG 58.510 40.000 0.00 0.00 0.00 3.21
143 144 6.489675 CAAAGTGATATGAGGTGTTACATGC 58.510 40.000 0.00 0.00 0.00 4.06
144 145 5.620738 AGTGATATGAGGTGTTACATGCT 57.379 39.130 0.00 0.00 0.00 3.79
145 146 6.731292 AGTGATATGAGGTGTTACATGCTA 57.269 37.500 0.00 0.00 0.00 3.49
146 147 6.753180 AGTGATATGAGGTGTTACATGCTAG 58.247 40.000 0.00 0.00 0.00 3.42
147 148 6.551227 AGTGATATGAGGTGTTACATGCTAGA 59.449 38.462 0.00 0.00 0.00 2.43
148 149 6.642950 GTGATATGAGGTGTTACATGCTAGAC 59.357 42.308 0.00 0.00 0.00 2.59
149 150 3.887621 TGAGGTGTTACATGCTAGACC 57.112 47.619 6.00 6.00 0.00 3.85
150 151 3.441101 TGAGGTGTTACATGCTAGACCT 58.559 45.455 14.17 14.17 36.51 3.85
151 152 4.606210 TGAGGTGTTACATGCTAGACCTA 58.394 43.478 14.23 3.91 33.89 3.08
152 153 5.208890 TGAGGTGTTACATGCTAGACCTAT 58.791 41.667 14.23 0.00 33.89 2.57
153 154 5.069119 TGAGGTGTTACATGCTAGACCTATG 59.931 44.000 14.23 0.00 33.89 2.23
154 155 4.962995 AGGTGTTACATGCTAGACCTATGT 59.037 41.667 13.03 0.94 38.48 2.29
155 156 5.050490 GGTGTTACATGCTAGACCTATGTG 58.950 45.833 6.70 0.00 36.52 3.21
156 157 5.050490 GTGTTACATGCTAGACCTATGTGG 58.950 45.833 0.00 0.00 42.93 4.17
157 158 2.918712 ACATGCTAGACCTATGTGGC 57.081 50.000 0.00 0.00 40.22 5.01
158 159 2.118679 ACATGCTAGACCTATGTGGCA 58.881 47.619 0.00 0.00 40.22 4.92
159 160 2.707791 ACATGCTAGACCTATGTGGCAT 59.292 45.455 0.00 0.00 40.38 4.40
160 161 3.244353 ACATGCTAGACCTATGTGGCATC 60.244 47.826 0.00 0.00 38.16 3.91
161 162 1.341209 TGCTAGACCTATGTGGCATCG 59.659 52.381 0.00 0.00 40.22 3.84
162 163 1.613925 GCTAGACCTATGTGGCATCGA 59.386 52.381 0.00 0.00 40.22 3.59
163 164 2.352225 GCTAGACCTATGTGGCATCGAG 60.352 54.545 0.00 0.00 40.22 4.04
164 165 1.781786 AGACCTATGTGGCATCGAGT 58.218 50.000 0.00 0.00 40.22 4.18
165 166 1.683917 AGACCTATGTGGCATCGAGTC 59.316 52.381 0.00 0.00 40.22 3.36
166 167 0.385751 ACCTATGTGGCATCGAGTCG 59.614 55.000 6.09 6.09 40.22 4.18
167 168 0.319040 CCTATGTGGCATCGAGTCGG 60.319 60.000 13.54 0.00 0.00 4.79
168 169 0.319040 CTATGTGGCATCGAGTCGGG 60.319 60.000 13.54 6.73 0.00 5.14
169 170 1.744320 TATGTGGCATCGAGTCGGGG 61.744 60.000 13.54 6.34 0.00 5.73
170 171 3.771160 GTGGCATCGAGTCGGGGT 61.771 66.667 13.54 0.00 0.00 4.95
171 172 3.458163 TGGCATCGAGTCGGGGTC 61.458 66.667 13.54 7.34 0.00 4.46
172 173 4.222847 GGCATCGAGTCGGGGTCC 62.223 72.222 13.54 5.56 0.00 4.46
173 174 3.148279 GCATCGAGTCGGGGTCCT 61.148 66.667 13.54 0.00 0.00 3.85
174 175 2.808315 CATCGAGTCGGGGTCCTG 59.192 66.667 13.54 0.00 0.00 3.86
175 176 1.753078 CATCGAGTCGGGGTCCTGA 60.753 63.158 13.54 0.00 0.00 3.86
262 263 1.204941 GCAATACAGACTCTGGACGGT 59.795 52.381 10.86 0.00 35.51 4.83
710 713 0.336737 AAGGGTTTGGTTGTGGGACA 59.663 50.000 0.00 0.00 0.00 4.02
715 718 2.959707 GGTTTGGTTGTGGGACATTGTA 59.040 45.455 0.00 0.00 44.52 2.41
740 745 2.559668 TCTCAACCGACCGTGTAATCTT 59.440 45.455 0.00 0.00 0.00 2.40
780 786 6.896021 TCTTCTATAAAGCTATGGTACGCT 57.104 37.500 0.00 0.00 38.30 5.07
786 792 4.417426 AAAGCTATGGTACGCTATTGGT 57.583 40.909 0.00 0.00 34.96 3.67
817 823 5.299279 TCGAAAAGAAAGATGGTTCAAAGCT 59.701 36.000 0.00 0.00 0.00 3.74
823 829 2.157738 AGATGGTTCAAAGCTGCTGAC 58.842 47.619 1.35 0.00 0.00 3.51
839 845 4.373116 ACAGCTACCCGTGCGTGG 62.373 66.667 0.00 0.00 35.28 4.94
950 973 4.577677 TGAGCCAGCCACCGCAAA 62.578 61.111 0.00 0.00 37.52 3.68
959 987 1.866853 GCCACCGCAAAGGAAGAAGG 61.867 60.000 0.00 0.00 45.00 3.46
962 990 1.378762 CCGCAAAGGAAGAAGGGGA 59.621 57.895 0.00 0.00 45.00 4.81
973 1001 0.858139 AGAAGGGGAGGAGAGAGGGT 60.858 60.000 0.00 0.00 0.00 4.34
975 1003 2.041405 GGGGAGGAGAGAGGGTGG 60.041 72.222 0.00 0.00 0.00 4.61
1053 1083 1.153469 CTTCTCCCTGCTCTTCGCC 60.153 63.158 0.00 0.00 38.05 5.54
1080 1110 3.518998 CCGATCAGGGACGTCGCT 61.519 66.667 27.65 27.65 39.95 4.93
1115 1145 6.154534 TCCTCGCAAGTGCAAGGTATATATAT 59.845 38.462 10.03 0.00 45.28 0.86
1116 1146 7.340999 TCCTCGCAAGTGCAAGGTATATATATA 59.659 37.037 10.03 0.00 45.28 0.86
1117 1147 7.979537 CCTCGCAAGTGCAAGGTATATATATAA 59.020 37.037 1.87 0.00 40.30 0.98
1146 1178 3.308046 CCTTCTTTCCTTCCTTCCTCCTG 60.308 52.174 0.00 0.00 0.00 3.86
1181 1253 6.861065 TTTCTTGGATAGTGTTCTTGTGTC 57.139 37.500 0.00 0.00 0.00 3.67
1256 1328 6.150307 TCAAAGACAACTGTTTTGCTGACTTA 59.850 34.615 0.00 0.00 33.10 2.24
1288 1360 4.874396 AGCAGTACATGATGACTTGACATG 59.126 41.667 0.00 0.00 44.42 3.21
1331 1407 7.837863 TCAGTAGTAACAGAAAAGGGTATGAG 58.162 38.462 0.00 0.00 0.00 2.90
1382 1459 6.394025 AAAATTTACAAGGGCGTAGAACAA 57.606 33.333 0.00 0.00 0.00 2.83
1384 1461 6.584185 AATTTACAAGGGCGTAGAACAATT 57.416 33.333 0.00 0.00 0.00 2.32
1385 1462 5.365403 TTTACAAGGGCGTAGAACAATTG 57.635 39.130 3.24 3.24 0.00 2.32
1405 1482 7.339466 ACAATTGTTAGGATGGGTTAATCTGAC 59.661 37.037 4.92 0.00 0.00 3.51
1465 1550 1.190833 ACTGCTGTCCTGACTCCTGG 61.191 60.000 0.00 0.00 0.00 4.45
1473 1558 2.569404 GTCCTGACTCCTGGAACTGAAT 59.431 50.000 0.00 0.00 41.27 2.57
1489 1577 4.307432 ACTGAATCGAAGTAACACTGTGG 58.693 43.478 13.09 0.00 0.00 4.17
