Multiple sequence alignment - TraesCS6B01G309500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G309500 chr6B 100.000 3871 0 0 953 4823 554658767 554654897 0.000000e+00 7149.0
1 TraesCS6B01G309500 chr6B 100.000 1781 0 0 6443 8223 554653277 554651497 0.000000e+00 3290.0
2 TraesCS6B01G309500 chr6B 93.323 1902 122 4 2832 4729 96542959 96544859 0.000000e+00 2804.0
3 TraesCS6B01G309500 chr6B 91.492 2057 118 19 2823 4823 689214712 689212657 0.000000e+00 2776.0
4 TraesCS6B01G309500 chr6B 94.536 1098 58 2 1734 2829 11791958 11790861 0.000000e+00 1694.0
5 TraesCS6B01G309500 chr6B 94.359 1099 59 3 1734 2829 685185506 685186604 0.000000e+00 1683.0
6 TraesCS6B01G309500 chr6B 100.000 840 0 0 5051 5890 554654669 554653830 0.000000e+00 1552.0
7 TraesCS6B01G309500 chr6B 96.860 828 25 1 5063 5890 96545051 96545877 0.000000e+00 1384.0
8 TraesCS6B01G309500 chr6B 100.000 654 0 0 1 654 554659719 554659066 0.000000e+00 1208.0
9 TraesCS6B01G309500 chr6B 88.456 745 86 0 984 1728 554165587 554164843 0.000000e+00 900.0
10 TraesCS6B01G309500 chr6B 86.079 783 102 4 953 1733 553050763 553051540 0.000000e+00 835.0
11 TraesCS6B01G309500 chr6B 92.975 484 33 1 6790 7272 554164840 554164357 0.000000e+00 704.0
12 TraesCS6B01G309500 chr6B 92.111 431 34 0 6790 7220 554123004 554122574 7.060000e-170 608.0
13 TraesCS6B01G309500 chr6B 91.268 355 22 7 6443 6790 96545939 96546291 7.470000e-130 475.0
14 TraesCS6B01G309500 chr6B 90.671 343 22 8 6456 6790 689211684 689211344 1.630000e-121 448.0
15 TraesCS6B01G309500 chr6B 93.023 43 3 0 7869 7911 116253466 116253508 6.890000e-06 63.9
16 TraesCS6B01G309500 chr6B 89.362 47 5 0 7826 7872 134337682 134337636 8.910000e-05 60.2
17 TraesCS6B01G309500 chr7B 94.148 1914 106 5 2822 4729 126189948 126188035 0.000000e+00 2909.0
18 TraesCS6B01G309500 chr7B 94.108 1918 101 9 2822 4729 126165019 126166934 0.000000e+00 2905.0
19 TraesCS6B01G309500 chr7B 93.521 1914 108 8 2832 4729 123408530 123406617 0.000000e+00 2833.0
20 TraesCS6B01G309500 chr7B 94.622 1097 57 2 1734 2829 720542192 720543287 0.000000e+00 1698.0
21 TraesCS6B01G309500 chr7B 91.297 1172 56 26 3681 4823 658138459 658137305 0.000000e+00 1557.0
22 TraesCS6B01G309500 chr7B 96.981 828 24 1 5063 5890 658137230 658136404 0.000000e+00 1389.0
23 TraesCS6B01G309500 chr7B 96.010 827 33 0 5063 5889 126187848 126187022 0.000000e+00 1345.0
24 TraesCS6B01G309500 chr7B 95.773 828 35 0 5063 5890 126204147 126204974 0.000000e+00 1336.0
25 TraesCS6B01G309500 chr7B 96.366 798 29 0 5093 5890 126167372 126168169 0.000000e+00 1314.0
26 TraesCS6B01G309500 chr7B 95.395 304 14 0 52 355 728122711 728122408 1.240000e-132 484.0
27 TraesCS6B01G309500 chr7B 95.066 304 15 0 52 355 731129225 731129528 5.770000e-131 479.0
28 TraesCS6B01G309500 chr7B 88.827 358 25 11 6445 6788 725315275 725314919 7.630000e-115 425.0
29 TraesCS6B01G309500 chr7B 89.362 47 5 0 7826 7872 485839467 485839513 8.910000e-05 60.2
30 TraesCS6B01G309500 chr7B 88.000 50 5 1 7824 7872 717954001 717953952 3.210000e-04 58.4
31 TraesCS6B01G309500 chr1B 93.727 1913 113 6 2822 4729 667838691 667836781 0.000000e+00 2861.0
32 TraesCS6B01G309500 chr1B 91.527 1912 128 10 2945 4823 420564494 420566404 0.000000e+00 2603.0
33 TraesCS6B01G309500 chr1B 95.086 1099 51 3 1733 2829 651927336 651928433 0.000000e+00 1727.0
34 TraesCS6B01G309500 chr1B 94.449 1099 59 2 1733 2829 364272992 364274090 0.000000e+00 1690.0
35 TraesCS6B01G309500 chr1B 94.704 812 32 4 5062 5872 642807651 642808452 0.000000e+00 1251.0
36 TraesCS6B01G309500 chr1B 92.500 40 3 0 7869 7908 29408969 29408930 3.210000e-04 58.4
37 TraesCS6B01G309500 chr4A 93.648 1905 112 8 2832 4729 643442448 643440546 0.000000e+00 2839.0
38 TraesCS6B01G309500 chr4A 95.411 828 37 1 5063 5890 643440341 643439515 0.000000e+00 1317.0
39 TraesCS6B01G309500 chr4A 95.284 827 28 4 5062 5888 602887800 602886985 0.000000e+00 1301.0
40 TraesCS6B01G309500 chr4A 91.416 932 51 5 3921 4823 734930833 734931764 0.000000e+00 1251.0
41 TraesCS6B01G309500 chr3B 93.176 1949 98 11 2908 4823 711734319 711736265 0.000000e+00 2830.0
42 TraesCS6B01G309500 chr3B 91.731 1935 109 13 2922 4822 505284525 505282608 0.000000e+00 2639.0
43 TraesCS6B01G309500 chr3B 95.095 1101 53 1 1730 2829 711732453 711733553 0.000000e+00 1733.0
44 TraesCS6B01G309500 chr3B 93.958 331 12 5 6468 6791 711756962 711757291 2.060000e-135 494.0
45 TraesCS6B01G309500 chr3B 93.878 49 3 0 7824 7872 104987782 104987734 3.180000e-09 75.0
46 TraesCS6B01G309500 chr3B 91.111 45 3 1 7605 7649 444134934 444134977 8.910000e-05 60.2
47 TraesCS6B01G309500 chr5B 91.970 2005 125 12 2852 4823 551771859 551769858 0.000000e+00 2778.0
48 TraesCS6B01G309500 chr5B 94.353 1098 61 1 1733 2829 702442778 702441681 0.000000e+00 1683.0
49 TraesCS6B01G309500 chr5B 95.395 304 14 0 52 355 8364309 8364006 1.240000e-132 484.0
50 TraesCS6B01G309500 chr5B 89.914 347 28 6 6445 6787 177851391 177851734 2.720000e-119 440.0
51 TraesCS6B01G309500 chr5B 89.796 49 5 0 7824 7872 55880689 55880641 6.890000e-06 63.9
52 TraesCS6B01G309500 chr7A 91.667 2028 109 30 2829 4823 338414 340414 0.000000e+00 2754.0
53 TraesCS6B01G309500 chr7A 88.858 359 26 8 6445 6798 210819326 210818977 5.900000e-116 429.0
54 TraesCS6B01G309500 chr7A 89.368 348 20 8 6448 6788 734124395 734124058 9.870000e-114 422.0
55 TraesCS6B01G309500 chr7A 93.023 43 2 1 7607 7649 170887339 170887298 2.480000e-05 62.1
56 TraesCS6B01G309500 chr2B 93.728 1690 75 12 3164 4823 108554964 108556652 0.000000e+00 2505.0
57 TraesCS6B01G309500 chr2B 95.173 1098 52 1 1733 2829 246081028 246079931 0.000000e+00 1733.0
58 TraesCS6B01G309500 chr2B 94.268 1099 61 2 1733 2829 788462652 788461554 0.000000e+00 1679.0
59 TraesCS6B01G309500 chr2B 95.410 305 14 0 51 355 142654523 142654827 3.450000e-133 486.0
60 TraesCS6B01G309500 chr2B 92.638 326 19 4 38 359 111361647 111361971 1.620000e-126 464.0
61 TraesCS6B01G309500 chr2B 91.040 346 20 5 6452 6787 108557825 108558169 2.710000e-124 457.0
62 TraesCS6B01G309500 chr2B 89.796 343 25 6 6455 6788 788457703 788457362 1.640000e-116 431.0
63 TraesCS6B01G309500 chr2B 93.023 43 2 1 7607 7649 450263382 450263423 2.480000e-05 62.1
64 TraesCS6B01G309500 chr2B 89.362 47 5 0 7826 7872 526413841 526413795 8.910000e-05 60.2
65 TraesCS6B01G309500 chr1D 89.269 1752 152 15 2946 4666 107506929 107505183 0.000000e+00 2161.0
66 TraesCS6B01G309500 chr1D 93.023 43 2 1 7607 7649 443547068 443547027 2.480000e-05 62.1
67 TraesCS6B01G309500 chr1D 94.872 39 0 2 7869 7906 84711225 84711262 8.910000e-05 60.2
68 TraesCS6B01G309500 chr1D 92.857 42 2 1 7608 7649 391735353 391735393 8.910000e-05 60.2
69 TraesCS6B01G309500 chr6D 95.884 826 25 2 6788 7610 368740282 368739463 0.000000e+00 1328.0
70 TraesCS6B01G309500 chr6D 97.071 751 22 0 983 1733 368741028 368740278 0.000000e+00 1266.0
71 TraesCS6B01G309500 chr6D 88.701 770 78 1 959 1728 367875909 367876669 0.000000e+00 931.0
72 TraesCS6B01G309500 chr6D 88.102 748 89 0 984 1731 367864905 367865652 0.000000e+00 889.0
73 TraesCS6B01G309500 chr6D 87.517 745 93 0 987 1731 368372233 368371489 0.000000e+00 861.0
74 TraesCS6B01G309500 chr6D 93.096 478 32 1 6796 7272 367865658 367866135 0.000000e+00 699.0
75 TraesCS6B01G309500 chr6D 92.361 432 33 0 6790 7221 367876672 367877103 4.220000e-172 616.0
76 TraesCS6B01G309500 chr6D 90.126 476 40 2 7755 8223 368738312 368737837 5.460000e-171 612.0
77 TraesCS6B01G309500 chr6D 90.090 444 44 0 6792 7235 368371487 368371044 1.990000e-160 577.0
78 TraesCS6B01G309500 chr6D 92.641 231 15 1 381 609 368741372 368741142 1.710000e-86 331.0
79 TraesCS6B01G309500 chr6D 96.460 113 3 1 7644 7756 368739047 368738936 1.410000e-42 185.0
80 TraesCS6B01G309500 chr6A 96.619 769 26 0 6788 7556 509561548 509560780 0.000000e+00 1277.0
81 TraesCS6B01G309500 chr6A 95.680 787 28 2 953 1733 509562330 509561544 0.000000e+00 1260.0
