Multiple sequence alignment - TraesCS6B01G308700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G308700 chr6B 100.000 3037 0 0 1 3037 552512734 552515770 0.000000e+00 5609.0
1 TraesCS6B01G308700 chr6B 100.000 306 0 0 3522 3827 552516255 552516560 2.000000e-157 566.0
2 TraesCS6B01G308700 chr6B 86.885 183 20 4 3545 3725 624508277 624508457 6.480000e-48 202.0
3 TraesCS6B01G308700 chr6B 84.000 175 22 6 3535 3707 483334472 483334642 3.060000e-36 163.0
4 TraesCS6B01G308700 chr2D 93.172 2885 104 26 1 2851 349584457 349587282 0.000000e+00 4150.0
5 TraesCS6B01G308700 chr2B 97.984 1786 34 1 1015 2800 416187832 416186049 0.000000e+00 3097.0
6 TraesCS6B01G308700 chr2B 95.608 979 27 11 1 972 416189059 416188090 0.000000e+00 1555.0
7 TraesCS6B01G308700 chr2B 92.638 163 10 1 2875 3037 391452335 391452495 2.300000e-57 233.0
8 TraesCS6B01G308700 chr2B 93.168 161 8 3 2875 3035 474281055 474280898 2.300000e-57 233.0
9 TraesCS6B01G308700 chr2B 91.463 164 13 1 2875 3037 582315004 582315167 1.380000e-54 224.0
10 TraesCS6B01G308700 chr2B 90.798 163 13 1 2875 3037 650478321 650478161 2.320000e-52 217.0
11 TraesCS6B01G308700 chr2B 90.798 163 14 1 2875 3037 772833253 772833092 2.320000e-52 217.0
12 TraesCS6B01G308700 chr2B 90.244 164 14 2 2875 3037 798983535 798983373 2.990000e-51 213.0
13 TraesCS6B01G308700 chr2B 97.872 47 1 0 2805 2851 416185946 416185900 8.810000e-12 82.4
14 TraesCS6B01G308700 chr2A 94.564 1913 46 22 866 2761 464935165 464937036 0.000000e+00 2904.0
15 TraesCS6B01G308700 chr2A 95.458 1299 36 10 866 2147 465343028 465344320 0.000000e+00 2050.0
16 TraesCS6B01G308700 chr2A 94.568 718 24 7 2143 2848 465344662 465345376 0.000000e+00 1096.0
17 TraesCS6B01G308700 chr2A 90.532 771 52 9 9 766 464934288 464935050 0.000000e+00 1000.0
18 TraesCS6B01G308700 chr2A 89.231 780 65 10 1 767 465330422 465331195 0.000000e+00 957.0
19 TraesCS6B01G308700 chr2A 88.144 641 57 8 2 629 465337812 465338446 0.000000e+00 745.0
20 TraesCS6B01G308700 chr2A 88.462 234 14 7 2627 2848 464953716 464953948 1.750000e-68 270.0
21 TraesCS6B01G308700 chr2A 89.189 185 15 5 45 227 672785077 672785258 3.850000e-55 226.0
22 TraesCS6B01G308700 chr2A 94.161 137 8 0 630 766 465342762 465342898 3.870000e-50 209.0
23 TraesCS6B01G308700 chr2A 83.913 230 13 9 771 977 465331229 465331457 8.390000e-47 198.0
24 TraesCS6B01G308700 chr2A 89.423 104 4 3 2752 2848 464937469 464937572 1.440000e-24 124.0
25 TraesCS6B01G308700 chr2A 91.892 74 3 2 766 839 464935095 464935165 2.430000e-17 100.0
26 TraesCS6B01G308700 chr2A 89.474 76 6 1 764 839 465342955 465343028 1.130000e-15 95.3
27 TraesCS6B01G308700 chr4D 78.047 1526 265 37 1067 2546 444908435 444906934 0.000000e+00 898.0
28 TraesCS6B01G308700 chr4D 77.967 1525 268 35 1067 2546 445000000 444998499 0.000000e+00 893.0
29 TraesCS6B01G308700 chr4A 77.371 1529 273 43 1067 2546 22095420 22093916 0.000000e+00 839.0
30 TraesCS6B01G308700 chr4A 77.038 1533 275 42 1067 2546 22142371 22140863 0.000000e+00 809.0
31 TraesCS6B01G308700 chr4A 87.634 186 16 5 47 228 461889744 461889562 3.870000e-50 209.0
32 TraesCS6B01G308700 chr4A 85.976 164 19 4 3546 3707 511014135 511013974 5.080000e-39 172.0
33 TraesCS6B01G308700 chr4B 76.177 1423 234 55 1067 2429 554986123 554987500 0.000000e+00 652.0
34 TraesCS6B01G308700 chr4B 91.411 163 12 2 2875 3037 565207074 565206914 4.980000e-54 222.0
35 TraesCS6B01G308700 chr4B 85.366 164 20 4 3546 3707 530234135 530233974 2.360000e-37 167.0
36 TraesCS6B01G308700 chr4B 88.421 95 8 3 3721 3812 605055355 605055261 1.120000e-20 111.0
37 TraesCS6B01G308700 chr1A 83.516 273 33 8 45 307 510910507 510910777 1.060000e-60 244.0
38 TraesCS6B01G308700 chr3D 83.088 272 34 4 48 308 169450457 169450187 1.780000e-58 237.0
39 TraesCS6B01G308700 chr3D 83.133 166 20 4 151 308 518219411 518219576 1.110000e-30 145.0
40 TraesCS6B01G308700 chr5B 91.463 164 13 1 2875 3037 34558171 34558334 1.380000e-54 224.0
41 TraesCS6B01G308700 chr5B 85.276 163 21 3 3545 3705 146826545 146826706 8.510000e-37 165.0
42 TraesCS6B01G308700 chr7B 82.353 255 39 5 51 300 620589928 620590181 2.320000e-52 217.0
43 TraesCS6B01G308700 chr7B 90.798 163 14 1 2875 3037 663485622 663485783 2.320000e-52 217.0
44 TraesCS6B01G308700 chr7B 85.976 164 19 4 3546 3707 483328022 483328183 5.080000e-39 172.0
45 TraesCS6B01G308700 chr7B 84.302 172 22 5 3539 3709 580879858 580879691 3.060000e-36 163.0
46 TraesCS6B01G308700 chr6D 86.145 166 19 4 3546 3709 1591576 1591413 3.930000e-40 176.0
47 TraesCS6B01G308700 chr6D 82.609 161 24 4 151 308 84718354 84718195 5.160000e-29 139.0
48 TraesCS6B01G308700 chr5D 85.366 164 20 4 3546 3707 115404322 115404161 2.360000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G308700 chr6B 552512734 552516560 3826 False 3087.500000 5609 100.000000 1 3827 2 chr6B.!!$F3 3826
1 TraesCS6B01G308700 chr2D 349584457 349587282 2825 False 4150.000000 4150 93.172000 1 2851 1 chr2D.!!$F1 2850
2 TraesCS6B01G308700 chr2B 416185900 416189059 3159 True 1578.133333 3097 97.154667 1 2851 3 chr2B.!!$R5 2850
3 TraesCS6B01G308700 chr2A 464934288 464937572 3284 False 1032.000000 2904 91.602750 9 2848 4 chr2A.!!$F4 2839
4 TraesCS6B01G308700 chr2A 465342762 465345376 2614 False 862.575000 2050 93.415250 630 2848 4 chr2A.!!$F6 2218
5 TraesCS6B01G308700 chr2A 465337812 465338446 634 False 745.000000 745 88.144000 2 629 1 chr2A.!!$F2 627
6 TraesCS6B01G308700 chr2A 465330422 465331457 1035 False 577.500000 957 86.572000 1 977 2 chr2A.!!$F5 976
7 TraesCS6B01G308700 chr4D 444906934 444908435 1501 True 898.000000 898 78.047000 1067 2546 1 chr4D.!!$R1 1479
8 TraesCS6B01G308700 chr4D 444998499 445000000 1501 True 893.000000 893 77.967000 1067 2546 1 chr4D.!!$R2 1479
9 TraesCS6B01G308700 chr4A 22093916 22095420 1504 True 839.000000 839 77.371000 1067 2546 1 chr4A.!!$R1 1479