1526 1614 0.249398 ACAGGCCAGATTCACCGTAC 59.751 55.000 5.01 0.00 0.00 3.67
1556 1644 5.158494 CGCTGTAAAAATACTTTCCAACCC 58.842 41.667 0.00 0.00 0.00 4.11
1586 1674 1.512926 AAGCGCCTGTAACTGTCAAG 58.487 50.000 2.29 0.00 0.00 3.02
1596 1684 6.351117 GCCTGTAACTGTCAAGGATAGTAACT 60.351 42.308 7.37 0.00 33.04 2.24
1641 1729 2.483876 GGAGCCAAAACTTCAAAAGGC 58.516 47.619 0.00 0.00 42.31 4.35
1672 1760 1.052617 GAATCTCCTCCCAGTAGCCC 58.947 60.000 0.00 0.00 0.00 5.19
1673 1761 0.400670 AATCTCCTCCCAGTAGCCCC 60.401 60.000 0.00 0.00 0.00 5.80
1674 1762 1.307976 ATCTCCTCCCAGTAGCCCCT 61.308 60.000 0.00 0.00 0.00 4.79
1675 1763 1.003573 CTCCTCCCAGTAGCCCCTT 59.996 63.158 0.00 0.00 0.00 3.95
1719 1808 5.708736 TCTCCACCAGGAAGCAAATAATA 57.291 39.130 0.00 0.00 45.19 0.98
1723 1812 6.354130 TCCACCAGGAAGCAAATAATAGTAC 58.646 40.000 0.00 0.00 42.23 2.73
1724 1813 6.157994 TCCACCAGGAAGCAAATAATAGTACT 59.842 38.462 0.00 0.00 42.23 2.73
1725 1814 6.828785 CCACCAGGAAGCAAATAATAGTACTT 59.171 38.462 0.00 0.00 36.89 2.24
1874 1979 0.170561 GCCTCATCACAGCAGCTTTG 59.829 55.000 1.73 1.73 0.00 2.77
1907 2015 0.865769 CCGCTAATCGCCGCTTAATT 59.134 50.000 0.00 0.00 36.73 1.40
1923 2031 2.109425 AATTAACGCCGCTCCTTTCT 57.891 45.000 0.00 0.00 0.00 2.52
1924 2032 2.109425 ATTAACGCCGCTCCTTTCTT 57.891 45.000 0.00 0.00 0.00 2.52
1925 2033 1.435577 TTAACGCCGCTCCTTTCTTC 58.564 50.000 0.00 0.00 0.00 2.87
1933 2041 1.609783 CTCCTTTCTTCCGGCCCAT 59.390 57.895 0.00 0.00 0.00 4.00
1935 2043 1.754234 CCTTTCTTCCGGCCCATGG 60.754 63.158 4.14 4.14 0.00 3.66
1965 2079 4.221422 ACATGGCCCCGATCGACG 62.221 66.667 18.66 6.87 42.18 5.12
2042 2171 1.883084 GTGACGTCCATCCATCGGC 60.883 63.158 14.12 0.00 0.00 5.54
2064 2193 4.530325 CAATTGCCCCGTACGCGC 62.530 66.667 10.49 13.91 36.67 6.86
2178 2314 2.442212 TGTATACCCACACACACACG 57.558 50.000 0.00 0.00 0.00 4.49
2180 2316 1.273048 GTATACCCACACACACACGGA 59.727 52.381 0.00 0.00 0.00 4.69
2182 2318 1.750341 TACCCACACACACACGGAGG 61.750 60.000 0.00 0.00 0.00 4.30
2183 2319 2.504032 CCACACACACACGGAGGT 59.496 61.111 0.00 0.00 0.00 3.85
2249 2388 2.256461 GCTTTTGTGGCTCGGCAG 59.744 61.111 0.00 0.00 0.00 4.85
2270 2409 0.612229 TACCCACGCCGGAAATGTTA 59.388 50.000 5.05 0.00 36.56 2.41
2290 2429 3.089784 GCGTGGAATGATTCGCGT 58.910 55.556 17.30 0.00 39.35 6.01
2337 2481 3.180449 AGGTCCATCCTGAACACCA 57.820 52.632 0.00 0.00 46.19 4.17
2381 2525 3.937814 TGATTATCAGAGCGGTTGTTGT 58.062 40.909 0.00 0.00 0.00 3.32
2390 2534 2.589442 GGTTGTTGTCCGTCCGCA 60.589 61.111 0.00 0.00 0.00 5.69
2411 2555 6.207928 CGCAAATCATCCAATTAATGCAGTA 58.792 36.000 0.00 0.00 33.00 2.74
2415 2559 7.886629 AATCATCCAATTAATGCAGTAGTGT 57.113 32.000 0.00 0.00 0.00 3.55
2417 2561 8.978874 ATCATCCAATTAATGCAGTAGTGTTA 57.021 30.769 0.00 0.00 0.00 2.41
2507 2655 4.590850 AAGGTCACCTTTCATCTTTTGC 57.409 40.909 2.03 0.00 41.69 3.68
2508 2656 2.893489 AGGTCACCTTTCATCTTTTGCC 59.107 45.455 0.00 0.00 0.00 4.52
2509 2657 2.893489 GGTCACCTTTCATCTTTTGCCT 59.107 45.455 0.00 0.00 0.00 4.75
2510 2658 3.305608 GGTCACCTTTCATCTTTTGCCTG 60.306 47.826 0.00 0.00 0.00 4.85
2511 2659 3.569701 GTCACCTTTCATCTTTTGCCTGA 59.430 43.478 0.00 0.00 0.00 3.86
2512 2660 4.037923 GTCACCTTTCATCTTTTGCCTGAA 59.962 41.667 0.00 0.00 0.00 3.02
2513 2661 4.834496 TCACCTTTCATCTTTTGCCTGAAT 59.166 37.500 0.00 0.00 0.00 2.57
2572 2720 3.804036 TGGCATGTTATGGTAGTACTGC 58.196 45.455 5.39 3.50 0.00 4.40
2624 2773 2.034221 GAACTGACTGGTGGCCCC 59.966 66.667 0.00 0.85 0.00 5.80
2625 2774 2.450502 AACTGACTGGTGGCCCCT 60.451 61.111 0.00 0.00 0.00 4.79
2626 2775 1.151899 AACTGACTGGTGGCCCCTA 60.152 57.895 0.00 0.00 0.00 3.53
2627 2776 0.770557 AACTGACTGGTGGCCCCTAA 60.771 55.000 0.00 0.00 0.00 2.69
2654 2809 0.903924 TGGCAACCACCCCAATCATG 60.904 55.000 0.00 0.00 0.00 3.07
2741 2902 3.862063 CTTGCTTGCCGACGTGTGC 62.862 63.158 0.00 0.00 0.00 4.57
2773 2934 4.349663 TGGACTTTTCAACGTGACAAAG 57.650 40.909 10.53 10.53 34.14 2.77
2815 2982 6.152661 TCTGCGAACAAGGATTCCAAAATAAT 59.847 34.615 5.29 0.00 0.00 1.28
2816 2983 7.338196 TCTGCGAACAAGGATTCCAAAATAATA 59.662 33.333 5.29 0.00 0.00 0.98
2817 2984 7.254852 TGCGAACAAGGATTCCAAAATAATAC 58.745 34.615 5.29 0.00 0.00 1.89
2818 2985 6.413818 GCGAACAAGGATTCCAAAATAATACG 59.586 38.462 5.29 0.00 0.00 3.06
2857 3024 6.967135 GTATATAGCTGGTATATACGCTGCA 58.033 40.000 27.69 10.89 43.19 4.41
2858 3025 6.656632 ATATAGCTGGTATATACGCTGCAT 57.343 37.500 19.63 16.39 33.21 3.96
2859 3026 2.964740 AGCTGGTATATACGCTGCATG 58.035 47.619 22.72 0.00 0.00 4.06
2860 3027 1.394917 GCTGGTATATACGCTGCATGC 59.605 52.381 11.82 11.82 38.57 4.06
2861 3028 2.687370 CTGGTATATACGCTGCATGCA 58.313 47.619 21.29 21.29 43.06 3.96
2862 3029 3.264947 CTGGTATATACGCTGCATGCAT 58.735 45.455 22.97 9.42 43.06 3.96
2863 3030 3.002102 TGGTATATACGCTGCATGCATG 58.998 45.455 22.97 22.70 43.06 4.06
2864 3031 3.002791 GGTATATACGCTGCATGCATGT 58.997 45.455 26.79 23.51 43.06 3.21