82 TraesCS6B01G309500 chr6A 89.396 745 79 0 984 1728 508293989 508294733 0.000000e+00 939.0
83 TraesCS6B01G309500 chr6A 87.532 770 87 1 959 1728 508333645 508334405 0.000000e+00 881.0
84 TraesCS6B01G309500 chr6A 85.414 761 91 8 987 1731 509285785 509285029 0.000000e+00 773.0
85 TraesCS6B01G309500 chr6A 93.305 478 31 1 6796 7272 508294742 508295219 0.000000e+00 704.0
86 TraesCS6B01G309500 chr6A 92.361 432 33 0 6790 7221 508334408 508334839 4.220000e-172 616.0
87 TraesCS6B01G309500 chr6A 89.852 473 41 4 7754 8223 509559558 509559090 1.180000e-167 601.0
88 TraesCS6B01G309500 chr6A 94.093 237 11 3 371 604 509562565 509562329 2.820000e-94 357.0
89 TraesCS6B01G309500 chr6A 99.115 113 1 0 7644 7756 509560283 509560171 3.890000e-48 204.0
90 TraesCS6B01G309500 chr6A 92.500 40 3 0 7869 7908 428746 428785 3.210000e-04 58.4
91 TraesCS6B01G309500 chr4B 94.217 830 33 6 5062 5890 40528506 40527691 0.000000e+00 1253.0
92 TraesCS6B01G309500 chr4B 87.755 49 6 0 7824 7872 8217224 8217176 3.210000e-04 58.4
93 TraesCS6B01G309500 chr2D 95.130 308 13 2 48 355 632796367 632796062 1.240000e-132 484.0
94 TraesCS6B01G309500 chr2A 95.395 304 14 0 52 355 434579961 434580264 1.240000e-132 484.0
95 TraesCS6B01G309500 chr2A 95.066 304 15 0 52 355 743327792 743327489 5.770000e-131 479.0
96 TraesCS6B01G309500 chr2A 92.857 42 3 0 7869 7910 187954954 187954995 2.480000e-05 62.1
97 TraesCS6B01G309500 chr7D 95.066 304 15 0 52 355 82851133 82851436 5.770000e-131 479.0
98 TraesCS6B01G309500 chr5A 82.448 433 74 2 953 1384 337891142 337890711 2.170000e-100 377.0
99 TraesCS6B01G309500 chr5A 93.023 43 2 1 7607 7649 97280828 97280787 2.480000e-05 62.1
100 TraesCS6B01G309500 chr1A 82.437 279 46 1 2923 3198 59562983 59562705 2.970000e-59 241.0
101 TraesCS6B01G309500 chr1A 93.182 44 2 1 7606 7649 266520641 266520599 6.890000e-06 63.9
102 TraesCS6B01G309500 chr1A 92.857 42 2 1 7608 7649 370098056 370098096 8.910000e-05 60.2
103 TraesCS6B01G309500 chr1A 92.857 42 2 1 7608 7649 386384701 386384741 8.910000e-05 60.2
104 TraesCS6B01G309500 chr1A 94.595 37 2 0 7872 7908 516589806 516589842 3.210000e-04 58.4
105 TraesCS6B01G309500 chr3D 79.518 166 31 1 2911 3076 56705294 56705132 1.880000e-21 115.0
106 TraesCS6B01G309500 chr4D 91.304 46 3 1 7869 7914 418584423 418584467 2.480000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G309500 chr6B 554651497 554659719 8222 True 3299.750000 7149 100.0000 1 8223 4 chr6B.!!$R5 8222
1 TraesCS6B01G309500 chr6B 11790861 11791958 1097 True 1694.000000 1694 94.5360 1734 2829 1 chr6B.!!$R1 1095
2 TraesCS6B01G309500 chr6B 685185506 685186604 1098 False 1683.000000 1683 94.3590 1734 2829 1 chr6B.!!$F3 1095
3 TraesCS6B01G309500 chr6B 689211344 689214712 3368 True 1612.000000 2776 91.0815 2823 6790 2 chr6B.!!$R6 3967
4 TraesCS6B01G309500 chr6B 96542959 96546291 3332 False 1554.333333 2804 93.8170 2832 6790 3 chr6B.!!$F4 3958
5 TraesCS6B01G309500 chr6B 553050763 553051540 777 False 835.000000 835 86.0790 953 1733 1 chr6B.!!$F2 780
6 TraesCS6B01G309500 chr6B 554164357 554165587 1230 True 802.000000 900 90.7155 984 7272 2 chr6B.!!$R4 6288
7 TraesCS6B01G309500 chr7B 123406617 123408530 1913 True 2833.000000 2833 93.5210 2832 4729 1 chr7B.!!$R1 1897
8 TraesCS6B01G309500 chr7B 126187022 126189948 2926 True 2127.000000 2909 95.0790 2822 5889 2 chr7B.!!$R5 3067
9 TraesCS6B01G309500 chr7B 126165019 126168169 3150 False 2109.500000 2905 95.2370 2822 5890 2 chr7B.!!$F5 3068
10 TraesCS6B01G309500 chr7B 720542192 720543287 1095 False 1698.000000 1698 94.6220 1734 2829 1 chr7B.!!$F3 1095
11 TraesCS6B01G309500 chr7B 658136404 658138459 2055 True 1473.000000 1557 94.1390 3681 5890 2 chr7B.!!$R6 2209
12 TraesCS6B01G309500 chr7B 126204147 126204974 827 False 1336.000000 1336 95.7730 5063 5890 1 chr7B.!!$F1 827
13 TraesCS6B01G309500 chr1B 667836781 667838691 1910 True 2861.000000 2861 93.7270 2822 4729 1 chr1B.!!$R2 1907
14 TraesCS6B01G309500 chr1B 420564494 420566404 1910 False 2603.000000 2603 91.5270 2945 4823 1 chr1B.!!$F2 1878
15 TraesCS6B01G309500 chr1B 651927336 651928433 1097 False 1727.000000 1727 95.0860 1733 2829 1 chr1B.!!$F4 1096
16 TraesCS6B01G309500 chr1B 364272992 364274090 1098 False 1690.000000 1690 94.4490 1733 2829 1 chr1B.!!$F1 1096
17 TraesCS6B01G309500 chr1B 642807651 642808452 801 False 1251.000000 1251 94.7040 5062 5872 1 chr1B.!!$F3 810
18 TraesCS6B01G309500 chr4A 643439515 643442448 2933 True 2078.000000 2839 94.5295 2832 5890 2 chr4A.!!$R2 3058
19 TraesCS6B01G309500 chr4A 602886985 602887800 815 True 1301.000000 1301 95.2840 5062 5888 1 chr4A.!!$R1 826
20 TraesCS6B01G309500 chr4A 734930833 734931764 931 False 1251.000000 1251 91.4160 3921 4823 1 chr4A.!!$F1 902
21 TraesCS6B01G309500 chr3B 505282608 505284525 1917 True 2639.000000 2639 91.7310 2922 4822 1 chr3B.!!$R2 1900
22 TraesCS6B01G309500 chr3B 711732453 711736265 3812 False 2281.500000 2830 94.1355 1730 4823 2 chr3B.!!$F3 3093
23 TraesCS6B01G309500 chr5B 551769858 551771859 2001 True 2778.000000 2778 91.9700 2852 4823 1 chr5B.!!$R3 1971
24 TraesCS6B01G309500 chr5B 702441681 702442778 1097 True 1683.000000 1683 94.3530 1733 2829 1 chr5B.!!$R4 1096
25 TraesCS6B01G309500 chr7A 338414 340414 2000 False 2754.000000 2754 91.6670 2829 4823 1 chr7A.!!$F1 1994
26 TraesCS6B01G309500 chr2B 246079931 246081028 1097 True 1733.000000 1733 95.1730 1733 2829 1 chr2B.!!$R1 1096
27 TraesCS6B01G309500 chr2B 108554964 108558169 3205 False 1481.000000 2505 92.3840 3164 6787 2 chr2B.!!$F4 3623
28 TraesCS6B01G309500 chr2B 788457362 788462652 5290 True 1055.000000 1679 92.0320 1733 6788 2 chr2B.!!$R3 5055
29 TraesCS6B01G309500 chr1D 107505183 107506929 1746 True 2161.000000 2161 89.2690 2946 4666 1 chr1D.!!$R1 1720
30 TraesCS6B01G309500 chr6D 367864905 367866135 1230 False 794.000000 889 90.5990 984 7272 2 chr6D.!!$F1 6288
31 TraesCS6B01G309500 chr6D 367875909 367877103 1194 False 773.500000 931 90.5310 959 7221 2 chr6D.!!$F2 6262
32 TraesCS6B01G309500 chr6D 368737837 368741372 3535 True 744.400000 1328 94.4364 381 8223 5 chr6D.!!$R2 7842
33 TraesCS6B01G309500 chr6D 368371044 368372233 1189 True 719.000000 861 88.8035 987 7235 2 chr6D.!!$R1 6248
34 TraesCS6B01G309500 chr6A 508293989 508295219 1230 False 821.500000 939 91.3505 984 7272 2 chr6A.!!$F2 6288
35 TraesCS6B01G309500 chr6A 509285029 509285785 756 True 773.000000 773 85.4140 987 1731 1 chr6A.!!$R1 744
36 TraesCS6B01G309500 chr6A 508333645 508334839 1194 False 748.500000 881 89.9465 959 7221 2 chr6A.!!$F3 6262
37 TraesCS6B01G309500 chr6A 509559090 509562565 3475 True 739.800000 1277 95.0718 371 8223 5 chr6A.!!$R2 7852
38 TraesCS6B01G309500 chr4B 40527691 40528506 815 True 1253.000000 1253 94.2170 5062 5890 1 chr4B.!!$R2 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.038159 ACCTTCGAAAGACTGAGCCG 60.038 55.000 0.00 0.0 41.84 5.52 F
228 229 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.0 44.68 3.71 F
1938 1991 0.512952 CGCAAAGACTGGAACGGAAG 59.487 55.000 0.00 0.0 38.67 3.46 F
2624 2678 0.110486 ACCTTGGCCTTCGTGTCAAT 59.890 50.000 3.32 0.0 0.00 2.57 F
3175 4196 1.159285 TCGCCTAAAGTCGTCGAAGA 58.841 50.000 0.00 0.0 0.00 2.87 F
3325 4346 1.196104 TTGGCGTTAGGTGGGTAGCT 61.196 55.000 0.00 0.0 38.41 3.32 F
4045 5071 1.653151 GAAGTATGTGGCGAAGGGTC 58.347 55.000 0.00 0.0 0.00 4.46 F
5378 6509 2.426381 TGAGGCGCATGCAAAAATCATA 59.574 40.909 19.57 0.0 45.35 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1606 0.737367 CACGACGATGAGCACCACAT 60.737 55.000 0.00 0.0 0.00 3.21 R
1956 2009 1.191489 TGATGACGAAGGGACTGCCA 61.191 55.000 0.00 0.0 40.86 4.92 R
3679 4704 0.468226 AGGAGTTTGACAACCTCGCA 59.532 50.000 6.65 0.0 32.70 5.10 R
4115 5141 0.040058 TCCGCCACCTCCACTACTTA 59.960 55.000 0.00 0.0 0.00 2.24 R
4508 5535 0.246635 GCTCTCCACAACGCTCCTTA 59.753 55.000 0.00 0.0 0.00 2.69 R
4708 5738 0.249911 CCTACTCCATGCCGGTTAGC 60.250 60.000 1.90 0.0 35.57 3.09 R