10 TraesCS6B01G308700 chr4A 22140863 22142371 1508 True 809.000000 809 77.038000 1067 2546 1 chr4A.!!$R2 1479
11 TraesCS6B01G308700 chr4B 554986123 554987500 1377 False 652.000000 652 76.177000 1067 2429 1 chr4B.!!$F1 1362

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 1.603455 AATGGTGGGCCTGACAACG 60.603 57.895 4.53 0.0 35.27 4.10 F
823 929 2.162208 CGCATGTAACAACTGCCTCATT 59.838 45.455 0.00 0.0 32.24 2.57 F
2569 3359 1.061546 TCTTCCCCTTTGTAAGCGGT 58.938 50.000 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 1653 0.178068 GCGTATTGCTCCAGGAAGGA 59.822 55.000 0.0 0.0 46.75 3.36 R
2638 3428 3.239941 CGTTCGACAAATAGATCCGACAC 59.760 47.826 0.0 0.0 0.00 3.67 R
3573 4908 0.036388 GATGACCTGAAACCCTGCGA 60.036 55.000 0.0 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.603455 AATGGTGGGCCTGACAACG 60.603 57.895 4.53 0.00 35.27 4.10
103 104 4.809426 CCACATAGGATAAACGTTGAGGTC 59.191 45.833 0.00 0.00 41.22 3.85
183 184 3.719268 AGCACCATATTTCTCACCACA 57.281 42.857 0.00 0.00 0.00 4.17
318 330 5.124936 ACATGCCCTTAATAAAACCGTTCTC 59.875 40.000 0.00 0.00 0.00 2.87
334 346 3.058016 CGTTCTCTGGTCATTTGCACAAT 60.058 43.478 0.00 0.00 0.00 2.71
434 448 6.069088 TCCATTAAGATATGAACACACCCCTT 60.069 38.462 0.00 0.00 0.00 3.95
547 562 5.940603 TTTGCGTATAATGCCAATTTTCG 57.059 34.783 0.00 0.00 0.00 3.46
727 743 5.767269 TCTAGTTTGATTTCGCAAATTGCA 58.233 33.333 18.65 2.45 45.36 4.08
823 929 2.162208 CGCATGTAACAACTGCCTCATT 59.838 45.455 0.00 0.00 32.24 2.57
883 1024 4.080469 TCCTACCATTTTTACCCGCATGTA 60.080 41.667 0.00 0.00 0.00 2.29
910 1051 4.965042 TTGTCGCGTATGTTGCTATATG 57.035 40.909 5.77 0.00 0.00 1.78
999 1164 2.988010 TGCTTGCGAGGACTTCATAT 57.012 45.000 2.37 0.00 0.00 1.78
1000 1165 4.607293 ATGCTTGCGAGGACTTCATATA 57.393 40.909 2.37 0.00 0.00 0.86
1268 1653 1.349067 GGTGTACCAACAGTCTCCCT 58.651 55.000 0.00 0.00 35.91 4.20
1269 1654 1.275573 GGTGTACCAACAGTCTCCCTC 59.724 57.143 0.00 0.00 35.91 4.30
1522 1930 5.279708 CCATATCGCTTACTTCTTCCCTCAT 60.280 44.000 0.00 0.00 0.00 2.90
1579 1987 2.659800 CCTCACTCTCGGAGGTTGT 58.340 57.895 4.96 0.00 45.59 3.32
2556 3346 3.438434 GCATGAGTTTGAGAGTTCTTCCC 59.562 47.826 0.00 0.00 0.00 3.97
2569 3359 1.061546 TCTTCCCCTTTGTAAGCGGT 58.938 50.000 0.00 0.00 0.00 5.68
2624 3414 4.751060 AGTTCGGCTCATCGTATGTTTTA 58.249 39.130 0.00 0.00 0.00 1.52
2625 3415 5.357257 AGTTCGGCTCATCGTATGTTTTAT 58.643 37.500 0.00 0.00 0.00 1.40
2766 4003 8.016801 TGATTTACTGAATAATGTATGCATGCG 58.983 33.333 14.09 0.00 35.15 4.73
2855 4190 8.465273 AAATGCATAGGTTAGAAAATAGTCCC 57.535 34.615 0.00 0.00 0.00 4.46
2856 4191 5.937111 TGCATAGGTTAGAAAATAGTCCCC 58.063 41.667 0.00 0.00 0.00 4.81
2857 4192 5.163131 TGCATAGGTTAGAAAATAGTCCCCC 60.163 44.000 0.00 0.00 0.00 5.40
2858 4193 5.548406 CATAGGTTAGAAAATAGTCCCCCG 58.452 45.833 0.00 0.00 0.00 5.73
2859 4194 2.775960 AGGTTAGAAAATAGTCCCCCGG 59.224 50.000 0.00 0.00 0.00 5.73
2860 4195 2.507058 GGTTAGAAAATAGTCCCCCGGT 59.493 50.000 0.00 0.00 0.00 5.28
2861 4196 3.711190 GGTTAGAAAATAGTCCCCCGGTA 59.289 47.826 0.00 0.00 0.00 4.02
2862 4197 4.202295 GGTTAGAAAATAGTCCCCCGGTAG 60.202 50.000 0.00 0.00 0.00 3.18
2863 4198 2.405559 AGAAAATAGTCCCCCGGTAGG 58.594 52.381 0.00 0.00 37.24 3.18
2889 4224 2.919228 GGGGGTGCTAGACATACAAAG 58.081 52.381 0.00 0.00 0.00 2.77
2890 4225 2.504175 GGGGGTGCTAGACATACAAAGA 59.496 50.000 0.00 0.00 0.00 2.52
2891 4226 3.136626 GGGGGTGCTAGACATACAAAGAT 59.863 47.826 0.00 0.00 0.00 2.40
2892 4227 4.385310 GGGGGTGCTAGACATACAAAGATT 60.385 45.833 0.00 0.00 0.00 2.40
2893 4228 5.193679 GGGGTGCTAGACATACAAAGATTT 58.806 41.667 0.00 0.00 0.00 2.17
2894 4229 5.066505 GGGGTGCTAGACATACAAAGATTTG 59.933 44.000 3.79 3.79 43.62 2.32
2909 4244 7.100829 CAAAGATTTGTAAAAGCCGGTAAAC 57.899 36.000 1.90 0.00 33.59 2.01
2910 4245 6.644248 AAGATTTGTAAAAGCCGGTAAACT 57.356 33.333 1.90 0.00 0.00 2.66
2911 4246 6.009115 AGATTTGTAAAAGCCGGTAAACTG 57.991 37.500 1.90 0.00 0.00 3.16
2912 4247 5.533528 AGATTTGTAAAAGCCGGTAAACTGT 59.466 36.000 1.90 0.00 0.00 3.55
2913 4248 5.579564 TTTGTAAAAGCCGGTAAACTGTT 57.420 34.783 1.90 0.00 0.00 3.16
2914 4249 5.579564 TTGTAAAAGCCGGTAAACTGTTT 57.420 34.783 10.98 10.98 0.00 2.83
2915 4250 5.172460 TGTAAAAGCCGGTAAACTGTTTC 57.828 39.130 9.38 2.01 0.00 2.78
2916 4251 3.720949 AAAAGCCGGTAAACTGTTTCC 57.279 42.857 9.38 9.80 0.00 3.13
2917 4252 2.351706 AAGCCGGTAAACTGTTTCCA 57.648 45.000 9.38 0.00 0.00 3.53
2918 4253 2.579410 AGCCGGTAAACTGTTTCCAT 57.421 45.000 9.38 0.00 0.00 3.41
2919 4254 2.433436 AGCCGGTAAACTGTTTCCATC 58.567 47.619 9.38 5.83 0.00 3.51
2920 4255 2.039879 AGCCGGTAAACTGTTTCCATCT 59.960 45.455 9.38 7.65 0.00 2.90
2921 4256 3.262405 AGCCGGTAAACTGTTTCCATCTA 59.738 43.478 9.38 0.00 0.00 1.98
2922 4257 4.004982 GCCGGTAAACTGTTTCCATCTAA 58.995 43.478 9.38 0.00 0.00 2.10
2923 4258 4.142752 GCCGGTAAACTGTTTCCATCTAAC 60.143 45.833 9.38 0.47 0.00 2.34
2924 4259 4.998672 CCGGTAAACTGTTTCCATCTAACA 59.001 41.667 9.38 0.00 34.55 2.41
2925 4260 5.470777 CCGGTAAACTGTTTCCATCTAACAA 59.529 40.000 9.38 0.00 35.28 2.83
2926 4261 6.368213 CGGTAAACTGTTTCCATCTAACAAC 58.632 40.000 9.38 0.00 35.28 3.32
2927 4262 6.567132 CGGTAAACTGTTTCCATCTAACAACC 60.567 42.308 9.38 6.74 35.28 3.77
2928 4263 6.263617 GGTAAACTGTTTCCATCTAACAACCA 59.736 38.462 9.38 0.00 34.81 3.67
2929 4264 6.783708 AAACTGTTTCCATCTAACAACCAA 57.216 33.333 0.00 0.00 35.28 3.67
2930 4265 6.976934 AACTGTTTCCATCTAACAACCAAT 57.023 33.333 0.00 0.00 35.28 3.16
2931 4266 6.976934 ACTGTTTCCATCTAACAACCAATT 57.023 33.333 0.00 0.00 35.28 2.32
2932 4267 8.472007 AACTGTTTCCATCTAACAACCAATTA 57.528 30.769 0.00 0.00 35.28 1.40
2933 4268 7.882179 ACTGTTTCCATCTAACAACCAATTAC 58.118 34.615 0.00 0.00 35.28 1.89
2934 4269 7.504238 ACTGTTTCCATCTAACAACCAATTACA 59.496 33.333 0.00 0.00 35.28 2.41