2892 3061 7.655236 CAATGATGCAAAATTTGTGTAGGAA 57.345 32.000 7.60 0.00 0.00 3.36
2906 3075 4.469586 TGTGTAGGAATGTTGAGATAGGCA 59.530 41.667 0.00 0.00 0.00 4.75
2908 3077 5.294552 GTGTAGGAATGTTGAGATAGGCAAC 59.705 44.000 0.00 0.00 44.40 4.17
2929 3098 6.541086 CAACTCTAGATGAAATGTGCAAGTC 58.459 40.000 0.00 0.00 0.00 3.01
2943 3112 0.609131 CAAGTCCCACCCCACATGTC 60.609 60.000 0.00 0.00 0.00 3.06
2945 3114 0.846427 AGTCCCACCCCACATGTCAT 60.846 55.000 0.00 0.00 0.00 3.06
2946 3115 0.680921 GTCCCACCCCACATGTCATG 60.681 60.000 11.41 11.41 0.00 3.07
2947 3116 1.139498 TCCCACCCCACATGTCATGT 61.139 55.000 12.87 12.87 46.22 3.21
2977 3803 9.506018 CATATATGTGACAGTATTGATTCCCAA 57.494 33.333 4.43 0.00 39.41 4.12
3003 3829 8.051901 AGAGTAAAAATAAACATGGTGCTACC 57.948 34.615 0.00 0.00 39.22 3.18
3078 3904 2.005451 CACATGTTGCAGTAGCCTCTC 58.995 52.381 0.00 0.00 41.13 3.20
3079 3905 1.905215 ACATGTTGCAGTAGCCTCTCT 59.095 47.619 0.00 0.00 41.13 3.10
3080 3906 2.277969 CATGTTGCAGTAGCCTCTCTG 58.722 52.381 0.00 0.00 41.13 3.35
3123 3949 0.389296 CACCATATCGGGCGCGATTA 60.389 55.000 38.17 24.95 40.22 1.75
3127 3953 2.223021 CCATATCGGGCGCGATTAAATG 60.223 50.000 38.17 32.02 0.00 2.32
3194 4020 1.052287 CATTCTCGTGCGCAAAAACC 58.948 50.000 14.00 0.00 0.00 3.27
3229 4055 2.212652 GACATGATCGCCACTTGCATA 58.787 47.619 0.00 0.00 41.33 3.14
3232 4058 2.106477 TGATCGCCACTTGCATACAA 57.894 45.000 0.00 0.00 41.33 2.41
3233 4059 1.737236 TGATCGCCACTTGCATACAAC 59.263 47.619 0.00 0.00 41.33 3.32
3237 4063 1.000827 CGCCACTTGCATACAACCAAA 60.001 47.619 0.00 0.00 41.33 3.28
3255 4122 2.014010 AACCACCCTTGCATGTGAAT 57.986 45.000 11.77 0.00 34.37 2.57
3258 4125 1.894466 CCACCCTTGCATGTGAATGAA 59.106 47.619 11.77 0.00 34.37 2.57
3368 4235 6.126681 ACACCTCCAAATCTGATGACATATGA 60.127 38.462 10.38 0.00 0.00 2.15
3369 4236 6.204301 CACCTCCAAATCTGATGACATATGAC 59.796 42.308 10.38 3.62 0.00 3.06
3425 4302 1.183030 TGGTAGTACGTGGCACTGCT 61.183 55.000 16.72 13.31 0.00 4.24
3488 4370 2.611751 ACATCGATCACTCTCAGTCTCG 59.388 50.000 0.00 0.00 33.90 4.04
3571 4462 2.047274 AGTGGTTGCCGACGATGG 60.047 61.111 0.00 0.00 0.00 3.51
3596 4487 1.210545 GAACGTGCGAACGGTCTTGA 61.211 55.000 26.78 0.00 45.41 3.02
3598 4489 1.371267 CGTGCGAACGGTCTTGAGA 60.371 57.895 8.46 0.00 0.00 3.27
3607 4498 2.966050 ACGGTCTTGAGATCTTGCTTC 58.034 47.619 0.00 0.00 0.00 3.86
3624 4522 2.162408 GCTTCTCAGCGGCAAACTAATT 59.838 45.455 1.45 0.00 35.91 1.40
3634 4534 4.491441 GCGGCAAACTAATTCGTACTGTAC 60.491 45.833 7.90 7.90 0.00 2.90
3660 4560 7.827236 CCAATAGTGAATACTGTCAGGGTTAAA 59.173 37.037 4.53 0.00 37.78 1.52
3672 4572 4.937015 GTCAGGGTTAAATAAGTTGCGGTA 59.063 41.667 0.00 0.00 0.00 4.02
3686 4588 4.769215 GTTGCGGTAACTTTGAAGTACTG 58.231 43.478 0.00 3.29 38.57 2.74
3699 4601 2.802787 AGTACTGACTGACTGTGTGC 57.197 50.000 0.00 0.00 33.41 4.57
3934 4839 2.672651 TCTACCGGGCGAACGACA 60.673 61.111 6.32 0.00 35.47 4.35
3936 4841 1.373246 CTACCGGGCGAACGACAAA 60.373 57.895 6.32 0.00 35.47 2.83
4524 5432 3.007323 GGCTCCTACAACCCGGGT 61.007 66.667 24.16 24.16 0.00 5.28
4705 5613 1.975407 CCCACCACCGTCTACGACT 60.975 63.158 3.65 0.00 43.02 4.18
5042 5950 1.308998 CTTTGGAAGAAGGTGCACGT 58.691 50.000 11.45 8.83 0.00 4.49
5044 5952 1.873698 TTGGAAGAAGGTGCACGTAC 58.126 50.000 13.22 5.11 0.00 3.67
5047 5955 1.941476 GAAGAAGGTGCACGTACGCG 61.941 60.000 16.72 3.53 44.93 6.01
5048 5956 4.130281 GAAGGTGCACGTACGCGC 62.130 66.667 20.78 20.78 42.83 6.86
5114 6022 1.069296 GCTGCATGCACGTTCACTTTA 60.069 47.619 18.46 0.00 42.31 1.85
5115 6023 2.414559 GCTGCATGCACGTTCACTTTAT 60.415 45.455 18.46 0.00 42.31 1.40
5116 6024 3.419915 CTGCATGCACGTTCACTTTATC 58.580 45.455 18.46 0.00 0.00 1.75
5117 6025 3.073678 TGCATGCACGTTCACTTTATCT 58.926 40.909 18.46 0.00 0.00 1.98
5118 6026 3.501828 TGCATGCACGTTCACTTTATCTT 59.498 39.130 18.46 0.00 0.00 2.40
5119 6027 4.023279 TGCATGCACGTTCACTTTATCTTT 60.023 37.500 18.46 0.00 0.00 2.52
5165 6077 7.583230 TCGCCGCTTTATTAACTTAAGAAAAA 58.417 30.769 10.09 0.54 29.64 1.94
5245 6157 1.205655 CGAGTTGAGCTCATCTCCCAA 59.794 52.381 33.78 12.51 44.33 4.12
5291 6203 2.526120 GGCATTCGCACTACGGCTC 61.526 63.158 0.00 0.00 43.89 4.70
5300 6212 1.681327 ACTACGGCTCACCCACGAT 60.681 57.895 0.00 0.00 0.00 3.73
5346 6258 1.134901 CTCGACTTGACGTCCTCGG 59.865 63.158 20.62 11.73 39.56 4.63
5433 6345 4.705110 TCACTTTCCAGATGGAGTTTGA 57.295 40.909 1.13 3.44 46.36 2.69
5453 6365 0.035458 CAACCCCAACTCTTCTCGCT 59.965 55.000 0.00 0.00 0.00 4.93
5456 6368 1.187087 CCCCAACTCTTCTCGCTAGT 58.813 55.000 0.00 0.00 0.00 2.57
5479 6391 1.589716 ATCGCCTTCTTGCAAGCCAC 61.590 55.000 21.99 9.67 0.00 5.01
5528 6440 2.162208 CGTCCCCAAAACATGACATGAG 59.838 50.000 22.19 8.37 0.00 2.90
5572 6484 1.004560 CACGCAGGATGACACCAGT 60.005 57.895 0.00 0.00 39.69 4.00
5594 6506 1.355720 CCTCCTCTCCCCATGTGTTTT 59.644 52.381 0.00 0.00 0.00 2.43
5596 6508 0.890683 CCTCTCCCCATGTGTTTTGC 59.109 55.000 0.00 0.00 0.00 3.68
