Multiple sequence alignment - TraesCS6B01G308500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G308500 chr6B 100.000 2558 0 0 1 2558 552404444 552407001 0.000000e+00 4724.0
1 TraesCS6B01G308500 chr6B 86.378 323 18 7 1143 1463 495540764 495541062 1.900000e-86 329.0
2 TraesCS6B01G308500 chr6B 96.183 131 5 0 1143 1273 657261015 657261145 5.540000e-52 215.0
3 TraesCS6B01G308500 chr6D 88.030 2289 130 78 340 2555 366683891 366686108 0.000000e+00 2577.0
4 TraesCS6B01G308500 chr6A 82.816 2095 167 84 358 2356 507122099 507124096 0.000000e+00 1696.0
5 TraesCS6B01G308500 chr6A 86.432 199 13 2 1143 1341 220742675 220742859 3.340000e-49 206.0
6 TraesCS6B01G308500 chr6A 82.581 155 14 7 2411 2552 507124102 507124256 9.610000e-25 124.0
7 TraesCS6B01G308500 chr5A 92.548 577 28 4 1793 2363 49964388 49963821 0.000000e+00 813.0
8 TraesCS6B01G308500 chr5A 94.595 296 16 0 49 344 456354197 456353902 2.320000e-125 459.0
9 TraesCS6B01G308500 chr5A 95.812 191 8 0 1383 1573 49965691 49965501 2.470000e-80 309.0
10 TraesCS6B01G308500 chr5A 96.000 175 5 1 1627 1799 49965499 49965325 1.500000e-72 283.0
11 TraesCS6B01G308500 chr5A 88.043 184 8 2 1143 1326 600293964 600294133 3.340000e-49 206.0
12 TraesCS6B01G308500 chrUn 91.032 591 27 9 1793 2363 311244764 311244180 0.000000e+00 774.0
13 TraesCS6B01G308500 chrUn 91.032 591 27 9 1793 2363 410091035 410091619 0.000000e+00 774.0
14 TraesCS6B01G308500 chrUn 98.693 153 2 0 1627 1779 287696619 287696771 3.240000e-69 272.0
15 TraesCS6B01G308500 chrUn 98.693 153 2 0 1627 1779 287708823 287708975 3.240000e-69 272.0
16 TraesCS6B01G308500 chrUn 98.693 153 2 0 1627 1779 294704836 294704988 3.240000e-69 272.0
17 TraesCS6B01G308500 chrUn 97.656 128 3 0 1446 1573 287696490 287696617 1.190000e-53 220.0
18 TraesCS6B01G308500 chrUn 97.656 128 3 0 1446 1573 287708694 287708821 1.190000e-53 220.0
19 TraesCS6B01G308500 chrUn 97.656 128 3 0 1446 1573 294704707 294704834 1.190000e-53 220.0
20 TraesCS6B01G308500 chrUn 100.000 34 0 0 1408 1441 287696463 287696496 2.120000e-06 63.9
21 TraesCS6B01G308500 chrUn 100.000 34 0 0 1408 1441 287708667 287708700 2.120000e-06 63.9
22 TraesCS6B01G308500 chr2B 91.017 590 26 13 1793 2361 239860856 239861439 0.000000e+00 771.0
23 TraesCS6B01G308500 chr2B 97.701 174 3 1 1627 1799 239858839 239859012 5.350000e-77 298.0
24 TraesCS6B01G308500 chr2B 81.677 322 17 10 1143 1463 5028976 5029256 1.980000e-56 230.0
25 TraesCS6B01G308500 chr2B 96.875 128 4 0 1446 1573 239858710 239858837 5.540000e-52 215.0
26 TraesCS6B01G308500 chr2B 97.500 40 0 1 2297 2335 38210904 38210943 1.640000e-07 67.6
27 TraesCS6B01G308500 chr1B 90.694 591 29 8 1793 2363 605568264 605568848 0.000000e+00 763.0
28 TraesCS6B01G308500 chr1B 95.578 294 12 1 48 340 512141050 512141343 1.070000e-128 470.0
29 TraesCS6B01G308500 chr1B 95.848 289 12 0 52 340 296806695 296806983 3.850000e-128 468.0
30 TraesCS6B01G308500 chr1B 94.595 296 16 0 49 344 463502145 463502440 2.320000e-125 459.0
31 TraesCS6B01G308500 chr1B 86.136 339 19 6 1143 1479 32787996 32787684 8.770000e-90 340.0
32 TraesCS6B01G308500 chr1B 97.126 174 4 1 1627 1799 605566250 605566423 2.490000e-75 292.0
33 TraesCS6B01G308500 chr1B 95.690 116 5 0 1458 1573 605566133 605566248 1.210000e-43 187.0
34 TraesCS6B01G308500 chr1A 96.246 293 10 1 48 340 15511197 15510906 1.780000e-131 479.0
35 TraesCS6B01G308500 chr1A 87.978 183 8 2 1144 1326 96740289 96740457 1.200000e-48 204.0
36 TraesCS6B01G308500 chr4B 96.167 287 11 0 54 340 387885410 387885124 1.070000e-128 470.0
37 TraesCS6B01G308500 chr4B 94.595 296 16 0 49 344 379766688 379766983 2.320000e-125 459.0
38 TraesCS6B01G308500 chr4B 92.683 41 3 0 1312 1352 37175641 37175601 2.750000e-05 60.2
39 TraesCS6B01G308500 chr7B 95.533 291 13 0 50 340 718852549 718852259 1.390000e-127 466.0
40 TraesCS6B01G308500 chr7B 94.595 296 16 0 49 344 150612245 150612540 2.320000e-125 459.0
41 TraesCS6B01G308500 chr3B 87.812 320 16 2 1144 1463 654436487 654436191 1.130000e-93 353.0
42 TraesCS6B01G308500 chr1D 87.382 317 17 4 1143 1459 35863005 35863298 2.440000e-90 342.0
43 TraesCS6B01G308500 chr1D 92.308 104 4 3 1262 1363 9855363 9855464 7.380000e-31 145.0
44 TraesCS6B01G308500 chr7A 87.500 184 9 2 1143 1326 717181726 717181557 1.550000e-47 200.0
45 TraesCS6B01G308500 chr7D 94.595 111 6 0 1232 1342 138313036 138313146 3.380000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G308500 chr6B 552404444 552407001 2557 False 4724.000000 4724 100.000000 1 2558 1 chr6B.!!$F2 2557
1 TraesCS6B01G308500 chr6D 366683891 366686108 2217 False 2577.000000 2577 88.030000 340 2555 1 chr6D.!!$F1 2215
2 TraesCS6B01G308500 chr6A 507122099 507124256 2157 False 910.000000 1696 82.698500 358 2552 2 chr6A.!!$F2 2194
