Multiple sequence alignment - TraesCS6B01G309400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G309400 chr6B 100.000 6324 0 0 1 6324 554169305 554162982 0.000000e+00 11679.0
1 TraesCS6B01G309400 chr6B 89.775 1379 105 23 3537 4896 554123935 554122574 0.000000e+00 1733.0
2 TraesCS6B01G309400 chr6B 85.572 201 14 8 5131 5323 554122564 554122371 5.000000e-46 196.0
3 TraesCS6B01G309400 chr6A 93.101 3638 158 47 1821 5419 508292100 508295683 0.000000e+00 5241.0
4 TraesCS6B01G309400 chr6A 89.898 1376 104 23 3537 4897 508333484 508334839 0.000000e+00 1738.0
5 TraesCS6B01G309400 chr6A 93.906 1165 43 18 644 1787 508290945 508292102 0.000000e+00 1733.0
6 TraesCS6B01G309400 chr6A 89.602 1231 127 1 3719 4949 509562293 509561064 0.000000e+00 1563.0
7 TraesCS6B01G309400 chr6A 88.567 1207 116 10 3722 4911 509285785 509284584 0.000000e+00 1445.0
8 TraesCS6B01G309400 chr6A 94.325 652 31 6 1 649 508290248 508290896 0.000000e+00 994.0
9 TraesCS6B01G309400 chr6D 94.756 2536 101 16 3006 5532 367864200 367866712 0.000000e+00 3917.0
10 TraesCS6B01G309400 chr6D 90.731 1532 73 30 1473 2995 367862644 367864115 0.000000e+00 1978.0
11 TraesCS6B01G309400 chr6D 92.118 1218 85 8 3682 4897 367875895 367877103 0.000000e+00 1707.0
12 TraesCS6B01G309400 chr6D 89.789 1234 122 2 3719 4949 368741027 368739795 0.000000e+00 1578.0
13 TraesCS6B01G309400 chr6D 89.924 1191 118 2 3722 4911 368372233 368371044 0.000000e+00 1533.0
14 TraesCS6B01G309400 chr6D 94.150 718 25 5 644 1349 367861561 367862273 0.000000e+00 1077.0
15 TraesCS6B01G309400 chr6D 93.272 654 31 7 1 649 367860871 367861516 0.000000e+00 952.0
16 TraesCS6B01G309400 chr6D 86.967 798 56 17 5558 6323 367867711 367868492 0.000000e+00 854.0
17 TraesCS6B01G309400 chr6D 86.829 205 20 4 5119 5323 367877100 367877297 8.250000e-54 222.0
18 TraesCS6B01G309400 chr1D 85.407 418 57 4 3700 4114 93821396 93821812 1.260000e-116 431.0
19 TraesCS6B01G309400 chr5D 89.130 46 5 0 415 460 264925450 264925405 2.460000e-04 58.4
20 TraesCS6B01G309400 chr3B 92.683 41 2 1 5490 5529 257064097 257064057 2.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G309400 chr6B 554162982 554169305 6323 True 11679.0 11679 100.000000 1 6324 1 chr6B.!!$R1 6323
1 TraesCS6B01G309400 chr6B 554122371 554123935 1564 True 964.5 1733 87.673500 3537 5323 2 chr6B.!!$R2 1786
2 TraesCS6B01G309400 chr6A 508290248 508295683 5435 False 2656.0 5241 93.777333 1 5419 3 chr6A.!!$F2 5418
3 TraesCS6B01G309400 chr6A 508333484 508334839 1355 False 1738.0 1738 89.898000 3537 4897 1 chr6A.!!$F1 1360
4 TraesCS6B01G309400 chr6A 509561064 509562293 1229 True 1563.0 1563 89.602000 3719 4949 1 chr6A.!!$R2 1230
5 TraesCS6B01G309400 chr6A 509284584 509285785 1201 True 1445.0 1445 88.567000 3722 4911 1 chr6A.!!$R1 1189
6 TraesCS6B01G309400 chr6D 367860871 367868492 7621 False 1755.6 3917 91.975200 1 6323 5 chr6D.!!$F1 6322
7 TraesCS6B01G309400 chr6D 368739795 368741027 1232 True 1578.0 1578 89.789000 3719 4949 1 chr6D.!!$R2 1230
8 TraesCS6B01G309400 chr6D 368371044 368372233 1189 True 1533.0 1533 89.924000 3722 4911 1 chr6D.!!$R1 1189
9 TraesCS6B01G309400 chr6D 367875895 367877297 1402 False 964.5 1707 89.473500 3682 5323 2 chr6D.!!$F2 1641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 613 0.984109 GATGTTTGCACCGCGAATTG 59.016 50.000 8.23 2.28 34.24 2.32 F
1376 1450 0.037790 ACTCGAGAGGCTGCTGTTTC 60.038 55.000 21.68 0.00 0.00 2.78 F
2585 2939 0.312416 CTCCTAATCACTCGGAGCCG 59.688 60.000 4.58 1.74 38.05 5.52 F
2632 3019 0.106015 ATCCAGGGTTAATGCCTGCC 60.106 55.000 0.00 0.00 0.00 4.85 F
2641 3028 0.179020 TAATGCCTGCCCCGAATCAG 60.179 55.000 0.00 0.00 0.00 2.90 F
2963 3360 1.131928 GGGTGGTAGGTGGGTGACTT 61.132 60.000 0.00 0.00 0.00 3.01 F
3008 3483 1.281287 AGTCGTAGTACAGAGGCAGGA 59.719 52.381 0.38 0.00 0.00 3.86 F