2935 4270 8.239038 TGTTTCCATCTAACAACCAATTACAA 57.761 30.769 0.00 0.00 32.89 2.41
2936 4271 8.696374 TGTTTCCATCTAACAACCAATTACAAA 58.304 29.630 0.00 0.00 32.89 2.83
2937 4272 9.705290 GTTTCCATCTAACAACCAATTACAAAT 57.295 29.630 0.00 0.00 0.00 2.32
2938 4273 9.921637 TTTCCATCTAACAACCAATTACAAATC 57.078 29.630 0.00 0.00 0.00 2.17
2939 4274 8.877864 TCCATCTAACAACCAATTACAAATCT 57.122 30.769 0.00 0.00 0.00 2.40
2940 4275 8.956426 TCCATCTAACAACCAATTACAAATCTC 58.044 33.333 0.00 0.00 0.00 2.75
2941 4276 8.960591 CCATCTAACAACCAATTACAAATCTCT 58.039 33.333 0.00 0.00 0.00 3.10
2942 4277 9.994432 CATCTAACAACCAATTACAAATCTCTC 57.006 33.333 0.00 0.00 0.00 3.20
2943 4278 8.561738 TCTAACAACCAATTACAAATCTCTCC 57.438 34.615 0.00 0.00 0.00 3.71
2944 4279 6.590234 AACAACCAATTACAAATCTCTCCC 57.410 37.500 0.00 0.00 0.00 4.30
2945 4280 5.016831 ACAACCAATTACAAATCTCTCCCC 58.983 41.667 0.00 0.00 0.00 4.81
2946 4281 4.251103 ACCAATTACAAATCTCTCCCCC 57.749 45.455 0.00 0.00 0.00 5.40
2947 4282 3.596046 ACCAATTACAAATCTCTCCCCCA 59.404 43.478 0.00 0.00 0.00 4.96
2948 4283 3.954258 CCAATTACAAATCTCTCCCCCAC 59.046 47.826 0.00 0.00 0.00 4.61
2949 4284 4.325344 CCAATTACAAATCTCTCCCCCACT 60.325 45.833 0.00 0.00 0.00 4.00
2950 4285 4.510167 ATTACAAATCTCTCCCCCACTG 57.490 45.455 0.00 0.00 0.00 3.66
2951 4286 2.044793 ACAAATCTCTCCCCCACTGA 57.955 50.000 0.00 0.00 0.00 3.41
2952 4287 2.566746 ACAAATCTCTCCCCCACTGAT 58.433 47.619 0.00 0.00 0.00 2.90
2953 4288 2.922283 ACAAATCTCTCCCCCACTGATT 59.078 45.455 0.00 0.00 0.00 2.57
2954 4289 3.334881 ACAAATCTCTCCCCCACTGATTT 59.665 43.478 0.00 0.00 37.70 2.17
2955 4290 4.202716 ACAAATCTCTCCCCCACTGATTTT 60.203 41.667 0.00 0.00 35.84 1.82
2956 4291 3.941704 ATCTCTCCCCCACTGATTTTC 57.058 47.619 0.00 0.00 0.00 2.29
2957 4292 2.631384 TCTCTCCCCCACTGATTTTCA 58.369 47.619 0.00 0.00 0.00 2.69
2968 4303 2.305009 CTGATTTTCAGGAGGATGGGC 58.695 52.381 0.00 0.00 40.71 5.36
2969 4304 1.063717 TGATTTTCAGGAGGATGGGCC 60.064 52.381 0.00 0.00 0.00 5.80
2970 4305 0.106519 ATTTTCAGGAGGATGGGCCG 60.107 55.000 0.00 0.00 43.43 6.13
2971 4306 1.497309 TTTTCAGGAGGATGGGCCGT 61.497 55.000 0.00 0.00 43.43 5.68
2972 4307 1.910580 TTTCAGGAGGATGGGCCGTC 61.911 60.000 17.76 17.76 43.43 4.79
2973 4308 3.866582 CAGGAGGATGGGCCGTCC 61.867 72.222 33.55 33.55 43.43 4.79
2978 4313 4.554036 GGATGGGCCGTCCTGCTC 62.554 72.222 33.30 10.16 36.66 4.26
2980 4315 4.101448 ATGGGCCGTCCTGCTCAC 62.101 66.667 0.00 0.00 46.29 3.51
2983 4318 4.767255 GGCCGTCCTGCTCACCTG 62.767 72.222 0.00 0.00 0.00 4.00
2984 4319 4.008933 GCCGTCCTGCTCACCTGT 62.009 66.667 0.00 0.00 0.00 4.00
2985 4320 2.743718 CCGTCCTGCTCACCTGTT 59.256 61.111 0.00 0.00 0.00 3.16
2986 4321 1.669115 CCGTCCTGCTCACCTGTTG 60.669 63.158 0.00 0.00 0.00 3.33
2987 4322 1.669115 CGTCCTGCTCACCTGTTGG 60.669 63.158 0.00 0.00 39.83 3.77
2988 4323 1.968540 GTCCTGCTCACCTGTTGGC 60.969 63.158 0.00 0.00 36.63 4.52
2989 4324 2.674380 CCTGCTCACCTGTTGGCC 60.674 66.667 0.00 0.00 36.63 5.36
2990 4325 2.113774 CTGCTCACCTGTTGGCCA 59.886 61.111 0.00 0.00 36.63 5.36
2991 4326 1.529010 CTGCTCACCTGTTGGCCAA 60.529 57.895 16.05 16.05 36.63 4.52
2992 4327 0.896940 CTGCTCACCTGTTGGCCAAT 60.897 55.000 23.66 1.56 36.63 3.16
2993 4328 1.180456 TGCTCACCTGTTGGCCAATG 61.180 55.000 23.66 16.02 36.63 2.82
2994 4329 0.895100 GCTCACCTGTTGGCCAATGA 60.895 55.000 23.66 19.49 36.63 2.57
2995 4330 1.171308 CTCACCTGTTGGCCAATGAG 58.829 55.000 25.04 25.04 36.63 2.90
2996 4331 0.770499 TCACCTGTTGGCCAATGAGA 59.230 50.000 23.66 14.12 36.63 3.27
2997 4332 1.144708 TCACCTGTTGGCCAATGAGAA 59.855 47.619 23.66 3.31 36.63 2.87
2998 4333 1.270550 CACCTGTTGGCCAATGAGAAC 59.729 52.381 23.66 8.96 36.63 3.01
2999 4334 0.890683 CCTGTTGGCCAATGAGAACC 59.109 55.000 23.66 7.29 0.00 3.62
3000 4335 1.619654 CTGTTGGCCAATGAGAACCA 58.380 50.000 23.66 11.94 0.00 3.67
3001 4336 1.962807 CTGTTGGCCAATGAGAACCAA 59.037 47.619 23.66 0.00 39.81 3.67
3003 4338 1.337118 TTGGCCAATGAGAACCAACC 58.663 50.000 16.05 0.00 37.26 3.77
3004 4339 0.541764 TGGCCAATGAGAACCAACCC 60.542 55.000 0.61 0.00 0.00 4.11
3005 4340 0.541764 GGCCAATGAGAACCAACCCA 60.542 55.000 0.00 0.00 0.00 4.51
3006 4341 0.603065 GCCAATGAGAACCAACCCAC 59.397 55.000 0.00 0.00 0.00 4.61
3007 4342 0.881118 CCAATGAGAACCAACCCACG 59.119 55.000 0.00 0.00 0.00 4.94
3008 4343 0.240945 CAATGAGAACCAACCCACGC 59.759 55.000 0.00 0.00 0.00 5.34
3009 4344 0.110486 AATGAGAACCAACCCACGCT 59.890 50.000 0.00 0.00 0.00 5.07
3010 4345 0.606401 ATGAGAACCAACCCACGCTG 60.606 55.000 0.00 0.00 0.00 5.18
3011 4346 1.227853 GAGAACCAACCCACGCTGT 60.228 57.895 0.00 0.00 0.00 4.40
3012 4347 0.034337 GAGAACCAACCCACGCTGTA 59.966 55.000 0.00 0.00 0.00 2.74
3013 4348 0.470766 AGAACCAACCCACGCTGTAA 59.529 50.000 0.00 0.00 0.00 2.41
3014 4349 1.134037 AGAACCAACCCACGCTGTAAA 60.134 47.619 0.00 0.00 0.00 2.01
3015 4350 1.677052 GAACCAACCCACGCTGTAAAA 59.323 47.619 0.00 0.00 0.00 1.52
3016 4351 1.314730 ACCAACCCACGCTGTAAAAG 58.685 50.000 0.00 0.00 0.00 2.27
3032 4367 6.518208 TGTAAAAGCCTGTAAACTGTTTGT 57.482 33.333 15.69 0.00 0.00 2.83
3033 4368 7.627298 TGTAAAAGCCTGTAAACTGTTTGTA 57.373 32.000 15.69 3.94 0.00 2.41
3034 4369 7.474190 TGTAAAAGCCTGTAAACTGTTTGTAC 58.526 34.615 15.69 7.54 0.00 2.90
3035 4370 4.806342 AAGCCTGTAAACTGTTTGTACG 57.194 40.909 15.69 2.60 0.00 3.67
3036 4371 3.800531 AGCCTGTAAACTGTTTGTACGT 58.199 40.909 15.69 0.00 0.00 3.57
3542 4877 4.948062 AAATTTACCCCAGGAGCTTAGT 57.052 40.909 0.00 0.00 0.00 2.24
3543 4878 3.933861 ATTTACCCCAGGAGCTTAGTG 57.066 47.619 0.00 0.00 0.00 2.74
3544 4879 2.634639 TTACCCCAGGAGCTTAGTGA 57.365 50.000 0.00 0.00 0.00 3.41
3545 4880 2.868964 TACCCCAGGAGCTTAGTGAT 57.131 50.000 0.00 0.00 0.00 3.06
3546 4881 2.868964 ACCCCAGGAGCTTAGTGATA 57.131 50.000 0.00 0.00 0.00 2.15