3 TraesCS6B01G308500 chr5A 49963821 49965691 1870 True 468.333333 813 94.786667 1383 2363 3 chr5A.!!$R2 980
4 TraesCS6B01G308500 chrUn 311244180 311244764 584 True 774.000000 774 91.032000 1793 2363 1 chrUn.!!$R1 570
5 TraesCS6B01G308500 chrUn 410091035 410091619 584 False 774.000000 774 91.032000 1793 2363 1 chrUn.!!$F1 570
6 TraesCS6B01G308500 chr2B 239858710 239861439 2729 False 428.000000 771 95.197667 1446 2361 3 chr2B.!!$F3 915
7 TraesCS6B01G308500 chr1B 605566133 605568848 2715 False 414.000000 763 94.503333 1458 2363 3 chr1B.!!$F4 905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.029567 CGAAGCTAGGAGTAGGTGCG 59.97 60.0 0.0 0.0 46.64 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1755 0.029567 GATCTCGCGGACACTACCAG 59.97 60.0 6.13 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.559698 TCATCAAAGGTTCCAGCGAA 57.440 45.000 0.00 0.00 0.00 4.70
20 21 2.426522 TCATCAAAGGTTCCAGCGAAG 58.573 47.619 0.00 0.00 0.00 3.79
34 35 3.949031 CGAAGCTAGGAGTAGGTGC 57.051 57.895 0.00 0.00 37.07 5.01
35 36 0.029567 CGAAGCTAGGAGTAGGTGCG 59.970 60.000 0.00 0.00 46.64 5.34
36 37 1.390565 GAAGCTAGGAGTAGGTGCGA 58.609 55.000 0.00 0.00 37.07 5.10
37 38 1.749634 GAAGCTAGGAGTAGGTGCGAA 59.250 52.381 0.00 0.00 37.07 4.70
38 39 1.394618 AGCTAGGAGTAGGTGCGAAG 58.605 55.000 0.00 0.00 35.60 3.79
39 40 0.386113 GCTAGGAGTAGGTGCGAAGG 59.614 60.000 0.00 0.00 0.00 3.46
40 41 1.033574 CTAGGAGTAGGTGCGAAGGG 58.966 60.000 0.00 0.00 0.00 3.95
41 42 0.396695 TAGGAGTAGGTGCGAAGGGG 60.397 60.000 0.00 0.00 0.00 4.79
42 43 2.732619 GGAGTAGGTGCGAAGGGGG 61.733 68.421 0.00 0.00 0.00 5.40
43 44 3.387225 GAGTAGGTGCGAAGGGGGC 62.387 68.421 0.00 0.00 0.00 5.80
44 45 4.484872 GTAGGTGCGAAGGGGGCC 62.485 72.222 0.00 0.00 0.00 5.80
54 55 2.041819 AGGGGGCCGTCCTCTTAG 60.042 66.667 10.19 0.00 46.53 2.18
55 56 2.042230 GGGGGCCGTCCTCTTAGA 60.042 66.667 6.51 0.00 31.63 2.10
56 57 2.134933 GGGGGCCGTCCTCTTAGAG 61.135 68.421 1.56 1.56 31.63 2.43
57 58 2.798364 GGGGCCGTCCTCTTAGAGC 61.798 68.421 3.26 0.00 35.33 4.09
58 59 2.058595 GGGCCGTCCTCTTAGAGCA 61.059 63.158 3.26 0.00 0.00 4.26
59 60 1.403687 GGGCCGTCCTCTTAGAGCAT 61.404 60.000 3.26 0.00 0.00 3.79
60 61 0.249657 GGCCGTCCTCTTAGAGCATG 60.250 60.000 3.26 0.00 0.00 4.06
61 62 0.249657 GCCGTCCTCTTAGAGCATGG 60.250 60.000 7.05 7.05 0.00 3.66
62 63 1.115467 CCGTCCTCTTAGAGCATGGT 58.885 55.000 3.28 0.00 0.00 3.55
63 64 1.482593 CCGTCCTCTTAGAGCATGGTT 59.517 52.381 3.28 0.00 0.00 3.67
64 65 2.693591 CCGTCCTCTTAGAGCATGGTTA 59.306 50.000 3.28 0.00 0.00 2.85
65 66 3.132289 CCGTCCTCTTAGAGCATGGTTAA 59.868 47.826 3.28 0.00 0.00 2.01
66 67 4.202264 CCGTCCTCTTAGAGCATGGTTAAT 60.202 45.833 3.28 0.00 0.00 1.40
67 68 5.010719 CCGTCCTCTTAGAGCATGGTTAATA 59.989 44.000 3.28 0.00 0.00 0.98
68 69 6.462487 CCGTCCTCTTAGAGCATGGTTAATAA 60.462 42.308 3.28 0.00 0.00 1.40
69 70 7.155328 CGTCCTCTTAGAGCATGGTTAATAAT 58.845 38.462 3.26 0.00 0.00 1.28
70 71 8.304596 CGTCCTCTTAGAGCATGGTTAATAATA 58.695 37.037 3.26 0.00 0.00 0.98
76 77 9.890629 CTTAGAGCATGGTTAATAATATAGCCA 57.109 33.333 0.00 0.00 39.96 4.75
77 78 9.890629 TTAGAGCATGGTTAATAATATAGCCAG 57.109 33.333 0.00 0.00 39.18 4.85
78 79 6.825721 AGAGCATGGTTAATAATATAGCCAGC 59.174 38.462 0.00 0.00 39.18 4.85
79 80 6.725364 AGCATGGTTAATAATATAGCCAGCT 58.275 36.000 0.00 0.00 39.18 4.24
80 81 6.600822 AGCATGGTTAATAATATAGCCAGCTG 59.399 38.462 6.78 6.78 39.18 4.24
81 82 6.678900 GCATGGTTAATAATATAGCCAGCTGC 60.679 42.308 8.66 3.91 39.18 5.25
97 98 3.826236 GCTGCTGGCTATATGATGTTG 57.174 47.619 0.00 0.00 38.06 3.33
98 99 2.095364 GCTGCTGGCTATATGATGTTGC 60.095 50.000 0.00 0.00 38.06 4.17
99 100 2.486982 CTGCTGGCTATATGATGTTGCC 59.513 50.000 7.62 7.62 43.49 4.52
104 105 4.691860 GGCTATATGATGTTGCCATGTC 57.308 45.455 9.49 0.00 42.79 3.06
105 106 4.074259 GGCTATATGATGTTGCCATGTCA 58.926 43.478 9.49 0.00 42.79 3.58
106 107 4.083110 GGCTATATGATGTTGCCATGTCAC 60.083 45.833 9.49 0.00 42.79 3.67
107 108 4.516321 GCTATATGATGTTGCCATGTCACA 59.484 41.667 0.00 0.00 0.00 3.58
108 109 5.182570 GCTATATGATGTTGCCATGTCACAT 59.817 40.000 2.20 2.20 0.00 3.21
109 110 6.372381 GCTATATGATGTTGCCATGTCACATA 59.628 38.462 0.00 0.00 0.00 2.29
110 111 7.066645 GCTATATGATGTTGCCATGTCACATAT 59.933 37.037 0.00 0.00 35.13 1.78
111 112 9.603921 CTATATGATGTTGCCATGTCACATATA 57.396 33.333 0.00 0.00 33.65 0.86
112 113 6.812879 ATGATGTTGCCATGTCACATATAG 57.187 37.500 0.00 0.00 0.00 1.31
113 114 5.683681 TGATGTTGCCATGTCACATATAGT 58.316 37.500 0.00 0.00 0.00 2.12
114 115 6.121590 TGATGTTGCCATGTCACATATAGTT 58.878 36.000 0.00 0.00 0.00 2.24
115 116 7.278875 TGATGTTGCCATGTCACATATAGTTA 58.721 34.615 0.00 0.00 0.00 2.24
116 117 7.772757 TGATGTTGCCATGTCACATATAGTTAA 59.227 33.333 0.00 0.00 0.00 2.01