4691 5214 0.660488 GCGTGTTCCACAACATCACA 59.340 50.000 0.00 0.00 44.47 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2493 2840 0.107654 CTACAGGGCAAGTACAGGGC 60.108 60.000 0.00 0.00 0.00 5.19 R
2622 3009 0.179020 CTGATTCGGGGCAGGCATTA 60.179 55.000 0.00 0.00 0.00 1.90 R
3693 4192 0.034767 CACAGGTGGTCAGATGGCAT 60.035 55.000 0.00 0.00 0.00 4.40 R
4082 4602 1.654954 GCGAGTAGTCGGAGAAGGCA 61.655 60.000 20.94 0.00 46.91 4.75 R
4289 4809 2.048222 ACGACGATGTGCACCAGG 60.048 61.111 15.69 5.45 0.00 4.45 R
4421 4941 3.893326 TCCGAGATGAAAATCTGAGCA 57.107 42.857 0.00 0.00 0.00 4.26 R
4950 5473 5.073691 AGGTAGATGGATGGAATTACTTGGG 59.926 44.000 0.00 0.00 0.00 4.12 R
6007 7551 0.246360 ATCCACACATTCGTCTCGCA 59.754 50.000 0.00 0.00 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 250 7.427989 ACATGCCATTTCTAATCCTTGAATT 57.572 32.000 0.00 0.00 0.00 2.17
388 391 7.064134 TGGTAATTGTCAAGTTGCGTATAAGAG 59.936 37.037 0.00 0.00 0.00 2.85
512 516 8.006564 AGATTACAACATGATAAACATCCCCAT 58.993 33.333 0.00 0.00 37.07 4.00
602 607 1.210155 GTGGAGATGTTTGCACCGC 59.790 57.895 0.00 0.00 33.80 5.68
608 613 0.984109 GATGTTTGCACCGCGAATTG 59.016 50.000 8.23 2.28 34.24 2.32
1082 1144 3.474570 CCGGAGAGGCAAGAGGGG 61.475 72.222 0.00 0.00 0.00 4.79
1083 1145 2.685380 CGGAGAGGCAAGAGGGGT 60.685 66.667 0.00 0.00 0.00 4.95
1084 1146 2.993853 GGAGAGGCAAGAGGGGTG 59.006 66.667 0.00 0.00 0.00 4.61
1085 1147 2.270527 GAGAGGCAAGAGGGGTGC 59.729 66.667 0.00 0.00 41.45 5.01
1126 1188 2.903855 GTCCGTCGGCCCGATCTA 60.904 66.667 10.04 0.00 38.42 1.98
1199 1272 6.560253 AATCCATCGCTTGTATGGTTAATC 57.440 37.500 0.00 0.00 43.72 1.75
1242 1315 3.813596 ATTCGTGCGGAATCTGCC 58.186 55.556 12.01 2.15 41.57 4.85
1246 1319 2.045926 GTGCGGAATCTGCCCTGT 60.046 61.111 12.01 0.00 0.00 4.00
1289 1362 4.162690 GGCGAGTAGGCAGGGTGG 62.163 72.222 0.00 0.00 45.92 4.61
1376 1450 0.037790 ACTCGAGAGGCTGCTGTTTC 60.038 55.000 21.68 0.00 0.00 2.78
1383 1458 1.979155 GGCTGCTGTTTCTTCCCCC 60.979 63.158 0.00 0.00 0.00 5.40
1431 1506 2.813908 GTCCGTCAATTCGCCGCT 60.814 61.111 0.00 0.00 0.00 5.52
1513 1834 1.079405 TTTCGCCCGAGGTAGCAAG 60.079 57.895 0.00 0.00 0.00 4.01
1572 1893 6.199154 GCTGATGCGCGTATATAGACATTTAT 59.801 38.462 19.94 0.00 0.00 1.40
1580 1901 7.586403 CGTATATAGACATTTATACGCGGAC 57.414 40.000 12.47 0.00 43.59 4.79
1608 1929 2.133553 CATCTTGCTACCAGATCTGCG 58.866 52.381 17.76 12.75 0.00 5.18
1778 2106 6.112058 TGTTAGAAAAGCTGCACCAAAATTT 58.888 32.000 1.02 0.00 0.00 1.82
1793 2121 5.011635 ACCAAAATTTTAGTCCCCATGTGTC 59.988 40.000 2.44 0.00 0.00 3.67
1794 2122 5.245977 CCAAAATTTTAGTCCCCATGTGTCT 59.754 40.000 2.44 0.00 0.00 3.41
1795 2123 5.982890 AAATTTTAGTCCCCATGTGTCTG 57.017 39.130 0.00 0.00 0.00 3.51
1812 2140 5.885352 TGTGTCTGTTCTTTTGATGAAGGAA 59.115 36.000 0.00 0.00 31.66 3.36
1858 2194 7.338196 TGAGAAACACAAACAGAATTACTCCAA 59.662 33.333 0.00 0.00 0.00 3.53
1859 2195 8.062065 AGAAACACAAACAGAATTACTCCAAA 57.938 30.769 0.00 0.00 0.00 3.28
1868 2204 7.687941 ACAGAATTACTCCAAATCGTGATTT 57.312 32.000 2.04 2.04 41.33 2.17
1883 2219 2.292292 GTGATTTGGCCGTAACAACACT 59.708 45.455 0.00 0.00 0.00 3.55
1890 2226 2.414957 GGCCGTAACAACACTAATTGCC 60.415 50.000 0.00 0.00 32.47 4.52
1891 2227 2.726681 GCCGTAACAACACTAATTGCCG 60.727 50.000 0.00 0.00 32.47 5.69
1892 2228 2.159626 CCGTAACAACACTAATTGCCGG 60.160 50.000 0.00 0.00 34.46 6.13
1893 2229 2.737783 CGTAACAACACTAATTGCCGGA 59.262 45.455 5.05 0.00 32.47 5.14
1894 2230 3.372822 CGTAACAACACTAATTGCCGGAT 59.627 43.478 5.05 0.00 32.47 4.18
1896 2232 3.848272 ACAACACTAATTGCCGGATTG 57.152 42.857 5.05 0.00 32.47 2.67
1925 2263 3.902881 AACACAAATTGGCCTTTGACA 57.097 38.095 20.92 0.00 38.17 3.58
1935 2273 2.531522 GCCTTTGACAACAGGCAATT 57.468 45.000 24.54 0.00 45.99 2.32