3547 4882 2.399580 ACCCCAGGAGCTTAGTGATAC 58.600 52.381 0.00 0.00 0.00 2.24
3548 4883 2.022918 ACCCCAGGAGCTTAGTGATACT 60.023 50.000 0.00 0.00 0.00 2.12
3549 4884 3.041946 CCCCAGGAGCTTAGTGATACTT 58.958 50.000 0.00 0.00 0.00 2.24
3550 4885 3.070302 CCCCAGGAGCTTAGTGATACTTC 59.930 52.174 0.00 0.00 0.00 3.01
3551 4886 3.070302 CCCAGGAGCTTAGTGATACTTCC 59.930 52.174 0.00 0.00 0.00 3.46
3552 4887 3.964031 CCAGGAGCTTAGTGATACTTCCT 59.036 47.826 0.00 0.00 33.26 3.36
3553 4888 4.038642 CCAGGAGCTTAGTGATACTTCCTC 59.961 50.000 0.00 0.00 31.25 3.71
3554 4889 4.038642 CAGGAGCTTAGTGATACTTCCTCC 59.961 50.000 11.22 11.22 31.25 4.30
3555 4890 3.961408 GGAGCTTAGTGATACTTCCTCCA 59.039 47.826 12.99 0.00 36.45 3.86
3556 4891 4.591072 GGAGCTTAGTGATACTTCCTCCAT 59.409 45.833 12.99 0.00 36.45 3.41
3557 4892 5.279256 GGAGCTTAGTGATACTTCCTCCATC 60.279 48.000 12.99 0.00 36.45 3.51
3558 4893 5.463154 AGCTTAGTGATACTTCCTCCATCT 58.537 41.667 0.00 0.00 0.00 2.90
3559 4894 5.304101 AGCTTAGTGATACTTCCTCCATCTG 59.696 44.000 0.00 0.00 0.00 2.90
3560 4895 5.510520 GCTTAGTGATACTTCCTCCATCTGG 60.511 48.000 0.00 0.00 0.00 3.86
3561 4896 4.000928 AGTGATACTTCCTCCATCTGGT 57.999 45.455 0.00 0.00 36.34 4.00
3562 4897 3.708631 AGTGATACTTCCTCCATCTGGTG 59.291 47.826 0.00 0.00 36.34 4.17
3563 4898 3.452627 GTGATACTTCCTCCATCTGGTGT 59.547 47.826 0.00 0.00 36.34 4.16
3564 4899 4.649674 GTGATACTTCCTCCATCTGGTGTA 59.350 45.833 0.00 0.00 36.34 2.90
3565 4900 5.305644 GTGATACTTCCTCCATCTGGTGTAT 59.694 44.000 0.00 0.00 36.34 2.29
3566 4901 6.493802 GTGATACTTCCTCCATCTGGTGTATA 59.506 42.308 0.00 0.00 36.34 1.47
3567 4902 7.015292 GTGATACTTCCTCCATCTGGTGTATAA 59.985 40.741 0.00 0.00 36.34 0.98
3568 4903 5.878406 ACTTCCTCCATCTGGTGTATAAG 57.122 43.478 0.00 1.23 36.34 1.73
3569 4904 5.281314 ACTTCCTCCATCTGGTGTATAAGT 58.719 41.667 0.00 1.77 36.34 2.24
3570 4905 5.364157 ACTTCCTCCATCTGGTGTATAAGTC 59.636 44.000 0.00 0.00 36.34 3.01
3571 4906 4.878968 TCCTCCATCTGGTGTATAAGTCA 58.121 43.478 0.00 0.00 36.34 3.41
3572 4907 5.467738 TCCTCCATCTGGTGTATAAGTCAT 58.532 41.667 0.00 0.00 36.34 3.06
3573 4908 5.905331 TCCTCCATCTGGTGTATAAGTCATT 59.095 40.000 0.00 0.00 36.34 2.57
3574 4909 6.042093 TCCTCCATCTGGTGTATAAGTCATTC 59.958 42.308 0.00 0.00 36.34 2.67
3575 4910 5.842907 TCCATCTGGTGTATAAGTCATTCG 58.157 41.667 0.00 0.00 36.34 3.34
3576 4911 4.449068 CCATCTGGTGTATAAGTCATTCGC 59.551 45.833 0.00 0.00 0.00 4.70
3577 4912 4.729227 TCTGGTGTATAAGTCATTCGCA 57.271 40.909 0.00 0.00 0.00 5.10
3578 4913 4.682787 TCTGGTGTATAAGTCATTCGCAG 58.317 43.478 0.00 0.00 0.00 5.18
3579 4914 3.792401 TGGTGTATAAGTCATTCGCAGG 58.208 45.455 0.00 0.00 0.00 4.85
3580 4915 3.131396 GGTGTATAAGTCATTCGCAGGG 58.869 50.000 0.00 0.00 0.00 4.45
3581 4916 3.431766 GGTGTATAAGTCATTCGCAGGGT 60.432 47.826 0.00 0.00 0.00 4.34
3582 4917 4.189231 GTGTATAAGTCATTCGCAGGGTT 58.811 43.478 0.00 0.00 0.00 4.11
3583 4918 4.634443 GTGTATAAGTCATTCGCAGGGTTT 59.366 41.667 0.00 0.00 0.00 3.27
3584 4919 4.873827 TGTATAAGTCATTCGCAGGGTTTC 59.126 41.667 0.00 0.00 0.00 2.78
3585 4920 2.270352 AAGTCATTCGCAGGGTTTCA 57.730 45.000 0.00 0.00 0.00 2.69
3586 4921 1.813513 AGTCATTCGCAGGGTTTCAG 58.186 50.000 0.00 0.00 0.00 3.02
3587 4922 0.804989 GTCATTCGCAGGGTTTCAGG 59.195 55.000 0.00 0.00 0.00 3.86
3588 4923 0.400213 TCATTCGCAGGGTTTCAGGT 59.600 50.000 0.00 0.00 0.00 4.00
3589 4924 0.804989 CATTCGCAGGGTTTCAGGTC 59.195 55.000 0.00 0.00 0.00 3.85
3590 4925 0.400213 ATTCGCAGGGTTTCAGGTCA 59.600 50.000 0.00 0.00 0.00 4.02
3591 4926 0.400213 TTCGCAGGGTTTCAGGTCAT 59.600 50.000 0.00 0.00 0.00 3.06
3592 4927 0.036388 TCGCAGGGTTTCAGGTCATC 60.036 55.000 0.00 0.00 0.00 2.92
3593 4928 1.361668 CGCAGGGTTTCAGGTCATCG 61.362 60.000 0.00 0.00 0.00 3.84
3594 4929 0.036388 GCAGGGTTTCAGGTCATCGA 60.036 55.000 0.00 0.00 0.00 3.59
3595 4930 1.407437 GCAGGGTTTCAGGTCATCGAT 60.407 52.381 0.00 0.00 0.00 3.59
3596 4931 2.941415 GCAGGGTTTCAGGTCATCGATT 60.941 50.000 0.00 0.00 0.00 3.34
3597 4932 3.347216 CAGGGTTTCAGGTCATCGATTT 58.653 45.455 0.00 0.00 0.00 2.17
3598 4933 3.127548 CAGGGTTTCAGGTCATCGATTTG 59.872 47.826 0.00 0.00 0.00 2.32
3599 4934 3.009033 AGGGTTTCAGGTCATCGATTTGA 59.991 43.478 0.00 0.00 0.00 2.69
3600 4935 3.756434 GGGTTTCAGGTCATCGATTTGAA 59.244 43.478 0.00 1.34 0.00 2.69
3601 4936 4.142600 GGGTTTCAGGTCATCGATTTGAAG 60.143 45.833 0.00 0.00 0.00 3.02
3602 4937 4.695455 GGTTTCAGGTCATCGATTTGAAGA 59.305 41.667 0.00 0.00 0.00 2.87
3603 4938 5.181245 GGTTTCAGGTCATCGATTTGAAGAA 59.819 40.000 0.00 0.00 0.00 2.52
3604 4939 6.127897 GGTTTCAGGTCATCGATTTGAAGAAT 60.128 38.462 0.00 0.00 0.00 2.40
3605 4940 7.308435 GTTTCAGGTCATCGATTTGAAGAATT 58.692 34.615 0.00 0.00 0.00 2.17
3606 4941 8.450964 GTTTCAGGTCATCGATTTGAAGAATTA 58.549 33.333 0.00 0.00 0.00 1.40
3607 4942 7.776933 TCAGGTCATCGATTTGAAGAATTAG 57.223 36.000 0.00 0.00 0.00 1.73
3608 4943 7.555965 TCAGGTCATCGATTTGAAGAATTAGA 58.444 34.615 0.00 0.00 0.00 2.10
3609 4944 8.206867 TCAGGTCATCGATTTGAAGAATTAGAT 58.793 33.333 0.00 0.00 0.00 1.98
3610 4945 9.481340 CAGGTCATCGATTTGAAGAATTAGATA 57.519 33.333 0.00 0.00 0.00 1.98
3645 4980 9.935241 ATGTCATGAAAAGTATATCGCTAGATT 57.065 29.630 0.00 0.00 38.26 2.40
3646 4981 9.764363 TGTCATGAAAAGTATATCGCTAGATTT 57.236 29.630 0.00 0.00 38.26 2.17
3654 4989 8.516811 AAGTATATCGCTAGATTTTTACACGG 57.483 34.615 0.00 0.00 38.26 4.94
3655 4990 7.879070 AGTATATCGCTAGATTTTTACACGGA 58.121 34.615 0.00 0.00 38.26 4.69
3656 4991 8.521176 AGTATATCGCTAGATTTTTACACGGAT 58.479 33.333 0.00 0.00 38.26 4.18
3657 4992 5.907197 ATCGCTAGATTTTTACACGGATG 57.093 39.130 0.00 0.00 32.03 3.51
3658 4993 4.751060 TCGCTAGATTTTTACACGGATGT 58.249 39.130 0.00 0.00 43.30 3.06
3659 4994 5.893687 TCGCTAGATTTTTACACGGATGTA 58.106 37.500 0.00 0.00 40.48 2.29
3660 4995 5.975344 TCGCTAGATTTTTACACGGATGTAG 59.025 40.000 0.00 0.00 42.29 2.74