5393 6524 0.039527 GTTTTACGGGTGCCAGCAAG 60.040 55.000 0.00 0.0 0.00 4.01 R
7307 8874 6.959639 AAGTAAAGATGGAACTGAGCAAAA 57.040 33.333 0.00 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.752412 ATGTGAAACGCATCTGATGTG 57.248 42.857 25.22 25.22 45.88 3.21
22 23 1.805943 TGTGAAACGCATCTGATGTGG 59.194 47.619 28.77 18.63 44.76 4.17
23 24 1.131126 GTGAAACGCATCTGATGTGGG 59.869 52.381 28.77 16.57 44.76 4.61
24 25 0.099436 GAAACGCATCTGATGTGGGC 59.901 55.000 28.77 16.61 44.76 5.36
25 26 0.322816 AAACGCATCTGATGTGGGCT 60.323 50.000 28.77 14.18 44.76 5.19
26 27 0.541392 AACGCATCTGATGTGGGCTA 59.459 50.000 28.77 0.00 44.76 3.93
27 28 0.105593 ACGCATCTGATGTGGGCTAG 59.894 55.000 28.77 11.21 44.76 3.42
28 29 1.226686 CGCATCTGATGTGGGCTAGC 61.227 60.000 20.66 6.04 37.14 3.42
29 30 0.108207 GCATCTGATGTGGGCTAGCT 59.892 55.000 15.72 0.00 0.00 3.32
30 31 1.476471 GCATCTGATGTGGGCTAGCTT 60.476 52.381 15.72 0.00 0.00 3.74
31 32 2.928334 CATCTGATGTGGGCTAGCTTT 58.072 47.619 15.72 0.00 0.00 3.51
32 33 3.745480 GCATCTGATGTGGGCTAGCTTTA 60.745 47.826 15.72 0.00 0.00 1.85
33 34 3.827008 TCTGATGTGGGCTAGCTTTAG 57.173 47.619 15.72 4.29 0.00 1.85
34 35 2.158900 TCTGATGTGGGCTAGCTTTAGC 60.159 50.000 15.72 0.00 42.12 3.09
76 77 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
77 78 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
78 79 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
79 80 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
80 81 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
81 82 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
82 83 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
83 84 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
84 85 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
85 86 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
86 87 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
87 88 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
88 89 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
89 90 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
90 91 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
91 92 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
92 93 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
99 100 3.954030 CGCTCATATACACGCACATAC 57.046 47.619 0.00 0.00 0.00 2.39
100 101 3.305110 CGCTCATATACACGCACATACA 58.695 45.455 0.00 0.00 0.00 2.29
101 102 3.119628 CGCTCATATACACGCACATACAC 59.880 47.826 0.00 0.00 0.00 2.90
102 103 4.299155 GCTCATATACACGCACATACACT 58.701 43.478 0.00 0.00 0.00 3.55
103 104 4.383052 GCTCATATACACGCACATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
104 105 5.508200 TCATATACACGCACATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
105 106 5.278604 TCATATACACGCACATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
106 107 2.357327 TACACGCACATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
107 108 0.320421 ACACGCACATACACTCACCC 60.320 55.000 0.00 0.00 0.00 4.61
108 109 1.019278 CACGCACATACACTCACCCC 61.019 60.000 0.00 0.00 0.00 4.95
109 110 1.192146 ACGCACATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
110 111 0.821517 CGCACATACACTCACCCCTA 59.178 55.000 0.00 0.00 0.00 3.53
111 112 1.412710 CGCACATACACTCACCCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
112 113 2.803133 CGCACATACACTCACCCCTATG 60.803 54.545 0.00 0.00 0.00 2.23
113 114 2.434336 GCACATACACTCACCCCTATGA 59.566 50.000 0.00 0.00 0.00 2.15
114 115 3.118408 GCACATACACTCACCCCTATGAA 60.118 47.826 0.00 0.00 0.00 2.57
115 116 4.442706 CACATACACTCACCCCTATGAAC 58.557 47.826 0.00 0.00 0.00 3.18
116 117 3.132289 ACATACACTCACCCCTATGAACG 59.868 47.826 0.00 0.00 0.00 3.95
117 118 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
118 119 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
119 120 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
120 121 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
121 122 0.908910 TCACCCCTATGAACGCACAT 59.091 50.000 0.94 0.94 0.00 3.21
122 123 2.102420 CTCACCCCTATGAACGCACATA 59.898 50.000 2.94 2.94 0.00 2.29
123 124 2.159014 TCACCCCTATGAACGCACATAC 60.159 50.000 0.00 0.00 0.00 2.39
124 125 1.202486 ACCCCTATGAACGCACATACG 60.202 52.381 0.00 0.00 39.50 3.06
125 126 0.859232 CCCTATGAACGCACATACGC 59.141 55.000 0.00 0.00 36.19 4.42
126 127 1.566404 CCTATGAACGCACATACGCA 58.434 50.000 0.00 0.00 36.19 5.24
127 128 1.257936 CCTATGAACGCACATACGCAC 59.742 52.381 0.00 0.00 36.19 5.34
128 129 1.923864 CTATGAACGCACATACGCACA 59.076 47.619 0.00 0.00 36.19 4.57
129 130 0.442310 ATGAACGCACATACGCACAC 59.558 50.000 0.00 0.00 36.19 3.82
130 131 1.131826 GAACGCACATACGCACACC 59.868 57.895 0.00 0.00 36.19 4.16
131 132 2.235536 GAACGCACATACGCACACCC 62.236 60.000 0.00 0.00 36.19 4.61
132 133 2.434185 CGCACATACGCACACCCT 60.434 61.111 0.00 0.00 0.00 4.34
133 134 1.153726 CGCACATACGCACACCCTA 60.154 57.895 0.00 0.00 0.00 3.53
134 135 1.418342 CGCACATACGCACACCCTAC 61.418 60.000 0.00 0.00 0.00 3.18
135 136 1.087771 GCACATACGCACACCCTACC 61.088 60.000 0.00 0.00 0.00 3.18
136 137 0.461339 CACATACGCACACCCTACCC 60.461 60.000 0.00 0.00 0.00 3.69
137 138 1.145377 CATACGCACACCCTACCCC 59.855 63.158 0.00 0.00 0.00 4.95
138 139 1.002533 ATACGCACACCCTACCCCT 59.997 57.895 0.00 0.00 0.00 4.79
139 140 0.262580 ATACGCACACCCTACCCCTA 59.737 55.000 0.00 0.00 0.00 3.53
140 141 0.262580 TACGCACACCCTACCCCTAT 59.737 55.000 0.00 0.00 0.00 2.57
141 142 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
142 143 1.837090 GCACACCCTACCCCTATGG 59.163 63.158 0.00 0.00 41.37 2.74
160 161 3.606886 GGCACCTTCGAAAGACTGA 57.393 52.632 0.00 0.00 41.84 3.41
161 162 1.433534 GGCACCTTCGAAAGACTGAG 58.566 55.000 0.00 0.00 41.84 3.35
162 163 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
163 164 1.433534 CACCTTCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 41.84 4.70
164 165 0.038159 ACCTTCGAAAGACTGAGCCG 60.038 55.000 0.00 0.00 41.84 5.52
165 166 0.737715 CCTTCGAAAGACTGAGCCGG 60.738 60.000 0.00 0.00 41.84 6.13
166 167 1.355066 CTTCGAAAGACTGAGCCGGC 61.355 60.000 21.89 21.89 41.84 6.13
167 168 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
168 169 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
169 170 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
170 171 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
171 172 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
172 173 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
173 174 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
174 175 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
175 176 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
176 177 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
177 178 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
178 179 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
179 180 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
180 181 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
181 182 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
182 183 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
183 184 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
184 185 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
185 186 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
186 187 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
187 188 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
188 189 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
189 190 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
190 191 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
191 192 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
192 193 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
193 194 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
194 195 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
