Multiple sequence alignment - TraesCS6B01G309300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G309300 chr6B 100.000 2938 0 0 704 3641 554124293 554121356 0.000000e+00 5426.0
1 TraesCS6B01G309300 chr6B 89.775 1379 105 23 1062 2423 554165769 554164410 0.000000e+00 1733.0
2 TraesCS6B01G309300 chr6B 100.000 111 0 0 1 111 554124996 554124886 4.770000e-49 206.0
3 TraesCS6B01G309300 chr6B 85.572 201 14 8 2433 2626 554164175 554163983 2.870000e-46 196.0
4 TraesCS6B01G309300 chr6B 80.952 84 13 3 2767 2849 125404287 125404206 3.040000e-06 63.9
5 TraesCS6B01G309300 chr6D 90.716 2402 148 37 1036 3417 367875748 367878094 0.000000e+00 3131.0
6 TraesCS6B01G309300 chr6D 88.881 1331 122 16 1109 2423 367864762 367866082 0.000000e+00 1615.0
7 TraesCS6B01G309300 chr6D 88.437 1254 127 9 1185 2423 368372309 368371059 0.000000e+00 1496.0
8 TraesCS6B01G309300 chr6D 89.038 1195 118 6 1241 2423 368741040 368739847 0.000000e+00 1469.0
9 TraesCS6B01G309300 chr6D 84.906 212 19 6 2421 2626 367866305 367866509 6.160000e-48 202.0
10 TraesCS6B01G309300 chr6D 92.391 92 5 2 3250 3340 367868899 367868989 2.950000e-26 130.0
11 TraesCS6B01G309300 chr6A 95.780 1564 49 8 1036 2598 508333458 508335005 0.000000e+00 2507.0
12 TraesCS6B01G309300 chr6A 89.647 1333 109 19 1108 2423 508293846 508295166 0.000000e+00 1670.0
13 TraesCS6B01G309300 chr6A 88.751 1209 124 7 1227 2423 509562324 509561116 0.000000e+00 1469.0
14 TraesCS6B01G309300 chr6A 87.186 1272 122 19 1183 2423 509285860 509284599 0.000000e+00 1408.0
15 TraesCS6B01G309300 chr6A 84.136 706 85 8 2817 3496 508335024 508335728 0.000000e+00 658.0
16 TraesCS6B01G309300 chr6A 85.427 199 16 6 2434 2626 508295401 508295592 1.030000e-45 195.0
17 TraesCS6B01G309300 chr6A 81.006 179 26 8 2767 2941 12292177 12292003 6.340000e-28 135.0
18 TraesCS6B01G309300 chr2B 95.077 325 14 2 713 1035 672798768 672798444 9.020000e-141 510.0
19 TraesCS6B01G309300 chr2B 94.881 293 14 1 744 1035 768552769 768553061 1.190000e-124 457.0
20 TraesCS6B01G309300 chr2B 95.238 210 8 2 828 1035 231602067 231601858 7.540000e-87 331.0
21 TraesCS6B01G309300 chr2B 92.825 223 12 4 829 1047 231603029 231603251 1.630000e-83 320.0
22 TraesCS6B01G309300 chr2B 100.000 28 0 0 1 28 768552677 768552704 7.000000e-03 52.8
23 TraesCS6B01G309300 chr7B 96.417 307 9 2 732 1036 726751213 726750907 4.200000e-139 505.0
24 TraesCS6B01G309300 chr4D 94.811 212 10 1 829 1039 417468177 417468388 2.710000e-86 329.0
25 TraesCS6B01G309300 chr2A 95.215 209 8 2 829 1035 164708483 164708691 2.710000e-86 329.0
26 TraesCS6B01G309300 chr2A 79.675 369 58 11 2767 3131 759771988 759772343 2.170000e-62 250.0
27 TraesCS6B01G309300 chr1B 94.444 216 9 3 828 1041 594500539 594500325 2.710000e-86 329.0
28 TraesCS6B01G309300 chr1B 79.200 250 48 4 2802 3048 323322632 323322880 1.740000e-38 171.0
29 TraesCS6B01G309300 chr7A 94.340 212 10 2 829 1038 708314610 708314399 1.260000e-84 324.0
30 TraesCS6B01G309300 chr7A 80.534 262 47 4 2767 3026 193612972 193612713 7.970000e-47 198.0
31 TraesCS6B01G309300 chr5D 78.250 400 78 9 2767 3161 455810069 455809674 7.810000e-62 248.0
32 TraesCS6B01G309300 chr5D 75.966 233 47 9 2767 2995 137061281 137061508 1.070000e-20 111.0
33 TraesCS6B01G309300 chr5D 88.571 70 5 1 34 100 393966118 393966049 8.380000e-12 82.4
34 TraesCS6B01G309300 chr3D 77.027 296 53 9 2764 3056 591861482 591861199 4.870000e-34 156.0
35 TraesCS6B01G309300 chr2D 75.138 362 74 10 2800 3159 296855378 296855031 4.870000e-34 156.0
36 TraesCS6B01G309300 chr1D 77.037 270 61 1 2893 3161 22441605 22441336 1.750000e-33 154.0
37 TraesCS6B01G309300 chr5A 72.766 235 53 10 2767 2995 172461015 172460786 6.520000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G309300 chr6B 554121356 554124996 3640 True 2816.0 5426 100.0000 1 3641 2 chr6B.!!$R2 3640
1 TraesCS6B01G309300 chr6B 554163983 554165769 1786 True 964.5 1733 87.6735 1062 2626 2 chr6B.!!$R3 1564
2 TraesCS6B01G309300 chr6D 367875748 367878094 2346 False 3131.0 3131 90.7160 1036 3417 1 chr6D.!!$F1 2381
3 TraesCS6B01G309300 chr6D 368371059 368372309 1250 True 1496.0 1496 88.4370 1185 2423 1 chr6D.!!$R1 1238
4 TraesCS6B01G309300 chr6D 368739847 368741040 1193 True 1469.0 1469 89.0380 1241 2423 1 chr6D.!!$R2 1182
5 TraesCS6B01G309300 chr6D 367864762 367868989 4227 False 649.0 1615 88.7260 1109 3340 3 chr6D.!!$F2 2231
6 TraesCS6B01G309300 chr6A 508333458 508335728 2270 False 1582.5 2507 89.9580 1036 3496 2 chr6A.!!$F2 2460
7 TraesCS6B01G309300 chr6A 509561116 509562324 1208 True 1469.0 1469 88.7510 1227 2423 1 chr6A.!!$R3 1196
8 TraesCS6B01G309300 chr6A 509284599 509285860 1261 True 1408.0 1408 87.1860 1183 2423 1 chr6A.!!$R2 1240
9 TraesCS6B01G309300 chr6A 508293846 508295592 1746 False 932.5 1670 87.5370 1108 2626 2 chr6A.!!$F1 1518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 962 0.036294 GCCCCAGACTTGGTACTGAC 60.036 60.0 0.0 0.0 43.4 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2947 5263 0.107654 GCGCTGGTTCTTAGGGTCAT 60.108 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203422 CTCCTCGCTCCCTCGGAT 60.203 66.667 0.00 0.00 0.00 4.18
18 19 2.203365 TCCTCGCTCCCTCGGATC 60.203 66.667 0.00 0.00 0.00 3.36
19 20 3.299190 CCTCGCTCCCTCGGATCC 61.299 72.222 0.00 0.00 0.00 3.36
20 21 3.665226 CTCGCTCCCTCGGATCCG 61.665 72.222 28.62 28.62 41.35 4.18
49 50 4.549516 GACGCTACCTCGCCGGTC 62.550 72.222 1.90 0.00 44.93 4.79
51 52 4.554363 CGCTACCTCGCCGGTCTG 62.554 72.222 1.90 0.00 44.93 3.51
52 53 4.874977 GCTACCTCGCCGGTCTGC 62.875 72.222 1.90 3.39 44.93 4.26
53 54 4.208686 CTACCTCGCCGGTCTGCC 62.209 72.222 1.90 0.00 44.93 4.85
54 55 4.753662 TACCTCGCCGGTCTGCCT 62.754 66.667 1.90 0.00 44.93 4.75
61 62 4.436998 CCGGTCTGCCTCCACGTC 62.437 72.222 0.00 0.00 0.00 4.34
62 63 4.778415 CGGTCTGCCTCCACGTCG 62.778 72.222 0.00 0.00 0.00 5.12
63 64 3.681835 GGTCTGCCTCCACGTCGT 61.682 66.667 0.00 0.00 0.00 4.34
64 65 2.126424 GTCTGCCTCCACGTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
65 66 2.596338 TCTGCCTCCACGTCGTCA 60.596 61.111 0.00 0.00 0.00 4.35
66 67 1.977009 TCTGCCTCCACGTCGTCAT 60.977 57.895 0.00 0.00 0.00 3.06
67 68 1.517257 CTGCCTCCACGTCGTCATC 60.517 63.158 0.00 0.00 0.00 2.92
68 69 2.579787 GCCTCCACGTCGTCATCG 60.580 66.667 0.00 0.00 38.55 3.84
69 70 2.875485 CCTCCACGTCGTCATCGT 59.125 61.111 0.00 0.00 42.33 3.73
70 71 1.226323 CCTCCACGTCGTCATCGTC 60.226 63.158 0.00 0.00 39.55 4.20
71 72 1.645704 CCTCCACGTCGTCATCGTCT 61.646 60.000 0.00 0.00 39.55 4.18
72 73 0.247735 CTCCACGTCGTCATCGTCTC 60.248 60.000 0.00 0.00 39.55 3.36
73 74 1.226323 CCACGTCGTCATCGTCTCC 60.226 63.158 0.00 0.00 39.55 3.71
74 75 1.580385 CACGTCGTCATCGTCTCCG 60.580 63.158 0.00 0.00 39.55 4.63
75 76 2.031516 ACGTCGTCATCGTCTCCGT 61.032 57.895 0.00 0.00 36.85 4.69
76 77 1.296722 CGTCGTCATCGTCTCCGTC 60.297 63.158 0.00 0.00 38.33 4.79