5636 6548 1.502231 CTTTGATCCAGCCCGTATCG 58.498 55.000 0.00 0.00 0.00 2.92
5669 6587 0.398381 TGCCCCTTTCTTTTGGCTGT 60.398 50.000 0.00 0.00 44.32 4.40
5677 6595 2.888834 TCTTTTGGCTGTTTTGGCTC 57.111 45.000 0.00 0.00 0.00 4.70
5720 6638 1.623811 TCCCACTCTTTGACTAGTGCC 59.376 52.381 0.00 0.00 41.45 5.01
5763 6681 1.083806 TGCTGCAGTAATCTTCCGCG 61.084 55.000 16.64 0.00 0.00 6.46
5774 6722 1.145759 TCTTCCGCGTCGCATCATTC 61.146 55.000 18.75 0.00 0.00 2.67
5815 6763 1.135689 CACGGCTTGAACCATAACAGC 60.136 52.381 0.00 0.00 0.00 4.40
5826 6774 4.148128 ACCATAACAGCCTTCTCATGAG 57.852 45.455 17.07 17.07 0.00 2.90
5831 6779 2.203126 GCCTTCTCATGAGCCGGG 60.203 66.667 23.28 20.66 0.00 5.73
5858 6806 0.108615 CGAACCACTCCAGTAGCCAG 60.109 60.000 0.00 0.00 0.00 4.85
5861 6809 0.977395 ACCACTCCAGTAGCCAGTTC 59.023 55.000 0.00 0.00 0.00 3.01
5925 6873 1.831736 CCAATACTCCCAACTCCGAGT 59.168 52.381 0.00 0.00 42.03 4.18
5960 6908 3.672447 CACACAGCATGCGGGCAA 61.672 61.111 21.96 0.00 42.53 4.52
5984 6932 3.057174 CCCAGAATCGATGGTAGCTAGTC 60.057 52.174 0.00 0.00 35.96 2.59
5990 6938 4.425180 TCGATGGTAGCTAGTCTCTTCT 57.575 45.455 0.00 0.00 0.00 2.85
6008 6956 0.583438 CTCGTCCACAAGCAACACAG 59.417 55.000 0.00 0.00 0.00 3.66
6011 6959 1.003545 CGTCCACAAGCAACACAGAAG 60.004 52.381 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.359900 CATATGATAAGAAGCCCGGGC 58.640 52.381 39.29 39.29 42.33 6.13
3 4 2.571653 TCCATATGATAAGAAGCCCGGG 59.428 50.000 19.09 19.09 0.00 5.73
4 5 3.981071 TCCATATGATAAGAAGCCCGG 57.019 47.619 3.65 0.00 0.00 5.73
5 6 3.624861 GCATCCATATGATAAGAAGCCCG 59.375 47.826 3.65 0.00 34.84 6.13
6 7 4.853007 AGCATCCATATGATAAGAAGCCC 58.147 43.478 3.65 0.00 34.84 5.19
7 8 5.526846 GCTAGCATCCATATGATAAGAAGCC 59.473 44.000 10.63 0.00 33.75 4.35
8 9 5.233902 CGCTAGCATCCATATGATAAGAAGC 59.766 44.000 16.45 5.73 33.75 3.86
9 10 6.475076 GTCGCTAGCATCCATATGATAAGAAG 59.525 42.308 16.45 0.00 33.75 2.85
10 11 6.071391 TGTCGCTAGCATCCATATGATAAGAA 60.071 38.462 16.45 0.00 33.75 2.52
11 12 5.418840 TGTCGCTAGCATCCATATGATAAGA 59.581 40.000 16.45 0.00 33.75 2.10
12 13 5.518128 GTGTCGCTAGCATCCATATGATAAG 59.482 44.000 16.45 0.00 33.75 1.73
13 14 5.185828 AGTGTCGCTAGCATCCATATGATAA 59.814 40.000 16.45 0.00 33.75 1.75
14 15 4.706962 AGTGTCGCTAGCATCCATATGATA 59.293 41.667 16.45 0.00 34.84 2.15
15 16 3.513119 AGTGTCGCTAGCATCCATATGAT 59.487 43.478 16.45 0.00 34.84 2.45
16 17 2.893489 AGTGTCGCTAGCATCCATATGA 59.107 45.455 16.45 0.00 34.84 2.15
17 18 3.309961 AGTGTCGCTAGCATCCATATG 57.690 47.619 16.45 0.00 36.09 1.78
18 19 4.706962 TGATAGTGTCGCTAGCATCCATAT 59.293 41.667 16.45 6.97 40.72 1.78
19 20 4.079253 TGATAGTGTCGCTAGCATCCATA 58.921 43.478 16.45 1.98 40.72 2.74
20 21 2.893489 TGATAGTGTCGCTAGCATCCAT 59.107 45.455 16.45 0.00 40.72 3.41
21 22 2.306847 TGATAGTGTCGCTAGCATCCA 58.693 47.619 16.45 4.65 40.72 3.41
26 27 5.022653 CACGTATATGATAGTGTCGCTAGC 58.977 45.833 4.06 4.06 36.67 3.42
27 28 6.016111 CACACGTATATGATAGTGTCGCTAG 58.984 44.000 0.00 0.00 44.83 3.42
28 29 5.616204 GCACACGTATATGATAGTGTCGCTA 60.616 44.000 0.00 0.00 44.83 4.26
29 30 4.784329 CACACGTATATGATAGTGTCGCT 58.216 43.478 0.00 0.00 44.83 4.93
30 31 3.361053 GCACACGTATATGATAGTGTCGC 59.639 47.826 0.00 2.56 44.83 5.19
31 32 3.912563 GGCACACGTATATGATAGTGTCG 59.087 47.826 0.00 0.00 44.83 4.35
32 33 4.866921 TGGCACACGTATATGATAGTGTC 58.133 43.478 0.00 6.75 44.83 3.67
34 35 6.597262 TTTTGGCACACGTATATGATAGTG 57.403 37.500 0.00 5.89 39.29 2.74
35 36 5.236478 GCTTTTGGCACACGTATATGATAGT 59.764 40.000 0.00 0.00 39.29 2.12
36 37 5.334105 GGCTTTTGGCACACGTATATGATAG 60.334 44.000 0.00 0.00 45.26 2.08
37 38 4.513692 GGCTTTTGGCACACGTATATGATA 59.486 41.667 0.00 0.00 45.26 2.15
38 39 3.315191 GGCTTTTGGCACACGTATATGAT 59.685 43.478 0.00 0.00 45.26 2.45
39 40 2.680841 GGCTTTTGGCACACGTATATGA 59.319 45.455 0.00 0.00 45.26 2.15
40 41 2.538737 CGGCTTTTGGCACACGTATATG 60.539 50.000 0.00 0.00 46.39 1.78
41 42 1.668751 CGGCTTTTGGCACACGTATAT 59.331 47.619 0.00 0.00 46.39 0.86
42 43 1.080298 CGGCTTTTGGCACACGTATA 58.920 50.000 0.00 0.00 46.39 1.47
43 44 1.873165 CGGCTTTTGGCACACGTAT 59.127 52.632 0.00 0.00 46.39 3.06
44 45 2.899044 GCGGCTTTTGGCACACGTA 61.899 57.895 0.00 0.00 46.39 3.57
45 46 4.264638 GCGGCTTTTGGCACACGT 62.265 61.111 0.00 0.00 46.39 4.49
46 47 3.764810 TTGCGGCTTTTGGCACACG 62.765 57.895 0.00 0.00 46.39 4.49
47 48 1.520342 TTTGCGGCTTTTGGCACAC 60.520 52.632 0.00 0.00 46.39 3.82
48 49 1.520342 GTTTGCGGCTTTTGGCACA 60.520 52.632 0.00 0.00 46.39 4.57
49 50 2.584967 CGTTTGCGGCTTTTGGCAC 61.585 57.895 0.00 0.00 46.39 5.01
50 51 2.279120 CGTTTGCGGCTTTTGGCA 60.279 55.556 0.00 0.00 46.39 4.92
62 63 2.414840 CTTTTGCCCGGGACCGTTTG 62.415 60.000 29.31 3.03 37.81 2.93
63 64 2.123812 TTTTGCCCGGGACCGTTT 60.124 55.556 29.31 0.00 37.81 3.60
64 65 2.054473 TACTTTTGCCCGGGACCGTT 62.054 55.000 29.31 5.30 37.81 4.44
65 66 2.054473 TTACTTTTGCCCGGGACCGT 62.054 55.000 29.31 15.27 37.81 4.83