1940 2278 5.118286 CCTTTGACAACAGGCAATTTTTCT 58.882 37.500 0.00 0.00 0.00 2.52
1948 2286 6.429385 ACAACAGGCAATTTTTCTGTTTTCAA 59.571 30.769 12.46 0.00 45.89 2.69
1956 2294 7.626028 GCAATTTTTCTGTTTTCAAAGAGGCAA 60.626 33.333 0.00 0.00 30.85 4.52
1957 2295 7.920160 ATTTTTCTGTTTTCAAAGAGGCAAA 57.080 28.000 0.00 0.00 30.85 3.68
2493 2840 1.091771 CACCTTGGATAGCACCGCAG 61.092 60.000 0.00 0.00 0.00 5.18
2577 2931 2.587777 TCTGGTCCTCCTCCTAATCACT 59.412 50.000 0.00 0.00 34.23 3.41
2585 2939 0.312416 CTCCTAATCACTCGGAGCCG 59.688 60.000 4.58 1.74 38.05 5.52
2619 3006 4.341235 TCCTAATCAGTCGTGTAATCCAGG 59.659 45.833 0.00 0.00 0.00 4.45
2620 3007 3.543680 AATCAGTCGTGTAATCCAGGG 57.456 47.619 0.00 0.00 0.00 4.45
2622 3009 2.253610 TCAGTCGTGTAATCCAGGGTT 58.746 47.619 0.00 0.00 0.00 4.11
2623 3010 3.433343 TCAGTCGTGTAATCCAGGGTTA 58.567 45.455 0.00 0.00 0.00 2.85
2624 3011 3.833650 TCAGTCGTGTAATCCAGGGTTAA 59.166 43.478 0.00 0.00 0.00 2.01
2625 3012 4.468510 TCAGTCGTGTAATCCAGGGTTAAT 59.531 41.667 0.00 0.00 0.00 1.40
2626 3013 4.570772 CAGTCGTGTAATCCAGGGTTAATG 59.429 45.833 0.00 0.00 0.00 1.90
2627 3014 3.311596 GTCGTGTAATCCAGGGTTAATGC 59.688 47.826 0.00 0.00 0.00 3.56
2628 3015 2.616842 CGTGTAATCCAGGGTTAATGCC 59.383 50.000 0.00 0.00 0.00 4.40
2629 3016 3.684413 CGTGTAATCCAGGGTTAATGCCT 60.684 47.826 0.00 0.00 0.00 4.75
2630 3017 3.632145 GTGTAATCCAGGGTTAATGCCTG 59.368 47.826 0.00 0.00 0.00 4.85
2631 3018 1.780503 AATCCAGGGTTAATGCCTGC 58.219 50.000 0.00 0.00 0.00 4.85
2632 3019 0.106015 ATCCAGGGTTAATGCCTGCC 60.106 55.000 0.00 0.00 0.00 4.85
2633 3020 1.758122 CCAGGGTTAATGCCTGCCC 60.758 63.158 0.00 0.00 41.36 5.36
2634 3021 1.758122 CAGGGTTAATGCCTGCCCC 60.758 63.158 0.00 0.00 41.99 5.80
2635 3022 2.833121 GGGTTAATGCCTGCCCCG 60.833 66.667 0.00 0.00 35.18 5.73
2636 3023 2.274104 GGTTAATGCCTGCCCCGA 59.726 61.111 0.00 0.00 0.00 5.14
2637 3024 1.379309 GGTTAATGCCTGCCCCGAA 60.379 57.895 0.00 0.00 0.00 4.30
2638 3025 0.755327 GGTTAATGCCTGCCCCGAAT 60.755 55.000 0.00 0.00 0.00 3.34
2639 3026 0.668535 GTTAATGCCTGCCCCGAATC 59.331 55.000 0.00 0.00 0.00 2.52
2640 3027 0.257328 TTAATGCCTGCCCCGAATCA 59.743 50.000 0.00 0.00 0.00 2.57
2641 3028 0.179020 TAATGCCTGCCCCGAATCAG 60.179 55.000 0.00 0.00 0.00 2.90
2642 3029 4.802051 TGCCTGCCCCGAATCAGC 62.802 66.667 0.00 0.00 0.00 4.26
2643 3030 4.802051 GCCTGCCCCGAATCAGCA 62.802 66.667 0.00 0.00 34.79 4.41
2644 3031 2.194056 CCTGCCCCGAATCAGCAT 59.806 61.111 0.00 0.00 35.64 3.79
2645 3032 2.191513 CCTGCCCCGAATCAGCATG 61.192 63.158 0.00 0.00 35.64 4.06
2646 3033 2.829914 TGCCCCGAATCAGCATGC 60.830 61.111 10.51 10.51 34.76 4.06
2647 3034 3.957535 GCCCCGAATCAGCATGCG 61.958 66.667 13.01 7.64 34.76 4.73
2713 3100 3.856638 GCAAAGTTGAACATCGCAATCCA 60.857 43.478 0.00 0.00 0.00 3.41
2774 3161 4.908730 GCTTCTTTTTCTCTCTTGAAAGCG 59.091 41.667 0.00 0.00 37.27 4.68
2776 3163 5.914085 TCTTTTTCTCTCTTGAAAGCGAG 57.086 39.130 4.06 4.06 38.81 5.03
2787 3174 5.411781 TCTTGAAAGCGAGAAGGAGATTAC 58.588 41.667 0.00 0.00 31.51 1.89
2794 3181 2.159226 CGAGAAGGAGATTACGCACCTT 60.159 50.000 0.00 0.00 44.08 3.50
2858 3245 1.301087 CGCCCTGTTCAACGTGGTA 60.301 57.895 0.00 0.00 0.00 3.25
2963 3360 1.131928 GGGTGGTAGGTGGGTGACTT 61.132 60.000 0.00 0.00 0.00 3.01
2979 3376 4.383552 GGTGACTTGGCTCTGACTGAATAT 60.384 45.833 0.00 0.00 0.00 1.28
2980 3377 5.181748 GTGACTTGGCTCTGACTGAATATT 58.818 41.667 0.00 0.00 0.00 1.28
2981 3378 6.341316 GTGACTTGGCTCTGACTGAATATTA 58.659 40.000 0.00 0.00 0.00 0.98
2986 3383 5.858381 TGGCTCTGACTGAATATTATGTCC 58.142 41.667 14.11 4.13 0.00 4.02
3005 3480 2.502947 TCCTAGTCGTAGTACAGAGGCA 59.497 50.000 0.38 0.00 0.00 4.75
3007 3482 1.752683 AGTCGTAGTACAGAGGCAGG 58.247 55.000 0.38 0.00 0.00 4.85
3008 3483 1.281287 AGTCGTAGTACAGAGGCAGGA 59.719 52.381 0.38 0.00 0.00 3.86