77 78 1.296722 GTCGTCATCGTCTCCGTCG 60.297 63.158 0.00 0.00 38.33 5.12
78 79 1.446618 TCGTCATCGTCTCCGTCGA 60.447 57.895 0.00 0.00 41.45 4.20
79 80 1.296722 CGTCATCGTCTCCGTCGAC 60.297 63.158 5.18 5.18 40.07 4.20
80 81 1.062206 GTCATCGTCTCCGTCGACC 59.938 63.158 10.58 0.00 40.07 4.79
81 82 1.078637 TCATCGTCTCCGTCGACCT 60.079 57.895 10.58 0.00 40.07 3.85
82 83 1.088340 TCATCGTCTCCGTCGACCTC 61.088 60.000 10.58 0.00 40.07 3.85
83 84 1.818785 ATCGTCTCCGTCGACCTCC 60.819 63.158 10.58 0.00 40.07 4.30
84 85 2.254737 ATCGTCTCCGTCGACCTCCT 62.255 60.000 10.58 0.00 40.07 3.69
85 86 2.462782 CGTCTCCGTCGACCTCCTC 61.463 68.421 10.58 0.00 0.00 3.71
86 87 2.125229 TCTCCGTCGACCTCCTCG 60.125 66.667 10.58 0.00 44.44 4.63
87 88 3.878519 CTCCGTCGACCTCCTCGC 61.879 72.222 10.58 0.00 42.62 5.03
107 108 2.368192 CCCACTGCCCATCCCCTA 60.368 66.667 0.00 0.00 0.00 3.53
108 109 2.757124 CCCACTGCCCATCCCCTAC 61.757 68.421 0.00 0.00 0.00 3.18
109 110 2.505982 CACTGCCCATCCCCTACG 59.494 66.667 0.00 0.00 0.00 3.51
110 111 2.768344 ACTGCCCATCCCCTACGG 60.768 66.667 0.00 0.00 0.00 4.02
772 773 4.491409 GAGGCCGCCCCTTTCCTC 62.491 72.222 5.55 0.00 46.60 3.71
777 778 4.115199 CGCCCCTTTCCTCCCCAG 62.115 72.222 0.00 0.00 0.00 4.45
778 779 4.448976 GCCCCTTTCCTCCCCAGC 62.449 72.222 0.00 0.00 0.00 4.85
779 780 4.115199 CCCCTTTCCTCCCCAGCG 62.115 72.222 0.00 0.00 0.00 5.18
780 781 4.115199 CCCTTTCCTCCCCAGCGG 62.115 72.222 0.00 0.00 0.00 5.52
781 782 4.803908 CCTTTCCTCCCCAGCGGC 62.804 72.222 0.00 0.00 0.00 6.53
800 801 4.657824 CCGACCGTTCGCTGTGGT 62.658 66.667 0.00 0.00 44.43 4.16
801 802 3.403057 CGACCGTTCGCTGTGGTG 61.403 66.667 0.00 0.00 38.71 4.17
802 803 3.041940 GACCGTTCGCTGTGGTGG 61.042 66.667 0.00 0.00 35.75 4.61
826 827 4.787280 CCAGTCCTCGCCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
827 828 2.685380 CAGTCCTCGCCCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
828 829 2.685380 AGTCCTCGCCCCTCCTTG 60.685 66.667 0.00 0.00 0.00 3.61
829 830 3.003763 GTCCTCGCCCCTCCTTGT 61.004 66.667 0.00 0.00 0.00 3.16
830 831 3.003173 TCCTCGCCCCTCCTTGTG 61.003 66.667 0.00 0.00 0.00 3.33
831 832 4.785453 CCTCGCCCCTCCTTGTGC 62.785 72.222 0.00 0.00 0.00 4.57
839 840 2.677228 CTCCTTGTGCGGGGGATT 59.323 61.111 0.00 0.00 0.00 3.01
840 841 1.000896 CTCCTTGTGCGGGGGATTT 60.001 57.895 0.00 0.00 0.00 2.17
841 842 1.001393 TCCTTGTGCGGGGGATTTC 60.001 57.895 0.00 0.00 0.00 2.17
842 843 1.000896 CCTTGTGCGGGGGATTTCT 60.001 57.895 0.00 0.00 0.00 2.52
843 844 1.315257 CCTTGTGCGGGGGATTTCTG 61.315 60.000 0.00 0.00 0.00 3.02
844 845 1.937546 CTTGTGCGGGGGATTTCTGC 61.938 60.000 0.00 0.00 37.06 4.26
845 846 2.361104 GTGCGGGGGATTTCTGCA 60.361 61.111 0.00 0.00 43.38 4.41
846 847 1.976474 GTGCGGGGGATTTCTGCAA 60.976 57.895 0.00 0.00 46.48 4.08
847 848 1.228706 TGCGGGGGATTTCTGCAAA 60.229 52.632 0.00 0.00 42.74 3.68
848 849 0.829602 TGCGGGGGATTTCTGCAAAA 60.830 50.000 0.00 0.00 42.74 2.44
849 850 0.320050 GCGGGGGATTTCTGCAAAAA 59.680 50.000 0.00 0.00 36.58 1.94
871 872 2.048597 CCACGTCGGCAGCTAACA 60.049 61.111 0.00 0.00 0.00 2.41
872 873 1.447838 CCACGTCGGCAGCTAACAT 60.448 57.895 0.00 0.00 0.00 2.71
873 874 1.695893 CCACGTCGGCAGCTAACATG 61.696 60.000 0.00 0.00 0.00 3.21
874 875 2.100631 ACGTCGGCAGCTAACATGC 61.101 57.895 0.00 0.00 43.09 4.06
875 876 2.703409 GTCGGCAGCTAACATGCG 59.297 61.111 0.00 0.00 44.80 4.73
876 877 2.511373 TCGGCAGCTAACATGCGG 60.511 61.111 0.00 0.00 44.80 5.69
877 878 3.576356 CGGCAGCTAACATGCGGG 61.576 66.667 0.00 0.00 44.80 6.13
878 879 3.892581 GGCAGCTAACATGCGGGC 61.893 66.667 0.00 0.00 44.80 6.13
879 880 3.892581 GCAGCTAACATGCGGGCC 61.893 66.667 0.00 0.00 38.13 5.80
880 881 3.211963 CAGCTAACATGCGGGCCC 61.212 66.667 13.57 13.57 38.13 5.80
881 882 4.856801 AGCTAACATGCGGGCCCG 62.857 66.667 40.26 40.26 43.09 6.13
892 893 3.161450 GGGCCCGCTGGTCAGATA 61.161 66.667 5.69 0.00 38.32 1.98
893 894 2.109181 GGCCCGCTGGTCAGATAC 59.891 66.667 1.65 0.00 35.79 2.24
894 895 2.731571 GGCCCGCTGGTCAGATACA 61.732 63.158 1.65 0.00 35.79 2.29
895 896 1.521681 GCCCGCTGGTCAGATACAC 60.522 63.158 1.65 0.00 0.00 2.90
896 897 1.144057 CCCGCTGGTCAGATACACC 59.856 63.158 1.65 0.00 0.00 4.16
897 898 1.226974 CCGCTGGTCAGATACACCG 60.227 63.158 1.65 0.00 36.61 4.94
898 899 1.511305 CGCTGGTCAGATACACCGT 59.489 57.895 1.65 0.00 36.61 4.83
899 900 0.525668 CGCTGGTCAGATACACCGTC 60.526 60.000 1.65 0.00 36.61 4.79
900 901 0.530744 GCTGGTCAGATACACCGTCA 59.469 55.000 1.65 0.00 36.61 4.35
901 902 1.067142 GCTGGTCAGATACACCGTCAA 60.067 52.381 1.65 0.00 36.61 3.18
902 903 2.418746 GCTGGTCAGATACACCGTCAAT 60.419 50.000 1.65 0.00 36.61 2.57
903 904 3.181479 GCTGGTCAGATACACCGTCAATA 60.181 47.826 1.65 0.00 36.61 1.90
904 905 4.360563 CTGGTCAGATACACCGTCAATAC 58.639 47.826 0.00 0.00 36.61 1.89
928 929 5.878261 CGTTTATACGCGATTTAGACCTT 57.122 39.130 15.93 0.00 41.41 3.50
929 930 6.264909 CGTTTATACGCGATTTAGACCTTT 57.735 37.500 15.93 0.00 41.41 3.11
930 931 6.699063 CGTTTATACGCGATTTAGACCTTTT 58.301 36.000 15.93 0.00 41.41 2.27
931 932 7.175410 CGTTTATACGCGATTTAGACCTTTTT 58.825 34.615 15.93 0.00 41.41 1.94
932 933 7.161418 CGTTTATACGCGATTTAGACCTTTTTG 59.839 37.037 15.93 0.00 41.41 2.44
933 934 7.599630 TTATACGCGATTTAGACCTTTTTGT 57.400 32.000 15.93 0.00 0.00 2.83
934 935 8.700722 TTATACGCGATTTAGACCTTTTTGTA 57.299 30.769 15.93 0.00 0.00 2.41
935 936 5.927954 ACGCGATTTAGACCTTTTTGTAA 57.072 34.783 15.93 0.00 0.00 2.41
936 937 5.682869 ACGCGATTTAGACCTTTTTGTAAC 58.317 37.500 15.93 0.00 0.00 2.50
937 938 4.779523 CGCGATTTAGACCTTTTTGTAACG 59.220 41.667 0.00 0.00 0.00 3.18
938 939 5.613142 CGCGATTTAGACCTTTTTGTAACGT 60.613 40.000 0.00 0.00 0.00 3.99
939 940 5.787062 GCGATTTAGACCTTTTTGTAACGTC 59.213 40.000 0.00 0.00 0.00 4.34
940 941 6.347160 GCGATTTAGACCTTTTTGTAACGTCT 60.347 38.462 0.00 0.00 37.54 4.18
941 942 7.148755 GCGATTTAGACCTTTTTGTAACGTCTA 60.149 37.037 0.00 0.00 35.50 2.59
942 943 8.371053 CGATTTAGACCTTTTTGTAACGTCTAG 58.629 37.037 0.00 0.00 37.36 2.43
943 944 7.412137 TTTAGACCTTTTTGTAACGTCTAGC 57.588 36.000 0.00 0.00 37.36 3.42
944 945 4.313282 AGACCTTTTTGTAACGTCTAGCC 58.687 43.478 0.00 0.00 32.15 3.93
945 946 3.405831 ACCTTTTTGTAACGTCTAGCCC 58.594 45.455 0.00 0.00 0.00 5.19
946 947 2.745821 CCTTTTTGTAACGTCTAGCCCC 59.254 50.000 0.00 0.00 0.00 5.80
947 948 3.404899 CTTTTTGTAACGTCTAGCCCCA 58.595 45.455 0.00 0.00 0.00 4.96
948 949 2.754946 TTTGTAACGTCTAGCCCCAG 57.245 50.000 0.00 0.00 0.00 4.45
949 950 1.927487 TTGTAACGTCTAGCCCCAGA 58.073 50.000 0.00 0.00 0.00 3.86
950 951 1.180029 TGTAACGTCTAGCCCCAGAC 58.820 55.000 0.00 1.55 41.33 3.51
951 952 1.272313 TGTAACGTCTAGCCCCAGACT 60.272 52.381 8.56 0.00 42.36 3.24
952 953 1.823610 GTAACGTCTAGCCCCAGACTT 59.176 52.381 8.56 5.46 42.36 3.01
953 954 0.608640 AACGTCTAGCCCCAGACTTG 59.391 55.000 8.56 0.00 42.36 3.16
954 955 1.258445 ACGTCTAGCCCCAGACTTGG 61.258 60.000 8.56 0.00 42.36 3.61
955 956 1.258445 CGTCTAGCCCCAGACTTGGT 61.258 60.000 8.56 0.00 43.40 3.67