66 67 1.302671 TTACTTTTGCCCGGGACCG 60.303 57.895 29.31 9.53 39.44 4.79
67 68 0.037160 TCTTACTTTTGCCCGGGACC 59.963 55.000 29.31 8.20 0.00 4.46
68 69 1.162698 GTCTTACTTTTGCCCGGGAC 58.837 55.000 29.31 16.95 0.00 4.46
69 70 0.320946 CGTCTTACTTTTGCCCGGGA 60.321 55.000 29.31 6.60 0.00 5.14
70 71 0.320946 TCGTCTTACTTTTGCCCGGG 60.321 55.000 19.09 19.09 0.00 5.73
71 72 0.794473 GTCGTCTTACTTTTGCCCGG 59.206 55.000 0.00 0.00 0.00 5.73
72 73 1.193874 GTGTCGTCTTACTTTTGCCCG 59.806 52.381 0.00 0.00 0.00 6.13
73 74 1.534163 GGTGTCGTCTTACTTTTGCCC 59.466 52.381 0.00 0.00 0.00 5.36
74 75 1.534163 GGGTGTCGTCTTACTTTTGCC 59.466 52.381 0.00 0.00 0.00 4.52
75 76 1.193874 CGGGTGTCGTCTTACTTTTGC 59.806 52.381 0.00 0.00 0.00 3.68
87 88 1.153509 GGTATTCCCACGGGTGTCG 60.154 63.158 1.07 0.00 45.88 4.35
88 89 1.153509 CGGTATTCCCACGGGTGTC 60.154 63.158 1.07 0.00 36.47 3.67
89 90 1.914764 ACGGTATTCCCACGGGTGT 60.915 57.895 1.07 0.00 36.47 4.16
90 91 1.448893 CACGGTATTCCCACGGGTG 60.449 63.158 1.07 0.00 36.47 4.61
91 92 2.983791 CACGGTATTCCCACGGGT 59.016 61.111 1.07 0.00 36.47 5.28
92 93 2.512974 GCACGGTATTCCCACGGG 60.513 66.667 0.00 0.00 0.00 5.28
93 94 2.888534 CGCACGGTATTCCCACGG 60.889 66.667 0.00 0.00 0.00 4.94
94 95 2.125832 ACGCACGGTATTCCCACG 60.126 61.111 0.00 0.00 0.00 4.94
95 96 1.079681 TCACGCACGGTATTCCCAC 60.080 57.895 0.00 0.00 0.00 4.61
96 97 1.216977 CTCACGCACGGTATTCCCA 59.783 57.895 0.00 0.00 0.00 4.37
97 98 1.520787 CCTCACGCACGGTATTCCC 60.521 63.158 0.00 0.00 0.00 3.97
98 99 2.171725 GCCTCACGCACGGTATTCC 61.172 63.158 0.00 0.00 37.47 3.01
99 100 2.171725 GGCCTCACGCACGGTATTC 61.172 63.158 0.00 0.00 40.31 1.75
100 101 2.125269 GGCCTCACGCACGGTATT 60.125 61.111 0.00 0.00 40.31 1.89
101 102 4.508128 CGGCCTCACGCACGGTAT 62.508 66.667 0.00 0.00 40.31 2.73
109 110 0.739462 TATCACTTTGCGGCCTCACG 60.739 55.000 0.00 0.00 0.00 4.35
110 111 1.331756 CATATCACTTTGCGGCCTCAC 59.668 52.381 0.00 0.00 0.00 3.51
111 112 1.209261 TCATATCACTTTGCGGCCTCA 59.791 47.619 0.00 0.00 0.00 3.86
112 113 1.869767 CTCATATCACTTTGCGGCCTC 59.130 52.381 0.00 0.00 0.00 4.70
113 114 1.475751 CCTCATATCACTTTGCGGCCT 60.476 52.381 0.00 0.00 0.00 5.19
114 115 0.947244 CCTCATATCACTTTGCGGCC 59.053 55.000 0.00 0.00 0.00 6.13
115 116 1.331756 CACCTCATATCACTTTGCGGC 59.668 52.381 0.00 0.00 0.00 6.53
116 117 2.632377 ACACCTCATATCACTTTGCGG 58.368 47.619 0.00 0.00 0.00 5.69
117 118 4.629634 TGTAACACCTCATATCACTTTGCG 59.370 41.667 0.00 0.00 0.00 4.85
118 119 6.489675 CATGTAACACCTCATATCACTTTGC 58.510 40.000 0.00 0.00 0.00 3.68
119 120 6.317140 AGCATGTAACACCTCATATCACTTTG 59.683 38.462 0.00 0.00 0.00 2.77
120 121 6.418101 AGCATGTAACACCTCATATCACTTT 58.582 36.000 0.00 0.00 0.00 2.66
121 122 5.994250 AGCATGTAACACCTCATATCACTT 58.006 37.500 0.00 0.00 0.00 3.16
122 123 5.620738 AGCATGTAACACCTCATATCACT 57.379 39.130 0.00 0.00 0.00 3.41
123 124 6.642950 GTCTAGCATGTAACACCTCATATCAC 59.357 42.308 0.00 0.00 0.00 3.06
124 125 6.239317 GGTCTAGCATGTAACACCTCATATCA 60.239 42.308 0.00 0.00 0.00 2.15
125 126 6.015010 AGGTCTAGCATGTAACACCTCATATC 60.015 42.308 0.00 0.00 27.26 1.63
126 127 5.841237 AGGTCTAGCATGTAACACCTCATAT 59.159 40.000 0.00 0.00 27.26 1.78
127 128 5.208890 AGGTCTAGCATGTAACACCTCATA 58.791 41.667 0.00 0.00 27.26 2.15
128 129 4.033709 AGGTCTAGCATGTAACACCTCAT 58.966 43.478 0.00 0.00 27.26 2.90
129 130 3.441101 AGGTCTAGCATGTAACACCTCA 58.559 45.455 0.00 0.00 27.26 3.86
130 131 5.069251 ACATAGGTCTAGCATGTAACACCTC 59.931 44.000 10.66 0.00 35.77 3.85
131 132 4.962995 ACATAGGTCTAGCATGTAACACCT 59.037 41.667 11.69 11.69 37.93 4.00
132 133 5.050490 CACATAGGTCTAGCATGTAACACC 58.950 45.833 0.00 0.00 31.81 4.16
133 134 5.050490 CCACATAGGTCTAGCATGTAACAC 58.950 45.833 0.00 0.00 31.81 3.32
134 135 4.442893 GCCACATAGGTCTAGCATGTAACA 60.443 45.833 0.00 0.00 40.61 2.41
135 136 4.058817 GCCACATAGGTCTAGCATGTAAC 58.941 47.826 0.00 0.00 40.61 2.50
136 137 3.709141 TGCCACATAGGTCTAGCATGTAA 59.291 43.478 0.00 0.00 40.61 2.41
137 138 3.304829 TGCCACATAGGTCTAGCATGTA 58.695 45.455 0.00 0.00 40.61 2.29
138 139 2.118679 TGCCACATAGGTCTAGCATGT 58.881 47.619 0.00 0.00 40.61 3.21
139 140 2.916702 TGCCACATAGGTCTAGCATG 57.083 50.000 0.00 0.00 40.61 4.06
140 141 2.028658 CGATGCCACATAGGTCTAGCAT 60.029 50.000 8.47 8.47 43.25 3.79
141 142 1.341209 CGATGCCACATAGGTCTAGCA 59.659 52.381 0.00 0.00 40.61 3.49
142 143 1.613925 TCGATGCCACATAGGTCTAGC 59.386 52.381 0.00 0.00 40.61 3.42
143 144 2.887783 ACTCGATGCCACATAGGTCTAG 59.112 50.000 0.00 0.00 40.61 2.43
144 145 2.885266 GACTCGATGCCACATAGGTCTA 59.115 50.000 0.00 0.00 40.61 2.59
145 146 1.683917 GACTCGATGCCACATAGGTCT 59.316 52.381 0.00 0.00 40.61 3.85
146 147 1.600663 CGACTCGATGCCACATAGGTC 60.601 57.143 0.00 0.00 40.61 3.85
147 148 0.385751 CGACTCGATGCCACATAGGT 59.614 55.000 0.00 0.00 40.61 3.08
148 149 0.319040 CCGACTCGATGCCACATAGG 60.319 60.000 0.00 0.00 41.84 2.57
149 150 0.319040 CCCGACTCGATGCCACATAG 60.319 60.000 0.00 0.00 0.00 2.23