3661 4996 5.747197 CGCTAGATTTTTACACGGATGTAGT 59.253 40.000 0.00 0.00 42.29 2.73
3662 4997 6.255020 CGCTAGATTTTTACACGGATGTAGTT 59.745 38.462 0.00 0.00 42.29 2.24
3663 4998 7.201496 CGCTAGATTTTTACACGGATGTAGTTT 60.201 37.037 0.00 0.00 42.29 2.66
3664 4999 9.090692 GCTAGATTTTTACACGGATGTAGTTTA 57.909 33.333 0.00 0.00 42.29 2.01
3776 5111 9.932207 TTTAGATTGTTAAATTGTCGACCTAGA 57.068 29.630 14.12 0.00 0.00 2.43
3777 5112 7.829378 AGATTGTTAAATTGTCGACCTAGAC 57.171 36.000 14.12 5.14 41.30 2.59
3778 5113 6.817140 AGATTGTTAAATTGTCGACCTAGACC 59.183 38.462 14.12 0.00 40.26 3.85
3779 5114 5.733620 TGTTAAATTGTCGACCTAGACCT 57.266 39.130 14.12 0.00 40.26 3.85
3780 5115 6.839124 TGTTAAATTGTCGACCTAGACCTA 57.161 37.500 14.12 0.00 40.26 3.08
3781 5116 7.414222 TGTTAAATTGTCGACCTAGACCTAT 57.586 36.000 14.12 0.00 40.26 2.57
3782 5117 7.262772 TGTTAAATTGTCGACCTAGACCTATG 58.737 38.462 14.12 0.00 40.26 2.23
3783 5118 4.323553 AATTGTCGACCTAGACCTATGC 57.676 45.455 14.12 0.00 40.26 3.14
3784 5119 1.306148 TGTCGACCTAGACCTATGCG 58.694 55.000 14.12 0.00 40.26 4.73
3785 5120 1.134310 TGTCGACCTAGACCTATGCGA 60.134 52.381 14.12 0.00 40.26 5.10
3786 5121 1.945394 GTCGACCTAGACCTATGCGAA 59.055 52.381 3.51 0.00 35.22 4.70
3787 5122 2.553172 GTCGACCTAGACCTATGCGAAT 59.447 50.000 3.51 0.00 35.22 3.34
3788 5123 2.552743 TCGACCTAGACCTATGCGAATG 59.447 50.000 0.00 0.00 0.00 2.67
3789 5124 2.552743 CGACCTAGACCTATGCGAATGA 59.447 50.000 0.00 0.00 0.00 2.57
3790 5125 3.609644 CGACCTAGACCTATGCGAATGAC 60.610 52.174 0.00 0.00 0.00 3.06
3791 5126 3.567397 ACCTAGACCTATGCGAATGACT 58.433 45.455 0.00 0.00 0.00 3.41
3792 5127 3.961408 ACCTAGACCTATGCGAATGACTT 59.039 43.478 0.00 0.00 0.00 3.01
3793 5128 5.138276 ACCTAGACCTATGCGAATGACTTA 58.862 41.667 0.00 0.00 0.00 2.24
3794 5129 5.775701 ACCTAGACCTATGCGAATGACTTAT 59.224 40.000 0.00 0.00 0.00 1.73
3795 5130 6.946583 ACCTAGACCTATGCGAATGACTTATA 59.053 38.462 0.00 0.00 0.00 0.98
3796 5131 7.094291 ACCTAGACCTATGCGAATGACTTATAC 60.094 40.741 0.00 0.00 0.00 1.47
3797 5132 6.650427 AGACCTATGCGAATGACTTATACA 57.350 37.500 0.00 0.00 0.00 2.29
3798 5133 6.448006 AGACCTATGCGAATGACTTATACAC 58.552 40.000 0.00 0.00 0.00 2.90
3799 5134 5.539048 ACCTATGCGAATGACTTATACACC 58.461 41.667 0.00 0.00 0.00 4.16
3800 5135 5.069914 ACCTATGCGAATGACTTATACACCA 59.930 40.000 0.00 0.00 0.00 4.17
3801 5136 5.989168 CCTATGCGAATGACTTATACACCAA 59.011 40.000 0.00 0.00 0.00 3.67
3802 5137 5.991328 ATGCGAATGACTTATACACCAAG 57.009 39.130 0.00 0.00 0.00 3.61
3803 5138 4.188462 TGCGAATGACTTATACACCAAGG 58.812 43.478 0.00 0.00 0.00 3.61
3804 5139 4.081365 TGCGAATGACTTATACACCAAGGA 60.081 41.667 0.00 0.00 0.00 3.36
3805 5140 4.508124 GCGAATGACTTATACACCAAGGAG 59.492 45.833 0.00 0.00 0.00 3.69
3806 5141 5.050490 CGAATGACTTATACACCAAGGAGG 58.950 45.833 0.00 0.00 45.67 4.30
3822 5157 7.274603 CCAAGGAGGTAGTATACTAGTTGAC 57.725 44.000 12.99 3.63 42.51 3.18
3823 5158 6.264970 CCAAGGAGGTAGTATACTAGTTGACC 59.735 46.154 12.99 12.54 42.51 4.02
3824 5159 5.951204 AGGAGGTAGTATACTAGTTGACCC 58.049 45.833 12.99 9.44 42.51 4.46
3825 5160 4.759183 GGAGGTAGTATACTAGTTGACCCG 59.241 50.000 12.99 0.00 42.51 5.28
3826 5161 5.372373 GAGGTAGTATACTAGTTGACCCGT 58.628 45.833 12.99 1.63 42.51 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.484806 ACGTTGTCAGGCCCACCA 61.485 61.111 0.00 0.00 39.06 4.17
15 16 5.220381 GTGAAGATCTAACTCACGTTGTCA 58.780 41.667 9.65 0.00 34.59 3.58
22 23 5.889289 AGGTAGAGGTGAAGATCTAACTCAC 59.111 44.000 15.00 15.00 41.21 3.51
128 129 8.338072 TCTCGTAAATAAGAGAAGACAAGTCT 57.662 34.615 3.98 0.00 40.18 3.24
276 288 5.050490 GCATGTATCGTGGTTGATAAGACT 58.950 41.667 0.00 0.00 32.88 3.24
343 355 8.398665 GTCCACCAAATACTTATTGATCTTGAC 58.601 37.037 0.00 0.00 0.00 3.18
383 396 4.392619 TTTTTATGTTACCTCGCACACG 57.607 40.909 0.00 0.00 42.01 4.49
434 448 3.107601 AGATGTTGCCCTAGCTCAAGTA 58.892 45.455 0.00 0.00 40.80 2.24
727 743 7.986889 GGCATGTGGATAAAAATGTTAGGAATT 59.013 33.333 0.00 0.00 0.00 2.17
823 929 9.062524 GGTATAATGTAGCCATGTATTCAACAA 57.937 33.333 0.00 0.00 42.70 2.83
883 1024 2.977169 GCAACATACGCGACAATTGTTT 59.023 40.909 15.93 0.00 0.00 2.83
910 1051 2.906354 AGAGTGTCACACTTGGTTCAC 58.094 47.619 12.92 0.00 45.44 3.18
999 1164 6.668718 TGGTAACGTTGGGGCTCATATATATA 59.331 38.462 11.99 0.00 42.51 0.86
1000 1165 5.486063 TGGTAACGTTGGGGCTCATATATAT 59.514 40.000 11.99 0.00 42.51 0.86
1011 1176 2.218603 GAGCATATGGTAACGTTGGGG 58.781 52.381 11.99 0.00 42.51 4.96
1157 1542 3.352338 CTAGGACGGTGGTGGCGAC 62.352 68.421 0.00 0.00 0.00 5.19
1268 1653 0.178068 GCGTATTGCTCCAGGAAGGA 59.822 55.000 0.00 0.00 46.75 3.36
1269 1654 1.154205 CGCGTATTGCTCCAGGAAGG 61.154 60.000 0.00 0.00 43.27 3.46
1444 1846 2.925170 ACGCCCCAGCTTCTGACT 60.925 61.111 0.00 0.00 36.60 3.41
2556 3346 4.007659 ACCTAAATCACCGCTTACAAAGG 58.992 43.478 0.00 0.00 0.00 3.11
2638 3428 3.239941 CGTTCGACAAATAGATCCGACAC 59.760 47.826 0.00 0.00 0.00 3.67
2649 3439 4.759516 ATGCTTTAACCGTTCGACAAAT 57.240 36.364 0.00 0.00 0.00 2.32
2803 4131 4.816385 TCAGAAACAAGGTTGCTACAAGAG 59.184 41.667 0.00 0.00 0.00 2.85
2869 4204 2.504175 TCTTTGTATGTCTAGCACCCCC 59.496 50.000 0.00 0.00 0.00 5.40
2870 4205 3.906720 TCTTTGTATGTCTAGCACCCC 57.093 47.619 0.00 0.00 0.00 4.95
2871 4206 6.124088 CAAATCTTTGTATGTCTAGCACCC 57.876 41.667 0.00 0.00 33.59 4.61
2885 4220 6.921307 AGTTTACCGGCTTTTACAAATCTTTG 59.079 34.615 0.00 1.19 43.62 2.77
2886 4221 6.921307 CAGTTTACCGGCTTTTACAAATCTTT 59.079 34.615 0.00 0.00 0.00 2.52
2887 4222 6.040054 ACAGTTTACCGGCTTTTACAAATCTT 59.960 34.615 0.00 0.00 0.00 2.40
2888 4223 5.533528 ACAGTTTACCGGCTTTTACAAATCT 59.466 36.000 0.00 0.00 0.00 2.40
2889 4224 5.765176 ACAGTTTACCGGCTTTTACAAATC 58.235 37.500 0.00 0.00 0.00 2.17
2890 4225 5.777850 ACAGTTTACCGGCTTTTACAAAT 57.222 34.783 0.00 0.00 0.00 2.32