956 957 1.861982 GTCTAGCCCCAGACTTGGTA 58.138 55.000 4.00 0.00 43.40 3.25
957 958 1.481363 GTCTAGCCCCAGACTTGGTAC 59.519 57.143 4.00 0.00 43.40 3.34
958 959 1.361543 TCTAGCCCCAGACTTGGTACT 59.638 52.381 0.00 0.00 43.40 2.73
959 960 1.482593 CTAGCCCCAGACTTGGTACTG 59.517 57.143 0.00 0.00 43.40 2.74
960 961 0.178903 AGCCCCAGACTTGGTACTGA 60.179 55.000 0.00 0.00 43.40 3.41
961 962 0.036294 GCCCCAGACTTGGTACTGAC 60.036 60.000 0.00 0.00 43.40 3.51
962 963 1.348064 CCCCAGACTTGGTACTGACA 58.652 55.000 0.00 0.00 43.40 3.58
963 964 1.002087 CCCCAGACTTGGTACTGACAC 59.998 57.143 0.00 0.00 43.40 3.67
964 965 1.336887 CCCAGACTTGGTACTGACACG 60.337 57.143 0.00 0.00 43.40 4.49
965 966 1.419374 CAGACTTGGTACTGACACGC 58.581 55.000 0.00 0.00 36.38 5.34
966 967 1.037493 AGACTTGGTACTGACACGCA 58.963 50.000 0.00 0.00 0.00 5.24
967 968 1.411246 AGACTTGGTACTGACACGCAA 59.589 47.619 0.00 0.00 0.00 4.85
968 969 2.159014 AGACTTGGTACTGACACGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
969 970 2.610374 GACTTGGTACTGACACGCAAAA 59.390 45.455 0.00 0.00 0.00 2.44
970 971 3.011119 ACTTGGTACTGACACGCAAAAA 58.989 40.909 0.00 0.00 0.00 1.94
971 972 3.630312 ACTTGGTACTGACACGCAAAAAT 59.370 39.130 0.00 0.00 0.00 1.82
972 973 4.097286 ACTTGGTACTGACACGCAAAAATT 59.903 37.500 0.00 0.00 0.00 1.82
973 974 5.297278 ACTTGGTACTGACACGCAAAAATTA 59.703 36.000 0.00 0.00 0.00 1.40
974 975 5.098218 TGGTACTGACACGCAAAAATTAC 57.902 39.130 0.00 0.00 0.00 1.89
975 976 4.023878 TGGTACTGACACGCAAAAATTACC 60.024 41.667 0.00 0.00 0.00 2.85
976 977 4.023878 GGTACTGACACGCAAAAATTACCA 60.024 41.667 0.00 0.00 0.00 3.25
977 978 4.640789 ACTGACACGCAAAAATTACCAA 57.359 36.364 0.00 0.00 0.00 3.67
978 979 5.000012 ACTGACACGCAAAAATTACCAAA 58.000 34.783 0.00 0.00 0.00 3.28
979 980 4.801516 ACTGACACGCAAAAATTACCAAAC 59.198 37.500 0.00 0.00 0.00 2.93
980 981 5.000012 TGACACGCAAAAATTACCAAACT 58.000 34.783 0.00 0.00 0.00 2.66
981 982 5.411781 TGACACGCAAAAATTACCAAACTT 58.588 33.333 0.00 0.00 0.00 2.66
982 983 5.289675 TGACACGCAAAAATTACCAAACTTG 59.710 36.000 0.00 0.00 0.00 3.16
994 995 3.575965 CCAAACTTGGTACCAATCTGC 57.424 47.619 27.24 0.00 43.43 4.26
995 996 3.157087 CCAAACTTGGTACCAATCTGCT 58.843 45.455 27.24 5.14 43.43 4.24
996 997 3.573967 CCAAACTTGGTACCAATCTGCTT 59.426 43.478 27.24 11.00 43.43 3.91
997 998 4.321230 CCAAACTTGGTACCAATCTGCTTC 60.321 45.833 27.24 0.00 43.43 3.86
998 999 3.073274 ACTTGGTACCAATCTGCTTCC 57.927 47.619 27.24 0.00 35.20 3.46
999 1000 2.375174 ACTTGGTACCAATCTGCTTCCA 59.625 45.455 27.24 1.40 35.20 3.53
1000 1001 3.181434 ACTTGGTACCAATCTGCTTCCAA 60.181 43.478 27.24 0.85 35.20 3.53
1001 1002 3.737559 TGGTACCAATCTGCTTCCAAT 57.262 42.857 13.60 0.00 0.00 3.16
1002 1003 3.355378 TGGTACCAATCTGCTTCCAATG 58.645 45.455 13.60 0.00 0.00 2.82
1003 1004 2.099756 GGTACCAATCTGCTTCCAATGC 59.900 50.000 7.15 0.00 0.00 3.56
1004 1005 1.188863 ACCAATCTGCTTCCAATGCC 58.811 50.000 0.00 0.00 0.00 4.40
1005 1006 0.462789 CCAATCTGCTTCCAATGCCC 59.537 55.000 0.00 0.00 0.00 5.36
1006 1007 0.462789 CAATCTGCTTCCAATGCCCC 59.537 55.000 0.00 0.00 0.00 5.80
1007 1008 0.041535 AATCTGCTTCCAATGCCCCA 59.958 50.000 0.00 0.00 0.00 4.96
1008 1009 0.041535 ATCTGCTTCCAATGCCCCAA 59.958 50.000 0.00 0.00 0.00 4.12
1009 1010 0.041535 TCTGCTTCCAATGCCCCAAT 59.958 50.000 0.00 0.00 0.00 3.16
1010 1011 0.906775 CTGCTTCCAATGCCCCAATT 59.093 50.000 0.00 0.00 0.00 2.32
1011 1012 0.614294 TGCTTCCAATGCCCCAATTG 59.386 50.000 0.00 0.00 37.30 2.32
1012 1013 0.614812 GCTTCCAATGCCCCAATTGT 59.385 50.000 4.43 0.00 36.06 2.71
1013 1014 1.676615 GCTTCCAATGCCCCAATTGTG 60.677 52.381 4.43 0.00 36.06 3.33
1014 1015 0.982704 TTCCAATGCCCCAATTGTGG 59.017 50.000 2.04 2.04 45.53 4.17
1015 1016 0.178909 TCCAATGCCCCAATTGTGGT 60.179 50.000 8.84 0.00 44.30 4.16
1016 1017 1.077828 TCCAATGCCCCAATTGTGGTA 59.922 47.619 8.84 4.38 44.30 3.25
1017 1018 1.206849 CCAATGCCCCAATTGTGGTAC 59.793 52.381 8.84 3.30 44.30 3.34
1018 1019 2.178580 CAATGCCCCAATTGTGGTACT 58.821 47.619 8.84 0.00 44.30 2.73
1019 1020 2.566724 CAATGCCCCAATTGTGGTACTT 59.433 45.455 8.84 0.00 44.30 2.24
1020 1021 1.917872 TGCCCCAATTGTGGTACTTC 58.082 50.000 8.84 0.00 44.30 3.01
1021 1022 1.182667 GCCCCAATTGTGGTACTTCC 58.817 55.000 8.84 0.00 44.30 3.46
1022 1023 1.459450 CCCCAATTGTGGTACTTCCG 58.541 55.000 4.43 0.00 44.30 4.30
1023 1024 1.271707 CCCCAATTGTGGTACTTCCGT 60.272 52.381 4.43 0.00 44.30 4.69
1024 1025 1.810151 CCCAATTGTGGTACTTCCGTG 59.190 52.381 4.43 0.00 44.30 4.94
1025 1026 1.199097 CCAATTGTGGTACTTCCGTGC 59.801 52.381 4.43 0.00 40.42 5.34
1026 1027 1.876799 CAATTGTGGTACTTCCGTGCA 59.123 47.619 0.00 0.00 39.52 4.57
1027 1028 2.264005 ATTGTGGTACTTCCGTGCAA 57.736 45.000 0.00 0.00 39.52 4.08
1028 1029 2.264005 TTGTGGTACTTCCGTGCAAT 57.736 45.000 0.00 0.00 39.52 3.56
1029 1030 2.264005 TGTGGTACTTCCGTGCAATT 57.736 45.000 0.00 0.00 39.52 2.32
1030 1031 2.577700 TGTGGTACTTCCGTGCAATTT 58.422 42.857 0.00 0.00 39.52 1.82
1031 1032 3.741249 TGTGGTACTTCCGTGCAATTTA 58.259 40.909 0.00 0.00 39.52 1.40
1032 1033 3.499157 TGTGGTACTTCCGTGCAATTTAC 59.501 43.478 0.00 0.00 39.52 2.01
1033 1034 3.749609 GTGGTACTTCCGTGCAATTTACT 59.250 43.478 0.00 0.00 39.52 2.24
1034 1035 3.998341 TGGTACTTCCGTGCAATTTACTC 59.002 43.478 0.00 0.00 39.52 2.59
1147 1152 2.440539 AGATATCGTCGTTCATGGCC 57.559 50.000 0.00 0.00 0.00 5.36
1209 1228 9.823647 ATCTTCGTTCTTGAATGATACATAACT 57.176 29.630 6.16 0.00 0.00 2.24
1213 1232 9.430623 TCGTTCTTGAATGATACATAACTTCAA 57.569 29.630 1.53 0.00 35.29 2.69
1241 1263 0.820891 ACGTACTGTCTGACCACCGT 60.821 55.000 5.17 5.80 0.00 4.83
1257 1292 1.464219 ACCGTTGTTTTTCGTCGTTGT 59.536 42.857 0.00 0.00 0.00 3.32
1258 1293 2.095875 CCGTTGTTTTTCGTCGTTGTC 58.904 47.619 0.00 0.00 0.00 3.18
1259 1294 2.474196 CCGTTGTTTTTCGTCGTTGTCA 60.474 45.455 0.00 0.00 0.00 3.58
1375 1419 2.970324 GACAAGCCGCCGTTCACA 60.970 61.111 0.00 0.00 0.00 3.58
1435 1479 0.317160 AGCGTTCGGTGATCAAGTCA 59.683 50.000 0.00 0.00 0.00 3.41
1470 1530 3.184206 TGACCTCGTCATCGTCGG 58.816 61.111 0.00 0.00 37.67 4.79
1553 1613 3.851128 GGCCGCTCTACTGGGTCC 61.851 72.222 0.00 0.00 0.00 4.46
1654 1714 3.203442 GACATCGTCGGCCTGGTA 58.797 61.111 0.00 0.00 0.00 3.25
1688 1748 0.747283 GCTCGTCCCCTACTTCTCGA 60.747 60.000 0.00 0.00 0.00 4.04
1864 1924 0.618107 TTGGGTGGCCGATGTACCTA 60.618 55.000 8.96 0.08 34.87 3.08
2020 2080 4.681978 AAGCTCGCGTCGGCCTTT 62.682 61.111 5.77 0.00 35.02 3.11
2544 2834 0.314302 CGTCATCTACCCCGTCCATC 59.686 60.000 0.00 0.00 0.00 3.51
2554 2844 4.420143 CGTCCATCGGTCCATGTC 57.580 61.111 0.00 0.00 35.71 3.06
2555 2845 1.588932 CGTCCATCGGTCCATGTCG 60.589 63.158 0.00 0.00 35.71 4.35
2556 2846 1.813859 GTCCATCGGTCCATGTCGA 59.186 57.895 5.70 5.70 39.79 4.20
2634 2928 5.236478 ACGTTTTTGAGTACTCTGGAATGTG 59.764 40.000 23.01 9.14 0.00 3.21
2637 2932 7.466725 CGTTTTTGAGTACTCTGGAATGTGAAA 60.467 37.037 23.01 9.35 0.00 2.69