150 151 1.739667 CCCGACTCGATGCCACATA 59.260 57.895 0.00 0.00 0.00 2.29
151 152 2.501128 CCCGACTCGATGCCACAT 59.499 61.111 0.00 0.00 0.00 3.21
152 153 3.770040 CCCCGACTCGATGCCACA 61.770 66.667 0.00 0.00 0.00 4.17
153 154 3.718210 GACCCCGACTCGATGCCAC 62.718 68.421 0.00 0.00 0.00 5.01
154 155 3.458163 GACCCCGACTCGATGCCA 61.458 66.667 0.00 0.00 0.00 4.92
155 156 4.222847 GGACCCCGACTCGATGCC 62.223 72.222 0.00 0.00 0.00 4.40
156 157 3.148279 AGGACCCCGACTCGATGC 61.148 66.667 0.00 0.00 0.00 3.91
157 158 1.753078 TCAGGACCCCGACTCGATG 60.753 63.158 0.00 0.00 0.00 3.84
158 159 1.753463 GTCAGGACCCCGACTCGAT 60.753 63.158 0.00 0.00 0.00 3.59
159 160 2.360852 GTCAGGACCCCGACTCGA 60.361 66.667 0.00 0.00 0.00 4.04
160 161 2.675423 TGTCAGGACCCCGACTCG 60.675 66.667 11.80 0.00 31.80 4.18
161 162 2.647158 GGTGTCAGGACCCCGACTC 61.647 68.421 11.80 8.59 31.80 3.36
162 163 1.797018 TAGGTGTCAGGACCCCGACT 61.797 60.000 11.80 0.00 36.56 4.18
163 164 0.686769 ATAGGTGTCAGGACCCCGAC 60.687 60.000 4.95 4.95 36.56 4.79
164 165 0.686441 CATAGGTGTCAGGACCCCGA 60.686 60.000 0.00 0.00 36.56 5.14
165 166 1.823295 CATAGGTGTCAGGACCCCG 59.177 63.158 0.00 0.00 36.56 5.73
166 167 0.983378 AGCATAGGTGTCAGGACCCC 60.983 60.000 0.00 0.00 36.56 4.95
167 168 0.179000 CAGCATAGGTGTCAGGACCC 59.821 60.000 0.00 0.00 36.56 4.46
168 169 0.179000 CCAGCATAGGTGTCAGGACC 59.821 60.000 0.00 0.00 36.09 4.46
169 170 0.462759 GCCAGCATAGGTGTCAGGAC 60.463 60.000 0.00 0.00 0.00 3.85
170 171 0.909133 TGCCAGCATAGGTGTCAGGA 60.909 55.000 0.00 0.00 0.00 3.86
171 172 0.182061 ATGCCAGCATAGGTGTCAGG 59.818 55.000 2.61 0.00 34.49 3.86
172 173 2.916702 TATGCCAGCATAGGTGTCAG 57.083 50.000 8.25 0.00 37.82 3.51
173 174 2.224597 CCATATGCCAGCATAGGTGTCA 60.225 50.000 19.47 0.00 41.51 3.58
174 175 2.038952 TCCATATGCCAGCATAGGTGTC 59.961 50.000 19.47 0.00 41.51 3.67
175 176 2.057140 TCCATATGCCAGCATAGGTGT 58.943 47.619 19.47 1.37 41.51 4.16
176 177 2.865119 TCCATATGCCAGCATAGGTG 57.135 50.000 19.47 12.88 41.51 4.00
177 178 2.713167 ACTTCCATATGCCAGCATAGGT 59.287 45.455 19.47 9.91 41.51 3.08
278 279 2.983192 TCTTTGGTCCTGTAACCCATGA 59.017 45.455 0.00 0.00 38.65 3.07
710 713 2.738643 CGGTCGGTTGAGAGCATACAAT 60.739 50.000 0.00 0.00 38.44 2.71
715 718 1.079819 CACGGTCGGTTGAGAGCAT 60.080 57.895 0.00 0.00 38.44 3.79
756 762 7.286215 AGCGTACCATAGCTTTATAGAAGAA 57.714 36.000 0.00 0.00 41.52 2.52
780 786 5.486735 TTCTTTTCGAGGGTACACCAATA 57.513 39.130 0.00 0.00 43.89 1.90
786 792 4.041198 ACCATCTTTCTTTTCGAGGGTACA 59.959 41.667 0.00 0.00 39.75 2.90
817 823 2.656646 CACGGGTAGCTGTCAGCA 59.343 61.111 26.23 9.96 45.56 4.41
867 886 4.094442 GTGTGCCCTTTTATAGAGTTTCCG 59.906 45.833 0.00 0.00 0.00 4.30
950 973 1.290732 CTCTCTCCTCCCCTTCTTCCT 59.709 57.143 0.00 0.00 0.00 3.36
959 987 2.041405 CCCACCCTCTCTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
962 990 0.793617 TTCTTCCCACCCTCTCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
973 1001 3.435026 CCTGAACTGAAACCTTCTTCCCA 60.435 47.826 0.00 0.00 0.00 4.37
975 1003 2.554462 GCCTGAACTGAAACCTTCTTCC 59.446 50.000 0.00 0.00 0.00 3.46
1115 1145 5.108752 AGGAAGGAAAGAAGGAGGGAATTA 58.891 41.667 0.00 0.00 0.00 1.40
1116 1146 3.926020 AGGAAGGAAAGAAGGAGGGAATT 59.074 43.478 0.00 0.00 0.00 2.17
1117 1147 3.546840 AGGAAGGAAAGAAGGAGGGAAT 58.453 45.455 0.00 0.00 0.00 3.01
1128 1160 2.269940 TCCAGGAGGAAGGAAGGAAAG 58.730 52.381 0.00 0.00 42.23 2.62
1129 1161 2.433444 TCCAGGAGGAAGGAAGGAAA 57.567 50.000 0.00 0.00 42.23 3.13
1146 1178 3.914426 TCCAAGAAATCTAGCCAGTCC 57.086 47.619 0.00 0.00 0.00 3.85
1227 1299 3.730715 GCAAAACAGTTGTCTTTGATCCG 59.269 43.478 16.68 0.00 32.76 4.18
1256 1328 6.936900 AGTCATCATGTACTGCTGTTTTTAGT 59.063 34.615 0.09 0.00 0.00 2.24
1331 1407 7.659652 ATTCTCCGCTCAAGCTATTTATAAC 57.340 36.000 0.00 0.00 39.32 1.89
1339 1416 1.749063 TCGAATTCTCCGCTCAAGCTA 59.251 47.619 3.52 0.00 39.32 3.32
1382 1459 6.055588 CGTCAGATTAACCCATCCTAACAAT 58.944 40.000 0.00 0.00 0.00 2.71
1384 1461 4.712829 TCGTCAGATTAACCCATCCTAACA 59.287 41.667 0.00 0.00 0.00 2.41
1385 1462 5.272283 TCGTCAGATTAACCCATCCTAAC 57.728 43.478 0.00 0.00 0.00 2.34
1405 1482 2.095567 CCACTTCAGCAAGGAAACATCG 60.096 50.000 0.00 0.00 33.37 3.84
1465 1550 5.107453 CCACAGTGTTACTTCGATTCAGTTC 60.107 44.000 0.00 0.00 0.00 3.01
1473 1558 1.137282 TGTGCCACAGTGTTACTTCGA 59.863 47.619 0.00 0.00 0.00 3.71
1489 1577 1.338105 TGTCTCAGCCTACATGTGTGC 60.338 52.381 9.11 10.92 0.00 4.57
1503 1591 0.615331 GGTGAATCTGGCCTGTCTCA 59.385 55.000 3.32 8.24 0.00 3.27
1512 1600 1.209128 GATGCGTACGGTGAATCTGG 58.791 55.000 18.39 0.00 0.00 3.86
1526 1614 5.086058 AAAGTATTTTTACAGCGTGATGCG 58.914 37.500 0.00 0.00 42.81 4.73
1586 1674 4.634883 TCGACTCTCACACAGTTACTATCC 59.365 45.833 0.00 0.00 0.00 2.59
1596 1684 1.106944 TGGCTGTCGACTCTCACACA 61.107 55.000 17.92 3.58 0.00 3.72
1641 1729 3.181456 GGAGGAGATTCTGTCTGGATTGG 60.181 52.174 0.00 0.00 37.29 3.16