195 196 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
196 197 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
197 198 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
198 199 5.375417 TGAGATTTACGAAGTCACCGTAA 57.625 39.130 0.00 0.00 46.58 3.18
201 202 1.967762 TTACGAAGTCACCGTAAGCG 58.032 50.000 0.00 0.00 44.40 4.68
202 203 0.454957 TACGAAGTCACCGTAAGCGC 60.455 55.000 0.00 0.00 43.93 5.92
203 204 2.442188 CGAAGTCACCGTAAGCGCC 61.442 63.158 2.29 0.00 36.67 6.53
204 205 1.080025 GAAGTCACCGTAAGCGCCT 60.080 57.895 2.29 0.00 36.67 5.52
205 206 1.077089 GAAGTCACCGTAAGCGCCTC 61.077 60.000 2.29 0.00 36.67 4.70
206 207 2.814183 AAGTCACCGTAAGCGCCTCG 62.814 60.000 2.29 6.64 36.67 4.63
207 208 3.367743 TCACCGTAAGCGCCTCGT 61.368 61.111 2.29 0.00 36.67 4.18
208 209 2.879462 CACCGTAAGCGCCTCGTC 60.879 66.667 2.29 0.00 36.67 4.20
209 210 4.471726 ACCGTAAGCGCCTCGTCG 62.472 66.667 2.29 2.19 36.67 5.12
210 211 4.471726 CCGTAAGCGCCTCGTCGT 62.472 66.667 2.29 0.00 36.67 4.34
211 212 2.943034 CGTAAGCGCCTCGTCGTC 60.943 66.667 2.29 0.00 0.00 4.20
212 213 2.943034 GTAAGCGCCTCGTCGTCG 60.943 66.667 2.29 0.00 38.55 5.12
213 214 3.120385 TAAGCGCCTCGTCGTCGA 61.120 61.111 2.29 4.42 44.12 4.20
214 215 3.372676 TAAGCGCCTCGTCGTCGAC 62.373 63.158 15.51 15.51 41.35 4.20
223 224 4.068302 GTCGTCGACGGGAACATC 57.932 61.111 35.05 14.32 40.29 3.06
224 225 1.505353 GTCGTCGACGGGAACATCT 59.495 57.895 35.05 0.00 40.29 2.90
225 226 0.522915 GTCGTCGACGGGAACATCTC 60.523 60.000 35.05 12.17 40.29 2.75
226 227 1.226603 CGTCGACGGGAACATCTCC 60.227 63.158 29.70 0.00 44.54 3.71
227 228 1.654954 CGTCGACGGGAACATCTCCT 61.655 60.000 29.70 0.00 44.68 3.69
228 229 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
229 230 1.035932 TCGACGGGAACATCTCCTCC 61.036 60.000 0.00 0.00 44.68 4.30
230 231 1.823976 GACGGGAACATCTCCTCCC 59.176 63.158 0.00 0.00 46.97 4.30
235 236 1.573108 GGAACATCTCCTCCCACTGA 58.427 55.000 0.00 0.00 41.61 3.41
236 237 1.909302 GGAACATCTCCTCCCACTGAA 59.091 52.381 0.00 0.00 41.61 3.02
237 238 2.305927 GGAACATCTCCTCCCACTGAAA 59.694 50.000 0.00 0.00 41.61 2.69
238 239 3.604582 GAACATCTCCTCCCACTGAAAG 58.395 50.000 0.00 0.00 42.29 2.62
239 240 1.280421 ACATCTCCTCCCACTGAAAGC 59.720 52.381 0.00 0.00 37.60 3.51
240 241 0.539051 ATCTCCTCCCACTGAAAGCG 59.461 55.000 0.00 0.00 37.60 4.68
241 242 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
242 243 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
243 244 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
244 245 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
245 246 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
256 257 3.409856 CGCATCGCCGGAAATTCT 58.590 55.556 5.05 0.00 0.00 2.40
257 258 1.010797 CGCATCGCCGGAAATTCTG 60.011 57.895 5.05 0.00 0.00 3.02
258 259 1.428370 CGCATCGCCGGAAATTCTGA 61.428 55.000 5.05 0.00 0.00 3.27
259 260 0.732571 GCATCGCCGGAAATTCTGAA 59.267 50.000 5.05 0.00 0.00 3.02
260 261 1.132262 GCATCGCCGGAAATTCTGAAA 59.868 47.619 5.05 0.00 0.00 2.69
261 262 2.223572 GCATCGCCGGAAATTCTGAAAT 60.224 45.455 5.05 0.00 0.00 2.17
262 263 3.003275 GCATCGCCGGAAATTCTGAAATA 59.997 43.478 5.05 0.00 0.00 1.40
263 264 4.497340 GCATCGCCGGAAATTCTGAAATAA 60.497 41.667 5.05 0.00 0.00 1.40
264 265 5.577835 CATCGCCGGAAATTCTGAAATAAA 58.422 37.500 5.05 0.00 0.00 1.40
265 266 5.828299 TCGCCGGAAATTCTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
266 267 5.816919 TCGCCGGAAATTCTGAAATAAATC 58.183 37.500 5.05 0.00 0.00 2.17
267 268 4.976116 CGCCGGAAATTCTGAAATAAATCC 59.024 41.667 5.05 0.00 0.00 3.01
268 269 5.449862 CGCCGGAAATTCTGAAATAAATCCA 60.450 40.000 5.05 0.00 0.00 3.41
269 270 5.979517 GCCGGAAATTCTGAAATAAATCCAG 59.020 40.000 5.05 0.00 0.00 3.86
270 271 6.507023 CCGGAAATTCTGAAATAAATCCAGG 58.493 40.000 2.89 1.89 0.00 4.45
271 272 6.321181 CCGGAAATTCTGAAATAAATCCAGGA 59.679 38.462 2.89 0.00 0.00 3.86
272 273 7.147915 CCGGAAATTCTGAAATAAATCCAGGAA 60.148 37.037 2.89 0.00 0.00 3.36
273 274 8.416329 CGGAAATTCTGAAATAAATCCAGGAAT 58.584 33.333 0.00 0.00 0.00 3.01
280 281 8.352201 TCTGAAATAAATCCAGGAATAAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
281 282 8.231692 TGAAATAAATCCAGGAATAAATGCGA 57.768 30.769 0.00 0.00 0.00 5.10
282 283 8.352201 TGAAATAAATCCAGGAATAAATGCGAG 58.648 33.333 0.00 0.00 0.00 5.03
283 284 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
284 285 2.708216 TCCAGGAATAAATGCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
285 286 2.288666 TCCAGGAATAAATGCGAGCAC 58.711 47.619 0.00 0.00 0.00 4.40
286 287 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
287 288 2.016318 CAGGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
288 289 2.423185 CAGGAATAAATGCGAGCACCAA 59.577 45.455 0.00 0.00 0.00 3.67
289 290 2.684881 AGGAATAAATGCGAGCACCAAG 59.315 45.455 0.00 0.00 0.00 3.61
290 291 2.682856 GGAATAAATGCGAGCACCAAGA 59.317 45.455 0.00 0.00 0.00 3.02
291 292 3.316308 GGAATAAATGCGAGCACCAAGAT 59.684 43.478 0.00 0.00 0.00 2.40
292 293 4.202050 GGAATAAATGCGAGCACCAAGATT 60.202 41.667 0.00 0.00 0.00 2.40
293 294 4.989279 ATAAATGCGAGCACCAAGATTT 57.011 36.364 0.00 0.00 0.00 2.17
294 295 2.642139 AATGCGAGCACCAAGATTTG 57.358 45.000 0.00 0.00 0.00 2.32
295 296 1.825090 ATGCGAGCACCAAGATTTGA 58.175 45.000 0.00 0.00 0.00 2.69
296 297 1.603456 TGCGAGCACCAAGATTTGAA 58.397 45.000 0.00 0.00 0.00 2.69
297 298 1.266718 TGCGAGCACCAAGATTTGAAC 59.733 47.619 0.00 0.00 0.00 3.18
298 299 1.401539 GCGAGCACCAAGATTTGAACC 60.402 52.381 0.00 0.00 0.00 3.62
299 300 1.200020 CGAGCACCAAGATTTGAACCC 59.800 52.381 0.00 0.00 0.00 4.11
300 301 2.519013 GAGCACCAAGATTTGAACCCT 58.481 47.619 0.00 0.00 0.00 4.34
301 302 2.229784 GAGCACCAAGATTTGAACCCTG 59.770 50.000 0.00 0.00 0.00 4.45
302 303 1.273327 GCACCAAGATTTGAACCCTGG 59.727 52.381 0.00 0.00 0.00 4.45
303 304 2.597455 CACCAAGATTTGAACCCTGGT 58.403 47.619 0.00 0.00 0.00 4.00
304 305 2.297033 CACCAAGATTTGAACCCTGGTG 59.703 50.000 4.77 4.77 39.38 4.17
305 306 1.895131 CCAAGATTTGAACCCTGGTGG 59.105 52.381 0.00 0.00 41.37 4.61
315 316 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
316 317 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
332 333 3.644335 GGATACCACAGTCCCTCTAACT 58.356 50.000 0.00 0.00 0.00 2.24
333 334 4.801164 GGATACCACAGTCCCTCTAACTA 58.199 47.826 0.00 0.00 0.00 2.24
334 335 5.395611 GGATACCACAGTCCCTCTAACTAT 58.604 45.833 0.00 0.00 0.00 2.12
335 336 5.477637 GGATACCACAGTCCCTCTAACTATC 59.522 48.000 0.00 0.00 0.00 2.08
336 337 3.644335 ACCACAGTCCCTCTAACTATCC 58.356 50.000 0.00 0.00 0.00 2.59
337 338 3.012502 ACCACAGTCCCTCTAACTATCCA 59.987 47.826 0.00 0.00 0.00 3.41
338 339 4.030913 CCACAGTCCCTCTAACTATCCAA 58.969 47.826 0.00 0.00 0.00 3.53
339 340 4.141914 CCACAGTCCCTCTAACTATCCAAC 60.142 50.000 0.00 0.00 0.00 3.77
340 341 4.031611 ACAGTCCCTCTAACTATCCAACC 58.968 47.826 0.00 0.00 0.00 3.77
341 342 4.030913 CAGTCCCTCTAACTATCCAACCA 58.969 47.826 0.00 0.00 0.00 3.67
342 343 4.031611 AGTCCCTCTAACTATCCAACCAC 58.968 47.826 0.00 0.00 0.00 4.16
343 344 3.773119 GTCCCTCTAACTATCCAACCACA 59.227 47.826 0.00 0.00 0.00 4.17
344 345 4.030913 TCCCTCTAACTATCCAACCACAG 58.969 47.826 0.00 0.00 0.00 3.66
345 346 3.134804 CCCTCTAACTATCCAACCACAGG 59.865 52.174 0.00 0.00 0.00 4.00
346 347 3.775316 CCTCTAACTATCCAACCACAGGT 59.225 47.826 0.00 0.00 37.65 4.00
356 357 2.113139 CCACAGGTTGGTTCGCCT 59.887 61.111 0.00 0.00 41.10 5.52
357 358 1.528309 CCACAGGTTGGTTCGCCTT 60.528 57.895 0.00 0.00 41.10 4.35
358 359 1.106944 CCACAGGTTGGTTCGCCTTT 61.107 55.000 0.00 0.00 41.10 3.11
359 360 1.600023 CACAGGTTGGTTCGCCTTTA 58.400 50.000 0.00 0.00 38.36 1.85
360 361 1.950909 CACAGGTTGGTTCGCCTTTAA 59.049 47.619 0.00 0.00 38.36 1.52
361 362 1.951602 ACAGGTTGGTTCGCCTTTAAC 59.048 47.619 0.00 0.00 38.36 2.01
362 363 1.268625 CAGGTTGGTTCGCCTTTAACC 59.731 52.381 0.00 0.00 45.53 2.85
369 370 4.834357 GGTTCGCCTTTAACCACTTTAA 57.166 40.909 0.00 0.00 44.83 1.52