2669 2980 1.005805 CCCTGGGAATGGATGAACACA 59.994 52.381 7.01 0.00 0.00 3.72
2687 2998 1.608590 ACAAAATGGTTGCTCTGTCGG 59.391 47.619 0.00 0.00 0.00 4.79
2710 3021 3.490348 CAAGGTTGTCCTGTCTCCATTT 58.510 45.455 0.00 0.00 44.35 2.32
2711 3022 3.425162 AGGTTGTCCTGTCTCCATTTC 57.575 47.619 0.00 0.00 43.33 2.17
2712 3023 2.711009 AGGTTGTCCTGTCTCCATTTCA 59.289 45.455 0.00 0.00 43.33 2.69
2713 3024 3.138283 AGGTTGTCCTGTCTCCATTTCAA 59.862 43.478 0.00 0.00 43.33 2.69
2714 3025 3.888930 GGTTGTCCTGTCTCCATTTCAAA 59.111 43.478 0.00 0.00 0.00 2.69
2715 3026 4.340950 GGTTGTCCTGTCTCCATTTCAAAA 59.659 41.667 0.00 0.00 0.00 2.44
2716 3027 5.163457 GGTTGTCCTGTCTCCATTTCAAAAA 60.163 40.000 0.00 0.00 0.00 1.94
2745 3056 4.520492 AGAAAAACATTGTCCTGCCTAGTG 59.480 41.667 0.00 0.00 0.00 2.74
2805 3186 8.885108 CACCGAAAGTATAAAGTGTTTTAAACG 58.115 33.333 3.28 0.00 32.80 3.60
2861 5170 1.310933 ACGACCAGTACTACCGCCAG 61.311 60.000 0.00 0.00 0.00 4.85
2871 5180 1.919956 CTACCGCCAGAACGAGTCGT 61.920 60.000 13.56 13.56 43.97 4.34
2872 5181 1.915614 TACCGCCAGAACGAGTCGTC 61.916 60.000 20.18 12.37 39.99 4.20
2921 5237 2.328099 GCCAGCTTGACCTTGTCGG 61.328 63.158 0.00 0.00 34.95 4.79
2927 5243 1.284982 CTTGACCTTGTCGGCGACAG 61.285 60.000 36.94 29.52 43.69 3.51
2929 5245 3.858868 GACCTTGTCGGCGACAGCA 62.859 63.158 36.94 25.26 43.69 4.41
2930 5246 3.114616 CCTTGTCGGCGACAGCAG 61.115 66.667 36.94 31.46 43.69 4.24
2947 5263 1.869754 GCAGAGAAGTCTTCGTGCACA 60.870 52.381 26.01 0.81 41.38 4.57
2986 5306 1.192793 GCTGAAGTCATAGTCGTCGC 58.807 55.000 0.00 0.00 0.00 5.19
3020 5340 3.181482 ACATAGATCTGAAGCACCTGACG 60.181 47.826 5.18 0.00 0.00 4.35
3021 5341 0.108424 AGATCTGAAGCACCTGACGC 60.108 55.000 0.00 0.00 0.00 5.19
3026 5346 1.282875 GAAGCACCTGACGCCAAAC 59.717 57.895 0.00 0.00 0.00 2.93
3042 5362 1.088306 AAACTTTGGCACGTGACGAA 58.912 45.000 22.75 22.75 0.00 3.85
3048 5368 0.745128 TGGCACGTGACGAAAAACCT 60.745 50.000 22.23 0.00 0.00 3.50
3051 5371 2.349155 GGCACGTGACGAAAAACCTTAG 60.349 50.000 22.23 0.00 0.00 2.18
3058 5378 1.270678 ACGAAAAACCTTAGCCTCGCT 60.271 47.619 0.00 0.00 43.41 4.93
3060 5380 2.152016 GAAAAACCTTAGCCTCGCTGT 58.848 47.619 0.00 0.00 40.10 4.40
3066 5386 1.734465 CCTTAGCCTCGCTGTTTCAAG 59.266 52.381 0.00 0.00 40.10 3.02
3068 5388 3.585862 CTTAGCCTCGCTGTTTCAAGTA 58.414 45.455 0.00 0.00 40.10 2.24
3071 5391 2.076863 GCCTCGCTGTTTCAAGTACAT 58.923 47.619 0.00 0.00 0.00 2.29
3081 5401 4.832266 TGTTTCAAGTACATGGCAGGAATT 59.168 37.500 5.99 0.00 0.00 2.17
3094 5414 1.117150 AGGAATTTACGCCGGAGCTA 58.883 50.000 5.05 0.00 36.60 3.32
3099 5419 1.585267 TTTACGCCGGAGCTACGTCA 61.585 55.000 18.90 0.00 40.99 4.35
3104 5424 1.602165 CGCCGGAGCTACGTCAATTAT 60.602 52.381 18.90 0.00 36.60 1.28
3111 5431 4.508124 GGAGCTACGTCAATTATGTCCAAG 59.492 45.833 0.00 0.00 0.00 3.61
3115 5435 2.276201 CGTCAATTATGTCCAAGCGGA 58.724 47.619 0.00 0.00 39.79 5.54
3116 5436 2.872245 CGTCAATTATGTCCAAGCGGAT 59.128 45.455 0.00 0.00 45.33 4.18
3123 5443 0.389817 TGTCCAAGCGGATGAACTCG 60.390 55.000 0.00 0.00 45.33 4.18
3133 5453 0.382515 GATGAACTCGAGGAGGACCG 59.617 60.000 18.41 0.00 41.83 4.79
3136 5456 0.964358 GAACTCGAGGAGGACCGGAA 60.964 60.000 18.41 0.00 41.83 4.30
3137 5457 1.249469 AACTCGAGGAGGACCGGAAC 61.249 60.000 18.41 0.00 41.83 3.62
3154 5474 1.002142 GAACCCGGAAAACAAACTCGG 60.002 52.381 0.73 0.00 40.32 4.63
3169 5489 3.045601 ACTCGGAGAAGATTGTGTTGG 57.954 47.619 12.86 0.00 34.09 3.77
3244 5564 1.469308 TGTCACGTTGTGGTCCAAAAC 59.531 47.619 14.27 14.27 34.07 2.43
3353 5673 4.729868 AGCAGTCCAAATCCTACAGTTTT 58.270 39.130 0.00 0.00 0.00 2.43
3377 5697 2.557056 GTCTGTCTGTGTGGCTACAGTA 59.443 50.000 1.83 0.00 46.32 2.74
3386 5706 3.762823 GTGTGGCTACAGTAGAACTACCT 59.237 47.826 12.15 0.00 37.52 3.08
3397 5717 0.237498 GAACTACCTTGTGCGCCAAC 59.763 55.000 4.18 0.00 0.00 3.77
3407 5727 1.971167 TGCGCCAACAATCCTGGAC 60.971 57.895 4.18 0.00 35.85 4.02
3423 5743 4.060900 CCTGGACACTCCGATTATGAATG 58.939 47.826 0.00 0.00 40.17 2.67
3435 5755 4.712476 GATTATGAATGTGAGGACCAGCT 58.288 43.478 0.00 0.00 0.00 4.24
3436 5756 2.706339 ATGAATGTGAGGACCAGCTC 57.294 50.000 0.00 0.00 0.00 4.09
3452 5772 1.622811 AGCTCTTGGAGACTCAACTGG 59.377 52.381 4.53 0.00 0.00 4.00
3492 5826 2.037620 ATCTCTCGCCCATGCCTGTC 62.038 60.000 0.00 0.00 0.00 3.51
3496 5830 2.203070 CGCCCATGCCTGTCCTAC 60.203 66.667 0.00 0.00 0.00 3.18
3497 5831 2.203070 GCCCATGCCTGTCCTACG 60.203 66.667 0.00 0.00 0.00 3.51
3498 5832 2.203070 CCCATGCCTGTCCTACGC 60.203 66.667 0.00 0.00 0.00 4.42
3499 5833 2.735772 CCCATGCCTGTCCTACGCT 61.736 63.158 0.00 0.00 0.00 5.07
3500 5834 1.399744 CCCATGCCTGTCCTACGCTA 61.400 60.000 0.00 0.00 0.00 4.26
3501 5835 0.681733 CCATGCCTGTCCTACGCTAT 59.318 55.000 0.00 0.00 0.00 2.97
3502 5836 1.070758 CCATGCCTGTCCTACGCTATT 59.929 52.381 0.00 0.00 0.00 1.73
3503 5837 2.485479 CCATGCCTGTCCTACGCTATTT 60.485 50.000 0.00 0.00 0.00 1.40
3504 5838 3.206150 CATGCCTGTCCTACGCTATTTT 58.794 45.455 0.00 0.00 0.00 1.82
3505 5839 3.343941 TGCCTGTCCTACGCTATTTTT 57.656 42.857 0.00 0.00 0.00 1.94
3527 5861 7.429636 TTTTTGAACTGTGTACTATGCTACC 57.570 36.000 0.00 0.00 0.00 3.18
3528 5862 5.995565 TTGAACTGTGTACTATGCTACCT 57.004 39.130 0.00 0.00 0.00 3.08
3529 5863 5.995565 TGAACTGTGTACTATGCTACCTT 57.004 39.130 0.00 0.00 0.00 3.50
3530 5864 5.962433 TGAACTGTGTACTATGCTACCTTC 58.038 41.667 0.00 0.00 0.00 3.46
3531 5865 5.105473 TGAACTGTGTACTATGCTACCTTCC 60.105 44.000 0.00 0.00 0.00 3.46
3532 5866 3.705072 ACTGTGTACTATGCTACCTTCCC 59.295 47.826 0.00 0.00 0.00 3.97
3533 5867 3.704566 CTGTGTACTATGCTACCTTCCCA 59.295 47.826 0.00 0.00 0.00 4.37
3534 5868 4.295201 TGTGTACTATGCTACCTTCCCAT 58.705 43.478 0.00 0.00 0.00 4.00
3535 5869 4.100963 TGTGTACTATGCTACCTTCCCATG 59.899 45.833 0.00 0.00 0.00 3.66
3536 5870 4.101119 GTGTACTATGCTACCTTCCCATGT 59.899 45.833 0.00 0.00 0.00 3.21
3537 5871 4.344102 TGTACTATGCTACCTTCCCATGTC 59.656 45.833 0.00 0.00 0.00 3.06
3538 5872 2.706190 ACTATGCTACCTTCCCATGTCC 59.294 50.000 0.00 0.00 0.00 4.02
3539 5873 0.846693 ATGCTACCTTCCCATGTCCC 59.153 55.000 0.00 0.00 0.00 4.46
3540 5874 0.548926 TGCTACCTTCCCATGTCCCA 60.549 55.000 0.00 0.00 0.00 4.37
3541 5875 0.846693 GCTACCTTCCCATGTCCCAT 59.153 55.000 0.00 0.00 0.00 4.00
3542 5876 1.477558 GCTACCTTCCCATGTCCCATG 60.478 57.143 0.00 0.00 0.00 3.66
3543 5877 1.143684 CTACCTTCCCATGTCCCATGG 59.856 57.143 14.93 14.93 38.88 3.66
3558 5892 0.109342 CATGGGTCATGGGTAGAGGC 59.891 60.000 0.00 0.00 38.11 4.70
3559 5893 1.062488 ATGGGTCATGGGTAGAGGCC 61.062 60.000 0.00 0.00 0.00 5.19
3560 5894 1.692749 GGGTCATGGGTAGAGGCCA 60.693 63.158 5.01 0.00 0.00 5.36
3561 5895 1.062488 GGGTCATGGGTAGAGGCCAT 61.062 60.000 5.01 0.00 0.00 4.40
3562 5896 1.729586 GGTCATGGGTAGAGGCCATA 58.270 55.000 5.01 0.00 0.00 2.74
3563 5897 2.054799 GGTCATGGGTAGAGGCCATAA 58.945 52.381 5.01 0.00 0.00 1.90