117 118 7.552458 TGTTGCCATGTCACATATAGTTAAG 57.448 36.000 0.00 0.00 0.00 1.85
118 119 6.038161 TGTTGCCATGTCACATATAGTTAAGC 59.962 38.462 0.00 0.00 0.00 3.09
119 120 5.928976 TGCCATGTCACATATAGTTAAGCT 58.071 37.500 0.00 0.00 0.00 3.74
120 121 6.356556 TGCCATGTCACATATAGTTAAGCTT 58.643 36.000 3.48 3.48 0.00 3.74
121 122 7.505258 TGCCATGTCACATATAGTTAAGCTTA 58.495 34.615 0.86 0.86 0.00 3.09
122 123 8.156820 TGCCATGTCACATATAGTTAAGCTTAT 58.843 33.333 7.08 0.00 0.00 1.73
123 124 9.653287 GCCATGTCACATATAGTTAAGCTTATA 57.347 33.333 7.08 0.00 0.00 0.98
126 127 9.877178 ATGTCACATATAGTTAAGCTTATAGCC 57.123 33.333 7.08 0.00 43.77 3.93
127 128 8.866093 TGTCACATATAGTTAAGCTTATAGCCA 58.134 33.333 7.08 0.00 43.77 4.75
128 129 9.706691 GTCACATATAGTTAAGCTTATAGCCAA 57.293 33.333 7.08 0.00 43.77 4.52
129 130 9.706691 TCACATATAGTTAAGCTTATAGCCAAC 57.293 33.333 7.08 3.15 43.77 3.77
130 131 9.489084 CACATATAGTTAAGCTTATAGCCAACA 57.511 33.333 7.08 0.00 43.77 3.33
135 136 7.845066 AGTTAAGCTTATAGCCAACAAGTAC 57.155 36.000 7.08 0.00 43.77 2.73
136 137 7.391620 AGTTAAGCTTATAGCCAACAAGTACA 58.608 34.615 7.08 0.00 43.77 2.90
137 138 7.881232 AGTTAAGCTTATAGCCAACAAGTACAA 59.119 33.333 7.08 0.00 43.77 2.41
138 139 8.674607 GTTAAGCTTATAGCCAACAAGTACAAT 58.325 33.333 7.08 0.00 43.77 2.71
139 140 9.893634 TTAAGCTTATAGCCAACAAGTACAATA 57.106 29.630 7.08 0.00 43.77 1.90
140 141 8.438676 AAGCTTATAGCCAACAAGTACAATAG 57.561 34.615 0.00 0.00 43.77 1.73
141 142 6.483640 AGCTTATAGCCAACAAGTACAATAGC 59.516 38.462 0.00 0.00 43.77 2.97
142 143 6.483640 GCTTATAGCCAACAAGTACAATAGCT 59.516 38.462 0.00 0.00 34.48 3.32
143 144 7.519008 GCTTATAGCCAACAAGTACAATAGCTG 60.519 40.741 0.00 0.00 34.48 4.24
144 145 3.347216 AGCCAACAAGTACAATAGCTGG 58.653 45.455 0.00 0.00 0.00 4.85
145 146 3.009033 AGCCAACAAGTACAATAGCTGGA 59.991 43.478 0.00 0.00 0.00 3.86
146 147 3.947834 GCCAACAAGTACAATAGCTGGAT 59.052 43.478 0.00 0.00 0.00 3.41
147 148 5.104527 AGCCAACAAGTACAATAGCTGGATA 60.105 40.000 0.00 0.00 0.00 2.59
148 149 5.765182 GCCAACAAGTACAATAGCTGGATAT 59.235 40.000 0.00 0.00 0.00 1.63
149 150 6.934645 GCCAACAAGTACAATAGCTGGATATA 59.065 38.462 0.00 0.00 0.00 0.86
150 151 7.444183 GCCAACAAGTACAATAGCTGGATATAA 59.556 37.037 0.00 0.00 0.00 0.98
151 152 9.337396 CCAACAAGTACAATAGCTGGATATAAA 57.663 33.333 0.00 0.00 0.00 1.40
178 179 7.328277 TGTACTATTTTGTTGATACATGGCC 57.672 36.000 0.00 0.00 33.44 5.36
179 180 5.852282 ACTATTTTGTTGATACATGGCCC 57.148 39.130 0.00 0.00 33.44 5.80
180 181 5.268387 ACTATTTTGTTGATACATGGCCCA 58.732 37.500 0.00 0.00 33.44 5.36
181 182 3.951775 TTTTGTTGATACATGGCCCAC 57.048 42.857 0.00 0.00 33.44 4.61
182 183 1.846007 TTGTTGATACATGGCCCACC 58.154 50.000 0.00 0.00 33.44 4.61
183 184 0.033601 TGTTGATACATGGCCCACCC 60.034 55.000 0.00 0.00 33.59 4.61
184 185 0.755327 GTTGATACATGGCCCACCCC 60.755 60.000 0.00 0.00 33.59 4.95
185 186 1.217747 TTGATACATGGCCCACCCCA 61.218 55.000 0.00 0.00 39.65 4.96
186 187 1.152756 GATACATGGCCCACCCCAC 60.153 63.158 0.00 0.00 37.79 4.61
187 188 1.622442 ATACATGGCCCACCCCACT 60.622 57.895 0.00 0.00 37.79 4.00
188 189 1.645402 ATACATGGCCCACCCCACTC 61.645 60.000 0.00 0.00 37.79 3.51
189 190 2.781258 TACATGGCCCACCCCACTCT 62.781 60.000 0.00 0.00 37.79 3.24
190 191 3.017581 ATGGCCCACCCCACTCTC 61.018 66.667 0.00 0.00 37.79 3.20
191 192 3.586225 ATGGCCCACCCCACTCTCT 62.586 63.158 0.00 0.00 37.79 3.10
192 193 3.403558 GGCCCACCCCACTCTCTC 61.404 72.222 0.00 0.00 0.00 3.20
193 194 2.607750 GCCCACCCCACTCTCTCA 60.608 66.667 0.00 0.00 0.00 3.27
194 195 2.960688 GCCCACCCCACTCTCTCAC 61.961 68.421 0.00 0.00 0.00 3.51
195 196 1.536418 CCCACCCCACTCTCTCACA 60.536 63.158 0.00 0.00 0.00 3.58
196 197 1.127567 CCCACCCCACTCTCTCACAA 61.128 60.000 0.00 0.00 0.00 3.33
197 198 0.764890 CCACCCCACTCTCTCACAAA 59.235 55.000 0.00 0.00 0.00 2.83
198 199 1.271054 CCACCCCACTCTCTCACAAAG 60.271 57.143 0.00 0.00 0.00 2.77
199 200 1.417890 CACCCCACTCTCTCACAAAGT 59.582 52.381 0.00 0.00 0.00 2.66
200 201 2.632996 CACCCCACTCTCTCACAAAGTA 59.367 50.000 0.00 0.00 0.00 2.24
201 202 2.633481 ACCCCACTCTCTCACAAAGTAC 59.367 50.000 0.00 0.00 0.00 2.73
202 203 2.028020 CCCCACTCTCTCACAAAGTACC 60.028 54.545 0.00 0.00 0.00 3.34
203 204 2.900546 CCCACTCTCTCACAAAGTACCT 59.099 50.000 0.00 0.00 0.00 3.08
204 205 4.087182 CCCACTCTCTCACAAAGTACCTA 58.913 47.826 0.00 0.00 0.00 3.08
205 206 4.158764 CCCACTCTCTCACAAAGTACCTAG 59.841 50.000 0.00 0.00 0.00 3.02
206 207 4.158764 CCACTCTCTCACAAAGTACCTAGG 59.841 50.000 7.41 7.41 0.00 3.02
207 208 5.010933 CACTCTCTCACAAAGTACCTAGGA 58.989 45.833 17.98 0.00 0.00 2.94
208 209 5.124776 CACTCTCTCACAAAGTACCTAGGAG 59.875 48.000 17.98 0.00 0.00 3.69
209 210 4.017808 TCTCTCACAAAGTACCTAGGAGC 58.982 47.826 17.98 7.53 0.00 4.70
210 211 3.764434 CTCTCACAAAGTACCTAGGAGCA 59.236 47.826 17.98 0.00 0.00 4.26