370 371 5.381174 GGTTCGCCTTTAACCACTTTAAT 57.619 39.130 0.00 0.00 44.83 1.40
371 372 5.775686 GGTTCGCCTTTAACCACTTTAATT 58.224 37.500 0.00 0.00 44.83 1.40
372 373 6.912082 GGTTCGCCTTTAACCACTTTAATTA 58.088 36.000 0.00 0.00 44.83 1.40
373 374 7.369607 GGTTCGCCTTTAACCACTTTAATTAA 58.630 34.615 0.00 0.00 44.83 1.40
374 375 8.030692 GGTTCGCCTTTAACCACTTTAATTAAT 58.969 33.333 0.00 0.00 44.83 1.40
375 376 9.414295 GTTCGCCTTTAACCACTTTAATTAATT 57.586 29.630 5.89 5.89 29.47 1.40
376 377 9.628746 TTCGCCTTTAACCACTTTAATTAATTC 57.371 29.630 3.39 0.00 29.47 2.17
377 378 9.016438 TCGCCTTTAACCACTTTAATTAATTCT 57.984 29.630 3.39 0.00 29.47 2.40
378 379 9.634163 CGCCTTTAACCACTTTAATTAATTCTT 57.366 29.630 3.39 0.00 29.47 2.52
485 489 1.546589 TAGCCGGTCCCGTCAAACAT 61.547 55.000 1.90 0.00 37.81 2.71
612 616 1.506493 CGCAGCCTCATTCATACTCC 58.494 55.000 0.00 0.00 0.00 3.85
613 617 1.875576 CGCAGCCTCATTCATACTCCC 60.876 57.143 0.00 0.00 0.00 4.30
614 618 1.419387 GCAGCCTCATTCATACTCCCT 59.581 52.381 0.00 0.00 0.00 4.20
615 619 2.549778 GCAGCCTCATTCATACTCCCTC 60.550 54.545 0.00 0.00 0.00 4.30
616 620 2.038295 CAGCCTCATTCATACTCCCTCC 59.962 54.545 0.00 0.00 0.00 4.30
619 623 3.307339 GCCTCATTCATACTCCCTCCATC 60.307 52.174 0.00 0.00 0.00 3.51
620 624 3.262915 CCTCATTCATACTCCCTCCATCC 59.737 52.174 0.00 0.00 0.00 3.51
621 625 3.251484 TCATTCATACTCCCTCCATCCC 58.749 50.000 0.00 0.00 0.00 3.85
622 626 2.887454 TTCATACTCCCTCCATCCCA 57.113 50.000 0.00 0.00 0.00 4.37
623 627 3.367280 TTCATACTCCCTCCATCCCAT 57.633 47.619 0.00 0.00 0.00 4.00
624 628 4.502036 TTCATACTCCCTCCATCCCATA 57.498 45.455 0.00 0.00 0.00 2.74
1094 1131 2.185350 CTTCCAGCGCTCACCGAT 59.815 61.111 7.13 0.00 40.02 4.18
1356 1409 4.021925 GGCCACCACGCCTTCTCT 62.022 66.667 0.00 0.00 46.10 3.10
1503 1556 1.598685 GTTCGTCCCAAGGCCGAAA 60.599 57.895 0.55 0.00 41.64 3.46
1698 1751 2.700773 GGAGCGCGCCCAGATTTTT 61.701 57.895 30.33 5.17 0.00 1.94
1938 1991 0.512952 CGCAAAGACTGGAACGGAAG 59.487 55.000 0.00 0.00 38.67 3.46
1956 2009 3.510753 GGAAGTCCTCGAAGGTAGAAGTT 59.489 47.826 0.00 0.00 36.53 2.66
2036 2089 1.754803 CATACGTCCAAGAGCCACCTA 59.245 52.381 0.00 0.00 0.00 3.08
2040 2093 1.267121 GTCCAAGAGCCACCTACTCA 58.733 55.000 0.00 0.00 36.58 3.41
2041 2094 1.834263 GTCCAAGAGCCACCTACTCAT 59.166 52.381 0.00 0.00 36.58 2.90
2091 2144 0.387929 TAGTCCGGCGATGATGAACC 59.612 55.000 9.30 0.00 0.00 3.62
2126 2179 1.328374 GTACACCGCAGAAACGTTGTT 59.672 47.619 0.00 0.00 39.51 2.83
2177 2230 2.548875 GTGATGCAGCTCCTGAAGTAG 58.451 52.381 2.53 0.00 32.44 2.57
2201 2254 2.603473 TAGCCAGGTGCACTCGGT 60.603 61.111 17.98 11.94 44.83 4.69
2213 2266 2.338620 CTCGGTGACAGCGTTGGA 59.661 61.111 24.75 6.47 40.41 3.53
2334 2387 3.511540 CAGAGGTGGACTGACAAGTATCA 59.488 47.826 0.00 0.00 36.52 2.15
2335 2388 4.021104 CAGAGGTGGACTGACAAGTATCAA 60.021 45.833 0.00 0.00 36.52 2.57
2411 2464 2.047179 GAGTGTCAACCCGAGGGC 60.047 66.667 8.33 0.00 39.32 5.19
2439 2492 3.290776 GCGGATGTAGCGAAGGATT 57.709 52.632 0.00 0.00 0.00 3.01
2589 2643 3.204827 GCATCCAACGCAGGCGAT 61.205 61.111 21.62 5.49 42.83 4.58
2624 2678 0.110486 ACCTTGGCCTTCGTGTCAAT 59.890 50.000 3.32 0.00 0.00 2.57
2636 2690 5.339008 TTCGTGTCAATAGGAGTAGCAAT 57.661 39.130 0.00 0.00 0.00 3.56
2753 2807 7.118723 TCAATGCCAAGGAAATAATGTAGAGT 58.881 34.615 0.00 0.00 0.00 3.24
2786 2840 1.724623 GATAGCAAACTCGTCACGCAA 59.275 47.619 0.00 0.00 0.00 4.85
3175 4196 1.159285 TCGCCTAAAGTCGTCGAAGA 58.841 50.000 0.00 0.00 0.00 2.87
3181 4202 2.143594 AAAGTCGTCGAAGAGCCGCT 62.144 55.000 0.00 0.00 36.95 5.52
3272 4293 1.226030 CGTGTCGGGAGGTGAAAACC 61.226 60.000 0.00 0.00 0.00 3.27
3325 4346 1.196104 TTGGCGTTAGGTGGGTAGCT 61.196 55.000 0.00 0.00 38.41 3.32
3676 4701 3.313012 TGTGTGGTGAGAAGATTACGG 57.687 47.619 0.00 0.00 0.00 4.02
3679 4704 3.056749 GTGTGGTGAGAAGATTACGGACT 60.057 47.826 0.00 0.00 0.00 3.85
3766 4791 6.256757 GCGTGAGAACATAAGAATAGAAAGCT 59.743 38.462 0.00 0.00 0.00 3.74
3776 4801 3.194542 AGAATAGAAAGCTGCGAGAGTGT 59.805 43.478 0.00 0.00 0.00 3.55
3780 4805 4.035278 AGAAAGCTGCGAGAGTGTATAC 57.965 45.455 0.00 0.00 0.00 1.47
3948 4974 4.204799 ACAAAAGAAGAAGCCCTAAACGT 58.795 39.130 0.00 0.00 0.00 3.99
4045 5071 1.653151 GAAGTATGTGGCGAAGGGTC 58.347 55.000 0.00 0.00 0.00 4.46
4334 5360 5.642165 TGGATATAGGAGTGGAGTTAGACC 58.358 45.833 0.00 0.00 0.00 3.85
4508 5535 3.379445 CGGTGTAGCTGGACGGGT 61.379 66.667 0.00 0.00 0.00 5.28
5378 6509 2.426381 TGAGGCGCATGCAAAAATCATA 59.574 40.909 19.57 0.00 45.35 2.15
5393 6524 7.646922 GCAAAAATCATAGATGGATGAGTCAAC 59.353 37.037 0.00 0.00 39.18 3.18
6685 7871 1.277842 TGTATTGATCGGTGCACCAGT 59.722 47.619 34.16 22.17 35.14 4.00
6715 7901 2.263895 TAAGTACAGAGGTGGGCCAT 57.736 50.000 10.70 0.00 37.19 4.40
6748 7935 3.933861 ACAAAGAAACAGGAGGTGAGT 57.066 42.857 0.00 0.00 0.00 3.41
6907 8376 1.685224 CTACCTGCACCACACCCAT 59.315 57.895 0.00 0.00 0.00 4.00
7117 8683 3.136763 CCTCGGCGAGTACTATCAGTTA 58.863 50.000 32.41 0.00 0.00 2.24
7307 8874 3.450096 GGAAGGAAGACTATTACCGTGGT 59.550 47.826 0.00 0.00 0.00 4.16
7447 9014 1.348008 ATCTCCCCGTCCATGCATGT 61.348 55.000 24.58 0.00 0.00 3.21
7455 9022 0.454957 GTCCATGCATGTCGTGTTGC 60.455 55.000 24.58 2.74 39.33 4.17
7507 9074 4.865925 TGTCGGATTTTTCATAGTACACCG 59.134 41.667 0.00 0.00 39.30 4.94
7570 9159 3.733684 CGGCACAATAATAGTTGGCCAAC 60.734 47.826 36.62 36.62 41.49 3.77
7595 9184 8.917088 ACATATGCCTCATTAGCAAAACTAAAT 58.083 29.630 1.58 0.00 43.99 1.40
7622 9211 4.884668 TGTTGATACTTCCTTCGTTCCT 57.115 40.909 0.00 0.00 0.00 3.36
7623 9212 5.988310 TGTTGATACTTCCTTCGTTCCTA 57.012 39.130 0.00 0.00 0.00 2.94
7624 9213 6.349243 TGTTGATACTTCCTTCGTTCCTAA 57.651 37.500 0.00 0.00 0.00 2.69
7626 9215 7.391620 TGTTGATACTTCCTTCGTTCCTAAAT 58.608 34.615 0.00 0.00 0.00 1.40
7627 9216 8.533657 TGTTGATACTTCCTTCGTTCCTAAATA 58.466 33.333 0.00 0.00 0.00 1.40
7628 9217 9.543783 GTTGATACTTCCTTCGTTCCTAAATAT 57.456 33.333 0.00 0.00 0.00 1.28
7633 9222 8.265165 ACTTCCTTCGTTCCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
7635 9224 8.857694 TTCCTTCGTTCCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
7637 9226 8.943002 TCCTTCGTTCCTAAATATTTGTCTTTC 58.057 33.333 11.05 0.00 0.00 2.62
7638 9227 8.947115 CCTTCGTTCCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
7639 9228 9.974750 CTTCGTTCCTAAATATTTGTCTTTCTC 57.025 33.333 11.05 0.00 0.00 2.87
7640 9229 8.181487 TCGTTCCTAAATATTTGTCTTTCTCG 57.819 34.615 11.05 5.92 0.00 4.04
7642 9231 8.653338 CGTTCCTAAATATTTGTCTTTCTCGAA 58.347 33.333 11.05 0.00 0.00 3.71
7785 10390 8.768501 AAATTATGGGTTCTCTTAGATTTCCC 57.231 34.615 8.19 8.19 33.58 3.97
7786 10391 4.797912 ATGGGTTCTCTTAGATTTCCCC 57.202 45.455 11.20 6.44 32.69 4.81
7807 10412 4.103153 CCCCTTCATATAGCTCACTTGGAA 59.897 45.833 0.00 0.00 0.00 3.53
8021 10636 2.040544 GTGAATGTGCTGGACGGGG 61.041 63.158 0.00 0.00 0.00 5.73
8025 10640 2.063015 AATGTGCTGGACGGGGTGAA 62.063 55.000 0.00 0.00 0.00 3.18
8073 10688 8.719645 AGCTCCACTAATCTACTTATCTCAAT 57.280 34.615 0.00 0.00 0.00 2.57
8199 10814 8.869897 GCATGCCATTTTCATTCTATTATGATG 58.130 33.333 6.36 0.00 34.67 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.119743 CCACATCAGATGCGTTTCACATT 60.120 43.478 10.59 0.00 0.00 2.71
2 3 1.805943 CCACATCAGATGCGTTTCACA 59.194 47.619 10.59 0.00 0.00 3.58
4 5 1.452110 CCCACATCAGATGCGTTTCA 58.548 50.000 10.59 0.00 0.00 2.69
6 7 0.322816 AGCCCACATCAGATGCGTTT 60.323 50.000 10.59 0.00 0.00 3.60
7 8 0.541392 TAGCCCACATCAGATGCGTT 59.459 50.000 10.59 0.00 0.00 4.84
8 9 0.105593 CTAGCCCACATCAGATGCGT 59.894 55.000 10.59 0.00 0.00 5.24
9 10 1.226686 GCTAGCCCACATCAGATGCG 61.227 60.000 10.59 0.35 0.00 4.73
10 11 0.108207 AGCTAGCCCACATCAGATGC 59.892 55.000 12.13 0.00 0.00 3.91
11 12 2.634815 AAGCTAGCCCACATCAGATG 57.365 50.000 12.13 9.03 0.00 2.90
12 13 3.495806 GCTAAAGCTAGCCCACATCAGAT 60.496 47.826 12.13 0.00 44.22 2.90
13 14 2.158900 GCTAAAGCTAGCCCACATCAGA 60.159 50.000 12.13 0.00 44.22 3.27