1672 1760 4.411013 AGAATTGACAAAAGGGAGGAAGG 58.589 43.478 0.00 0.00 0.00 3.46
1673 1761 6.410942 AAAGAATTGACAAAAGGGAGGAAG 57.589 37.500 0.00 0.00 0.00 3.46
1674 1762 6.611236 AGAAAAGAATTGACAAAAGGGAGGAA 59.389 34.615 0.00 0.00 0.00 3.36
1675 1763 6.136155 AGAAAAGAATTGACAAAAGGGAGGA 58.864 36.000 0.00 0.00 0.00 3.71
1719 1808 6.775708 ACAACATGGTGGTTATACAAGTACT 58.224 36.000 16.70 0.00 0.00 2.73
1723 1812 6.657541 ACCTAACAACATGGTGGTTATACAAG 59.342 38.462 16.70 0.88 32.38 3.16
1724 1813 6.431543 CACCTAACAACATGGTGGTTATACAA 59.568 38.462 16.70 0.00 45.29 2.41
1725 1814 5.941058 CACCTAACAACATGGTGGTTATACA 59.059 40.000 16.70 0.00 45.29 2.29
1907 2015 0.390735 GGAAGAAAGGAGCGGCGTTA 60.391 55.000 9.37 0.00 0.00 3.18
1923 2031 2.111999 GATCGATCCATGGGCCGGAA 62.112 60.000 14.76 8.17 35.77 4.30
1924 2032 2.526624 ATCGATCCATGGGCCGGA 60.527 61.111 20.89 2.40 36.84 5.14
1925 2033 2.046892 GATCGATCCATGGGCCGG 60.047 66.667 14.76 0.00 0.00 6.13
1933 2041 3.369787 GGCCATGTGATATGATCGATCCA 60.370 47.826 22.31 12.03 0.00 3.41
1935 2043 3.201290 GGGCCATGTGATATGATCGATC 58.799 50.000 18.72 18.72 0.00 3.69
1972 2086 1.019673 CTCACTGCCCATCAATTCCG 58.980 55.000 0.00 0.00 0.00 4.30
1973 2087 2.134789 ACTCACTGCCCATCAATTCC 57.865 50.000 0.00 0.00 0.00 3.01
1984 2102 0.108138 ATCGGCCACTAACTCACTGC 60.108 55.000 2.24 0.00 0.00 4.40
2036 2165 1.364901 GGCAATTGATGGGCCGATG 59.635 57.895 10.34 0.00 38.04 3.84
2042 2171 1.444119 CGTACGGGGCAATTGATGGG 61.444 60.000 10.34 0.00 0.00 4.00
2178 2314 4.400567 ACCACTGATAACGTAGTAACCTCC 59.599 45.833 0.00 0.00 45.00 4.30
2180 2316 4.768968 ACACCACTGATAACGTAGTAACCT 59.231 41.667 0.00 0.00 45.00 3.50
2182 2318 5.798934 CAGACACCACTGATAACGTAGTAAC 59.201 44.000 0.00 0.00 39.20 2.50
2183 2319 5.106038 CCAGACACCACTGATAACGTAGTAA 60.106 44.000 0.00 0.00 39.20 2.24
2193 2329 1.205655 CATCGACCAGACACCACTGAT 59.794 52.381 0.00 0.00 39.94 2.90
2270 2409 2.682893 GCGAATCATTCCACGCTCT 58.317 52.632 0.00 0.00 46.06 4.09
2290 2429 3.986970 CCAGATATGGCTACACGCA 57.013 52.632 0.00 0.00 41.67 5.24
2381 2525 0.035915 TTGGATGATTTGCGGACGGA 60.036 50.000 0.00 0.00 0.00 4.69
2388 2532 7.168637 CACTACTGCATTAATTGGATGATTTGC 59.831 37.037 7.57 0.00 0.00 3.68
2390 2534 8.297470 ACACTACTGCATTAATTGGATGATTT 57.703 30.769 7.57 0.00 0.00 2.17
2411 2555 1.891150 CTGTACACCCGGAGTAACACT 59.109 52.381 0.73 0.00 0.00 3.55
2415 2559 2.559668 CAAGACTGTACACCCGGAGTAA 59.440 50.000 0.73 0.00 0.00 2.24
2417 2561 0.966920 CAAGACTGTACACCCGGAGT 59.033 55.000 0.73 3.39 0.00 3.85
2487 2635 2.893489 GGCAAAAGATGAAAGGTGACCT 59.107 45.455 0.00 0.00 33.87 3.85
2593 2742 0.592247 CAGTTCAACACGCCTTGCAC 60.592 55.000 0.00 0.00 0.00 4.57
2596 2745 1.003545 CAGTCAGTTCAACACGCCTTG 60.004 52.381 0.00 0.00 0.00 3.61
2624 2773 4.039124 GGGGTGGTTGCCATGATTAATTAG 59.961 45.833 0.00 0.00 35.28 1.73
2625 2774 3.964031 GGGGTGGTTGCCATGATTAATTA 59.036 43.478 0.00 0.00 35.28 1.40
2626 2775 2.771372 GGGGTGGTTGCCATGATTAATT 59.229 45.455 0.00 0.00 35.28 1.40
2627 2776 2.292785 TGGGGTGGTTGCCATGATTAAT 60.293 45.455 0.00 0.00 35.28 1.40
2654 2809 4.758674 ACAGTGCTCACCATGATATAATGC 59.241 41.667 0.00 0.00 0.00 3.56
2688 2845 1.524849 GGTTGGCAGCTAGCTAGGC 60.525 63.158 18.86 22.30 44.79 3.93
2741 2902 5.523369 GTTGAAAAGTCCAACAGGAATGAG 58.477 41.667 0.00 0.00 42.40 2.90
2773 2934 3.363378 CGCAGACACTGAAATGTGAGTTC 60.363 47.826 2.81 0.00 40.12 3.01
2815 2982 8.031864 GCTATATACAGTCACCTAGAGTACGTA 58.968 40.741 0.00 0.00 0.00 3.57
2816 2983 6.873076 GCTATATACAGTCACCTAGAGTACGT 59.127 42.308 0.00 0.00 0.00 3.57
2817 2984 7.063662 CAGCTATATACAGTCACCTAGAGTACG 59.936 44.444 0.00 0.00 0.00 3.67
2818 2985 7.334921 CCAGCTATATACAGTCACCTAGAGTAC 59.665 44.444 0.00 0.00 0.00 2.73
2837 3004 4.686972 CATGCAGCGTATATACCAGCTAT 58.313 43.478 13.01 4.37 37.94 2.97
2881 3050 5.880332 GCCTATCTCAACATTCCTACACAAA 59.120 40.000 0.00 0.00 0.00 2.83
2892 3061 6.552725 TCATCTAGAGTTGCCTATCTCAACAT 59.447 38.462 0.00 0.28 44.50 2.71
2902 3071 3.944015 GCACATTTCATCTAGAGTTGCCT 59.056 43.478 0.00 0.00 0.00 4.75
2906 3075 5.645497 GGACTTGCACATTTCATCTAGAGTT 59.355 40.000 0.00 0.00 0.00 3.01
2908 3077 4.574013 GGGACTTGCACATTTCATCTAGAG 59.426 45.833 0.00 0.00 0.00 2.43
2929 3098 1.383799 ACATGACATGTGGGGTGGG 59.616 57.895 20.21 0.00 43.01 4.61
2950 3119 8.659527 TGGGAATCAATACTGTCACATATATGT 58.340 33.333 12.75 12.75 42.84 2.29
2951 3120 9.506018 TTGGGAATCAATACTGTCACATATATG 57.494 33.333 11.29 11.29 0.00 1.78
2953 3122 9.559732 CTTTGGGAATCAATACTGTCACATATA 57.440 33.333 0.00 0.00 34.98 0.86
2954 3123 8.274322 TCTTTGGGAATCAATACTGTCACATAT 58.726 33.333 0.00 0.00 34.98 1.78
2977 3803 8.520351 GGTAGCACCATGTTTATTTTTACTCTT 58.480 33.333 0.00 0.00 38.42 2.85
3003 3829 6.292865 CGGCATATAGTGTGGAAAATGTAGTG 60.293 42.308 0.00 0.00 0.00 2.74
3004 3830 5.758296 CGGCATATAGTGTGGAAAATGTAGT 59.242 40.000 0.00 0.00 0.00 2.73
3007 3833 4.523083 ACGGCATATAGTGTGGAAAATGT 58.477 39.130 0.00 0.00 0.00 2.71