3009 3484 1.671845 GTCGTAGTACAGAGGCAGGAG 59.328 57.143 0.38 0.00 0.00 3.69
3010 3485 1.558294 TCGTAGTACAGAGGCAGGAGA 59.442 52.381 0.38 0.00 0.00 3.71
3113 3595 7.878644 GGTAGGATTTGATCACCTTATCTTACC 59.121 40.741 20.03 20.03 39.31 2.85
3120 3602 8.888836 TTGATCACCTTATCTTACCGGATATA 57.111 34.615 9.46 0.00 0.00 0.86
3122 3604 8.914011 TGATCACCTTATCTTACCGGATATATG 58.086 37.037 9.46 2.65 0.00 1.78
3123 3605 8.840200 ATCACCTTATCTTACCGGATATATGT 57.160 34.615 9.46 0.00 0.00 2.29
3132 3614 6.598850 TCTTACCGGATATATGTATGCGTGTA 59.401 38.462 19.08 16.76 46.69 2.90
3174 3657 3.004315 TGCCTCATTTTGAACGAGTTTCC 59.996 43.478 0.00 0.00 32.58 3.13
3205 3692 7.687592 GCATATCCTTGCTTTAACCATTGGATT 60.688 37.037 10.37 2.87 39.57 3.01
3207 3694 4.222588 TCCTTGCTTTAACCATTGGATTGG 59.777 41.667 10.37 0.00 42.82 3.16
3208 3695 4.222588 CCTTGCTTTAACCATTGGATTGGA 59.777 41.667 10.37 0.00 39.25 3.53
3209 3696 5.104817 CCTTGCTTTAACCATTGGATTGGAT 60.105 40.000 10.37 0.00 39.25 3.41
3210 3697 5.596836 TGCTTTAACCATTGGATTGGATC 57.403 39.130 10.37 0.00 39.25 3.36
3211 3698 5.022122 TGCTTTAACCATTGGATTGGATCA 58.978 37.500 10.37 0.00 39.25 2.92
3269 3756 3.189287 GCCGATTTGTCTGTGATTGTTCT 59.811 43.478 0.00 0.00 0.00 3.01
3693 4192 8.517056 TGATAGAGTACAACATAACTTCGTTCA 58.483 33.333 0.00 0.00 0.00 3.18
3716 4215 1.446907 CATCTGACCACCTGTGCTTC 58.553 55.000 0.00 0.00 0.00 3.86
3947 4467 4.498520 CTGGTCATCGTCGCGGCT 62.499 66.667 9.90 0.00 0.00 5.52
4421 4941 2.985282 TACAACGACCGGGAGCGT 60.985 61.111 6.32 10.17 43.39 5.07
4442 4962 4.125703 GTGCTCAGATTTTCATCTCGGAT 58.874 43.478 0.00 0.00 37.71 4.18
4691 5214 0.660488 GCGTGTTCCACAACATCACA 59.340 50.000 0.00 0.00 44.47 3.58
4847 5370 1.419387 GAGGCCAAGGAGTGCATCTAT 59.581 52.381 5.01 0.00 35.54 1.98
4950 5473 6.378280 AGAAAGAACTCAGAGAAGAGATCCTC 59.622 42.308 3.79 0.00 37.95 3.71
5059 5582 1.406069 CCGTGCCAATGCTAGAAGAGT 60.406 52.381 0.00 0.00 38.71 3.24
5233 5756 2.093890 TCATTGCATTGGCGTCATCTT 58.906 42.857 8.64 0.00 45.35 2.40
5267 5797 5.914635 GTGTCATGTTGTTGTAGACCATTTG 59.085 40.000 0.00 0.00 0.00 2.32
5368 5898 6.819397 TCTCGTGACTTTATTTCTCTCTGA 57.181 37.500 0.00 0.00 0.00 3.27
5388 5918 3.015327 GAGAGTGGATGATTGCTTGCTT 58.985 45.455 0.00 0.00 0.00 3.91
5419 5949 0.393077 CGACCAAGGTTGTCCACTCT 59.607 55.000 0.00 0.00 35.89 3.24
5430 5960 0.681733 GTCCACTCTGTTGGAGCTCA 59.318 55.000 17.19 0.00 46.75 4.26
5502 6032 2.256445 GCATCACGCAAAATAACCGT 57.744 45.000 0.00 0.00 41.79 4.83
5507 6037 3.509740 TCACGCAAAATAACCGTCGATA 58.490 40.909 0.00 0.00 32.18 2.92
5593 7106 3.567530 TGTATATTTCGACCCGCGTATG 58.432 45.455 4.92 0.00 41.80 2.39
5601 7114 0.246635 GACCCGCGTATGCCATATCT 59.753 55.000 4.92 0.00 38.08 1.98
5643 7156 7.447545 GGTTTTGTAGTTTCCTCTATCTTTGGT 59.552 37.037 0.00 0.00 0.00 3.67
5652 7165 3.115390 CTCTATCTTTGGTGGGAGGGAA 58.885 50.000 0.00 0.00 0.00 3.97
5657 7170 3.935172 TCTTTGGTGGGAGGGAATTTTT 58.065 40.909 0.00 0.00 0.00 1.94
5658 7171 5.081315 TCTTTGGTGGGAGGGAATTTTTA 57.919 39.130 0.00 0.00 0.00 1.52
5668 7181 2.560981 AGGGAATTTTTAGCACCAACCG 59.439 45.455 0.00 0.00 0.00 4.44
5705 7218 2.034879 CCACTAGCGTTGCCACCTG 61.035 63.158 0.00 0.00 0.00 4.00
5706 7219 2.358737 ACTAGCGTTGCCACCTGC 60.359 61.111 0.00 0.00 41.77 4.85
5713 7226 2.033141 TTGCCACCTGCTGAGCTC 59.967 61.111 6.82 6.82 42.00 4.09
5719 7232 1.005340 CACCTGCTGAGCTCGATTTC 58.995 55.000 9.64 0.00 0.00 2.17
5729 7242 2.213499 AGCTCGATTTCGGCCAAATAG 58.787 47.619 2.24 8.74 40.29 1.73
5738 7251 2.906354 TCGGCCAAATAGAAGAGAAGC 58.094 47.619 2.24 0.00 0.00 3.86
5761 7274 2.496817 CCAGCCAGAGGAGCGTAC 59.503 66.667 0.00 0.00 34.64 3.67
5773 7286 1.945394 GGAGCGTACGATACTGAGGAA 59.055 52.381 21.65 0.00 0.00 3.36
5778 7291 3.664798 GCGTACGATACTGAGGAATCGAG 60.665 52.174 21.65 14.04 46.08 4.04