14 15 2.216898 GCTAAAGCTAGCCCACATCAG 58.783 52.381 12.13 0.57 44.22 2.90
15 16 2.332063 GCTAAAGCTAGCCCACATCA 57.668 50.000 12.13 0.00 44.22 3.07
53 54 6.993786 TGTGTCTGTACTGATGTTCAAAAA 57.006 33.333 5.69 0.00 0.00 1.94
54 55 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
55 56 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
56 57 4.511454 GCTTGTGTCTGTACTGATGTTCAA 59.489 41.667 5.69 8.15 0.00 2.69
57 58 4.058124 GCTTGTGTCTGTACTGATGTTCA 58.942 43.478 5.69 0.00 0.00 3.18
58 59 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
59 60 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
60 61 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
61 62 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
62 63 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
63 64 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
64 65 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
65 66 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
66 67 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
67 68 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
68 69 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
69 70 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
70 71 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
71 72 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
72 73 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
73 74 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
74 75 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
79 80 3.119628 GTGTATGTGCGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
80 81 4.299155 AGTGTATGTGCGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
81 82 5.399596 GTGAGTGTATGTGCGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
82 83 5.278604 GTGAGTGTATGTGCGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
83 84 4.444388 GGTGAGTGTATGTGCGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
84 85 4.500887 GGGTGAGTGTATGTGCGTGTATAT 60.501 45.833 0.00 0.00 0.00 0.86
85 86 3.181484 GGGTGAGTGTATGTGCGTGTATA 60.181 47.826 0.00 0.00 0.00 1.47
86 87 2.418197 GGGTGAGTGTATGTGCGTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
87 88 1.067425 GGGTGAGTGTATGTGCGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
88 89 0.320421 GGGTGAGTGTATGTGCGTGT 60.320 55.000 0.00 0.00 0.00 4.49
89 90 1.019278 GGGGTGAGTGTATGTGCGTG 61.019 60.000 0.00 0.00 0.00 5.34
90 91 1.192146 AGGGGTGAGTGTATGTGCGT 61.192 55.000 0.00 0.00 0.00 5.24
91 92 0.821517 TAGGGGTGAGTGTATGTGCG 59.178 55.000 0.00 0.00 0.00 5.34
92 93 2.434336 TCATAGGGGTGAGTGTATGTGC 59.566 50.000 0.00 0.00 0.00 4.57
93 94 4.442706 GTTCATAGGGGTGAGTGTATGTG 58.557 47.826 0.00 0.00 0.00 3.21
94 95 3.132289 CGTTCATAGGGGTGAGTGTATGT 59.868 47.826 0.00 0.00 0.00 2.29
95 96 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
96 97 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
97 98 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
98 99 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
99 100 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
100 101 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
101 102 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
102 103 0.908910 ATGTGCGTTCATAGGGGTGA 59.091 50.000 0.00 0.00 0.00 4.02
103 104 2.210116 GTATGTGCGTTCATAGGGGTG 58.790 52.381 2.83 0.00 32.01 4.61
104 105 1.202486 CGTATGTGCGTTCATAGGGGT 60.202 52.381 11.13 0.00 34.54 4.95
105 106 1.497991 CGTATGTGCGTTCATAGGGG 58.502 55.000 11.13 0.39 34.54 4.79
106 107 0.859232 GCGTATGTGCGTTCATAGGG 59.141 55.000 16.69 8.49 36.95 3.53
107 108 1.257936 GTGCGTATGTGCGTTCATAGG 59.742 52.381 13.25 13.25 38.44 2.57
108 109 1.923864 TGTGCGTATGTGCGTTCATAG 59.076 47.619 2.83 0.73 37.81 2.23
109 110 1.656594 GTGTGCGTATGTGCGTTCATA 59.343 47.619 0.00 0.00 37.81 2.15
110 111 0.442310 GTGTGCGTATGTGCGTTCAT 59.558 50.000 0.00 0.87 37.81 2.57
111 112 1.561717 GGTGTGCGTATGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
112 113 1.131826 GGTGTGCGTATGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
113 114 2.322081 GGGTGTGCGTATGTGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
114 115 1.879737 TAGGGTGTGCGTATGTGCGT 61.880 55.000 0.00 0.00 37.81 5.24
115 116 1.153726 TAGGGTGTGCGTATGTGCG 60.154 57.895 0.00 0.00 37.81 5.34
116 117 1.087771 GGTAGGGTGTGCGTATGTGC 61.088 60.000 0.00 0.00 0.00 4.57
117 118 0.461339 GGGTAGGGTGTGCGTATGTG 60.461 60.000 0.00 0.00 0.00 3.21
118 119 1.619807 GGGGTAGGGTGTGCGTATGT 61.620 60.000 0.00 0.00 0.00 2.29
119 120 1.145377 GGGGTAGGGTGTGCGTATG 59.855 63.158 0.00 0.00 0.00 2.39
120 121 0.262580 TAGGGGTAGGGTGTGCGTAT 59.737 55.000 0.00 0.00 0.00 3.06
121 122 0.262580 ATAGGGGTAGGGTGTGCGTA 59.737 55.000 0.00 0.00 0.00 4.42
122 123 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
123 124 1.445942 CATAGGGGTAGGGTGTGCG 59.554 63.158 0.00 0.00 0.00 5.34
124 125 1.837090 CCATAGGGGTAGGGTGTGC 59.163 63.158 0.00 0.00 0.00 4.57
136 137 1.209504 TCTTTCGAAGGTGCCCATAGG 59.790 52.381 7.20 0.00 0.00 2.57
137 138 2.093447 AGTCTTTCGAAGGTGCCCATAG 60.093 50.000 7.20 0.00 0.00 2.23
138 139 1.906574 AGTCTTTCGAAGGTGCCCATA 59.093 47.619 7.20 0.00 0.00 2.74
139 140 0.693049 AGTCTTTCGAAGGTGCCCAT 59.307 50.000 7.20 0.00 0.00 4.00
140 141 0.250295 CAGTCTTTCGAAGGTGCCCA 60.250 55.000 7.20 0.00 0.00 5.36
141 142 0.034896 TCAGTCTTTCGAAGGTGCCC 59.965 55.000 7.20 0.00 0.00 5.36
142 143 1.433534 CTCAGTCTTTCGAAGGTGCC 58.566 55.000 7.20 0.00 0.00 5.01
143 144 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
144 145 1.433534 GGCTCAGTCTTTCGAAGGTG 58.566 55.000 7.20 0.00 0.00 4.00
145 146 0.038159 CGGCTCAGTCTTTCGAAGGT 60.038 55.000 7.20 0.00 0.00 3.50
146 147 0.737715 CCGGCTCAGTCTTTCGAAGG 60.738 60.000 0.00 0.00 0.00 3.46
147 148 1.355066 GCCGGCTCAGTCTTTCGAAG 61.355 60.000 22.15 0.00 0.00 3.79
148 149 1.374252 GCCGGCTCAGTCTTTCGAA 60.374 57.895 22.15 0.00 0.00 3.71
149 150 1.888436 ATGCCGGCTCAGTCTTTCGA 61.888 55.000 29.70 1.81 0.00 3.71
150 151 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
151 152 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
152 153 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
153 154 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
154 155 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
155 156 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
156 157 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
157 158 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
158 159 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
159 160 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
160 161 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
161 162 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
162 163 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
163 164 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
164 165 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
165 166 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
166 167 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
167 168 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
168 169 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
169 170 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
170 171 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
171 172 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
172 173 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
173 174 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
174 175 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
175 176 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
176 177 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
182 183 1.967762 CGCTTACGGTGACTTCGTAA 58.032 50.000 6.65 6.65 46.48 3.18
183 184 0.454957 GCGCTTACGGTGACTTCGTA 60.455 55.000 0.00 0.00 41.38 3.43