3009 3835 6.524101 AAAACGGCATATAGTGTGGAAAAT 57.476 33.333 0.00 0.00 0.00 1.82
3078 3904 0.108138 GTAGTAGGTGGCAGTGGCAG 60.108 60.000 21.25 0.00 43.71 4.85
3079 3905 1.550130 GGTAGTAGGTGGCAGTGGCA 61.550 60.000 16.56 16.56 43.71 4.92
3080 3906 1.221021 GGTAGTAGGTGGCAGTGGC 59.779 63.158 10.30 10.30 40.13 5.01
3081 3907 0.249398 GTGGTAGTAGGTGGCAGTGG 59.751 60.000 0.00 0.00 0.00 4.00
3082 3908 1.267121 AGTGGTAGTAGGTGGCAGTG 58.733 55.000 0.00 0.00 0.00 3.66
3083 3909 2.830321 GTTAGTGGTAGTAGGTGGCAGT 59.170 50.000 0.00 0.00 0.00 4.40
3123 3949 1.204467 CAACTGGCCATAACCGCATTT 59.796 47.619 5.51 0.00 0.00 2.32
3127 3953 0.381801 CATCAACTGGCCATAACCGC 59.618 55.000 5.51 0.00 0.00 5.68
3160 3986 3.478509 GAGAATGGCAGCTCTCATGATT 58.521 45.455 19.32 0.00 38.38 2.57
3229 4055 0.616111 TGCAAGGGTGGTTTGGTTGT 60.616 50.000 0.00 0.00 0.00 3.32
3232 4058 0.398381 ACATGCAAGGGTGGTTTGGT 60.398 50.000 0.00 0.00 0.00 3.67
3233 4059 0.033781 CACATGCAAGGGTGGTTTGG 59.966 55.000 8.24 0.00 0.00 3.28
3237 4063 1.203038 TCATTCACATGCAAGGGTGGT 60.203 47.619 14.18 4.04 35.74 4.16
3255 4122 1.072505 GGCCTCCGAGTTTGGTTCA 59.927 57.895 0.00 0.00 0.00 3.18
3258 4125 2.198304 GATGGGCCTCCGAGTTTGGT 62.198 60.000 4.53 0.00 35.24 3.67
3488 4370 3.232213 TCGTTAGCAGTCTTGTGATCC 57.768 47.619 0.00 0.00 0.00 3.36
3583 4474 1.656095 CAAGATCTCAAGACCGTTCGC 59.344 52.381 0.00 0.00 0.00 4.70
3596 4487 0.461693 GCCGCTGAGAAGCAAGATCT 60.462 55.000 0.00 0.00 34.41 2.75
3598 4489 0.321919 TTGCCGCTGAGAAGCAAGAT 60.322 50.000 5.60 0.00 41.35 2.40
3607 4498 1.732259 ACGAATTAGTTTGCCGCTGAG 59.268 47.619 0.00 0.00 0.00 3.35
3613 4511 4.931002 TGGTACAGTACGAATTAGTTTGCC 59.069 41.667 4.58 0.00 0.00 4.52
3624 4522 7.337689 ACAGTATTCACTATTGGTACAGTACGA 59.662 37.037 4.58 0.00 33.92 3.43
3634 4534 5.359194 ACCCTGACAGTATTCACTATTGG 57.641 43.478 0.93 0.00 32.21 3.16
3646 4546 4.454504 CGCAACTTATTTAACCCTGACAGT 59.545 41.667 0.93 0.00 0.00 3.55
3672 4572 5.812642 CACAGTCAGTCAGTACTTCAAAGTT 59.187 40.000 0.00 0.00 40.37 2.66
3682 4584 1.269778 GCAGCACACAGTCAGTCAGTA 60.270 52.381 0.00 0.00 0.00 2.74
3684 4586 0.249784 AGCAGCACACAGTCAGTCAG 60.250 55.000 0.00 0.00 0.00 3.51
3685 4587 0.249615 GAGCAGCACACAGTCAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
3686 4588 1.280886 CGAGCAGCACACAGTCAGTC 61.281 60.000 0.00 0.00 0.00 3.51
3795 4697 1.455959 CGAGAAGGGGAGGTCCGAT 60.456 63.158 0.00 0.00 36.71 4.18
4041 4949 0.174845 CGACCACCATGATGTACGGT 59.825 55.000 0.00 0.00 0.00 4.83
4524 5432 0.038599 TGGGCGTGTAGGAGTACTGA 59.961 55.000 0.00 0.00 0.00 3.41
4560 5468 1.085091 TGAAGTAGAGCGAGTCGTCC 58.915 55.000 15.08 6.31 0.00 4.79
4705 5613 4.020617 CACCGCCTTGCTGAGGGA 62.021 66.667 8.49 0.00 46.40 4.20
4917 5825 4.615815 ATGATGGCGGCGCTCCTC 62.616 66.667 32.30 23.58 0.00 3.71
5130 6038 5.493133 AATAAAGCGGCGAATGATTTACA 57.507 34.783 12.98 0.00 0.00 2.41
5136 6044 6.535865 TCTTAAGTTAATAAAGCGGCGAATGA 59.464 34.615 12.98 0.00 0.00 2.57
5165 6077 2.036733 TGTTTCGGACGAGATTCCAACT 59.963 45.455 0.00 0.00 35.04 3.16
5245 6157 4.827789 TGATAGGTTAGCTAAGGTGGGAT 58.172 43.478 6.38 0.00 0.00 3.85
5291 6203 4.713824 TGAGTTTAGAGTATCGTGGGTG 57.286 45.455 0.00 0.00 42.67 4.61
5300 6212 9.658799 CTGAAGGAATTTGATGAGTTTAGAGTA 57.341 33.333 0.00 0.00 0.00 2.59
5433 6345 0.250338 GCGAGAAGAGTTGGGGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
5453 6365 1.203758 TGCAAGAAGGCGATCGAACTA 59.796 47.619 21.57 0.00 36.28 2.24
5456 6368 1.078709 CTTGCAAGAAGGCGATCGAA 58.921 50.000 22.31 0.00 36.28 3.71
5479 6391 0.753262 CCCGGAGATGGTGGAACTAG 59.247 60.000 0.73 0.00 36.74 2.57
5515 6427 2.089980 GAGCTGCCTCATGTCATGTTT 58.910 47.619 12.54 0.00 38.03 2.83
5549 6461 1.473965 GGTGTCATCCTGCGTGATCAT 60.474 52.381 0.00 0.00 0.00 2.45
5572 6484 1.997311 CACATGGGGAGAGGAGGCA 60.997 63.158 0.00 0.00 0.00 4.75
5596 6508 1.227147 AATACGGACGGTGCGATGG 60.227 57.895 28.43 0.00 34.49 3.51
5651 6569 0.758734 AACAGCCAAAAGAAAGGGGC 59.241 50.000 0.00 0.00 46.77 5.80
5669 6587 2.958355 CAGAAAGGAAGTGGAGCCAAAA 59.042 45.455 0.00 0.00 0.00 2.44
5677 6595 3.325135 AGAGGTACACAGAAAGGAAGTGG 59.675 47.826 0.00 0.00 37.58 4.00
5720 6638 7.305590 GCACATGAAATATCAATTACTGTTGCG 60.306 37.037 0.00 0.00 39.49 4.85
5798 6746 1.839424 AGGCTGTTATGGTTCAAGCC 58.161 50.000 3.80 3.80 40.90 4.35
5815 6763 2.507944 CCCCGGCTCATGAGAAGG 59.492 66.667 27.04 24.44 0.00 3.46
5831 6779 2.617274 GGAGTGGTTCGCACAAGCC 61.617 63.158 0.00 0.00 37.52 4.35
5858 6806 1.576421 CCAGAGCAAGTTGGCGAAC 59.424 57.895 2.99 2.99 39.27 3.95
5861 6809 0.962356 ATTCCCAGAGCAAGTTGGCG 60.962 55.000 4.75 0.00 39.27 5.69
5909 6857 2.168496 CTTGACTCGGAGTTGGGAGTA 58.832 52.381 12.67 0.00 43.23 2.59
5960 6908 0.759346 GCTACCATCGATTCTGGGGT 59.241 55.000 8.36 8.76 38.14 4.95
5984 6932 1.795286 GTTGCTTGTGGACGAGAAGAG 59.205 52.381 0.00 0.00 0.00 2.85
5990 6938 0.176910 TCTGTGTTGCTTGTGGACGA 59.823 50.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.