3564 5898 2.039084 GGTCATGGGTAGAGGCCATAAG 59.961 54.545 5.01 0.00 0.00 1.73
3565 5899 1.699634 TCATGGGTAGAGGCCATAAGC 59.300 52.381 5.01 0.00 42.60 3.09
3566 5900 1.421268 CATGGGTAGAGGCCATAAGCA 59.579 52.381 5.01 0.00 46.50 3.91
3567 5901 1.590591 TGGGTAGAGGCCATAAGCAA 58.409 50.000 5.01 0.00 46.50 3.91
3568 5902 1.919654 TGGGTAGAGGCCATAAGCAAA 59.080 47.619 5.01 0.00 46.50 3.68
3569 5903 2.298610 GGGTAGAGGCCATAAGCAAAC 58.701 52.381 5.01 0.00 46.50 2.93
3570 5904 2.356741 GGGTAGAGGCCATAAGCAAACA 60.357 50.000 5.01 0.00 46.50 2.83
3571 5905 3.555966 GGTAGAGGCCATAAGCAAACAT 58.444 45.455 5.01 0.00 46.50 2.71
3572 5906 4.445735 GGGTAGAGGCCATAAGCAAACATA 60.446 45.833 5.01 0.00 46.50 2.29
3573 5907 4.757149 GGTAGAGGCCATAAGCAAACATAG 59.243 45.833 5.01 0.00 46.50 2.23
3574 5908 3.825328 AGAGGCCATAAGCAAACATAGG 58.175 45.455 5.01 0.00 46.50 2.57
3575 5909 2.887152 GAGGCCATAAGCAAACATAGGG 59.113 50.000 5.01 0.00 46.50 3.53
3576 5910 2.244769 AGGCCATAAGCAAACATAGGGT 59.755 45.455 5.01 0.00 46.50 4.34
3577 5911 3.031013 GGCCATAAGCAAACATAGGGTT 58.969 45.455 0.00 0.00 46.50 4.11
3578 5912 4.079443 AGGCCATAAGCAAACATAGGGTTA 60.079 41.667 5.01 0.00 46.50 2.85
3579 5913 4.647399 GGCCATAAGCAAACATAGGGTTAA 59.353 41.667 0.00 0.00 46.50 2.01
3580 5914 5.451381 GGCCATAAGCAAACATAGGGTTAAC 60.451 44.000 0.00 0.00 46.50 2.01
3581 5915 5.451381 GCCATAAGCAAACATAGGGTTAACC 60.451 44.000 16.85 16.85 39.29 2.85
3583 5917 9.498098 GCCATAAGCAAACATAGGGTTAACCTG 62.498 44.444 23.69 16.42 46.40 4.00
3592 5926 1.601166 GGGTTAACCTGTTGAACGCT 58.399 50.000 23.69 0.00 34.28 5.07
3593 5927 1.534163 GGGTTAACCTGTTGAACGCTC 59.466 52.381 23.69 0.00 34.28 5.03
3594 5928 1.534163 GGTTAACCTGTTGAACGCTCC 59.466 52.381 17.83 0.00 0.00 4.70
3595 5929 1.534163 GTTAACCTGTTGAACGCTCCC 59.466 52.381 0.00 0.00 0.00 4.30
3596 5930 0.035739 TAACCTGTTGAACGCTCCCC 59.964 55.000 0.00 0.00 0.00 4.81
3597 5931 2.359975 CCTGTTGAACGCTCCCCC 60.360 66.667 0.00 0.00 0.00 5.40
3598 5932 2.750350 CTGTTGAACGCTCCCCCT 59.250 61.111 0.00 0.00 0.00 4.79
3599 5933 1.376037 CTGTTGAACGCTCCCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
3600 5934 1.831652 CTGTTGAACGCTCCCCCTCT 61.832 60.000 0.00 0.00 0.00 3.69
3601 5935 1.079057 GTTGAACGCTCCCCCTCTC 60.079 63.158 0.00 0.00 0.00 3.20
3602 5936 1.229209 TTGAACGCTCCCCCTCTCT 60.229 57.895 0.00 0.00 0.00 3.10
3603 5937 0.836400 TTGAACGCTCCCCCTCTCTT 60.836 55.000 0.00 0.00 0.00 2.85
3604 5938 1.258445 TGAACGCTCCCCCTCTCTTC 61.258 60.000 0.00 0.00 0.00 2.87
3605 5939 1.962321 GAACGCTCCCCCTCTCTTCC 61.962 65.000 0.00 0.00 0.00 3.46
3606 5940 2.364317 CGCTCCCCCTCTCTTCCA 60.364 66.667 0.00 0.00 0.00 3.53
3607 5941 2.726351 CGCTCCCCCTCTCTTCCAC 61.726 68.421 0.00 0.00 0.00 4.02
3608 5942 2.726351 GCTCCCCCTCTCTTCCACG 61.726 68.421 0.00 0.00 0.00 4.94
3609 5943 1.000486 CTCCCCCTCTCTTCCACGA 60.000 63.158 0.00 0.00 0.00 4.35
3610 5944 1.305046 TCCCCCTCTCTTCCACGAC 60.305 63.158 0.00 0.00 0.00 4.34
3611 5945 2.711922 CCCCCTCTCTTCCACGACG 61.712 68.421 0.00 0.00 0.00 5.12
3612 5946 1.977544 CCCCTCTCTTCCACGACGT 60.978 63.158 0.00 0.00 0.00 4.34
3613 5947 1.213013 CCCTCTCTTCCACGACGTG 59.787 63.158 21.02 21.02 0.00 4.49
3614 5948 1.444553 CCTCTCTTCCACGACGTGC 60.445 63.158 22.46 0.00 31.34 5.34
3615 5949 1.444553 CTCTCTTCCACGACGTGCC 60.445 63.158 22.46 0.00 31.34 5.01
3616 5950 2.432628 CTCTTCCACGACGTGCCC 60.433 66.667 22.46 0.00 31.34 5.36
3617 5951 3.934391 CTCTTCCACGACGTGCCCC 62.934 68.421 22.46 0.00 31.34 5.80
3618 5952 4.308458 CTTCCACGACGTGCCCCA 62.308 66.667 22.46 2.90 31.34 4.96
3619 5953 4.612412 TTCCACGACGTGCCCCAC 62.612 66.667 22.46 0.00 31.34 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.203422 ATCCGAGGGAGCGAGGAG 60.203 66.667 0.00 0.00 34.05 3.69
1 2 2.203365 GATCCGAGGGAGCGAGGA 60.203 66.667 0.00 0.00 34.05 3.71
2 3 3.299190 GGATCCGAGGGAGCGAGG 61.299 72.222 0.00 0.00 39.27 4.63
3 4 3.665226 CGGATCCGAGGGAGCGAG 61.665 72.222 30.62 0.00 39.27 5.03
44 45 4.436998 GACGTGGAGGCAGACCGG 62.437 72.222 0.00 0.00 42.76 5.28
45 46 4.778415 CGACGTGGAGGCAGACCG 62.778 72.222 0.00 0.00 42.76 4.79
46 47 3.628280 GACGACGTGGAGGCAGACC 62.628 68.421 4.58 0.00 0.00 3.85
47 48 2.126424 GACGACGTGGAGGCAGAC 60.126 66.667 4.58 0.00 0.00 3.51
48 49 1.934220 GATGACGACGTGGAGGCAGA 61.934 60.000 4.58 0.00 0.00 4.26
49 50 1.517257 GATGACGACGTGGAGGCAG 60.517 63.158 4.58 0.00 0.00 4.85
50 51 2.571757 GATGACGACGTGGAGGCA 59.428 61.111 4.58 0.00 0.00 4.75
51 52 2.579787 CGATGACGACGTGGAGGC 60.580 66.667 4.58 0.00 42.66 4.70
52 53 1.226323 GACGATGACGACGTGGAGG 60.226 63.158 4.58 0.00 43.97 4.30
53 54 0.247735 GAGACGATGACGACGTGGAG 60.248 60.000 4.58 0.00 43.97 3.86
54 55 1.642037 GGAGACGATGACGACGTGGA 61.642 60.000 4.58 0.00 43.97 4.02
55 56 1.226323 GGAGACGATGACGACGTGG 60.226 63.158 4.58 0.00 43.97 4.94
56 57 4.361827 GGAGACGATGACGACGTG 57.638 61.111 4.58 0.00 43.97 4.49
68 69 3.500222 GAGGAGGTCGACGGAGAC 58.500 66.667 9.92 4.24 40.25 3.36
90 91 2.368192 TAGGGGATGGGCAGTGGG 60.368 66.667 0.00 0.00 0.00 4.61
91 92 2.919043 GTAGGGGATGGGCAGTGG 59.081 66.667 0.00 0.00 0.00 4.00
92 93 2.505982 CGTAGGGGATGGGCAGTG 59.494 66.667 0.00 0.00 0.00 3.66
755 756 4.491409 GAGGAAAGGGGCGGCCTC 62.491 72.222 28.80 16.44 40.04 4.70
760 761 4.115199 CTGGGGAGGAAAGGGGCG 62.115 72.222 0.00 0.00 0.00 6.13
761 762 4.448976 GCTGGGGAGGAAAGGGGC 62.449 72.222 0.00 0.00 0.00 5.80
762 763 4.115199 CGCTGGGGAGGAAAGGGG 62.115 72.222 0.00 0.00 0.00 4.79
763 764 4.115199 CCGCTGGGGAGGAAAGGG 62.115 72.222 4.46 0.00 38.47 3.95
764 765 4.803908 GCCGCTGGGGAGGAAAGG 62.804 72.222 15.77 0.00 38.47 3.11
785 786 3.041940 CCACCACAGCGAACGGTC 61.042 66.667 0.00 0.00 0.00 4.79
809 810 4.787280 AGGAGGGGCGAGGACTGG 62.787 72.222 0.00 0.00 0.00 4.00
810 811 2.685380 AAGGAGGGGCGAGGACTG 60.685 66.667 0.00 0.00 0.00 3.51
811 812 2.685380 CAAGGAGGGGCGAGGACT 60.685 66.667 0.00 0.00 0.00 3.85
812 813 3.003763 ACAAGGAGGGGCGAGGAC 61.004 66.667 0.00 0.00 0.00 3.85
813 814 3.003173 CACAAGGAGGGGCGAGGA 61.003 66.667 0.00 0.00 0.00 3.71
814 815 4.785453 GCACAAGGAGGGGCGAGG 62.785 72.222 0.00 0.00 0.00 4.63
821 822 2.499303 AAATCCCCCGCACAAGGAGG 62.499 60.000 0.00 0.00 36.00 4.30
822 823 1.000896 AAATCCCCCGCACAAGGAG 60.001 57.895 0.00 0.00 31.94 3.69
823 824 1.001393 GAAATCCCCCGCACAAGGA 60.001 57.895 0.00 0.00 0.00 3.36
824 825 1.000896 AGAAATCCCCCGCACAAGG 60.001 57.895 0.00 0.00 0.00 3.61
825 826 1.937546 GCAGAAATCCCCCGCACAAG 61.938 60.000 0.00 0.00 0.00 3.16
826 827 1.976474 GCAGAAATCCCCCGCACAA 60.976 57.895 0.00 0.00 0.00 3.33
827 828 2.361104 GCAGAAATCCCCCGCACA 60.361 61.111 0.00 0.00 0.00 4.57
828 829 1.531739 TTTGCAGAAATCCCCCGCAC 61.532 55.000 0.00 0.00 31.10 5.34
829 830 0.829602 TTTTGCAGAAATCCCCCGCA 60.830 50.000 0.00 0.00 0.00 5.69
830 831 0.320050 TTTTTGCAGAAATCCCCCGC 59.680 50.000 0.00 0.00 0.00 6.13
854 855 1.447838 ATGTTAGCTGCCGACGTGG 60.448 57.895 0.00 0.00 42.50 4.94