184 185 1.731969 GCGCTTACGGTGACTTCGT 60.732 57.895 0.00 0.00 43.64 3.85
185 186 2.442188 GGCGCTTACGGTGACTTCG 61.442 63.158 7.64 0.00 40.57 3.79
186 187 1.077089 GAGGCGCTTACGGTGACTTC 61.077 60.000 7.64 0.00 44.99 3.01
187 188 1.080025 GAGGCGCTTACGGTGACTT 60.080 57.895 7.64 0.00 44.99 3.01
189 190 2.879462 CGAGGCGCTTACGGTGAC 60.879 66.667 7.64 0.00 40.57 3.67
190 191 3.332493 GACGAGGCGCTTACGGTGA 62.332 63.158 20.18 0.00 40.57 4.02
191 192 2.879462 GACGAGGCGCTTACGGTG 60.879 66.667 20.18 3.40 40.57 4.94
192 193 4.471726 CGACGAGGCGCTTACGGT 62.472 66.667 20.18 7.93 40.57 4.83
193 194 4.471726 ACGACGAGGCGCTTACGG 62.472 66.667 20.18 5.08 40.57 4.02
194 195 2.943034 GACGACGAGGCGCTTACG 60.943 66.667 7.64 13.32 44.07 3.18
206 207 0.522915 GAGATGTTCCCGTCGACGAC 60.523 60.000 37.65 27.09 43.02 4.34
207 208 1.651240 GGAGATGTTCCCGTCGACGA 61.651 60.000 37.65 18.99 40.37 4.20
208 209 1.226603 GGAGATGTTCCCGTCGACG 60.227 63.158 30.33 30.33 40.37 5.12
209 210 4.808649 GGAGATGTTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20
217 218 3.604582 CTTTCAGTGGGAGGAGATGTTC 58.395 50.000 0.00 0.00 0.00 3.18
218 219 2.290577 GCTTTCAGTGGGAGGAGATGTT 60.291 50.000 0.00 0.00 0.00 2.71
219 220 1.280421 GCTTTCAGTGGGAGGAGATGT 59.720 52.381 0.00 0.00 0.00 3.06
220 221 1.741732 CGCTTTCAGTGGGAGGAGATG 60.742 57.143 0.00 0.00 0.00 2.90
221 222 0.539051 CGCTTTCAGTGGGAGGAGAT 59.461 55.000 0.00 0.00 0.00 2.75
222 223 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
223 224 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
224 225 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
225 226 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
226 227 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
227 228 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
228 229 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
239 240 1.010797 CAGAATTTCCGGCGATGCG 60.011 57.895 9.30 0.00 0.00 4.73
240 241 0.732571 TTCAGAATTTCCGGCGATGC 59.267 50.000 9.30 0.00 0.00 3.91
241 242 3.698029 ATTTCAGAATTTCCGGCGATG 57.302 42.857 9.30 0.00 0.00 3.84
242 243 5.828299 TTTATTTCAGAATTTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
243 244 5.220970 GGATTTATTTCAGAATTTCCGGCGA 60.221 40.000 9.30 0.00 0.00 5.54
244 245 4.976116 GGATTTATTTCAGAATTTCCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
245 246 5.901552 TGGATTTATTTCAGAATTTCCGGC 58.098 37.500 0.00 0.00 0.00 6.13
246 247 6.321181 TCCTGGATTTATTTCAGAATTTCCGG 59.679 38.462 0.00 0.00 30.94 5.14
247 248 7.333528 TCCTGGATTTATTTCAGAATTTCCG 57.666 36.000 0.00 0.00 0.00 4.30
254 255 8.352201 CGCATTTATTCCTGGATTTATTTCAGA 58.648 33.333 0.00 0.00 0.00 3.27
255 256 8.352201 TCGCATTTATTCCTGGATTTATTTCAG 58.648 33.333 0.00 0.00 0.00 3.02
256 257 8.231692 TCGCATTTATTCCTGGATTTATTTCA 57.768 30.769 0.00 0.00 0.00 2.69
257 258 7.327032 GCTCGCATTTATTCCTGGATTTATTTC 59.673 37.037 0.00 0.00 0.00 2.17
258 259 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
259 260 6.265196 TGCTCGCATTTATTCCTGGATTTATT 59.735 34.615 0.00 0.00 0.00 1.40
260 261 5.769662 TGCTCGCATTTATTCCTGGATTTAT 59.230 36.000 0.00 0.00 0.00 1.40
261 262 5.008613 GTGCTCGCATTTATTCCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
262 263 3.953612 TGCTCGCATTTATTCCTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
263 264 3.316308 GTGCTCGCATTTATTCCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
264 265 2.880890 GTGCTCGCATTTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
265 266 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
266 267 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
267 268 2.016318 TGGTGCTCGCATTTATTCCTG 58.984 47.619 0.00 0.00 0.00 3.86
268 269 2.418368 TGGTGCTCGCATTTATTCCT 57.582 45.000 0.00 0.00 0.00 3.36
269 270 2.682856 TCTTGGTGCTCGCATTTATTCC 59.317 45.455 0.00 0.00 0.00 3.01
270 271 4.558538 ATCTTGGTGCTCGCATTTATTC 57.441 40.909 0.00 0.00 0.00 1.75
271 272 4.989279 AATCTTGGTGCTCGCATTTATT 57.011 36.364 0.00 0.00 0.00 1.40
272 273 4.398988 TCAAATCTTGGTGCTCGCATTTAT 59.601 37.500 0.00 0.00 0.00 1.40
273 274 3.755905 TCAAATCTTGGTGCTCGCATTTA 59.244 39.130 0.00 0.00 0.00 1.40
274 275 2.557924 TCAAATCTTGGTGCTCGCATTT 59.442 40.909 0.00 0.00 0.00 2.32
275 276 2.161855 TCAAATCTTGGTGCTCGCATT 58.838 42.857 0.00 0.00 0.00 3.56
276 277 1.825090 TCAAATCTTGGTGCTCGCAT 58.175 45.000 0.00 0.00 0.00 4.73
277 278 1.266718 GTTCAAATCTTGGTGCTCGCA 59.733 47.619 0.00 0.00 0.00 5.10
278 279 1.401539 GGTTCAAATCTTGGTGCTCGC 60.402 52.381 0.00 0.00 0.00 5.03
279 280 1.200020 GGGTTCAAATCTTGGTGCTCG 59.800 52.381 0.00 0.00 0.00 5.03
280 281 2.229784 CAGGGTTCAAATCTTGGTGCTC 59.770 50.000 0.00 0.00 0.00 4.26
281 282 2.242043 CAGGGTTCAAATCTTGGTGCT 58.758 47.619 0.00 0.00 0.00 4.40
282 283 1.273327 CCAGGGTTCAAATCTTGGTGC 59.727 52.381 0.00 0.00 0.00 5.01
283 284 2.297033 CACCAGGGTTCAAATCTTGGTG 59.703 50.000 19.12 19.12 39.38 4.17
284 285 2.597455 CACCAGGGTTCAAATCTTGGT 58.403 47.619 4.09 4.09 0.00 3.67
285 286 1.895131 CCACCAGGGTTCAAATCTTGG 59.105 52.381 2.81 2.81 0.00 3.61
298 299 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
299 300 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
300 301 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
301 302 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
302 303 2.270874 CTGTGGTATCCCCAGCCCAC 62.271 65.000 0.00 0.00 46.45 4.61
303 304 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
304 305 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
305 306 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
306 307 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
311 312 3.644335 AGTTAGAGGGACTGTGGTATCC 58.356 50.000 0.00 0.00 41.55 2.59
312 313 5.477637 GGATAGTTAGAGGGACTGTGGTATC 59.522 48.000 0.00 0.00 41.55 2.24
313 314 5.103215 TGGATAGTTAGAGGGACTGTGGTAT 60.103 44.000 0.00 0.00 41.55 2.73
314 315 4.231195 TGGATAGTTAGAGGGACTGTGGTA 59.769 45.833 0.00 0.00 41.55 3.25
315 316 3.012502 TGGATAGTTAGAGGGACTGTGGT 59.987 47.826 0.00 0.00 41.55 4.16
316 317 3.643237 TGGATAGTTAGAGGGACTGTGG 58.357 50.000 0.00 0.00 41.55 4.17
317 318 4.141914 GGTTGGATAGTTAGAGGGACTGTG 60.142 50.000 0.00 0.00 41.55 3.66
318 319 4.031611 GGTTGGATAGTTAGAGGGACTGT 58.968 47.826 0.00 0.00 41.55 3.55
319 320 4.030913 TGGTTGGATAGTTAGAGGGACTG 58.969 47.826 0.00 0.00 41.55 3.51
321 322 3.773119 TGTGGTTGGATAGTTAGAGGGAC 59.227 47.826 0.00 0.00 0.00 4.46
322 323 4.030913 CTGTGGTTGGATAGTTAGAGGGA 58.969 47.826 0.00 0.00 0.00 4.20
323 324 3.134804 CCTGTGGTTGGATAGTTAGAGGG 59.865 52.174 0.00 0.00 0.00 4.30
324 325 3.775316 ACCTGTGGTTGGATAGTTAGAGG 59.225 47.826 0.00 0.00 27.29 3.69
325 326 5.422214 AACCTGTGGTTGGATAGTTAGAG 57.578 43.478 0.71 0.00 45.07 2.43
340 341 1.600023 TAAAGGCGAACCAACCTGTG 58.400 50.000 0.00 0.00 39.06 3.66
341 342 1.951602 GTTAAAGGCGAACCAACCTGT 59.048 47.619 0.00 0.00 39.06 4.00
342 343 1.268625 GGTTAAAGGCGAACCAACCTG 59.731 52.381 12.36 0.00 44.92 4.00
343 344 1.612676 GGTTAAAGGCGAACCAACCT 58.387 50.000 12.36 0.00 44.92 3.50
348 349 4.834357 TTAAAGTGGTTAAAGGCGAACC 57.166 40.909 10.85 10.85 45.64 3.62
349 350 8.975410 ATTAATTAAAGTGGTTAAAGGCGAAC 57.025 30.769 1.21 0.00 35.33 3.95
350 351 9.628746 GAATTAATTAAAGTGGTTAAAGGCGAA 57.371 29.630 1.21 0.00 35.33 4.70
351 352 9.016438 AGAATTAATTAAAGTGGTTAAAGGCGA 57.984 29.630 1.21 0.00 35.33 5.54
352 353 9.634163 AAGAATTAATTAAAGTGGTTAAAGGCG 57.366 29.630 1.21 0.00 35.33 5.52
372 373 9.362539 CTCAAAGCAAGCATATAAACAAGAATT 57.637 29.630 0.00 0.00 0.00 2.17
373 374 8.742777 TCTCAAAGCAAGCATATAAACAAGAAT 58.257 29.630 0.00 0.00 0.00 2.40
374 375 8.109705 TCTCAAAGCAAGCATATAAACAAGAA 57.890 30.769 0.00 0.00 0.00 2.52
375 376 7.686438 TCTCAAAGCAAGCATATAAACAAGA 57.314 32.000 0.00 0.00 0.00 3.02
376 377 8.186163 TCATCTCAAAGCAAGCATATAAACAAG 58.814 33.333 0.00 0.00 0.00 3.16
377 378 8.054152 TCATCTCAAAGCAAGCATATAAACAA 57.946 30.769 0.00 0.00 0.00 2.83