5802 7315 4.838486 CAGGAGCTCGACCGCGTC 62.838 72.222 7.83 1.63 38.98 5.19
5827 7340 3.437795 CCTTTGGGCTGCTGCTCG 61.438 66.667 15.64 0.00 44.15 5.03
5828 7341 4.112341 CTTTGGGCTGCTGCTCGC 62.112 66.667 15.64 3.48 44.15 5.03
5829 7342 4.648626 TTTGGGCTGCTGCTCGCT 62.649 61.111 15.64 0.00 44.15 4.93
5899 7412 1.790387 GCAGCAGTAACTTGCCTCG 59.210 57.895 0.00 0.00 45.18 4.63
5929 7442 2.603473 AGGCTGCCGTAGACACCA 60.603 61.111 13.96 0.00 36.64 4.17
5947 7460 0.460987 CACTCGATCTGGTGAAGGCC 60.461 60.000 0.00 0.00 35.69 5.19
5999 7543 1.471684 GAATCCTGCACTTCTGCTTGG 59.528 52.381 0.00 0.00 44.57 3.61
6030 7574 2.671070 CGAGACGAATGTGTGGATGTGA 60.671 50.000 0.00 0.00 0.00 3.58
6031 7575 3.525537 GAGACGAATGTGTGGATGTGAT 58.474 45.455 0.00 0.00 0.00 3.06
6032 7576 3.264947 AGACGAATGTGTGGATGTGATG 58.735 45.455 0.00 0.00 0.00 3.07
6033 7577 3.002791 GACGAATGTGTGGATGTGATGT 58.997 45.455 0.00 0.00 0.00 3.06
6034 7578 2.743664 ACGAATGTGTGGATGTGATGTG 59.256 45.455 0.00 0.00 0.00 3.21
6035 7579 3.002102 CGAATGTGTGGATGTGATGTGA 58.998 45.455 0.00 0.00 0.00 3.58
6036 7580 3.063045 CGAATGTGTGGATGTGATGTGAG 59.937 47.826 0.00 0.00 0.00 3.51
6037 7581 3.986996 ATGTGTGGATGTGATGTGAGA 57.013 42.857 0.00 0.00 0.00 3.27
6039 7583 2.899256 TGTGTGGATGTGATGTGAGAGA 59.101 45.455 0.00 0.00 0.00 3.10
6040 7584 3.056322 TGTGTGGATGTGATGTGAGAGAG 60.056 47.826 0.00 0.00 0.00 3.20
6041 7585 3.194329 GTGTGGATGTGATGTGAGAGAGA 59.806 47.826 0.00 0.00 0.00 3.10
6148 7693 3.574284 TGATTTTTGCGGGATCTGTTG 57.426 42.857 0.00 0.00 0.00 3.33
6159 7704 1.718757 GATCTGTTGTGCCCGATGCC 61.719 60.000 0.00 0.00 40.16 4.40
6160 7705 2.482796 ATCTGTTGTGCCCGATGCCA 62.483 55.000 0.00 0.00 40.16 4.92
6214 7759 5.645929 ACCATATACTGTTTTTGCATGACGA 59.354 36.000 0.00 0.00 0.00 4.20
6231 7776 5.371115 TGACGAATTTTTGTGGGATCTTC 57.629 39.130 0.00 0.00 0.00 2.87
6236 7781 6.940298 ACGAATTTTTGTGGGATCTTCTAGAA 59.060 34.615 4.81 4.81 0.00 2.10
6239 7784 9.578439 GAATTTTTGTGGGATCTTCTAGAATTG 57.422 33.333 5.44 0.00 0.00 2.32
6241 7786 4.842531 TGTGGGATCTTCTAGAATTGCA 57.157 40.909 5.44 0.00 0.00 4.08
6242 7787 4.774124 TGTGGGATCTTCTAGAATTGCAG 58.226 43.478 5.44 0.00 0.00 4.41
6303 7848 4.161565 TCGACACTTATGCAATACTCCCTT 59.838 41.667 0.00 0.00 0.00 3.95
6305 7850 5.220662 CGACACTTATGCAATACTCCCTTTG 60.221 44.000 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.597386 AGAGATCAAAGTTCAATTTTAGCCAC 58.403 34.615 0.00 0.00 0.00 5.01
356 359 5.920273 CGCAACTTGACAATTACCATCTTTT 59.080 36.000 0.00 0.00 0.00 2.27
360 363 4.419522 ACGCAACTTGACAATTACCATC 57.580 40.909 0.00 0.00 0.00 3.51
544 549 9.646427 TGCATATGTATGTTTATATTACTCGCA 57.354 29.630 4.29 0.00 36.11 5.10
569 574 6.690530 ACATCTCCACACAAAAATTATGGTG 58.309 36.000 0.00 0.00 37.29 4.17
780 842 4.779733 ATCCGACGGTGGGGAGCT 62.780 66.667 14.79 0.00 35.40 4.09
1114 1176 2.520982 CAGGGTAGATCGGGCCGA 60.521 66.667 33.10 33.10 41.13 5.54
1199 1272 4.734695 GCGCCAAAGAAAATGAATCTAGGG 60.735 45.833 0.00 0.00 0.00 3.53
1242 1315 2.642700 CAAAACGGCCGGAACAGG 59.357 61.111 31.76 9.81 0.00 4.00
1267 1340 1.690219 CCCTGCCTACTCGCCATTCT 61.690 60.000 0.00 0.00 0.00 2.40
1298 1371 1.002990 GTCGGGAAACGGGATGGTT 60.003 57.895 0.00 0.00 44.45 3.67
1299 1372 2.666812 GTCGGGAAACGGGATGGT 59.333 61.111 0.00 0.00 44.45 3.55
1349 1423 0.395173 AGCCTCTCGAGTTCCTCTCC 60.395 60.000 13.13 0.00 39.84 3.71
1357 1431 0.037790 GAAACAGCAGCCTCTCGAGT 60.038 55.000 13.13 0.00 0.00 4.18
1364 1438 1.075659 GGGGAAGAAACAGCAGCCT 59.924 57.895 0.00 0.00 0.00 4.58
1441 1516 1.681327 GGTCGGAGGTAGGTGCAGA 60.681 63.158 0.00 0.00 0.00 4.26
1513 1834 1.604278 GATTCGTTCTAATGCTGCCCC 59.396 52.381 0.00 0.00 0.00 5.80
1520 1841 1.867233 CAGGGGCGATTCGTTCTAATG 59.133 52.381 8.03 0.00 0.00 1.90
1572 1893 2.613739 GATGCAGCAGAGTCCGCGTA 62.614 60.000 4.92 0.00 0.00 4.42