2891 4226 5.579564 AACAGTTTACCGGCTTTTACAAA 57.420 34.783 0.00 0.00 0.00 2.83
2892 4227 5.450274 GGAAACAGTTTACCGGCTTTTACAA 60.450 40.000 0.00 0.00 0.00 2.41
2893 4228 4.036616 GGAAACAGTTTACCGGCTTTTACA 59.963 41.667 0.00 0.00 0.00 2.41
2894 4229 4.036616 TGGAAACAGTTTACCGGCTTTTAC 59.963 41.667 0.00 0.00 35.01 2.01
2895 4230 4.205587 TGGAAACAGTTTACCGGCTTTTA 58.794 39.130 0.00 0.00 35.01 1.52
2896 4231 3.025262 TGGAAACAGTTTACCGGCTTTT 58.975 40.909 0.00 0.00 35.01 2.27
2897 4232 2.657143 TGGAAACAGTTTACCGGCTTT 58.343 42.857 0.00 0.00 35.01 3.51
2898 4233 2.351706 TGGAAACAGTTTACCGGCTT 57.648 45.000 0.00 0.00 35.01 4.35
2911 4246 9.705290 ATTTGTAATTGGTTGTTAGATGGAAAC 57.295 29.630 0.00 0.00 0.00 2.78
2912 4247 9.921637 GATTTGTAATTGGTTGTTAGATGGAAA 57.078 29.630 0.00 0.00 0.00 3.13
2913 4248 9.308000 AGATTTGTAATTGGTTGTTAGATGGAA 57.692 29.630 0.00 0.00 0.00 3.53
2914 4249 8.877864 AGATTTGTAATTGGTTGTTAGATGGA 57.122 30.769 0.00 0.00 0.00 3.41
2915 4250 8.960591 AGAGATTTGTAATTGGTTGTTAGATGG 58.039 33.333 0.00 0.00 0.00 3.51
2916 4251 9.994432 GAGAGATTTGTAATTGGTTGTTAGATG 57.006 33.333 0.00 0.00 0.00 2.90
2917 4252 9.178758 GGAGAGATTTGTAATTGGTTGTTAGAT 57.821 33.333 0.00 0.00 0.00 1.98
2918 4253 7.610305 GGGAGAGATTTGTAATTGGTTGTTAGA 59.390 37.037 0.00 0.00 0.00 2.10
2919 4254 7.148069 GGGGAGAGATTTGTAATTGGTTGTTAG 60.148 40.741 0.00 0.00 0.00 2.34
2920 4255 6.661805 GGGGAGAGATTTGTAATTGGTTGTTA 59.338 38.462 0.00 0.00 0.00 2.41
2921 4256 5.480422 GGGGAGAGATTTGTAATTGGTTGTT 59.520 40.000 0.00 0.00 0.00 2.83
2922 4257 5.016831 GGGGAGAGATTTGTAATTGGTTGT 58.983 41.667 0.00 0.00 0.00 3.32
2923 4258 4.402474 GGGGGAGAGATTTGTAATTGGTTG 59.598 45.833 0.00 0.00 0.00 3.77
2924 4259 4.045334 TGGGGGAGAGATTTGTAATTGGTT 59.955 41.667 0.00 0.00 0.00 3.67
2925 4260 3.596046 TGGGGGAGAGATTTGTAATTGGT 59.404 43.478 0.00 0.00 0.00 3.67
2926 4261 3.954258 GTGGGGGAGAGATTTGTAATTGG 59.046 47.826 0.00 0.00 0.00 3.16
2927 4262 4.641989 CAGTGGGGGAGAGATTTGTAATTG 59.358 45.833 0.00 0.00 0.00 2.32
2928 4263 4.540099 TCAGTGGGGGAGAGATTTGTAATT 59.460 41.667 0.00 0.00 0.00 1.40
2929 4264 4.111577 TCAGTGGGGGAGAGATTTGTAAT 58.888 43.478 0.00 0.00 0.00 1.89
2930 4265 3.526899 TCAGTGGGGGAGAGATTTGTAA 58.473 45.455 0.00 0.00 0.00 2.41
2931 4266 3.199442 TCAGTGGGGGAGAGATTTGTA 57.801 47.619 0.00 0.00 0.00 2.41
2932 4267 2.044793 TCAGTGGGGGAGAGATTTGT 57.955 50.000 0.00 0.00 0.00 2.83
2933 4268 3.659183 AATCAGTGGGGGAGAGATTTG 57.341 47.619 0.00 0.00 0.00 2.32
2934 4269 4.044571 TGAAAATCAGTGGGGGAGAGATTT 59.955 41.667 0.00 0.00 39.74 2.17
2935 4270 3.593328 TGAAAATCAGTGGGGGAGAGATT 59.407 43.478 0.00 0.00 0.00 2.40
2936 4271 3.192944 TGAAAATCAGTGGGGGAGAGAT 58.807 45.455 0.00 0.00 0.00 2.75
2937 4272 2.573462 CTGAAAATCAGTGGGGGAGAGA 59.427 50.000 0.00 0.00 39.58 3.10
2938 4273 2.356535 CCTGAAAATCAGTGGGGGAGAG 60.357 54.545 6.62 0.00 42.80 3.20
2939 4274 1.635487 CCTGAAAATCAGTGGGGGAGA 59.365 52.381 6.62 0.00 42.80 3.71
2940 4275 1.635487 TCCTGAAAATCAGTGGGGGAG 59.365 52.381 6.62 0.00 42.80 4.30
2941 4276 1.635487 CTCCTGAAAATCAGTGGGGGA 59.365 52.381 6.62 0.00 42.80 4.81
2942 4277 1.341383 CCTCCTGAAAATCAGTGGGGG 60.341 57.143 6.62 0.00 42.80 5.40
2943 4278 1.635487 TCCTCCTGAAAATCAGTGGGG 59.365 52.381 6.62 7.33 42.80 4.96
2944 4279 3.285484 CATCCTCCTGAAAATCAGTGGG 58.715 50.000 6.62 7.74 42.80 4.61
2945 4280 3.285484 CCATCCTCCTGAAAATCAGTGG 58.715 50.000 6.62 8.06 42.80 4.00
2946 4281 3.285484 CCCATCCTCCTGAAAATCAGTG 58.715 50.000 6.62 0.00 42.80 3.66
2947 4282 2.357569 GCCCATCCTCCTGAAAATCAGT 60.358 50.000 6.62 0.00 42.80 3.41
2948 4283 2.305009 GCCCATCCTCCTGAAAATCAG 58.695 52.381 0.32 0.32 43.91 2.90
2949 4284 1.063717 GGCCCATCCTCCTGAAAATCA 60.064 52.381 0.00 0.00 0.00 2.57
2950 4285 1.697284 GGCCCATCCTCCTGAAAATC 58.303 55.000 0.00 0.00 0.00 2.17
2951 4286 0.106519 CGGCCCATCCTCCTGAAAAT 60.107 55.000 0.00 0.00 0.00 1.82
2952 4287 1.302949 CGGCCCATCCTCCTGAAAA 59.697 57.895 0.00 0.00 0.00 2.29
2953 4288 1.910580 GACGGCCCATCCTCCTGAAA 61.911 60.000 0.00 0.00 0.00 2.69
2954 4289 2.285368 ACGGCCCATCCTCCTGAA 60.285 61.111 0.00 0.00 0.00 3.02
2955 4290 2.764128 GACGGCCCATCCTCCTGA 60.764 66.667 0.00 0.00 0.00 3.86
2956 4291 3.866582 GGACGGCCCATCCTCCTG 61.867 72.222 12.66 0.00 32.60 3.86
2957 4292 4.095400 AGGACGGCCCATCCTCCT 62.095 66.667 16.17 6.14 43.49 3.69
2958 4293 3.866582 CAGGACGGCCCATCCTCC 61.867 72.222 18.58 5.27 45.25 4.30
2959 4294 4.554036 GCAGGACGGCCCATCCTC 62.554 72.222 18.58 10.96 45.25 3.71
2961 4296 4.554036 GAGCAGGACGGCCCATCC 62.554 72.222 1.76 12.11 37.41 3.51
2962 4297 3.785859 TGAGCAGGACGGCCCATC 61.786 66.667 1.76 0.00 37.41 3.51
2963 4298 4.101448 GTGAGCAGGACGGCCCAT 62.101 66.667 1.76 0.00 37.41 4.00
2966 4301 4.767255 CAGGTGAGCAGGACGGCC 62.767 72.222 0.00 0.00 0.00 6.13
2967 4302 3.537206 AACAGGTGAGCAGGACGGC 62.537 63.158 0.00 0.00 0.00 5.68
2968 4303 1.669115 CAACAGGTGAGCAGGACGG 60.669 63.158 0.00 0.00 0.00 4.79
2969 4304 1.669115 CCAACAGGTGAGCAGGACG 60.669 63.158 0.00 0.00 0.00 4.79
2970 4305 1.968540 GCCAACAGGTGAGCAGGAC 60.969 63.158 0.00 0.00 0.00 3.85
2971 4306 2.431683 GCCAACAGGTGAGCAGGA 59.568 61.111 0.00 0.00 0.00 3.86
2972 4307 2.674380 GGCCAACAGGTGAGCAGG 60.674 66.667 0.00 0.00 0.00 4.85
2973 4308 0.896940 ATTGGCCAACAGGTGAGCAG 60.897 55.000 23.27 0.00 0.00 4.24
2974 4309 1.153524 ATTGGCCAACAGGTGAGCA 59.846 52.632 23.27 0.00 0.00 4.26
2975 4310 0.895100 TCATTGGCCAACAGGTGAGC 60.895 55.000 23.27 0.00 0.00 4.26
2976 4311 1.171308 CTCATTGGCCAACAGGTGAG 58.829 55.000 25.04 25.04 37.34 3.51
2977 4312 0.770499 TCTCATTGGCCAACAGGTGA 59.230 50.000 23.27 19.24 0.00 4.02
2978 4313 1.270550 GTTCTCATTGGCCAACAGGTG 59.729 52.381 23.27 15.67 0.00 4.00
2979 4314 1.620822 GTTCTCATTGGCCAACAGGT 58.379 50.000 23.27 0.70 0.00 4.00