378 379 7.628769 TCATCTCAAAGCAAGCATATAAACA 57.371 32.000 0.00 0.00 0.00 2.83
389 390 4.646040 CCCCACATATTCATCTCAAAGCAA 59.354 41.667 0.00 0.00 0.00 3.91
445 446 6.448006 GCTATAGCCGAGAAGACTGAATTTA 58.552 40.000 14.13 0.00 34.31 1.40
485 489 8.783093 CCACAGACATTGTCAAAATAAAGAGTA 58.217 33.333 18.57 0.00 38.16 2.59
605 609 6.616959 TGATATTATGGGATGGAGGGAGTATG 59.383 42.308 0.00 0.00 0.00 2.39
609 613 5.221601 CGATGATATTATGGGATGGAGGGAG 60.222 48.000 0.00 0.00 0.00 4.30
610 614 4.655649 CGATGATATTATGGGATGGAGGGA 59.344 45.833 0.00 0.00 0.00 4.20
611 615 4.410228 ACGATGATATTATGGGATGGAGGG 59.590 45.833 0.00 0.00 0.00 4.30
612 616 5.620738 ACGATGATATTATGGGATGGAGG 57.379 43.478 0.00 0.00 0.00 4.30
613 617 6.882656 AGAACGATGATATTATGGGATGGAG 58.117 40.000 0.00 0.00 0.00 3.86
614 618 6.874278 AGAACGATGATATTATGGGATGGA 57.126 37.500 0.00 0.00 0.00 3.41
615 619 7.105588 TCAAGAACGATGATATTATGGGATGG 58.894 38.462 0.00 0.00 0.00 3.51
616 620 8.552083 TTCAAGAACGATGATATTATGGGATG 57.448 34.615 0.00 0.00 0.00 3.51
619 623 9.002600 TCATTTCAAGAACGATGATATTATGGG 57.997 33.333 0.00 0.00 0.00 4.00
978 1015 1.360192 GCTGCTGACAACAACCACC 59.640 57.895 0.00 0.00 0.00 4.61
981 1018 0.953727 TGATGCTGCTGACAACAACC 59.046 50.000 0.00 0.00 0.00 3.77
1021 1058 4.214327 CTCCCGCTCCTTCTCCGC 62.214 72.222 0.00 0.00 0.00 5.54
1094 1131 1.962306 GTAAACGGCGGCTTGTCCA 60.962 57.895 13.24 0.00 34.01 4.02
1303 1356 1.153369 CCCAGACGCCGAACATGAT 60.153 57.895 0.00 0.00 0.00 2.45
1356 1409 2.360726 TCGAGCAGCGGGTAGTCA 60.361 61.111 0.00 0.00 41.33 3.41
1553 1606 0.737367 CACGACGATGAGCACCACAT 60.737 55.000 0.00 0.00 0.00 3.21
1728 1781 5.749109 CCATATCTTGTCCTTCTACACGAAC 59.251 44.000 0.00 0.00 32.21 3.95
1938 1991 2.674462 GCCAACTTCTACCTTCGAGGAC 60.674 54.545 7.76 0.00 37.67 3.85
1956 2009 1.191489 TGATGACGAAGGGACTGCCA 61.191 55.000 0.00 0.00 40.86 4.92
2036 2089 3.254166 GGACATTCACTTTGTGCATGAGT 59.746 43.478 14.95 0.00 38.95 3.41
2040 2093 2.029649 GCTGGACATTCACTTTGTGCAT 60.030 45.455 0.00 0.00 43.20 3.96
2041 2094 1.337703 GCTGGACATTCACTTTGTGCA 59.662 47.619 0.00 0.00 42.18 4.57
2091 2144 3.072468 TACCTCTCCGCCAACCCG 61.072 66.667 0.00 0.00 0.00 5.28
2126 2179 2.751259 CAGGCTACGGTTGTCTACTGTA 59.249 50.000 6.05 6.05 44.60 2.74
2201 2254 1.887242 GCTGTGTCCAACGCTGTCA 60.887 57.895 0.00 0.00 31.40 3.58
2213 2266 1.587054 GCTGAGTACCGAGCTGTGT 59.413 57.895 0.00 0.00 32.12 3.72
2323 2376 1.350684 TGGCTGCCTTGATACTTGTCA 59.649 47.619 21.03 0.00 0.00 3.58
2327 2380 3.181526 GCTGGCTGCCTTGATACTT 57.818 52.632 21.03 0.00 35.15 2.24
2347 2400 1.319541 GCCTACTCCGATGCAGACTA 58.680 55.000 0.00 0.00 0.00 2.59
2578 2632 2.859273 CTTGAGGGATCGCCTGCGTT 62.859 60.000 11.68 2.77 40.74 4.84
2589 2643 0.411452 AGGTCTCTGCTCTTGAGGGA 59.589 55.000 0.00 0.00 32.78 4.20
2624 2678 4.215908 CTGTCACCCTATTGCTACTCCTA 58.784 47.826 0.00 0.00 0.00 2.94
2636 2690 1.339055 GCATGCTCAACTGTCACCCTA 60.339 52.381 11.37 0.00 0.00 3.53
2753 2807 2.561209 TGCTATCAAGGACCTGGGTA 57.439 50.000 0.00 0.00 0.00 3.69
2786 2840 2.145397 TCAGCAGATTACTCTCCGGT 57.855 50.000 0.00 0.00 0.00 5.28
3158 4176 1.270068 GCTCTTCGACGACTTTAGGC 58.730 55.000 0.00 0.00 0.00 3.93
3272 4293 1.188219 ATGATCCCGTCTCCCATCGG 61.188 60.000 0.00 0.00 45.42 4.18
3310 4331 1.471119 TCTCAGCTACCCACCTAACG 58.529 55.000 0.00 0.00 0.00 3.18
3325 4346 0.737367 CGTCGCCTGCATCTTTCTCA 60.737 55.000 0.00 0.00 0.00 3.27
3676 4701 1.527311 GAGTTTGACAACCTCGCAGTC 59.473 52.381 0.00 0.00 32.70 3.51
3679 4704 0.468226 AGGAGTTTGACAACCTCGCA 59.532 50.000 6.65 0.00 32.70 5.10
3766 4791 3.488553 CGGATGTTGTATACACTCTCGCA 60.489 47.826 4.68 0.00 40.19 5.10
3948 4974 3.428452 CCTCGGTAAACATGCTCGTCTTA 60.428 47.826 0.00 0.00 0.00 2.10
4045 5071 0.758734 TGGGTCATCCTAATCCTGCG 59.241 55.000 0.00 0.00 36.20 5.18
4115 5141 0.040058 TCCGCCACCTCCACTACTTA 59.960 55.000 0.00 0.00 0.00 2.24
4508 5535 0.246635 GCTCTCCACAACGCTCCTTA 59.753 55.000 0.00 0.00 0.00 2.69
4708 5738 0.249911 CCTACTCCATGCCGGTTAGC 60.250 60.000 1.90 0.00 35.57 3.09
4709 5739 0.249911 GCCTACTCCATGCCGGTTAG 60.250 60.000 1.90 0.00 35.57 2.34
4710 5740 1.692173 GGCCTACTCCATGCCGGTTA 61.692 60.000 1.90 0.00 35.08 2.85
5053 6113 4.929707 CTTCCCGCCCATACCGGC 62.930 72.222 0.00 0.00 44.27 6.13
5054 6114 4.250305 CCTTCCCGCCCATACCGG 62.250 72.222 0.00 0.00 45.17 5.28
5055 6115 4.929707 GCCTTCCCGCCCATACCG 62.930 72.222 0.00 0.00 0.00 4.02
5056 6116 4.929707 CGCCTTCCCGCCCATACC 62.930 72.222 0.00 0.00 0.00 2.73
5057 6117 4.929707 CCGCCTTCCCGCCCATAC 62.930 72.222 0.00 0.00 0.00 2.39
5141 6271 2.040359 TGACCCACACCACCCTCA 60.040 61.111 0.00 0.00 0.00 3.86
5378 6509 3.607741 CAGCAAGTTGACTCATCCATCT 58.392 45.455 7.16 0.00 0.00 2.90
5393 6524 0.039527 GTTTTACGGGTGCCAGCAAG 60.040 55.000 0.00 0.00 0.00 4.01
5586 6718 1.136891 TCGGCACTCATGATCAACGAT 59.863 47.619 0.00 0.00 0.00 3.73
6624 7810 7.155328 CCATATCTTGTCCTTCTACATGGTAC 58.845 42.308 0.00 0.00 0.00 3.34
6685 7871 7.609146 CCCACCTCTGTACTTATATATACGTGA 59.391 40.741 11.18 1.38 0.00 4.35
6715 7901 8.653191 TCCTGTTTCTTTGTATAGTTGAGGTTA 58.347 33.333 0.00 0.00 0.00 2.85
6748 7935 8.532819 TGTGTATGTGTATATTTGTGTGTAGGA 58.467 33.333 0.00 0.00 0.00 2.94
7307 8874 6.959639 AAGTAAAGATGGAACTGAGCAAAA 57.040 33.333 0.00 0.00 0.00 2.44
7447 9014 5.505985 GGTTTATTGGTTTACAGCAACACGA 60.506 40.000 0.00 0.00 43.12 4.35
7455 9022 7.142680 ACACGAAATGGTTTATTGGTTTACAG 58.857 34.615 0.00 0.00 0.00 2.74
7507 9074 2.946564 CGAAAGCCATGGAAAAGAACC 58.053 47.619 18.40 0.00 0.00 3.62
7548 9115 2.020720 TGGCCAACTATTATTGTGCCG 58.979 47.619 0.61 0.00 43.39 5.69
7595 9184 9.321562 GGAACGAAGGAAGTATCAACATAAATA 57.678 33.333 0.00 0.00 0.00 1.40
7610 9199 8.857694 AAGACAAATATTTAGGAACGAAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
7612 9201 8.947115 AGAAAGACAAATATTTAGGAACGAAGG 58.053 33.333 0.00 0.00 0.00 3.46
7613 9202 9.974750 GAGAAAGACAAATATTTAGGAACGAAG 57.025 33.333 0.00 0.00 0.00 3.79
7616 9205 8.181487 TCGAGAAAGACAAATATTTAGGAACG 57.819 34.615 0.00 1.20 0.00 3.95
7626 9215 7.803189 GCAAGAACATTTCGAGAAAGACAAATA 59.197 33.333 4.54 0.00 33.32 1.40
7627 9216 6.638468 GCAAGAACATTTCGAGAAAGACAAAT 59.362 34.615 4.54 0.00 33.32 2.32
7628 9217 5.971202 GCAAGAACATTTCGAGAAAGACAAA 59.029 36.000 4.54 0.00 33.32 2.83
7630 9219 4.816385 AGCAAGAACATTTCGAGAAAGACA 59.184 37.500 4.54 0.00 33.32 3.41
7631 9220 5.349824 AGCAAGAACATTTCGAGAAAGAC 57.650 39.130 4.54 0.00 33.32 3.01
7633 9222 5.319931 GCTAGCAAGAACATTTCGAGAAAG 58.680 41.667 10.63 0.33 33.32 2.62
7635 9224 3.684788 GGCTAGCAAGAACATTTCGAGAA 59.315 43.478 18.24 0.00 34.02 2.87
7637 9226 3.002791 TGGCTAGCAAGAACATTTCGAG 58.997 45.455 18.24 0.00 34.02 4.04
7638 9227 3.052455 TGGCTAGCAAGAACATTTCGA 57.948 42.857 18.24 0.00 34.02 3.71
7639 9228 4.100529 CAATGGCTAGCAAGAACATTTCG 58.899 43.478 18.24 2.37 32.69 3.46
7640 9229 4.860907 CACAATGGCTAGCAAGAACATTTC 59.139 41.667 18.24 0.00 32.69 2.17
7642 9231 3.828451 ACACAATGGCTAGCAAGAACATT 59.172 39.130 18.24 13.13 34.26 2.71
7770 10375 7.954539 ATATGAAGGGGGAAATCTAAGAGAA 57.045 36.000 0.00 0.00 0.00 2.87
7783 10388 3.244700 CCAAGTGAGCTATATGAAGGGGG 60.245 52.174 0.00 0.00 0.00 5.40
7784 10389 3.648067 TCCAAGTGAGCTATATGAAGGGG 59.352 47.826 0.00 0.00 0.00 4.79
7785 10390 4.963318 TCCAAGTGAGCTATATGAAGGG 57.037 45.455 0.00 0.00 0.00 3.95
7786 10391 8.538701 AGATATTCCAAGTGAGCTATATGAAGG 58.461 37.037 0.00 0.00 0.00 3.46
7920 10529 6.238211 GGTTACACTCACATCTCATGTATTGC 60.238 42.308 0.00 0.00 42.70 3.56
7926 10535 2.604914 GCGGTTACACTCACATCTCATG 59.395 50.000 0.00 0.00 0.00 3.07
7993 10608 3.261580 CAGCACATTCACTAACGATGGA 58.738 45.455 0.00 0.00 0.00 3.41
7996 10611 3.262420 GTCCAGCACATTCACTAACGAT 58.738 45.455 0.00 0.00 0.00 3.73
8073 10688 5.193527 TGAGGTGGATCTTTTCCCATTCATA 59.806 40.000 0.00 0.00 44.77 2.15
8153 10768 3.646611 CATGTTTGCATGTTGAGGTGA 57.353 42.857 0.00 0.00 45.48 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.