1608 1929 1.244019 GCCATCCGCACCAATATCCC 61.244 60.000 0.00 0.00 37.47 3.85
1751 2079 4.305989 TGGTGCAGCTTTTCTAACAAAG 57.694 40.909 18.08 0.00 36.91 2.77
1758 2086 6.348498 ACTAAAATTTTGGTGCAGCTTTTCT 58.652 32.000 17.96 2.21 30.28 2.52
1778 2106 3.248024 AGAACAGACACATGGGGACTAA 58.752 45.455 0.00 0.00 0.00 2.24
1793 2121 6.149142 CCTCTCTTCCTTCATCAAAAGAACAG 59.851 42.308 0.00 0.00 0.00 3.16
1794 2122 6.000219 CCTCTCTTCCTTCATCAAAAGAACA 59.000 40.000 0.00 0.00 0.00 3.18
1795 2123 6.148645 GTCCTCTCTTCCTTCATCAAAAGAAC 59.851 42.308 0.00 0.00 0.00 3.01
1812 2140 3.519510 TCAATGAAAATCGGGTCCTCTCT 59.480 43.478 0.00 0.00 0.00 3.10
1858 2194 2.428491 TGTTACGGCCAAATCACGATT 58.572 42.857 2.24 0.00 0.00 3.34
1859 2195 2.102070 TGTTACGGCCAAATCACGAT 57.898 45.000 2.24 0.00 0.00 3.73
1868 2204 2.226912 GCAATTAGTGTTGTTACGGCCA 59.773 45.455 2.24 0.00 0.00 5.36
1891 2227 4.571372 TTTGTGTTACCGGAAACAATCC 57.429 40.909 9.46 0.00 45.57 3.01
1892 2228 5.404066 CCAATTTGTGTTACCGGAAACAATC 59.596 40.000 9.46 0.00 40.85 2.67
1893 2229 5.293560 CCAATTTGTGTTACCGGAAACAAT 58.706 37.500 9.46 0.00 40.85 2.71
1894 2230 4.683832 CCAATTTGTGTTACCGGAAACAA 58.316 39.130 9.46 10.13 40.85 2.83
1896 2232 3.054166 GCCAATTTGTGTTACCGGAAAC 58.946 45.455 9.46 0.46 0.00 2.78
1910 2248 3.473923 CCTGTTGTCAAAGGCCAATTT 57.526 42.857 5.01 0.00 0.00 1.82
1935 2273 5.351189 GCTTTGCCTCTTTGAAAACAGAAAA 59.649 36.000 0.00 0.00 0.00 2.29
1940 2278 3.177997 GGCTTTGCCTCTTTGAAAACA 57.822 42.857 0.73 0.00 46.69 2.83
1964 2302 0.458669 CTAGTCATAACGGCCACGGT 59.541 55.000 2.24 0.00 46.48 4.83
1994 2332 3.304190 GCCGTGTTACGTTGGAAAAAGAT 60.304 43.478 0.00 0.00 40.58 2.40
2008 2346 4.752879 GCTCCGCCTGCCGTGTTA 62.753 66.667 0.00 0.00 34.38 2.41
2493 2840 0.107654 CTACAGGGCAAGTACAGGGC 60.108 60.000 0.00 0.00 0.00 5.19
2585 2939 0.833287 TGATTAGGACTGCTGGCTCC 59.167 55.000 0.00 0.00 0.00 4.70
2619 3006 0.755327 ATTCGGGGCAGGCATTAACC 60.755 55.000 0.00 0.00 0.00 2.85
2620 3007 0.668535 GATTCGGGGCAGGCATTAAC 59.331 55.000 0.00 0.00 0.00 2.01
2622 3009 0.179020 CTGATTCGGGGCAGGCATTA 60.179 55.000 0.00 0.00 0.00 1.90
2623 3010 1.454479 CTGATTCGGGGCAGGCATT 60.454 57.895 0.00 0.00 0.00 3.56
2624 3011 2.194056 CTGATTCGGGGCAGGCAT 59.806 61.111 0.00 0.00 0.00 4.40
2625 3012 4.802051 GCTGATTCGGGGCAGGCA 62.802 66.667 0.00 0.00 32.83 4.75
2626 3013 4.802051 TGCTGATTCGGGGCAGGC 62.802 66.667 0.00 0.00 32.83 4.85
2627 3014 2.191513 CATGCTGATTCGGGGCAGG 61.192 63.158 0.00 0.00 39.38 4.85
2628 3015 2.842256 GCATGCTGATTCGGGGCAG 61.842 63.158 11.37 0.00 39.38 4.85
2629 3016 2.829914 GCATGCTGATTCGGGGCA 60.830 61.111 11.37 0.00 40.32 5.36
2630 3017 3.957535 CGCATGCTGATTCGGGGC 61.958 66.667 17.13 0.00 0.00 5.80
2631 3018 2.203056 TCGCATGCTGATTCGGGG 60.203 61.111 17.13 0.00 0.00 5.73
2632 3019 1.493950 GACTCGCATGCTGATTCGGG 61.494 60.000 17.13 0.68 0.00 5.14
2633 3020 1.493950 GGACTCGCATGCTGATTCGG 61.494 60.000 17.13 5.68 0.00 4.30
2634 3021 0.529337 AGGACTCGCATGCTGATTCG 60.529 55.000 17.13 6.01 0.00 3.34
2635 3022 2.515926 TAGGACTCGCATGCTGATTC 57.484 50.000 17.13 16.45 0.00 2.52
2636 3023 2.988010 TTAGGACTCGCATGCTGATT 57.012 45.000 17.13 8.96 0.00 2.57
2637 3024 2.366590 TGATTAGGACTCGCATGCTGAT 59.633 45.455 17.13 0.00 0.00 2.90
2638 3025 1.756538 TGATTAGGACTCGCATGCTGA 59.243 47.619 17.13 13.50 0.00 4.26
2639 3026 2.229675 TGATTAGGACTCGCATGCTG 57.770 50.000 17.13 10.94 0.00 4.41
2640 3027 2.988010 TTGATTAGGACTCGCATGCT 57.012 45.000 17.13 0.00 0.00 3.79
2641 3028 3.133691 TGATTGATTAGGACTCGCATGC 58.866 45.455 7.91 7.91 0.00 4.06
2642 3029 3.186001 GCTGATTGATTAGGACTCGCATG 59.814 47.826 0.00 0.00 0.00 4.06
2643 3030 3.070734 AGCTGATTGATTAGGACTCGCAT 59.929 43.478 0.00 0.00 0.00 4.73
2644 3031 2.432146 AGCTGATTGATTAGGACTCGCA 59.568 45.455 0.00 0.00 0.00 5.10