2980 4315 0.890683 GGTTCTCATTGGCCAACAGG 59.109 55.000 23.27 13.81 0.00 4.00
2981 4316 1.619654 TGGTTCTCATTGGCCAACAG 58.380 50.000 23.27 19.53 0.00 3.16
2982 4317 2.079170 TTGGTTCTCATTGGCCAACA 57.921 45.000 23.27 9.67 36.23 3.33
2984 4319 1.337118 GGTTGGTTCTCATTGGCCAA 58.663 50.000 23.00 23.00 38.51 4.52
2985 4320 0.541764 GGGTTGGTTCTCATTGGCCA 60.542 55.000 0.00 0.00 0.00 5.36
2986 4321 0.541764 TGGGTTGGTTCTCATTGGCC 60.542 55.000 0.00 0.00 0.00 5.36
2987 4322 0.603065 GTGGGTTGGTTCTCATTGGC 59.397 55.000 0.00 0.00 0.00 4.52
2988 4323 0.881118 CGTGGGTTGGTTCTCATTGG 59.119 55.000 0.00 0.00 0.00 3.16
2989 4324 0.240945 GCGTGGGTTGGTTCTCATTG 59.759 55.000 0.00 0.00 0.00 2.82
2990 4325 0.110486 AGCGTGGGTTGGTTCTCATT 59.890 50.000 0.00 0.00 0.00 2.57
2991 4326 0.606401 CAGCGTGGGTTGGTTCTCAT 60.606 55.000 0.00 0.00 0.00 2.90
2992 4327 1.227823 CAGCGTGGGTTGGTTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
2993 4328 0.034337 TACAGCGTGGGTTGGTTCTC 59.966 55.000 0.00 0.00 0.00 2.87
2994 4329 0.470766 TTACAGCGTGGGTTGGTTCT 59.529 50.000 0.00 0.00 0.00 3.01
2995 4330 1.310904 TTTACAGCGTGGGTTGGTTC 58.689 50.000 0.00 0.00 0.00 3.62
2996 4331 1.679153 CTTTTACAGCGTGGGTTGGTT 59.321 47.619 0.00 0.00 0.00 3.67
2997 4332 1.314730 CTTTTACAGCGTGGGTTGGT 58.685 50.000 0.00 0.00 0.00 3.67
2998 4333 0.039527 GCTTTTACAGCGTGGGTTGG 60.040 55.000 0.00 0.00 39.29 3.77
2999 4334 3.472263 GCTTTTACAGCGTGGGTTG 57.528 52.632 0.00 0.00 39.29 3.77
3008 4343 6.560711 ACAAACAGTTTACAGGCTTTTACAG 58.439 36.000 0.00 0.00 0.00 2.74
3009 4344 6.518208 ACAAACAGTTTACAGGCTTTTACA 57.482 33.333 0.00 0.00 0.00 2.41
3010 4345 6.630045 CGTACAAACAGTTTACAGGCTTTTAC 59.370 38.462 0.00 0.00 0.00 2.01
3011 4346 6.315891 ACGTACAAACAGTTTACAGGCTTTTA 59.684 34.615 0.00 0.00 0.00 1.52
3012 4347 5.124297 ACGTACAAACAGTTTACAGGCTTTT 59.876 36.000 0.00 0.00 0.00 2.27
3013 4348 4.637091 ACGTACAAACAGTTTACAGGCTTT 59.363 37.500 0.00 0.00 0.00 3.51
3014 4349 4.193865 ACGTACAAACAGTTTACAGGCTT 58.806 39.130 0.00 0.00 0.00 4.35
3015 4350 3.800531 ACGTACAAACAGTTTACAGGCT 58.199 40.909 0.00 0.00 0.00 4.58
3521 4856 4.291249 TCACTAAGCTCCTGGGGTAAATTT 59.709 41.667 0.00 0.00 0.00 1.82
3522 4857 3.850173 TCACTAAGCTCCTGGGGTAAATT 59.150 43.478 0.00 0.00 0.00 1.82
3523 4858 3.460825 TCACTAAGCTCCTGGGGTAAAT 58.539 45.455 0.00 0.00 0.00 1.40
3524 4859 2.910544 TCACTAAGCTCCTGGGGTAAA 58.089 47.619 0.00 0.00 0.00 2.01
3525 4860 2.634639 TCACTAAGCTCCTGGGGTAA 57.365 50.000 0.00 0.00 0.00 2.85
3526 4861 2.868964 ATCACTAAGCTCCTGGGGTA 57.131 50.000 0.00 0.00 0.00 3.69
3527 4862 2.022918 AGTATCACTAAGCTCCTGGGGT 60.023 50.000 0.00 0.00 0.00 4.95
3528 4863 2.683768 AGTATCACTAAGCTCCTGGGG 58.316 52.381 0.00 0.00 0.00 4.96
3529 4864 3.070302 GGAAGTATCACTAAGCTCCTGGG 59.930 52.174 0.00 0.00 0.00 4.45
3530 4865 3.964031 AGGAAGTATCACTAAGCTCCTGG 59.036 47.826 0.00 0.00 32.17 4.45
3531 4866 4.038642 GGAGGAAGTATCACTAAGCTCCTG 59.961 50.000 2.72 0.00 33.21 3.86
3532 4867 4.219919 GGAGGAAGTATCACTAAGCTCCT 58.780 47.826 0.00 0.00 35.15 3.69
3533 4868 3.961408 TGGAGGAAGTATCACTAAGCTCC 59.039 47.826 0.00 0.00 31.11 4.70
3534 4869 5.538433 AGATGGAGGAAGTATCACTAAGCTC 59.462 44.000 0.00 0.00 0.00 4.09
3535 4870 5.304101 CAGATGGAGGAAGTATCACTAAGCT 59.696 44.000 0.00 0.00 0.00 3.74
3536 4871 5.510520 CCAGATGGAGGAAGTATCACTAAGC 60.511 48.000 0.00 0.00 37.39 3.09
3537 4872 5.600484 ACCAGATGGAGGAAGTATCACTAAG 59.400 44.000 5.72 0.00 38.94 2.18
3538 4873 5.363868 CACCAGATGGAGGAAGTATCACTAA 59.636 44.000 5.72 0.00 38.94 2.24
3539 4874 4.895889 CACCAGATGGAGGAAGTATCACTA 59.104 45.833 5.72 0.00 38.94 2.74
3540 4875 3.708631 CACCAGATGGAGGAAGTATCACT 59.291 47.826 5.72 0.00 38.94 3.41
3541 4876 3.452627 ACACCAGATGGAGGAAGTATCAC 59.547 47.826 5.72 0.00 38.94 3.06
3542 4877 3.724478 ACACCAGATGGAGGAAGTATCA 58.276 45.455 5.72 0.00 38.94 2.15
3543 4878 7.233757 ACTTATACACCAGATGGAGGAAGTATC 59.766 40.741 5.72 0.00 38.94 2.24
3544 4879 7.076446 ACTTATACACCAGATGGAGGAAGTAT 58.924 38.462 5.72 7.99 38.94 2.12
3545 4880 6.441222 ACTTATACACCAGATGGAGGAAGTA 58.559 40.000 5.72 1.41 38.94 2.24
3546 4881 5.281314 ACTTATACACCAGATGGAGGAAGT 58.719 41.667 5.72 6.75 38.94 3.01
3547 4882 5.363868 TGACTTATACACCAGATGGAGGAAG 59.636 44.000 5.72 6.18 38.94 3.46
3548 4883 5.277250 TGACTTATACACCAGATGGAGGAA 58.723 41.667 5.72 0.00 38.94 3.36
3549 4884 4.878968 TGACTTATACACCAGATGGAGGA 58.121 43.478 5.72 0.00 38.94 3.71
3550 4885 5.815233 ATGACTTATACACCAGATGGAGG 57.185 43.478 5.72 0.00 38.94 4.30
3551 4886 5.923114 CGAATGACTTATACACCAGATGGAG 59.077 44.000 5.72 0.00 38.94 3.86
3552 4887 5.739070 GCGAATGACTTATACACCAGATGGA 60.739 44.000 5.72 0.00 38.94 3.41
3553 4888 4.449068 GCGAATGACTTATACACCAGATGG 59.551 45.833 0.00 0.00 42.17 3.51
3554 4889 5.049828 TGCGAATGACTTATACACCAGATG 58.950 41.667 0.00 0.00 0.00 2.90
3555 4890 5.276461 TGCGAATGACTTATACACCAGAT 57.724 39.130 0.00 0.00 0.00 2.90
3556 4891 4.441495 CCTGCGAATGACTTATACACCAGA 60.441 45.833 0.00 0.00 0.00 3.86
3557 4892 3.804325 CCTGCGAATGACTTATACACCAG 59.196 47.826 0.00 0.00 0.00 4.00
3558 4893 3.431626 CCCTGCGAATGACTTATACACCA 60.432 47.826 0.00 0.00 0.00 4.17
3559 4894 3.131396 CCCTGCGAATGACTTATACACC 58.869 50.000 0.00 0.00 0.00 4.16
3560 4895 3.793559 ACCCTGCGAATGACTTATACAC 58.206 45.455 0.00 0.00 0.00 2.90
3561 4896 4.481368 AACCCTGCGAATGACTTATACA 57.519 40.909 0.00 0.00 0.00 2.29
3562 4897 4.873827 TGAAACCCTGCGAATGACTTATAC 59.126 41.667 0.00 0.00 0.00 1.47
3563 4898 5.092554 TGAAACCCTGCGAATGACTTATA 57.907 39.130 0.00 0.00 0.00 0.98
3564 4899 3.941483 CTGAAACCCTGCGAATGACTTAT 59.059 43.478 0.00 0.00 0.00 1.73
3565 4900 3.334691 CTGAAACCCTGCGAATGACTTA 58.665 45.455 0.00 0.00 0.00 2.24
3566 4901 2.154462 CTGAAACCCTGCGAATGACTT 58.846 47.619 0.00 0.00 0.00 3.01