855 856 1.709760 CATGTTAGCTGCCGACGTG 59.290 57.895 0.00 9.76 0.00 4.49
856 857 2.100631 GCATGTTAGCTGCCGACGT 61.101 57.895 0.00 0.00 33.44 4.34
857 858 2.703409 GCATGTTAGCTGCCGACG 59.297 61.111 0.00 0.00 33.44 5.12
858 859 2.703409 CGCATGTTAGCTGCCGAC 59.297 61.111 0.00 0.00 36.24 4.79
859 860 2.511373 CCGCATGTTAGCTGCCGA 60.511 61.111 0.00 0.00 36.24 5.54
860 861 3.576356 CCCGCATGTTAGCTGCCG 61.576 66.667 0.00 0.00 36.24 5.69
861 862 3.892581 GCCCGCATGTTAGCTGCC 61.893 66.667 0.00 0.00 36.24 4.85
862 863 3.892581 GGCCCGCATGTTAGCTGC 61.893 66.667 0.00 0.00 36.26 5.25
863 864 3.211963 GGGCCCGCATGTTAGCTG 61.212 66.667 5.69 0.00 0.00 4.24
864 865 4.856801 CGGGCCCGCATGTTAGCT 62.857 66.667 34.96 0.00 0.00 3.32
875 876 3.161450 TATCTGACCAGCGGGCCC 61.161 66.667 13.57 13.57 37.90 5.80
876 877 2.109181 GTATCTGACCAGCGGGCC 59.891 66.667 1.46 0.00 37.90 5.80
877 878 1.521681 GTGTATCTGACCAGCGGGC 60.522 63.158 1.46 0.00 37.90 6.13
878 879 1.144057 GGTGTATCTGACCAGCGGG 59.856 63.158 0.00 0.00 41.29 6.13
879 880 1.226974 CGGTGTATCTGACCAGCGG 60.227 63.158 17.77 5.05 45.78 5.52
880 881 4.402192 CGGTGTATCTGACCAGCG 57.598 61.111 13.77 13.77 44.60 5.18
881 882 0.530744 TGACGGTGTATCTGACCAGC 59.469 55.000 0.00 0.00 32.45 4.85
882 883 3.526931 ATTGACGGTGTATCTGACCAG 57.473 47.619 0.00 0.00 32.45 4.00
883 884 3.181494 CGTATTGACGGTGTATCTGACCA 60.181 47.826 0.00 0.00 45.63 4.02
884 885 3.369385 CGTATTGACGGTGTATCTGACC 58.631 50.000 0.00 0.00 45.63 4.02
907 908 7.959109 ACAAAAAGGTCTAAATCGCGTATAAAC 59.041 33.333 5.77 0.00 0.00 2.01
908 909 8.031848 ACAAAAAGGTCTAAATCGCGTATAAA 57.968 30.769 5.77 0.00 0.00 1.40
909 910 7.599630 ACAAAAAGGTCTAAATCGCGTATAA 57.400 32.000 5.77 0.00 0.00 0.98
910 911 8.594687 GTTACAAAAAGGTCTAAATCGCGTATA 58.405 33.333 5.77 0.00 0.00 1.47
911 912 7.458677 GTTACAAAAAGGTCTAAATCGCGTAT 58.541 34.615 5.77 0.00 0.00 3.06
912 913 6.399880 CGTTACAAAAAGGTCTAAATCGCGTA 60.400 38.462 5.77 0.00 0.00 4.42
913 914 5.613142 CGTTACAAAAAGGTCTAAATCGCGT 60.613 40.000 5.77 0.00 0.00 6.01
914 915 4.779523 CGTTACAAAAAGGTCTAAATCGCG 59.220 41.667 0.00 0.00 0.00 5.87
915 916 5.682869 ACGTTACAAAAAGGTCTAAATCGC 58.317 37.500 0.00 0.00 0.00 4.58
916 917 7.113704 AGACGTTACAAAAAGGTCTAAATCG 57.886 36.000 10.43 0.00 41.76 3.34
917 918 8.167345 GCTAGACGTTACAAAAAGGTCTAAATC 58.833 37.037 16.52 8.74 43.01 2.17
918 919 7.118825 GGCTAGACGTTACAAAAAGGTCTAAAT 59.881 37.037 16.52 0.78 43.01 1.40
919 920 6.424812 GGCTAGACGTTACAAAAAGGTCTAAA 59.575 38.462 16.52 3.58 43.01 1.85
920 921 5.928264 GGCTAGACGTTACAAAAAGGTCTAA 59.072 40.000 16.52 6.02 43.01 2.10
921 922 5.473039 GGCTAGACGTTACAAAAAGGTCTA 58.527 41.667 15.51 15.51 42.91 2.59
922 923 4.313282 GGCTAGACGTTACAAAAAGGTCT 58.687 43.478 15.02 15.02 44.50 3.85
923 924 3.434641 GGGCTAGACGTTACAAAAAGGTC 59.565 47.826 0.00 3.11 35.84 3.85
924 925 3.405831 GGGCTAGACGTTACAAAAAGGT 58.594 45.455 0.00 0.00 0.00 3.50
925 926 2.745821 GGGGCTAGACGTTACAAAAAGG 59.254 50.000 0.00 0.00 0.00 3.11
926 927 3.404899 TGGGGCTAGACGTTACAAAAAG 58.595 45.455 0.00 0.00 0.00 2.27
927 928 3.071312 TCTGGGGCTAGACGTTACAAAAA 59.929 43.478 0.00 0.00 0.00 1.94
928 929 2.633967 TCTGGGGCTAGACGTTACAAAA 59.366 45.455 0.00 0.00 0.00 2.44
929 930 2.028748 GTCTGGGGCTAGACGTTACAAA 60.029 50.000 0.00 0.00 37.88 2.83
930 931 1.547372 GTCTGGGGCTAGACGTTACAA 59.453 52.381 0.00 0.00 37.88 2.41
931 932 1.180029 GTCTGGGGCTAGACGTTACA 58.820 55.000 0.00 0.00 37.88 2.41
946 947 1.269569 TGCGTGTCAGTACCAAGTCTG 60.270 52.381 0.00 0.00 0.00 3.51
947 948 1.037493 TGCGTGTCAGTACCAAGTCT 58.963 50.000 0.00 0.00 0.00 3.24
948 949 1.860676 TTGCGTGTCAGTACCAAGTC 58.139 50.000 0.00 0.00 0.00 3.01
949 950 2.319136 TTTGCGTGTCAGTACCAAGT 57.681 45.000 0.00 0.00 0.00 3.16
950 951 3.684103 TTTTTGCGTGTCAGTACCAAG 57.316 42.857 0.00 0.00 0.00 3.61
951 952 4.640789 AATTTTTGCGTGTCAGTACCAA 57.359 36.364 0.00 0.00 0.00 3.67
952 953 4.023878 GGTAATTTTTGCGTGTCAGTACCA 60.024 41.667 0.00 0.00 0.00 3.25
953 954 4.023878 TGGTAATTTTTGCGTGTCAGTACC 60.024 41.667 0.00 0.00 0.00 3.34
954 955 5.098218 TGGTAATTTTTGCGTGTCAGTAC 57.902 39.130 0.00 0.00 0.00 2.73
955 956 5.752892 TTGGTAATTTTTGCGTGTCAGTA 57.247 34.783 0.00 0.00 0.00 2.74
956 957 4.640789 TTGGTAATTTTTGCGTGTCAGT 57.359 36.364 0.00 0.00 0.00 3.41
957 958 5.040635 AGTTTGGTAATTTTTGCGTGTCAG 58.959 37.500 0.00 0.00 0.00 3.51
958 959 5.000012 AGTTTGGTAATTTTTGCGTGTCA 58.000 34.783 0.00 0.00 0.00 3.58
959 960 5.276631 CCAAGTTTGGTAATTTTTGCGTGTC 60.277 40.000 2.66 0.00 43.43 3.67
960 961 4.568760 CCAAGTTTGGTAATTTTTGCGTGT 59.431 37.500 2.66 0.00 43.43 4.49
961 962 5.076911 CCAAGTTTGGTAATTTTTGCGTG 57.923 39.130 2.66 0.00 43.43 5.34
975 976 4.321230 GGAAGCAGATTGGTACCAAGTTTG 60.321 45.833 30.00 25.45 39.47 2.93
976 977 3.826729 GGAAGCAGATTGGTACCAAGTTT 59.173 43.478 30.00 20.58 39.47 2.66
977 978 3.181434 TGGAAGCAGATTGGTACCAAGTT 60.181 43.478 30.00 16.46 39.47 2.66
978 979 2.375174 TGGAAGCAGATTGGTACCAAGT 59.625 45.455 30.00 18.27 39.47 3.16
979 980 3.071874 TGGAAGCAGATTGGTACCAAG 57.928 47.619 30.00 18.73 39.47 3.61
980 981 3.517296 TTGGAAGCAGATTGGTACCAA 57.483 42.857 28.95 28.95 40.47 3.67
981 982 3.355378 CATTGGAAGCAGATTGGTACCA 58.645 45.455 11.60 11.60 0.00 3.25
982 983 2.099756 GCATTGGAAGCAGATTGGTACC 59.900 50.000 4.43 4.43 0.00 3.34
983 984 2.099756 GGCATTGGAAGCAGATTGGTAC 59.900 50.000 0.00 0.00 0.00 3.34
984 985 2.378038 GGCATTGGAAGCAGATTGGTA 58.622 47.619 0.00 0.00 0.00 3.25
985 986 1.188863 GGCATTGGAAGCAGATTGGT 58.811 50.000 0.00 0.00 0.00 3.67
986 987 0.462789 GGGCATTGGAAGCAGATTGG 59.537 55.000 0.00 0.00 0.00 3.16
987 988 0.462789 GGGGCATTGGAAGCAGATTG 59.537 55.000 0.00 0.00 0.00 2.67
988 989 0.041535 TGGGGCATTGGAAGCAGATT 59.958 50.000 0.00 0.00 0.00 2.40
989 990 0.041535 TTGGGGCATTGGAAGCAGAT 59.958 50.000 0.00 0.00 0.00 2.90
990 991 0.041535 ATTGGGGCATTGGAAGCAGA 59.958 50.000 0.00 0.00 0.00 4.26
991 992 0.906775 AATTGGGGCATTGGAAGCAG 59.093 50.000 0.00 0.00 0.00 4.24
992 993 0.614294 CAATTGGGGCATTGGAAGCA 59.386 50.000 0.00 0.00 0.00 3.91
993 994 0.614812 ACAATTGGGGCATTGGAAGC 59.385 50.000 10.83 0.00 32.40 3.86
994 995 1.065998 CCACAATTGGGGCATTGGAAG 60.066 52.381 15.25 0.00 39.57 3.46
995 996 0.982704 CCACAATTGGGGCATTGGAA 59.017 50.000 15.25 0.00 39.57 3.53
996 997 2.681348 CCACAATTGGGGCATTGGA 58.319 52.632 15.25 0.00 39.57 3.53
1003 1004 1.271707 ACGGAAGTACCACAATTGGGG 60.272 52.381 25.65 25.65 46.88 4.96
1004 1005 1.810151 CACGGAAGTACCACAATTGGG 59.190 52.381 10.83 5.34 46.30 4.12
1017 1018 2.161609 GTGGGAGTAAATTGCACGGAAG 59.838 50.000 0.00 0.00 0.00 3.46
1018 1019 2.156098 GTGGGAGTAAATTGCACGGAA 58.844 47.619 0.00 0.00 0.00 4.30
1019 1020 1.612199 GGTGGGAGTAAATTGCACGGA 60.612 52.381 0.00 0.00 0.00 4.69
1020 1021 0.808755 GGTGGGAGTAAATTGCACGG 59.191 55.000 0.00 0.00 0.00 4.94
1021 1022 1.199097 GTGGTGGGAGTAAATTGCACG 59.801 52.381 0.00 0.00 0.00 5.34