2645 3032 2.799412 CAGCTGATTGATTAGGACTCGC 59.201 50.000 8.42 0.00 0.00 5.03
2646 3033 3.068732 TCCAGCTGATTGATTAGGACTCG 59.931 47.826 17.39 0.00 0.00 4.18
2647 3034 4.502950 CCTCCAGCTGATTGATTAGGACTC 60.503 50.000 17.39 0.00 0.00 3.36
2713 3100 4.510167 AAACCATAATACAGGCAGCTCT 57.490 40.909 0.00 0.00 0.00 4.09
2774 3161 3.528597 AAGGTGCGTAATCTCCTTCTC 57.471 47.619 0.00 0.00 35.70 2.87
2776 3163 3.335579 ACAAAGGTGCGTAATCTCCTTC 58.664 45.455 0.00 0.00 39.05 3.46
2787 3174 1.647545 ATGCCATCGACAAAGGTGCG 61.648 55.000 0.00 0.00 0.00 5.34
2794 3181 2.159114 TCGATTCAGATGCCATCGACAA 60.159 45.455 10.92 0.00 42.91 3.18
2815 3202 2.005370 TGAGACGGTAGGTGGACTTT 57.995 50.000 0.00 0.00 0.00 2.66
2858 3245 2.825861 AAACGAGGTACCACGTGATT 57.174 45.000 33.19 23.07 40.97 2.57
2919 3316 3.625897 CGAGCACACCTCCCCACA 61.626 66.667 0.00 0.00 37.27 4.17
2963 3360 5.604231 AGGACATAATATTCAGTCAGAGCCA 59.396 40.000 17.14 0.00 32.79 4.75
2979 3376 6.286758 CCTCTGTACTACGACTAGGACATAA 58.713 44.000 0.00 0.00 42.13 1.90
2980 3377 5.741383 GCCTCTGTACTACGACTAGGACATA 60.741 48.000 0.00 0.00 42.13 2.29
2981 3378 4.706035 CCTCTGTACTACGACTAGGACAT 58.294 47.826 0.00 0.00 42.13 3.06
2986 3383 2.873472 CCTGCCTCTGTACTACGACTAG 59.127 54.545 0.00 0.00 0.00 2.57
3005 3480 4.500887 CGAATACGTCTCTCTCTCTCTCCT 60.501 50.000 0.00 0.00 34.56 3.69
3007 3482 4.966850 CGAATACGTCTCTCTCTCTCTC 57.033 50.000 0.00 0.00 34.56 3.20
3055 3537 3.537580 TGGACGGTCAAATATAAGCCAC 58.462 45.455 10.76 0.00 0.00 5.01
3113 3595 5.004061 CGGTTTACACGCATACATATATCCG 59.996 44.000 0.00 0.00 0.00 4.18
3120 3602 2.093869 AGTCCGGTTTACACGCATACAT 60.094 45.455 0.00 0.00 0.00 2.29
3122 3604 1.922545 GAGTCCGGTTTACACGCATAC 59.077 52.381 0.00 0.00 0.00 2.39
3123 3605 1.467883 CGAGTCCGGTTTACACGCATA 60.468 52.381 0.00 0.00 0.00 3.14
3207 3694 3.452627 ACACAGGGATAAGGTGACTGATC 59.547 47.826 0.00 0.00 46.36 2.92
3208 3695 3.454858 ACACAGGGATAAGGTGACTGAT 58.545 45.455 0.00 0.00 42.68 2.90
3209 3696 2.902608 ACACAGGGATAAGGTGACTGA 58.097 47.619 0.00 0.00 42.68 3.41
3210 3697 3.703001 AACACAGGGATAAGGTGACTG 57.297 47.619 0.00 0.00 42.68 3.51
3312 3799 2.330372 CCGCAGCTGCTTCACATGT 61.330 57.895 34.22 0.00 39.32 3.21
3517 4004 0.892358 GGAAAACACGAGGGGGTTCC 60.892 60.000 0.00 0.00 0.00 3.62
3518 4005 0.109913 AGGAAAACACGAGGGGGTTC 59.890 55.000 0.00 0.00 0.00 3.62
3519 4006 0.554305 AAGGAAAACACGAGGGGGTT 59.446 50.000 0.00 0.00 0.00 4.11
3693 4192 0.034767 CACAGGTGGTCAGATGGCAT 60.035 55.000 0.00 0.00 0.00 4.40
3716 4215 3.242518 CATGATGCTGCAGACAACAAAG 58.757 45.455 20.43 12.34 0.00 2.77
4082 4602 1.654954 GCGAGTAGTCGGAGAAGGCA 61.655 60.000 20.94 0.00 46.91 4.75
4289 4809 2.048222 ACGACGATGTGCACCAGG 60.048 61.111 15.69 5.45 0.00 4.45
4373 4893 4.329545 GGGTCGAAGTGGCAGGCA 62.330 66.667 0.00 0.00 0.00 4.75
4421 4941 3.893326 TCCGAGATGAAAATCTGAGCA 57.107 42.857 0.00 0.00 0.00 4.26
4950 5473 5.073691 AGGTAGATGGATGGAATTACTTGGG 59.926 44.000 0.00 0.00 0.00 4.12
5059 5582 1.490490 ACTCTTCCTTGCACCACTCAA 59.510 47.619 0.00 0.00 0.00 3.02
5233 5756 3.387091 CATGACACGGACGGGGGA 61.387 66.667 0.00 0.00 0.00 4.81
5267 5797 3.942748 TCAGTTATTCCGCCATAAACACC 59.057 43.478 0.00 0.00 0.00 4.16
5326 5856 5.577164 ACGAGAAAGAACATCCATCTAAACG 59.423 40.000 0.00 0.00 0.00 3.60
5329 5859 6.071334 AGTCACGAGAAAGAACATCCATCTAA 60.071 38.462 0.00 0.00 0.00 2.10
5368 5898 2.753452 CAAGCAAGCAATCATCCACTCT 59.247 45.455 0.00 0.00 0.00 3.24
5439 5969 3.883489 GAGTTGCTCTTACCACACCTTTT 59.117 43.478 0.00 0.00 0.00 2.27
5449 5979 5.837586 GCATATGCTAGAGTTGCTCTTAC 57.162 43.478 20.64 0.00 41.50 2.34
5483 6013 2.173964 GACGGTTATTTTGCGTGATGC 58.826 47.619 0.00 0.00 46.70 3.91
5488 6018 4.146961 CGTATATCGACGGTTATTTTGCGT 59.853 41.667 0.00 0.00 42.86 5.24
5489 6019 4.611516 CGTATATCGACGGTTATTTTGCG 58.388 43.478 0.00 0.00 42.86 4.85