3567 4902 1.611673 CCTGAAACCCTGCGAATGACT 60.612 52.381 0.00 0.00 0.00 3.41
3568 4903 0.804989 CCTGAAACCCTGCGAATGAC 59.195 55.000 0.00 0.00 0.00 3.06
3569 4904 0.400213 ACCTGAAACCCTGCGAATGA 59.600 50.000 0.00 0.00 0.00 2.57
3570 4905 0.804989 GACCTGAAACCCTGCGAATG 59.195 55.000 0.00 0.00 0.00 2.67
3571 4906 0.400213 TGACCTGAAACCCTGCGAAT 59.600 50.000 0.00 0.00 0.00 3.34
3572 4907 0.400213 ATGACCTGAAACCCTGCGAA 59.600 50.000 0.00 0.00 0.00 4.70
3573 4908 0.036388 GATGACCTGAAACCCTGCGA 60.036 55.000 0.00 0.00 0.00 5.10
3574 4909 1.361668 CGATGACCTGAAACCCTGCG 61.362 60.000 0.00 0.00 0.00 5.18
3575 4910 0.036388 TCGATGACCTGAAACCCTGC 60.036 55.000 0.00 0.00 0.00 4.85
3576 4911 2.698855 ATCGATGACCTGAAACCCTG 57.301 50.000 0.00 0.00 0.00 4.45
3577 4912 3.009033 TCAAATCGATGACCTGAAACCCT 59.991 43.478 0.00 0.00 0.00 4.34
3578 4913 3.343617 TCAAATCGATGACCTGAAACCC 58.656 45.455 0.00 0.00 0.00 4.11
3579 4914 4.695455 TCTTCAAATCGATGACCTGAAACC 59.305 41.667 0.00 0.00 0.00 3.27
3580 4915 5.862924 TCTTCAAATCGATGACCTGAAAC 57.137 39.130 0.00 0.00 0.00 2.78
3581 4916 7.452880 AATTCTTCAAATCGATGACCTGAAA 57.547 32.000 0.00 0.00 0.00 2.69
3582 4917 8.040727 TCTAATTCTTCAAATCGATGACCTGAA 58.959 33.333 0.00 5.59 0.00 3.02
3583 4918 7.555965 TCTAATTCTTCAAATCGATGACCTGA 58.444 34.615 0.00 0.00 0.00 3.86
3584 4919 7.776933 TCTAATTCTTCAAATCGATGACCTG 57.223 36.000 0.00 0.00 0.00 4.00
3619 4954 9.935241 AATCTAGCGATATACTTTTCATGACAT 57.065 29.630 0.00 0.00 0.00 3.06
3620 4955 9.764363 AAATCTAGCGATATACTTTTCATGACA 57.236 29.630 0.00 0.00 0.00 3.58
3628 4963 8.975439 CCGTGTAAAAATCTAGCGATATACTTT 58.025 33.333 0.00 0.00 0.00 2.66
3629 4964 8.355169 TCCGTGTAAAAATCTAGCGATATACTT 58.645 33.333 0.00 0.00 0.00 2.24
3630 4965 7.879070 TCCGTGTAAAAATCTAGCGATATACT 58.121 34.615 0.00 0.00 0.00 2.12
3631 4966 8.584600 CATCCGTGTAAAAATCTAGCGATATAC 58.415 37.037 0.00 0.00 0.00 1.47
3632 4967 8.301720 ACATCCGTGTAAAAATCTAGCGATATA 58.698 33.333 0.00 0.00 36.63 0.86
3633 4968 7.152645 ACATCCGTGTAAAAATCTAGCGATAT 58.847 34.615 0.00 0.00 36.63 1.63
3634 4969 6.509656 ACATCCGTGTAAAAATCTAGCGATA 58.490 36.000 0.00 0.00 36.63 2.92
3635 4970 5.357257 ACATCCGTGTAAAAATCTAGCGAT 58.643 37.500 0.00 0.00 36.63 4.58
3636 4971 4.751060 ACATCCGTGTAAAAATCTAGCGA 58.249 39.130 0.00 0.00 36.63 4.93
3637 4972 5.747197 ACTACATCCGTGTAAAAATCTAGCG 59.253 40.000 0.00 0.00 40.16 4.26
3638 4973 7.535489 AACTACATCCGTGTAAAAATCTAGC 57.465 36.000 0.00 0.00 40.16 3.42
3750 5085 9.932207 TCTAGGTCGACAATTTAACAATCTAAA 57.068 29.630 18.91 0.00 0.00 1.85
3751 5086 9.362539 GTCTAGGTCGACAATTTAACAATCTAA 57.637 33.333 18.91 0.00 34.11 2.10
3752 5087 7.977853 GGTCTAGGTCGACAATTTAACAATCTA 59.022 37.037 18.91 3.94 35.63 1.98
3753 5088 6.817140 GGTCTAGGTCGACAATTTAACAATCT 59.183 38.462 18.91 2.88 35.63 2.40
3754 5089 6.817140 AGGTCTAGGTCGACAATTTAACAATC 59.183 38.462 18.91 0.00 35.63 2.67
3755 5090 6.708285 AGGTCTAGGTCGACAATTTAACAAT 58.292 36.000 18.91 0.00 35.63 2.71
3756 5091 6.105397 AGGTCTAGGTCGACAATTTAACAA 57.895 37.500 18.91 0.00 35.63 2.83
3757 5092 5.733620 AGGTCTAGGTCGACAATTTAACA 57.266 39.130 18.91 0.00 35.63 2.41
3758 5093 6.200475 GCATAGGTCTAGGTCGACAATTTAAC 59.800 42.308 18.91 7.14 35.63 2.01
3759 5094 6.278363 GCATAGGTCTAGGTCGACAATTTAA 58.722 40.000 18.91 0.00 35.63 1.52
3760 5095 5.506815 CGCATAGGTCTAGGTCGACAATTTA 60.507 44.000 18.91 3.24 35.63 1.40
3761 5096 4.694339 GCATAGGTCTAGGTCGACAATTT 58.306 43.478 18.91 2.13 35.63 1.82
3762 5097 3.243434 CGCATAGGTCTAGGTCGACAATT 60.243 47.826 18.91 4.78 35.63 2.32
3763 5098 2.293677 CGCATAGGTCTAGGTCGACAAT 59.706 50.000 18.91 7.85 35.63 2.71
3764 5099 1.674441 CGCATAGGTCTAGGTCGACAA 59.326 52.381 18.91 3.61 35.63 3.18
3765 5100 1.134310 TCGCATAGGTCTAGGTCGACA 60.134 52.381 18.91 0.00 35.63 4.35
3766 5101 1.590932 TCGCATAGGTCTAGGTCGAC 58.409 55.000 7.13 7.13 0.00 4.20
3767 5102 2.336945 TTCGCATAGGTCTAGGTCGA 57.663 50.000 0.00 5.58 0.00 4.20
3768 5103 2.552743 TCATTCGCATAGGTCTAGGTCG 59.447 50.000 0.00 0.00 0.00 4.79
3769 5104 3.570550 AGTCATTCGCATAGGTCTAGGTC 59.429 47.826 0.00 0.00 0.00 3.85
3770 5105 3.567397 AGTCATTCGCATAGGTCTAGGT 58.433 45.455 0.00 0.00 0.00 3.08
3771 5106 4.592485 AAGTCATTCGCATAGGTCTAGG 57.408 45.455 0.00 0.00 0.00 3.02
3772 5107 7.751348 GTGTATAAGTCATTCGCATAGGTCTAG 59.249 40.741 0.00 0.00 0.00 2.43
3773 5108 7.309012 GGTGTATAAGTCATTCGCATAGGTCTA 60.309 40.741 0.00 0.00 0.00 2.59
3774 5109 6.448006 GTGTATAAGTCATTCGCATAGGTCT 58.552 40.000 0.00 0.00 0.00 3.85
3775 5110 5.634020 GGTGTATAAGTCATTCGCATAGGTC 59.366 44.000 0.00 0.00 0.00 3.85
3776 5111 5.069914 TGGTGTATAAGTCATTCGCATAGGT 59.930 40.000 0.00 0.00 0.00 3.08
3777 5112 5.538118 TGGTGTATAAGTCATTCGCATAGG 58.462 41.667 0.00 0.00 0.00 2.57
3778 5113 6.146184 CCTTGGTGTATAAGTCATTCGCATAG 59.854 42.308 0.00 0.00 0.00 2.23
3779 5114 5.989168 CCTTGGTGTATAAGTCATTCGCATA 59.011 40.000 0.00 0.00 0.00 3.14
3780 5115 4.816385 CCTTGGTGTATAAGTCATTCGCAT 59.184 41.667 0.00 0.00 0.00 4.73
3781 5116 4.081365 TCCTTGGTGTATAAGTCATTCGCA 60.081 41.667 0.00 0.00 0.00 5.10
3782 5117 4.439057 TCCTTGGTGTATAAGTCATTCGC 58.561 43.478 0.00 0.00 0.00 4.70
3783 5118 5.050490 CCTCCTTGGTGTATAAGTCATTCG 58.950 45.833 0.00 0.00 0.00 3.34
3798 5133 6.264970 GGTCAACTAGTATACTACCTCCTTGG 59.735 46.154 8.59 0.00 42.93 3.61
3799 5134 6.264970 GGGTCAACTAGTATACTACCTCCTTG 59.735 46.154 17.41 10.42 0.00 3.61
3800 5135 6.372104 GGGTCAACTAGTATACTACCTCCTT 58.628 44.000 17.41 0.99 0.00 3.36
3801 5136 5.455899 CGGGTCAACTAGTATACTACCTCCT 60.456 48.000 17.41 0.00 0.00 3.69
3802 5137 4.759183 CGGGTCAACTAGTATACTACCTCC 59.241 50.000 17.41 11.51 0.00 4.30
3803 5138 5.372373 ACGGGTCAACTAGTATACTACCTC 58.628 45.833 17.41 9.54 0.00 3.85
3804 5139 5.379706 ACGGGTCAACTAGTATACTACCT 57.620 43.478 17.41 3.28 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.