211 212 3.510360 TCTCACAAAGTACCTAGGAGCAC 59.490 47.826 17.98 10.17 0.00 4.40
212 213 2.230508 TCACAAAGTACCTAGGAGCACG 59.769 50.000 17.98 1.47 0.00 5.34
213 214 2.029290 CACAAAGTACCTAGGAGCACGT 60.029 50.000 17.98 5.69 0.00 4.49
214 215 2.029290 ACAAAGTACCTAGGAGCACGTG 60.029 50.000 17.98 12.28 0.00 4.49
215 216 1.920610 AAGTACCTAGGAGCACGTGT 58.079 50.000 17.98 3.69 0.00 4.49
216 217 1.920610 AGTACCTAGGAGCACGTGTT 58.079 50.000 17.98 11.90 0.00 3.32
217 218 1.544691 AGTACCTAGGAGCACGTGTTG 59.455 52.381 17.98 0.97 0.00 3.33
218 219 1.271656 GTACCTAGGAGCACGTGTTGT 59.728 52.381 17.98 7.46 0.00 3.32
219 220 1.624336 ACCTAGGAGCACGTGTTGTA 58.376 50.000 17.98 4.26 0.00 2.41
220 221 1.544691 ACCTAGGAGCACGTGTTGTAG 59.455 52.381 17.98 13.31 0.00 2.74
221 222 1.630148 CTAGGAGCACGTGTTGTAGC 58.370 55.000 18.38 0.54 0.00 3.58
222 223 0.245539 TAGGAGCACGTGTTGTAGCC 59.754 55.000 18.38 8.58 0.00 3.93
223 224 2.380410 GGAGCACGTGTTGTAGCCG 61.380 63.158 18.38 0.00 0.00 5.52
224 225 2.357034 AGCACGTGTTGTAGCCGG 60.357 61.111 18.38 0.00 0.00 6.13
225 226 4.084888 GCACGTGTTGTAGCCGGC 62.085 66.667 21.89 21.89 0.00 6.13
226 227 2.357034 CACGTGTTGTAGCCGGCT 60.357 61.111 34.85 34.85 0.00 5.52
227 228 2.357034 ACGTGTTGTAGCCGGCTG 60.357 61.111 38.98 22.17 0.00 4.85
228 229 2.357034 CGTGTTGTAGCCGGCTGT 60.357 61.111 38.98 17.24 0.00 4.40
229 230 1.959226 CGTGTTGTAGCCGGCTGTT 60.959 57.895 38.98 16.38 0.00 3.16
230 231 0.668096 CGTGTTGTAGCCGGCTGTTA 60.668 55.000 38.98 21.27 0.00 2.41
231 232 1.515081 GTGTTGTAGCCGGCTGTTAA 58.485 50.000 38.98 25.55 0.00 2.01
232 233 1.196127 GTGTTGTAGCCGGCTGTTAAC 59.804 52.381 38.98 33.23 0.00 2.01
233 234 1.071071 TGTTGTAGCCGGCTGTTAACT 59.929 47.619 38.98 13.82 0.00 2.24
234 235 2.299582 TGTTGTAGCCGGCTGTTAACTA 59.700 45.455 38.98 22.10 0.00 2.24
235 236 2.928116 GTTGTAGCCGGCTGTTAACTAG 59.072 50.000 38.98 4.14 0.00 2.57
236 237 2.173519 TGTAGCCGGCTGTTAACTAGT 58.826 47.619 38.98 11.29 0.00 2.57
237 238 3.355378 TGTAGCCGGCTGTTAACTAGTA 58.645 45.455 38.98 12.17 0.00 1.82
238 239 3.379372 TGTAGCCGGCTGTTAACTAGTAG 59.621 47.826 38.98 0.00 0.00 2.57
239 240 1.136500 AGCCGGCTGTTAACTAGTAGC 59.864 52.381 32.33 6.80 35.49 3.58
243 244 1.568606 GCTGTTAACTAGTAGCCCGC 58.431 55.000 7.22 0.00 0.00 6.13
244 245 1.136500 GCTGTTAACTAGTAGCCCGCT 59.864 52.381 7.22 0.00 0.00 5.52
245 246 2.418334 GCTGTTAACTAGTAGCCCGCTT 60.418 50.000 7.22 0.00 0.00 4.68
246 247 3.858247 CTGTTAACTAGTAGCCCGCTTT 58.142 45.455 7.22 0.00 0.00 3.51
247 248 4.251268 CTGTTAACTAGTAGCCCGCTTTT 58.749 43.478 7.22 0.00 0.00 2.27
248 249 4.248058 TGTTAACTAGTAGCCCGCTTTTC 58.752 43.478 7.22 0.00 0.00 2.29
249 250 4.020839 TGTTAACTAGTAGCCCGCTTTTCT 60.021 41.667 7.22 0.00 0.00 2.52
250 251 3.697619 AACTAGTAGCCCGCTTTTCTT 57.302 42.857 0.00 0.00 0.00 2.52
251 252 3.248495 ACTAGTAGCCCGCTTTTCTTC 57.752 47.619 0.00 0.00 0.00 2.87
252 253 2.832733 ACTAGTAGCCCGCTTTTCTTCT 59.167 45.455 0.00 0.00 0.00 2.85
253 254 2.388310 AGTAGCCCGCTTTTCTTCTC 57.612 50.000 0.00 0.00 0.00 2.87
254 255 1.903183 AGTAGCCCGCTTTTCTTCTCT 59.097 47.619 0.00 0.00 0.00 3.10
255 256 2.093921 AGTAGCCCGCTTTTCTTCTCTC 60.094 50.000 0.00 0.00 0.00 3.20
256 257 0.980423 AGCCCGCTTTTCTTCTCTCT 59.020 50.000 0.00 0.00 0.00 3.10
257 258 1.066502 AGCCCGCTTTTCTTCTCTCTC 60.067 52.381 0.00 0.00 0.00 3.20
258 259 2.009542 GCCCGCTTTTCTTCTCTCTCC 61.010 57.143 0.00 0.00 0.00 3.71
259 260 1.552792 CCCGCTTTTCTTCTCTCTCCT 59.447 52.381 0.00 0.00 0.00 3.69
260 261 2.761208 CCCGCTTTTCTTCTCTCTCCTA 59.239 50.000 0.00 0.00 0.00 2.94
261 262 3.386402 CCCGCTTTTCTTCTCTCTCCTAT 59.614 47.826 0.00 0.00 0.00 2.57
262 263 4.141824 CCCGCTTTTCTTCTCTCTCCTATT 60.142 45.833 0.00 0.00 0.00 1.73
263 264 5.047188 CCGCTTTTCTTCTCTCTCCTATTC 58.953 45.833 0.00 0.00 0.00 1.75
264 265 5.163457 CCGCTTTTCTTCTCTCTCCTATTCT 60.163 44.000 0.00 0.00 0.00 2.40
265 266 5.977129 CGCTTTTCTTCTCTCTCCTATTCTC 59.023 44.000 0.00 0.00 0.00 2.87
266 267 6.183360 CGCTTTTCTTCTCTCTCCTATTCTCT 60.183 42.308 0.00 0.00 0.00 3.10
267 268 7.203218 GCTTTTCTTCTCTCTCCTATTCTCTC 58.797 42.308 0.00 0.00 0.00 3.20
268 269 7.068716 GCTTTTCTTCTCTCTCCTATTCTCTCT 59.931 40.741 0.00 0.00 0.00 3.10
269 270 8.519799 TTTTCTTCTCTCTCCTATTCTCTCTC 57.480 38.462 0.00 0.00 0.00 3.20
270 271 7.451731 TTCTTCTCTCTCCTATTCTCTCTCT 57.548 40.000 0.00 0.00 0.00 3.10
271 272 7.451731 TCTTCTCTCTCCTATTCTCTCTCTT 57.548 40.000 0.00 0.00 0.00 2.85
272 273 7.509546 TCTTCTCTCTCCTATTCTCTCTCTTC 58.490 42.308 0.00 0.00 0.00 2.87
273 274 6.187727 TCTCTCTCCTATTCTCTCTCTTCC 57.812 45.833 0.00 0.00 0.00 3.46
274 275 5.669904 TCTCTCTCCTATTCTCTCTCTTCCA 59.330 44.000 0.00 0.00 0.00 3.53
275 276 6.159575 TCTCTCTCCTATTCTCTCTCTTCCAA 59.840 42.308 0.00 0.00 0.00 3.53