5500 6030 3.681417 TGTCCTGATACCGTATATCGACG 59.319 47.826 0.00 0.00 42.86 5.12
5502 6032 6.638096 TTTTGTCCTGATACCGTATATCGA 57.362 37.500 0.00 0.00 42.86 3.59
5562 6092 1.270094 CGAAATATACAGCTCCCCGCA 60.270 52.381 0.00 0.00 42.61 5.69
5563 6093 1.000506 TCGAAATATACAGCTCCCCGC 59.999 52.381 0.00 0.00 39.57 6.13
5564 6094 2.609737 GGTCGAAATATACAGCTCCCCG 60.610 54.545 0.00 0.00 0.00 5.73
5593 7106 6.921857 CCATGATGAAAAACTGAAGATATGGC 59.078 38.462 0.00 0.00 0.00 4.40
5601 7114 8.474025 ACTACAAAACCATGATGAAAAACTGAA 58.526 29.630 0.00 0.00 0.00 3.02
5643 7156 2.110899 TGGTGCTAAAAATTCCCTCCCA 59.889 45.455 0.00 0.00 0.00 4.37
5652 7165 1.544246 GGAGCGGTTGGTGCTAAAAAT 59.456 47.619 0.00 0.00 44.18 1.82
5657 7170 4.077184 CGGGAGCGGTTGGTGCTA 62.077 66.667 0.00 0.00 44.18 3.49
5705 7218 2.529619 GGCCGAAATCGAGCTCAGC 61.530 63.158 15.40 4.20 43.02 4.26
5706 7219 0.740868 TTGGCCGAAATCGAGCTCAG 60.741 55.000 15.40 6.88 43.02 3.35
5713 7226 4.119862 TCTCTTCTATTTGGCCGAAATCG 58.880 43.478 10.16 7.54 35.74 3.34
5719 7232 1.594862 CGCTTCTCTTCTATTTGGCCG 59.405 52.381 0.00 0.00 0.00 6.13
5729 7242 1.743252 CTGGCCACCGCTTCTCTTC 60.743 63.158 0.00 0.00 34.44 2.87
5761 7274 1.400371 CCGCTCGATTCCTCAGTATCG 60.400 57.143 0.00 0.00 42.66 2.92
5773 7286 3.222855 CTCCTGCTCCCGCTCGAT 61.223 66.667 0.00 0.00 36.97 3.59
5850 7363 3.019003 GCTTGTGGCCGAGCTCCTA 62.019 63.158 15.90 0.00 43.68 2.94
5880 7393 1.790387 GAGGCAAGTTACTGCTGCG 59.210 57.895 3.37 0.00 42.25 5.18
5908 7421 2.351244 TGTCTACGGCAGCCTCCTG 61.351 63.158 10.54 0.00 42.13 3.86
5929 7442 1.901085 GGCCTTCACCAGATCGAGT 59.099 57.895 0.00 0.00 0.00 4.18
5954 7467 3.917760 GCCTCCACCGGATCGAGG 61.918 72.222 23.48 23.48 45.12 4.63
5963 7507 0.988678 ATTCTACAGGGGCCTCCACC 60.989 60.000 0.00 0.00 38.24 4.61
5973 7517 3.529533 CAGAAGTGCAGGATTCTACAGG 58.470 50.000 8.09 0.00 34.04 4.00
6007 7551 0.246360 ATCCACACATTCGTCTCGCA 59.754 50.000 0.00 0.00 0.00 5.10
6014 7558 3.002102 TCACATCACATCCACACATTCG 58.998 45.455 0.00 0.00 0.00 3.34
6030 7574 2.630889 TTGGGTCCTCTCTCTCACAT 57.369 50.000 0.00 0.00 0.00 3.21
6031 7575 2.630889 ATTGGGTCCTCTCTCTCACA 57.369 50.000 0.00 0.00 0.00 3.58
6032 7576 2.169561 GGAATTGGGTCCTCTCTCTCAC 59.830 54.545 0.00 0.00 34.56 3.51
6033 7577 2.225624 TGGAATTGGGTCCTCTCTCTCA 60.226 50.000 0.00 0.00 38.62 3.27
6034 7578 2.472029 TGGAATTGGGTCCTCTCTCTC 58.528 52.381 0.00 0.00 38.62 3.20
6035 7579 2.649742 TGGAATTGGGTCCTCTCTCT 57.350 50.000 0.00 0.00 38.62 3.10
6036 7580 3.457749 AGATTGGAATTGGGTCCTCTCTC 59.542 47.826 0.00 0.00 38.62 3.20
6037 7581 3.468850 AGATTGGAATTGGGTCCTCTCT 58.531 45.455 0.00 0.00 38.62 3.10
6039 7583 7.964293 AGTATATAGATTGGAATTGGGTCCTCT 59.036 37.037 0.00 0.00 38.62 3.69
6040 7584 8.152023 AGTATATAGATTGGAATTGGGTCCTC 57.848 38.462 0.00 0.00 38.62 3.71
6041 7585 9.805204 ATAGTATATAGATTGGAATTGGGTCCT 57.195 33.333 0.00 0.00 38.62 3.85
6083 7628 7.656542 GCCCACTAGTCTATAGTTGAATTTACC 59.343 40.741 0.00 0.00 0.00 2.85
6121 7666 2.155279 TCCCGCAAAAATCATCAACGA 58.845 42.857 0.00 0.00 0.00 3.85
6122 7667 2.627863 TCCCGCAAAAATCATCAACG 57.372 45.000 0.00 0.00 0.00 4.10
6159 7704 1.019278 AGGATTTGCAGTACCGCGTG 61.019 55.000 4.92 0.00 33.35 5.34
6160 7705 1.019278 CAGGATTTGCAGTACCGCGT 61.019 55.000 4.92 0.00 33.35 6.01
6163 7708 3.374058 CCTAAACAGGATTTGCAGTACCG 59.626 47.826 0.00 0.00 0.00 4.02
6200 7745 5.676310 CCACAAAAATTCGTCATGCAAAAAC 59.324 36.000 0.00 0.00 0.00 2.43
6214 7759 8.037166 GCAATTCTAGAAGATCCCACAAAAATT 58.963 33.333 11.53 0.00 0.00 1.82
6239 7784 1.069227 CGGAACTGTTTGCCTTACTGC 60.069 52.381 0.00 0.00 0.00 4.40
6241 7786 1.235724 GCGGAACTGTTTGCCTTACT 58.764 50.000 7.28 0.00 0.00 2.24
6242 7787 0.948678 TGCGGAACTGTTTGCCTTAC 59.051 50.000 13.72 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.