1022 1023 1.544246 GGTGGTGGGAGTAAATTGCAC 59.456 52.381 0.00 0.00 0.00 4.57
1023 1024 1.884497 CGGTGGTGGGAGTAAATTGCA 60.884 52.381 0.00 0.00 0.00 4.08
1024 1025 0.808755 CGGTGGTGGGAGTAAATTGC 59.191 55.000 0.00 0.00 0.00 3.56
1025 1026 1.810151 CACGGTGGTGGGAGTAAATTG 59.190 52.381 0.00 0.00 40.58 2.32
1026 1027 2.194201 CACGGTGGTGGGAGTAAATT 57.806 50.000 0.00 0.00 40.58 1.82
1027 1028 3.948735 CACGGTGGTGGGAGTAAAT 57.051 52.632 0.00 0.00 40.58 1.40
1147 1152 4.375272 ACGGATGATTCTACAAGCAGATG 58.625 43.478 0.00 0.00 29.55 2.90
1209 1228 7.966753 GTCAGACAGTACGTATGAAGTATTGAA 59.033 37.037 13.87 0.00 46.93 2.69
1213 1232 5.884232 TGGTCAGACAGTACGTATGAAGTAT 59.116 40.000 13.87 0.00 46.93 2.12
1214 1233 5.122869 GTGGTCAGACAGTACGTATGAAGTA 59.877 44.000 13.87 4.61 46.93 2.24
1241 1263 4.583426 CTGATGACAACGACGAAAAACAA 58.417 39.130 0.00 0.00 0.00 2.83
1257 1292 0.549469 ACCCATGATGCTGCTGATGA 59.451 50.000 0.00 0.00 0.00 2.92
1258 1293 0.668535 CACCCATGATGCTGCTGATG 59.331 55.000 0.00 0.38 0.00 3.07
1259 1294 1.107538 GCACCCATGATGCTGCTGAT 61.108 55.000 13.04 0.00 40.08 2.90
1375 1419 0.622665 CCTTCTTGATCTGGGCCAGT 59.377 55.000 31.60 19.57 32.61 4.00
1435 1479 3.041946 GTCATGGACCAGGTAGGAGAAT 58.958 50.000 5.96 0.00 41.22 2.40
1470 1530 2.897972 CCACGTACAGTAGGGCCC 59.102 66.667 16.46 16.46 0.00 5.80
1607 1667 1.596895 GAGGAGTCGGAGAAGGCGTT 61.597 60.000 0.00 0.00 39.69 4.84
1688 1748 2.663196 GCGGTGGCTGTACTTCCT 59.337 61.111 0.00 0.00 35.83 3.36
2020 2080 2.369015 ACCACCCACCAGAACCCA 60.369 61.111 0.00 0.00 0.00 4.51
2060 2120 2.663478 GCCACGCGTTCACGATCAA 61.663 57.895 10.22 0.00 43.02 2.57
2394 2457 0.173708 GCTGTACCAGAAGACTCCCG 59.826 60.000 0.00 0.00 32.44 5.14
2544 2834 0.790207 CAACAACTCGACATGGACCG 59.210 55.000 0.00 0.00 0.00 4.79
2546 2836 3.673809 GTCTACAACAACTCGACATGGAC 59.326 47.826 0.00 0.00 0.00 4.02
2547 2837 3.305813 GGTCTACAACAACTCGACATGGA 60.306 47.826 0.00 0.00 0.00 3.41
2548 2838 2.993899 GGTCTACAACAACTCGACATGG 59.006 50.000 0.00 0.00 0.00 3.66
2549 2839 3.649073 TGGTCTACAACAACTCGACATG 58.351 45.455 0.00 0.00 0.00 3.21
2550 2840 4.537135 ATGGTCTACAACAACTCGACAT 57.463 40.909 0.00 0.00 0.00 3.06
2551 2841 4.330944 AATGGTCTACAACAACTCGACA 57.669 40.909 0.00 0.00 0.00 4.35
2552 2842 4.143389 CGAAATGGTCTACAACAACTCGAC 60.143 45.833 0.00 0.00 30.80 4.20
2553 2843 3.985279 CGAAATGGTCTACAACAACTCGA 59.015 43.478 0.00 0.00 30.80 4.04
2554 2844 3.739300 ACGAAATGGTCTACAACAACTCG 59.261 43.478 0.00 0.00 33.59 4.18
2555 2845 4.510340 ACACGAAATGGTCTACAACAACTC 59.490 41.667 0.00 0.00 0.00 3.01
2556 2846 4.448210 ACACGAAATGGTCTACAACAACT 58.552 39.130 0.00 0.00 0.00 3.16
2650 2961 2.512692 TGTGTTCATCCATTCCCAGG 57.487 50.000 0.00 0.00 0.00 4.45
2669 2980 0.598065 GCCGACAGAGCAACCATTTT 59.402 50.000 0.00 0.00 0.00 1.82
2687 2998 0.606673 GGAGACAGGACAACCTTGGC 60.607 60.000 0.00 0.00 45.36 4.52
2713 3024 8.236586 GCAGGACAATGTTTTTCTTTTCTTTTT 58.763 29.630 0.00 0.00 0.00 1.94
2714 3025 7.148255 GGCAGGACAATGTTTTTCTTTTCTTTT 60.148 33.333 0.00 0.00 0.00 2.27
2715 3026 6.316140 GGCAGGACAATGTTTTTCTTTTCTTT 59.684 34.615 0.00 0.00 0.00 2.52
2716 3027 5.817296 GGCAGGACAATGTTTTTCTTTTCTT 59.183 36.000 0.00 0.00 0.00 2.52
2717 3028 5.129320 AGGCAGGACAATGTTTTTCTTTTCT 59.871 36.000 0.00 0.00 0.00 2.52
2718 3029 5.359756 AGGCAGGACAATGTTTTTCTTTTC 58.640 37.500 0.00 0.00 0.00 2.29
2720 3031 5.598417 ACTAGGCAGGACAATGTTTTTCTTT 59.402 36.000 0.00 0.00 0.00 2.52
2729 3040 2.290260 TGGAACACTAGGCAGGACAATG 60.290 50.000 0.00 0.00 0.00 2.82
2779 3160 8.885108 CGTTTAAAACACTTTATACTTTCGGTG 58.115 33.333 0.00 0.00 30.84 4.94
2781 3162 8.992287 ACGTTTAAAACACTTTATACTTTCGG 57.008 30.769 0.00 0.00 30.84 4.30
2835 5144 1.806542 GTAGTACTGGTCGTTCGGTGA 59.193 52.381 5.39 0.00 0.00 4.02
2861 5170 1.051718 GACACGTCGACGACTCGTTC 61.052 60.000 41.52 22.54 41.37 3.95
2882 5191 3.384532 GGTAGGGGGCGACGACAA 61.385 66.667 1.63 0.00 0.00 3.18
2901 5211 1.294659 CGACAAGGTCAAGCTGGCTC 61.295 60.000 0.00 0.00 32.09 4.70
2907 5217 2.357034 TCGCCGACAAGGTCAAGC 60.357 61.111 0.00 0.00 43.70 4.01
2908 5218 1.284982 CTGTCGCCGACAAGGTCAAG 61.285 60.000 21.56 3.65 42.26 3.02
2921 5237 1.345410 GAAGACTTCTCTGCTGTCGC 58.655 55.000 8.00 0.00 36.01 5.19
2927 5243 0.787183 GTGCACGAAGACTTCTCTGC 59.213 55.000 20.21 20.21 33.81 4.26
2929 5245 2.297315 TCATGTGCACGAAGACTTCTCT 59.703 45.455 13.13 0.00 0.00 3.10
2930 5246 2.410053 GTCATGTGCACGAAGACTTCTC 59.590 50.000 21.62 3.38 0.00 2.87
2947 5263 0.107654 GCGCTGGTTCTTAGGGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
2986 5306 5.902681 TCAGATCTATGTAAGGTTCAACGG 58.097 41.667 0.00 0.00 0.00 4.44
3026 5346 1.843753 GTTTTTCGTCACGTGCCAAAG 59.156 47.619 11.67 0.00 0.00 2.77
3031 5351 2.899977 CTAAGGTTTTTCGTCACGTGC 58.100 47.619 11.67 5.23 0.00 5.34
3042 5362 2.271944 AACAGCGAGGCTAAGGTTTT 57.728 45.000 0.00 0.00 36.40 2.43
3048 5368 2.543777 ACTTGAAACAGCGAGGCTAA 57.456 45.000 0.00 0.00 36.40 3.09
3051 5371 1.508632 TGTACTTGAAACAGCGAGGC 58.491 50.000 0.00 0.00 0.00 4.70
3058 5378 3.500448 TCCTGCCATGTACTTGAAACA 57.500 42.857 10.20 5.00 0.00 2.83
3060 5380 6.348950 CGTAAATTCCTGCCATGTACTTGAAA 60.349 38.462 10.20 0.00 0.00 2.69
3066 5386 2.032924 GGCGTAAATTCCTGCCATGTAC 59.967 50.000 9.25 0.00 46.76 2.90
3068 5388 1.102978 GGCGTAAATTCCTGCCATGT 58.897 50.000 9.25 0.00 46.76 3.21
3081 5401 1.585267 TTGACGTAGCTCCGGCGTAA 61.585 55.000 6.01 0.00 44.37 3.18
3094 5414 2.006888 CCGCTTGGACATAATTGACGT 58.993 47.619 0.00 0.00 33.02 4.34
3099 5419 4.526970 AGTTCATCCGCTTGGACATAATT 58.473 39.130 0.00 0.00 46.92 1.40
3104 5424 0.389817 CGAGTTCATCCGCTTGGACA 60.390 55.000 0.00 0.00 46.92 4.02
3111 5431 1.066587 CCTCCTCGAGTTCATCCGC 59.933 63.158 12.31 0.00 0.00 5.54
3115 5435 1.038130 CCGGTCCTCCTCGAGTTCAT 61.038 60.000 12.31 0.00 0.00 2.57
3116 5436 1.677966 CCGGTCCTCCTCGAGTTCA 60.678 63.158 12.31 0.00 0.00 3.18
3123 5443 3.459063 CGGGTTCCGGTCCTCCTC 61.459 72.222 15.51 1.85 44.15 3.71
3133 5453 1.002142 CGAGTTTGTTTTCCGGGTTCC 60.002 52.381 0.00 0.00 0.00 3.62
3136 5456 0.180878 TCCGAGTTTGTTTTCCGGGT 59.819 50.000 0.00 0.00 40.48 5.28
3137 5457 0.872388 CTCCGAGTTTGTTTTCCGGG 59.128 55.000 0.00 0.00 40.48 5.73
3144 5464 4.451900 ACACAATCTTCTCCGAGTTTGTT 58.548 39.130 0.00 0.00 37.43 2.83
3169 5489 8.000780 AGCTGAAACAGGGAATAAATATCAAC 57.999 34.615 0.00 0.00 31.21 3.18
3181 5501 2.290514 CCAATCAGAGCTGAAACAGGGA 60.291 50.000 4.06 0.00 43.58 4.20
3353 5673 1.460273 TAGCCACACAGACAGACGCA 61.460 55.000 0.00 0.00 0.00 5.24
3377 5697 0.107831 TTGGCGCACAAGGTAGTTCT 59.892 50.000 10.83 0.00 33.18 3.01
3386 5706 1.659233 CAGGATTGTTGGCGCACAA 59.341 52.632 14.73 14.73 40.92 3.33
3397 5717 2.698855 AATCGGAGTGTCCAGGATTG 57.301 50.000 0.00 0.00 35.91 2.67
3407 5727 4.747108 GTCCTCACATTCATAATCGGAGTG 59.253 45.833 0.00 0.00 0.00 3.51
3423 5743 0.248843 CTCCAAGAGCTGGTCCTCAC 59.751 60.000 2.76 0.00 46.51 3.51