276 277 6.736581 TCTCTCCTATTCTCTCTCTTCCAAA 58.263 40.000 0.00 0.00 0.00 3.28
277 278 7.361438 TCTCTCCTATTCTCTCTCTTCCAAAT 58.639 38.462 0.00 0.00 0.00 2.32
278 279 8.506921 TCTCTCCTATTCTCTCTCTTCCAAATA 58.493 37.037 0.00 0.00 0.00 1.40
279 280 9.142014 CTCTCCTATTCTCTCTCTTCCAAATAA 57.858 37.037 0.00 0.00 0.00 1.40
280 281 9.142014 TCTCCTATTCTCTCTCTTCCAAATAAG 57.858 37.037 0.00 0.00 0.00 1.73
281 282 7.731054 TCCTATTCTCTCTCTTCCAAATAAGC 58.269 38.462 0.00 0.00 0.00 3.09
282 283 7.345653 TCCTATTCTCTCTCTTCCAAATAAGCA 59.654 37.037 0.00 0.00 0.00 3.91
283 284 7.989741 CCTATTCTCTCTCTTCCAAATAAGCAA 59.010 37.037 0.00 0.00 0.00 3.91
284 285 7.862512 ATTCTCTCTCTTCCAAATAAGCAAG 57.137 36.000 0.00 0.00 0.00 4.01
285 286 6.611613 TCTCTCTCTTCCAAATAAGCAAGA 57.388 37.500 0.00 0.00 0.00 3.02
286 287 7.009179 TCTCTCTCTTCCAAATAAGCAAGAA 57.991 36.000 0.00 0.00 0.00 2.52
287 288 7.628234 TCTCTCTCTTCCAAATAAGCAAGAAT 58.372 34.615 0.00 0.00 0.00 2.40
288 289 8.762645 TCTCTCTCTTCCAAATAAGCAAGAATA 58.237 33.333 0.00 0.00 0.00 1.75
289 290 9.558396 CTCTCTCTTCCAAATAAGCAAGAATAT 57.442 33.333 0.00 0.00 0.00 1.28
313 314 5.941948 ATATTTAATGTCTTACAGCCCGC 57.058 39.130 0.00 0.00 0.00 6.13
314 315 2.032680 TTAATGTCTTACAGCCCGCC 57.967 50.000 0.00 0.00 0.00 6.13
315 316 1.200519 TAATGTCTTACAGCCCGCCT 58.799 50.000 0.00 0.00 0.00 5.52
316 317 1.200519 AATGTCTTACAGCCCGCCTA 58.799 50.000 0.00 0.00 0.00 3.93
317 318 0.464452 ATGTCTTACAGCCCGCCTAC 59.536 55.000 0.00 0.00 0.00 3.18
318 319 0.901114 TGTCTTACAGCCCGCCTACA 60.901 55.000 0.00 0.00 0.00 2.74
319 320 0.464452 GTCTTACAGCCCGCCTACAT 59.536 55.000 0.00 0.00 0.00 2.29
320 321 0.750850 TCTTACAGCCCGCCTACATC 59.249 55.000 0.00 0.00 0.00 3.06
321 322 0.464036 CTTACAGCCCGCCTACATCA 59.536 55.000 0.00 0.00 0.00 3.07
322 323 0.177141 TTACAGCCCGCCTACATCAC 59.823 55.000 0.00 0.00 0.00 3.06
323 324 0.686441 TACAGCCCGCCTACATCACT 60.686 55.000 0.00 0.00 0.00 3.41
324 325 1.221840 CAGCCCGCCTACATCACTT 59.778 57.895 0.00 0.00 0.00 3.16
325 326 0.392998 CAGCCCGCCTACATCACTTT 60.393 55.000 0.00 0.00 0.00 2.66
326 327 1.134521 CAGCCCGCCTACATCACTTTA 60.135 52.381 0.00 0.00 0.00 1.85
327 328 1.768870 AGCCCGCCTACATCACTTTAT 59.231 47.619 0.00 0.00 0.00 1.40
328 329 2.172717 AGCCCGCCTACATCACTTTATT 59.827 45.455 0.00 0.00 0.00 1.40
329 330 2.290641 GCCCGCCTACATCACTTTATTG 59.709 50.000 0.00 0.00 0.00 1.90
330 331 3.541632 CCCGCCTACATCACTTTATTGT 58.458 45.455 0.00 0.00 0.00 2.71
331 332 4.699637 CCCGCCTACATCACTTTATTGTA 58.300 43.478 0.00 0.00 0.00 2.41
332 333 4.510340 CCCGCCTACATCACTTTATTGTAC 59.490 45.833 0.00 0.00 0.00 2.90
333 334 5.357257 CCGCCTACATCACTTTATTGTACT 58.643 41.667 0.00 0.00 0.00 2.73
334 335 5.815740 CCGCCTACATCACTTTATTGTACTT 59.184 40.000 0.00 0.00 0.00 2.24
335 336 6.238103 CCGCCTACATCACTTTATTGTACTTG 60.238 42.308 0.00 0.00 0.00 3.16
336 337 6.487103 GCCTACATCACTTTATTGTACTTGC 58.513 40.000 0.00 0.00 0.00 4.01
337 338 6.316390 GCCTACATCACTTTATTGTACTTGCT 59.684 38.462 0.00 0.00 0.00 3.91
338 339 7.466050 GCCTACATCACTTTATTGTACTTGCTC 60.466 40.741 0.00 0.00 0.00 4.26
339 340 7.766278 CCTACATCACTTTATTGTACTTGCTCT 59.234 37.037 0.00 0.00 0.00 4.09
340 341 7.369803 ACATCACTTTATTGTACTTGCTCTG 57.630 36.000 0.00 0.00 0.00 3.35
341 342 7.161404 ACATCACTTTATTGTACTTGCTCTGA 58.839 34.615 0.00 0.00 0.00 3.27
342 343 7.661437 ACATCACTTTATTGTACTTGCTCTGAA 59.339 33.333 0.00 0.00 0.00 3.02
343 344 7.421530 TCACTTTATTGTACTTGCTCTGAAC 57.578 36.000 0.00 0.00 0.00 3.18
344 345 6.989759 TCACTTTATTGTACTTGCTCTGAACA 59.010 34.615 0.00 0.00 0.00 3.18
350 351 5.023533 TGTACTTGCTCTGAACAGAAAGT 57.976 39.130 19.07 19.07 40.03 2.66
353 354 5.283457 ACTTGCTCTGAACAGAAAGTAGT 57.717 39.130 15.71 9.76 36.98 2.73
354 355 6.406692 ACTTGCTCTGAACAGAAAGTAGTA 57.593 37.500 15.71 0.00 36.98 1.82
380 381 2.111043 CTGCAACCAGGTGTCCGT 59.889 61.111 0.00 0.00 35.38 4.69
384 385 2.029743 CAACCAGGTGTCCGTTTGG 58.970 57.895 0.00 0.00 36.76 3.28
387 388 0.107268 ACCAGGTGTCCGTTTGGTAC 59.893 55.000 0.00 0.00 41.92 3.34
388 389 0.604511 CCAGGTGTCCGTTTGGTACC 60.605 60.000 4.43 4.43 41.14 3.34
389 390 0.107081 CAGGTGTCCGTTTGGTACCA 59.893 55.000 11.60 11.60 42.37 3.25
390 391 1.061546 AGGTGTCCGTTTGGTACCAT 58.938 50.000 17.17 0.00 42.37 3.55
393 398 2.496111 GTGTCCGTTTGGTACCATGAA 58.504 47.619 17.17 4.99 36.30 2.57
396 401 4.022676 GTGTCCGTTTGGTACCATGAAAAT 60.023 41.667 17.17 0.00 36.30 1.82
441 449 0.709992 ACCACCCCAAAGGCATACAT 59.290 50.000 0.00 0.00 40.58 2.29
465 473 0.036010 CCCGTTCATCTCCTGCACTT 60.036 55.000 0.00 0.00 0.00 3.16
466 474 1.207089 CCCGTTCATCTCCTGCACTTA 59.793 52.381 0.00 0.00 0.00 2.24
471 479 4.213270 CGTTCATCTCCTGCACTTACAAAA 59.787 41.667 0.00 0.00 0.00 2.44
472 480 5.277779 CGTTCATCTCCTGCACTTACAAAAA 60.278 40.000 0.00 0.00 0.00 1.94
473 481 5.689383 TCATCTCCTGCACTTACAAAAAC 57.311 39.130 0.00 0.00 0.00 2.43
474 482 5.376625 TCATCTCCTGCACTTACAAAAACT 58.623 37.500 0.00 0.00 0.00 2.66
481 493 7.777095 TCCTGCACTTACAAAAACTACAAAAT 58.223 30.769 0.00 0.00 0.00 1.82
527 548 3.897681 TAGGCCAGCACGGTGGAGA 62.898 63.158 19.16 0.08 40.44 3.71
528 549 4.329545 GGCCAGCACGGTGGAGAA 62.330 66.667 19.16 0.00 40.44 2.87
529 550 2.281484 GCCAGCACGGTGGAGAAA 60.281 61.111 19.16 0.00 40.44 2.52
533 554 0.249868 CAGCACGGTGGAGAAACAGA 60.250 55.000 10.60 0.00 0.00 3.41
534 555 0.468226 AGCACGGTGGAGAAACAGAA 59.532 50.000 10.60 0.00 0.00 3.02
535 556 0.586802 GCACGGTGGAGAAACAGAAC 59.413 55.000 10.60 0.00 0.00 3.01
536 557 1.810412 GCACGGTGGAGAAACAGAACT 60.810 52.381 10.60 0.00 0.00 3.01
537 558 2.547218 GCACGGTGGAGAAACAGAACTA 60.547 50.000 10.60 0.00 0.00 2.24
538 559 3.864921 GCACGGTGGAGAAACAGAACTAT 60.865 47.826 10.60 0.00 0.00 2.12
539 560 3.927142 CACGGTGGAGAAACAGAACTATC 59.073 47.826 0.00 0.00 0.00 2.08
540 561 3.179830 CGGTGGAGAAACAGAACTATCG 58.820 50.000 0.00 0.00 0.00 2.92
541 562 2.930682 GGTGGAGAAACAGAACTATCGC 59.069 50.000 0.00 0.00 0.00 4.58
542 563 2.930682 GTGGAGAAACAGAACTATCGCC 59.069 50.000 0.00 0.00 33.03 5.54
543 564 2.194271 GGAGAAACAGAACTATCGCCG 58.806 52.381 0.00 0.00 0.00 6.46
544 565 1.588861 GAGAAACAGAACTATCGCCGC 59.411 52.381 0.00 0.00 0.00 6.53
629 661 1.416030 TGGTACACACAGCACAGACAT 59.584 47.619 0.00 0.00 0.00 3.06
699 738 4.778415 CGCTCCGTCCACGTCCAG 62.778 72.222 0.00 0.00 37.74 3.86
700 739 3.681835 GCTCCGTCCACGTCCAGT 61.682 66.667 0.00 0.00 37.74 4.00
910 985 3.535962 CCTCCTCGCCAGCTCCTC 61.536 72.222 0.00 0.00 0.00 3.71
939 1021 5.715439 AGAGATCTGGAGAAGAGAGAAGA 57.285 43.478 0.00 0.00 38.67 2.87
940 1022 6.078456 AGAGATCTGGAGAAGAGAGAAGAA 57.922 41.667 0.00 0.00 38.67 2.52
960 1043 0.099436 GAAGGCCATTGTTGCTAGCG 59.901 55.000 10.77 0.00 0.00 4.26
961 1044 0.322456 AAGGCCATTGTTGCTAGCGA 60.322 50.000 10.77 5.12 0.00 4.93
968 1051 1.764571 TTGTTGCTAGCGACCCACCT 61.765 55.000 28.47 0.00 0.00 4.00
973 1056 1.324005 GCTAGCGACCCACCTTCTCT 61.324 60.000 0.00 0.00 0.00 3.10
978 1061 1.941668 GCGACCCACCTTCTCTTTCTG 60.942 57.143 0.00 0.00 0.00 3.02
980 1063 1.072331 GACCCACCTTCTCTTTCTGCA 59.928 52.381 0.00 0.00 0.00 4.41
984 1067 3.560882 CCCACCTTCTCTTTCTGCATCTT 60.561 47.826 0.00 0.00 0.00 2.40
985 1068 3.688673 CCACCTTCTCTTTCTGCATCTTC 59.311 47.826 0.00 0.00 0.00 2.87
991 1086 2.422832 CTCTTTCTGCATCTTCCTTGCC 59.577 50.000 0.00 0.00 39.39 4.52
1041 1136 2.815647 CAGAAGGCGCGGTTCCTC 60.816 66.667 8.83 0.68 32.45 3.71
1123 1227 0.984961 CCTCATGGGGCTCAGGAAGA 60.985 60.000 2.30 0.00 35.62 2.87
1125 1229 0.984961 TCATGGGGCTCAGGAAGAGG 60.985 60.000 0.00 0.00 44.86 3.69
1537 1641 0.976641 CACCCAGAGCTTCCAGTACA 59.023 55.000 0.00 0.00 0.00 2.90
1562 1666 0.179129 GCAATGGCGCATTAAGCAGT 60.179 50.000 10.83 0.00 46.13 4.40
1579 1754 4.996062 GCAGTTTGCTTTGCATATTGTT 57.004 36.364 0.00 0.00 40.96 2.83
1580 1755 4.949756 GCAGTTTGCTTTGCATATTGTTC 58.050 39.130 0.00 0.00 40.96 3.18
1581 1756 4.687483 GCAGTTTGCTTTGCATATTGTTCT 59.313 37.500 0.00 0.00 40.96 3.01
1582 1757 5.389098 GCAGTTTGCTTTGCATATTGTTCTG 60.389 40.000 0.00 0.00 40.96 3.02
1583 1758 5.119588 CAGTTTGCTTTGCATATTGTTCTGG 59.880 40.000 0.00 0.00 38.76 3.86
1584 1759 4.870123 TTGCTTTGCATATTGTTCTGGT 57.130 36.364 0.00 0.00 38.76 4.00
1585 1760 5.973899 TTGCTTTGCATATTGTTCTGGTA 57.026 34.783 0.00 0.00 38.76 3.25
1586 1761 5.565592 TGCTTTGCATATTGTTCTGGTAG 57.434 39.130 0.00 0.00 31.71 3.18
1587 1762 5.009631 TGCTTTGCATATTGTTCTGGTAGT 58.990 37.500 0.00 0.00 31.71 2.73
1595 1770 1.174078 TGTTCTGGTAGTGTCCGCGA 61.174 55.000 8.23 0.00 0.00 5.87
1602 1777 0.454600 GTAGTGTCCGCGAGATCCAA 59.545 55.000 8.23 0.00 0.00 3.53
1613 1788 3.846896 CGCGAGATCCAAATAGATACGAC 59.153 47.826 0.00 0.00 31.94 4.34
1614 1789 3.846896 GCGAGATCCAAATAGATACGACG 59.153 47.826 0.00 0.00 31.94 5.12
1615 1790 4.378149 GCGAGATCCAAATAGATACGACGA 60.378 45.833 0.00 0.00 31.94 4.20
1616 1791 5.080731 CGAGATCCAAATAGATACGACGAC 58.919 45.833 0.00 0.00 31.94 4.34
1617 1792 5.032100 AGATCCAAATAGATACGACGACG 57.968 43.478 5.58 5.58 45.75 5.12
1618 1793 3.614159 TCCAAATAGATACGACGACGG 57.386 47.619 12.58 0.00 44.46 4.79
1619 1794 2.291465 TCCAAATAGATACGACGACGGG 59.709 50.000 12.58 0.00 44.46 5.28
1620 1795 2.291465 CCAAATAGATACGACGACGGGA 59.709 50.000 12.58 0.00 44.46 5.14
1621 1796 3.243168 CCAAATAGATACGACGACGGGAA 60.243 47.826 12.58 0.00 44.46 3.97
1622 1797 3.892918 AATAGATACGACGACGGGAAG 57.107 47.619 12.58 0.00 44.46 3.46
1623 1798 1.586422 TAGATACGACGACGGGAAGG 58.414 55.000 12.58 0.00 44.46 3.46
1624 1799 0.107508 AGATACGACGACGGGAAGGA 60.108 55.000 12.58 0.00 44.46 3.36