3435 5755 1.423584 TGCCAGTTGAGTCTCCAAGA 58.576 50.000 0.00 0.00 0.00 3.02
3436 5756 2.149578 CTTGCCAGTTGAGTCTCCAAG 58.850 52.381 0.00 0.00 0.00 3.61
3443 5763 2.900546 AGTAGTAGCTTGCCAGTTGAGT 59.099 45.455 0.00 0.00 0.00 3.41
3452 5772 5.529060 AGATAATTTGGCAGTAGTAGCTTGC 59.471 40.000 0.00 0.00 0.00 4.01
3468 5802 2.107204 AGGCATGGGCGAGAGATAATTT 59.893 45.455 0.00 0.00 42.47 1.82
3503 5837 7.221450 AGGTAGCATAGTACACAGTTCAAAAA 58.779 34.615 0.00 0.00 0.00 1.94
3504 5838 6.765403 AGGTAGCATAGTACACAGTTCAAAA 58.235 36.000 0.00 0.00 0.00 2.44
3505 5839 6.354794 AGGTAGCATAGTACACAGTTCAAA 57.645 37.500 0.00 0.00 0.00 2.69
3506 5840 5.995565 AGGTAGCATAGTACACAGTTCAA 57.004 39.130 0.00 0.00 0.00 2.69
3507 5841 5.105473 GGAAGGTAGCATAGTACACAGTTCA 60.105 44.000 0.00 0.00 0.00 3.18
3508 5842 5.349809 GGAAGGTAGCATAGTACACAGTTC 58.650 45.833 0.00 0.00 0.00 3.01
3509 5843 4.161754 GGGAAGGTAGCATAGTACACAGTT 59.838 45.833 0.00 0.00 0.00 3.16
3510 5844 3.705072 GGGAAGGTAGCATAGTACACAGT 59.295 47.826 0.00 0.00 0.00 3.55
3511 5845 3.704566 TGGGAAGGTAGCATAGTACACAG 59.295 47.826 0.00 0.00 0.00 3.66
3512 5846 3.715287 TGGGAAGGTAGCATAGTACACA 58.285 45.455 0.00 0.00 0.00 3.72
3513 5847 4.101119 ACATGGGAAGGTAGCATAGTACAC 59.899 45.833 0.00 0.00 0.00 2.90
3514 5848 4.295201 ACATGGGAAGGTAGCATAGTACA 58.705 43.478 0.00 0.00 0.00 2.90
3515 5849 4.262506 GGACATGGGAAGGTAGCATAGTAC 60.263 50.000 0.00 0.00 0.00 2.73
3516 5850 3.901844 GGACATGGGAAGGTAGCATAGTA 59.098 47.826 0.00 0.00 0.00 1.82
3517 5851 2.706190 GGACATGGGAAGGTAGCATAGT 59.294 50.000 0.00 0.00 0.00 2.12
3518 5852 2.039084 GGGACATGGGAAGGTAGCATAG 59.961 54.545 0.00 0.00 0.00 2.23
3519 5853 2.054799 GGGACATGGGAAGGTAGCATA 58.945 52.381 0.00 0.00 0.00 3.14
3520 5854 0.846693 GGGACATGGGAAGGTAGCAT 59.153 55.000 0.00 0.00 0.00 3.79
3521 5855 0.548926 TGGGACATGGGAAGGTAGCA 60.549 55.000 0.00 0.00 0.00 3.49
3522 5856 2.307153 TGGGACATGGGAAGGTAGC 58.693 57.895 0.00 0.00 0.00 3.58
3539 5873 0.109342 GCCTCTACCCATGACCCATG 59.891 60.000 0.00 0.00 41.10 3.66
3540 5874 1.062488 GGCCTCTACCCATGACCCAT 61.062 60.000 0.00 0.00 0.00 4.00
3541 5875 1.692749 GGCCTCTACCCATGACCCA 60.693 63.158 0.00 0.00 0.00 4.51
3542 5876 1.062488 ATGGCCTCTACCCATGACCC 61.062 60.000 3.32 0.00 41.40 4.46
3543 5877 1.729586 TATGGCCTCTACCCATGACC 58.270 55.000 3.32 0.00 42.80 4.02
3544 5878 2.551071 GCTTATGGCCTCTACCCATGAC 60.551 54.545 3.32 0.00 42.80 3.06
3545 5879 1.699634 GCTTATGGCCTCTACCCATGA 59.300 52.381 3.32 0.00 42.80 3.07
3546 5880 1.421268 TGCTTATGGCCTCTACCCATG 59.579 52.381 3.32 0.00 42.80 3.66
3547 5881 1.819753 TGCTTATGGCCTCTACCCAT 58.180 50.000 3.32 0.00 44.85 4.00
3548 5882 1.590591 TTGCTTATGGCCTCTACCCA 58.409 50.000 3.32 0.00 40.92 4.51
3549 5883 2.298610 GTTTGCTTATGGCCTCTACCC 58.701 52.381 3.32 0.00 40.92 3.69
3550 5884 2.999331 TGTTTGCTTATGGCCTCTACC 58.001 47.619 3.32 0.00 40.92 3.18
3551 5885 4.757149 CCTATGTTTGCTTATGGCCTCTAC 59.243 45.833 3.32 0.00 40.92 2.59
3552 5886 4.202461 CCCTATGTTTGCTTATGGCCTCTA 60.202 45.833 3.32 0.00 40.92 2.43
3553 5887 3.435601 CCCTATGTTTGCTTATGGCCTCT 60.436 47.826 3.32 0.00 40.92 3.69
3554 5888 2.887152 CCCTATGTTTGCTTATGGCCTC 59.113 50.000 3.32 0.00 40.92 4.70
3555 5889 2.244769 ACCCTATGTTTGCTTATGGCCT 59.755 45.455 3.32 0.00 40.92 5.19
3556 5890 2.666317 ACCCTATGTTTGCTTATGGCC 58.334 47.619 0.00 0.00 40.92 5.36
3557 5891 5.451381 GGTTAACCCTATGTTTGCTTATGGC 60.451 44.000 14.16 0.00 38.42 4.40
3558 5892 5.891551 AGGTTAACCCTATGTTTGCTTATGG 59.108 40.000 21.30 0.00 43.87 2.74
3559 5893 6.377146 ACAGGTTAACCCTATGTTTGCTTATG 59.623 38.462 21.30 9.75 43.86 1.90
3560 5894 6.490492 ACAGGTTAACCCTATGTTTGCTTAT 58.510 36.000 21.30 0.00 43.86 1.73
3561 5895 5.883180 ACAGGTTAACCCTATGTTTGCTTA 58.117 37.500 21.30 0.00 43.86 3.09
3562 5896 4.736473 ACAGGTTAACCCTATGTTTGCTT 58.264 39.130 21.30 0.00 43.86 3.91
3563 5897 4.382386 ACAGGTTAACCCTATGTTTGCT 57.618 40.909 21.30 0.00 43.86 3.91
3564 5898 4.521256 TCAACAGGTTAACCCTATGTTTGC 59.479 41.667 21.85 0.00 43.86 3.68
3565 5899 6.443792 GTTCAACAGGTTAACCCTATGTTTG 58.556 40.000 21.85 17.71 43.86 2.93
3566 5900 5.239963 CGTTCAACAGGTTAACCCTATGTTT 59.760 40.000 21.85 9.76 43.86 2.83
3567 5901 4.758165 CGTTCAACAGGTTAACCCTATGTT 59.242 41.667 21.30 20.39 43.86 2.71
3568 5902 4.320870 CGTTCAACAGGTTAACCCTATGT 58.679 43.478 21.30 15.77 43.86 2.29
3569 5903 3.126343 GCGTTCAACAGGTTAACCCTATG 59.874 47.826 21.30 15.11 43.86 2.23
3570 5904 3.008704 AGCGTTCAACAGGTTAACCCTAT 59.991 43.478 21.30 4.00 43.86 2.57
3571 5905 2.369532 AGCGTTCAACAGGTTAACCCTA 59.630 45.455 21.30 0.00 43.86 3.53
3573 5907 1.534163 GAGCGTTCAACAGGTTAACCC 59.466 52.381 21.30 2.92 36.42 4.11
3574 5908 1.534163 GGAGCGTTCAACAGGTTAACC 59.466 52.381 17.41 17.41 0.00 2.85
3575 5909 1.534163 GGGAGCGTTCAACAGGTTAAC 59.466 52.381 0.53 0.00 0.00 2.01
3576 5910 1.543871 GGGGAGCGTTCAACAGGTTAA 60.544 52.381 0.53 0.00 0.00 2.01
3577 5911 0.035739 GGGGAGCGTTCAACAGGTTA 59.964 55.000 0.53 0.00 0.00 2.85
3578 5912 1.228154 GGGGAGCGTTCAACAGGTT 60.228 57.895 0.53 0.00 0.00 3.50
3579 5913 2.430367 GGGGAGCGTTCAACAGGT 59.570 61.111 0.53 0.00 0.00 4.00
3580 5914 2.359975 GGGGGAGCGTTCAACAGG 60.360 66.667 0.53 0.00 0.00 4.00
3581 5915 1.376037 GAGGGGGAGCGTTCAACAG 60.376 63.158 0.53 0.00 0.00 3.16
3582 5916 1.827399 GAGAGGGGGAGCGTTCAACA 61.827 60.000 0.53 0.00 0.00 3.33
3583 5917 1.079057 GAGAGGGGGAGCGTTCAAC 60.079 63.158 0.53 0.00 0.00 3.18
3584 5918 0.836400 AAGAGAGGGGGAGCGTTCAA 60.836 55.000 0.53 0.00 0.00 2.69
3585 5919 1.229209 AAGAGAGGGGGAGCGTTCA 60.229 57.895 0.53 0.00 0.00 3.18
3586 5920 1.518302 GAAGAGAGGGGGAGCGTTC 59.482 63.158 0.00 0.00 0.00 3.95
3587 5921 1.990614 GGAAGAGAGGGGGAGCGTT 60.991 63.158 0.00 0.00 0.00 4.84
3588 5922 2.364448 GGAAGAGAGGGGGAGCGT 60.364 66.667 0.00 0.00 0.00 5.07
3589 5923 2.364317 TGGAAGAGAGGGGGAGCG 60.364 66.667 0.00 0.00 0.00 5.03
3590 5924 2.726351 CGTGGAAGAGAGGGGGAGC 61.726 68.421 0.00 0.00 0.00 4.70
3591 5925 1.000486 TCGTGGAAGAGAGGGGGAG 60.000 63.158 0.00 0.00 0.00 4.30
3592 5926 1.305046 GTCGTGGAAGAGAGGGGGA 60.305 63.158 0.00 0.00 0.00 4.81
3593 5927 2.711922 CGTCGTGGAAGAGAGGGGG 61.712 68.421 0.00 0.00 0.00 5.40
3594 5928 1.977544 ACGTCGTGGAAGAGAGGGG 60.978 63.158 0.00 0.00 0.00 4.79
3595 5929 1.213013 CACGTCGTGGAAGAGAGGG 59.787 63.158 17.75 0.00 0.00 4.30
3596 5930 1.444553 GCACGTCGTGGAAGAGAGG 60.445 63.158 25.70 0.00 33.64 3.69
3597 5931 1.444553 GGCACGTCGTGGAAGAGAG 60.445 63.158 25.70 0.00 33.64 3.20
3598 5932 2.649034 GGCACGTCGTGGAAGAGA 59.351 61.111 25.70 0.00 33.64 3.10
3599 5933 2.432628 GGGCACGTCGTGGAAGAG 60.433 66.667 25.70 0.45 33.64 2.85
3600 5934 3.998672 GGGGCACGTCGTGGAAGA 61.999 66.667 25.70 0.00 33.64 2.87
3601 5935 4.308458 TGGGGCACGTCGTGGAAG 62.308 66.667 25.70 1.61 33.64 3.46
3602 5936 4.612412 GTGGGGCACGTCGTGGAA 62.612 66.667 25.70 0.00 33.64 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.