1625 1800 0.307146 GATACGACGACGGGAAGGAG 59.693 60.000 12.58 0.00 44.46 3.69
1671 1850 2.443958 TCTCAGGTGAGATCGATGGT 57.556 50.000 0.54 0.00 45.48 3.55
1795 3862 2.802787 AGATACCGAGTGTATGCTGC 57.197 50.000 0.00 0.00 40.31 5.25
1905 3977 0.460284 ATGCAGATTCGTGGTCGACC 60.460 55.000 28.17 28.17 46.03 4.79
2035 4118 2.038295 GCTGGTGGAGCTAGCTAATGAT 59.962 50.000 19.38 0.00 46.57 2.45
2052 4135 7.442062 AGCTAATGATGGTTTTGTTTTCCTTTG 59.558 33.333 0.00 0.00 0.00 2.77
2059 4142 5.047847 GGTTTTGTTTTCCTTTGGTAGAGC 58.952 41.667 0.00 0.00 0.00 4.09
2062 4145 3.751518 TGTTTTCCTTTGGTAGAGCCTC 58.248 45.455 0.00 0.00 38.35 4.70
2162 4245 9.467258 AATAAAATAATGATGAACATGCTTCGG 57.533 29.630 0.00 0.00 39.39 4.30
2164 4247 6.455360 AATAATGATGAACATGCTTCGGTT 57.545 33.333 0.00 0.00 39.39 4.44
2276 4377 4.585162 TGGAGAAGAAGAAGACGAAGAAGT 59.415 41.667 0.00 0.00 0.00 3.01
2370 4476 3.001939 GTCTTTTCGAAAAAGGCTCGTCA 59.998 43.478 22.67 0.00 37.56 4.35
2373 4479 0.942410 TCGAAAAAGGCTCGTCACCG 60.942 55.000 0.00 0.00 37.56 4.94
2442 4550 6.099341 AGATTTCTCAAGCGTTTTGTGTTTT 58.901 32.000 2.52 0.00 0.00 2.43
2454 4562 0.818296 TGTGTTTTGGGTGTTTCGGG 59.182 50.000 0.00 0.00 0.00 5.14
2478 4589 6.348050 GGAAAGTGACATTAGAGCAGAAAGTG 60.348 42.308 0.00 0.00 0.00 3.16
2479 4590 5.220710 AGTGACATTAGAGCAGAAAGTGT 57.779 39.130 0.00 0.00 0.00 3.55
2480 4591 5.615289 AGTGACATTAGAGCAGAAAGTGTT 58.385 37.500 0.00 0.00 0.00 3.32
2481 4592 6.759272 AGTGACATTAGAGCAGAAAGTGTTA 58.241 36.000 0.00 0.00 0.00 2.41
2482 4593 6.647067 AGTGACATTAGAGCAGAAAGTGTTAC 59.353 38.462 0.00 0.00 0.00 2.50
2484 4595 7.118390 GTGACATTAGAGCAGAAAGTGTTACAT 59.882 37.037 0.00 0.00 0.00 2.29
2486 4597 6.936900 ACATTAGAGCAGAAAGTGTTACATGT 59.063 34.615 2.69 2.69 0.00 3.21
2487 4598 8.094548 ACATTAGAGCAGAAAGTGTTACATGTA 58.905 33.333 0.08 0.08 0.00 2.29
2555 4673 4.210331 AGGTCCAAATCTGTGGCATAATC 58.790 43.478 0.00 0.00 38.68 1.75
2556 4674 3.953612 GGTCCAAATCTGTGGCATAATCA 59.046 43.478 0.00 0.00 38.68 2.57
2557 4675 4.402155 GGTCCAAATCTGTGGCATAATCAA 59.598 41.667 0.00 0.00 38.68 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.135575 GCTTCGCTGGAACCTTTGATG 60.136 52.381 0.00 0.00 0.00 3.07
5 6 1.339151 CCTAGCTTCGCTGGAACCTTT 60.339 52.381 0.00 0.00 39.54 3.11
6 7 0.250513 CCTAGCTTCGCTGGAACCTT 59.749 55.000 0.00 0.00 39.54 3.50
7 8 0.614979 TCCTAGCTTCGCTGGAACCT 60.615 55.000 0.00 0.00 39.54 3.50
8 9 0.179097 CTCCTAGCTTCGCTGGAACC 60.179 60.000 0.00 0.00 39.54 3.62
9 10 0.533032 ACTCCTAGCTTCGCTGGAAC 59.467 55.000 0.00 0.00 39.54 3.62
10 11 2.025155 CTACTCCTAGCTTCGCTGGAA 58.975 52.381 0.00 0.00 39.54 3.53
11 12 1.681538 CTACTCCTAGCTTCGCTGGA 58.318 55.000 0.00 4.29 39.54 3.86
12 13 0.671251 CCTACTCCTAGCTTCGCTGG 59.329 60.000 0.00 0.00 40.10 4.85
13 14 1.066303 CACCTACTCCTAGCTTCGCTG 59.934 57.143 0.00 0.00 40.10 5.18
14 15 1.394618 CACCTACTCCTAGCTTCGCT 58.605 55.000 0.00 0.00 43.41 4.93
15 16 0.249114 GCACCTACTCCTAGCTTCGC 60.249 60.000 0.00 0.00 0.00 4.70
16 17 0.029567 CGCACCTACTCCTAGCTTCG 59.970 60.000 0.00 0.00 0.00 3.79
17 18 1.390565 TCGCACCTACTCCTAGCTTC 58.609 55.000 0.00 0.00 0.00 3.86
18 19 1.751924 CTTCGCACCTACTCCTAGCTT 59.248 52.381 0.00 0.00 0.00 3.74
19 20 1.394618 CTTCGCACCTACTCCTAGCT 58.605 55.000 0.00 0.00 0.00 3.32
20 21 0.386113 CCTTCGCACCTACTCCTAGC 59.614 60.000 0.00 0.00 0.00 3.42
21 22 1.033574 CCCTTCGCACCTACTCCTAG 58.966 60.000 0.00 0.00 0.00 3.02
22 23 0.396695 CCCCTTCGCACCTACTCCTA 60.397 60.000 0.00 0.00 0.00 2.94
23 24 1.686110 CCCCTTCGCACCTACTCCT 60.686 63.158 0.00 0.00 0.00 3.69
24 25 2.732619 CCCCCTTCGCACCTACTCC 61.733 68.421 0.00 0.00 0.00 3.85
25 26 2.901042 CCCCCTTCGCACCTACTC 59.099 66.667 0.00 0.00 0.00 2.59
26 27 3.400054 GCCCCCTTCGCACCTACT 61.400 66.667 0.00 0.00 0.00 2.57
27 28 4.484872 GGCCCCCTTCGCACCTAC 62.485 72.222 0.00 0.00 0.00 3.18
35 36 1.687297 CTAAGAGGACGGCCCCCTTC 61.687 65.000 15.08 0.57 33.36 3.46
36 37 1.689582 CTAAGAGGACGGCCCCCTT 60.690 63.158 15.82 15.82 33.36 3.95
37 38 2.041819 CTAAGAGGACGGCCCCCT 60.042 66.667 1.76 10.91 36.57 4.79
38 39 2.042230 TCTAAGAGGACGGCCCCC 60.042 66.667 1.76 0.00 34.66 5.40
39 40 2.798364 GCTCTAAGAGGACGGCCCC 61.798 68.421 1.76 0.00 34.66 5.80
40 41 1.403687 ATGCTCTAAGAGGACGGCCC 61.404 60.000 1.76 0.00 31.84 5.80
41 42 0.249657 CATGCTCTAAGAGGACGGCC 60.250 60.000 0.00 0.00 31.84 6.13
42 43 0.249657 CCATGCTCTAAGAGGACGGC 60.250 60.000 0.00 0.00 31.84 5.68
43 44 1.115467 ACCATGCTCTAAGAGGACGG 58.885 55.000 0.00 0.00 39.20 4.79
44 45 2.969628 AACCATGCTCTAAGAGGACG 57.030 50.000 0.00 0.00 31.84 4.79
50 51 9.890629 TGGCTATATTATTAACCATGCTCTAAG 57.109 33.333 0.00 0.00 0.00 2.18
51 52 9.890629 CTGGCTATATTATTAACCATGCTCTAA 57.109 33.333 0.00 0.00 0.00 2.10
52 53 7.987458 GCTGGCTATATTATTAACCATGCTCTA 59.013 37.037 0.00 0.00 0.00 2.43
53 54 6.825721 GCTGGCTATATTATTAACCATGCTCT 59.174 38.462 0.00 0.00 0.00 4.09
54 55 6.825721 AGCTGGCTATATTATTAACCATGCTC 59.174 38.462 0.00 0.00 30.87 4.26
55 56 6.600822 CAGCTGGCTATATTATTAACCATGCT 59.399 38.462 5.57 0.00 34.32 3.79
56 57 6.678900 GCAGCTGGCTATATTATTAACCATGC 60.679 42.308 17.12 0.00 40.25 4.06
57 58 6.789262 GCAGCTGGCTATATTATTAACCATG 58.211 40.000 17.12 0.00 40.25 3.66
77 78 2.095364 GCAACATCATATAGCCAGCAGC 60.095 50.000 0.00 0.00 44.25 5.25
78 79 2.486982 GGCAACATCATATAGCCAGCAG 59.513 50.000 0.00 0.00 44.59 4.24
79 80 2.507484 GGCAACATCATATAGCCAGCA 58.493 47.619 0.00 0.00 44.59 4.41
94 95 6.260936 AGCTTAACTATATGTGACATGGCAAC 59.739 38.462 0.58 0.00 0.00 4.17
95 96 6.356556 AGCTTAACTATATGTGACATGGCAA 58.643 36.000 0.58 0.00 0.00 4.52
96 97 5.928976 AGCTTAACTATATGTGACATGGCA 58.071 37.500 8.61 0.00 0.00 4.92
97 98 6.867662 AAGCTTAACTATATGTGACATGGC 57.132 37.500 8.61 0.00 0.00 4.40
100 101 9.877178 GGCTATAAGCTTAACTATATGTGACAT 57.123 33.333 10.85 2.65 41.99 3.06
101 102 8.866093 TGGCTATAAGCTTAACTATATGTGACA 58.134 33.333 10.85 0.00 41.99 3.58
102 103 9.706691 TTGGCTATAAGCTTAACTATATGTGAC 57.293 33.333 10.85 0.00 41.99 3.67
103 104 9.706691 GTTGGCTATAAGCTTAACTATATGTGA 57.293 33.333 10.85 0.00 41.99 3.58
104 105 9.489084 TGTTGGCTATAAGCTTAACTATATGTG 57.511 33.333 10.85 0.00 41.99 3.21
109 110 9.543783 GTACTTGTTGGCTATAAGCTTAACTAT 57.456 33.333 10.85 0.00 41.99 2.12
110 111 8.533657 TGTACTTGTTGGCTATAAGCTTAACTA 58.466 33.333 10.85 1.16 41.99 2.24
111 112 7.391620 TGTACTTGTTGGCTATAAGCTTAACT 58.608 34.615 10.85 0.00 41.99 2.24
112 113 7.605410 TGTACTTGTTGGCTATAAGCTTAAC 57.395 36.000 10.85 5.43 41.99 2.01
113 114 8.801882 ATTGTACTTGTTGGCTATAAGCTTAA 57.198 30.769 10.85 0.00 41.99 1.85
114 115 9.542462 CTATTGTACTTGTTGGCTATAAGCTTA 57.458 33.333 8.99 8.99 41.99 3.09
115 116 7.012421 GCTATTGTACTTGTTGGCTATAAGCTT 59.988 37.037 3.48 3.48 41.99 3.74
116 117 6.483640 GCTATTGTACTTGTTGGCTATAAGCT 59.516 38.462 5.44 0.00 41.99 3.74
117 118 6.483640 AGCTATTGTACTTGTTGGCTATAAGC 59.516 38.462 5.44 0.00 41.46 3.09
118 119 7.041780 CCAGCTATTGTACTTGTTGGCTATAAG 60.042 40.741 4.09 4.09 0.00 1.73
119 120 6.765989 CCAGCTATTGTACTTGTTGGCTATAA 59.234 38.462 0.00 0.00 0.00 0.98
120 121 6.099125 TCCAGCTATTGTACTTGTTGGCTATA 59.901 38.462 0.00 0.00 32.10 1.31
121 122 5.104527 TCCAGCTATTGTACTTGTTGGCTAT 60.105 40.000 0.00 0.00 32.10 2.97
122 123 4.224147 TCCAGCTATTGTACTTGTTGGCTA 59.776 41.667 0.00 0.00 32.10 3.93
123 124 3.009033 TCCAGCTATTGTACTTGTTGGCT 59.991 43.478 0.00 0.00 32.10 4.75
124 125 3.343617 TCCAGCTATTGTACTTGTTGGC 58.656 45.455 0.00 0.00 32.10 4.52
125 126 8.902540 TTATATCCAGCTATTGTACTTGTTGG 57.097 34.615 0.00 0.04 33.09 3.77
152 153 9.062524 GGCCATGTATCAACAAAATAGTACATA 57.937 33.333 0.00 0.00 39.58 2.29
153 154 7.014230 GGGCCATGTATCAACAAAATAGTACAT 59.986 37.037 4.39 0.00 39.58 2.29
154 155 6.320164 GGGCCATGTATCAACAAAATAGTACA 59.680 38.462 4.39 0.00 39.58 2.90
155 156 6.320164 TGGGCCATGTATCAACAAAATAGTAC 59.680 38.462 0.00 0.00 39.58 2.73
156 157 6.320164 GTGGGCCATGTATCAACAAAATAGTA 59.680 38.462 10.70 0.00 39.58 1.82
157 158 5.127031 GTGGGCCATGTATCAACAAAATAGT 59.873 40.000 10.70 0.00 39.58 2.12
158 159 5.451798 GGTGGGCCATGTATCAACAAAATAG 60.452 44.000 10.70 0.00 39.58 1.73
159 160 4.404073 GGTGGGCCATGTATCAACAAAATA 59.596 41.667 10.70 0.00 39.58 1.40
160 161 3.197549 GGTGGGCCATGTATCAACAAAAT 59.802 43.478 10.70 0.00 39.58 1.82
161 162 2.564947 GGTGGGCCATGTATCAACAAAA 59.435 45.455 10.70 0.00 39.58 2.44
162 163 2.175202 GGTGGGCCATGTATCAACAAA 58.825 47.619 10.70 0.00 39.58 2.83
163 164 1.618345 GGGTGGGCCATGTATCAACAA 60.618 52.381 10.70 0.00 39.58 2.83
164 165 0.033601 GGGTGGGCCATGTATCAACA 60.034 55.000 10.70 0.00 40.69 3.33
165 166 0.755327 GGGGTGGGCCATGTATCAAC 60.755 60.000 10.70 0.00 36.17 3.18
166 167 1.217747 TGGGGTGGGCCATGTATCAA 61.218 55.000 10.70 0.00 36.17 2.57
167 168 1.620897 TGGGGTGGGCCATGTATCA 60.621 57.895 10.70 1.45 36.17 2.15
168 169 1.152756 GTGGGGTGGGCCATGTATC 60.153 63.158 10.70 0.00 36.17 2.24
169 170 1.622442 AGTGGGGTGGGCCATGTAT 60.622 57.895 10.70 0.00 36.17 2.29
170 171 2.204228 AGTGGGGTGGGCCATGTA 60.204 61.111 10.70 0.00 36.17 2.29
171 172 3.661648 GAGTGGGGTGGGCCATGT 61.662 66.667 10.70 0.00 36.17 3.21
172 173 3.341629 AGAGTGGGGTGGGCCATG 61.342 66.667 10.70 0.00 36.17 3.66
173 174 3.017581 GAGAGTGGGGTGGGCCAT 61.018 66.667 10.70 0.00 36.17 4.40
174 175 4.270153 AGAGAGTGGGGTGGGCCA 62.270 66.667 0.00 0.00 36.17 5.36
175 176 3.403558 GAGAGAGTGGGGTGGGCC 61.404 72.222 0.00 0.00 0.00 5.80
176 177 2.607750 TGAGAGAGTGGGGTGGGC 60.608 66.667 0.00 0.00 0.00 5.36
177 178 1.127567 TTGTGAGAGAGTGGGGTGGG 61.128 60.000 0.00 0.00 0.00 4.61
178 179 0.764890 TTTGTGAGAGAGTGGGGTGG 59.235 55.000 0.00 0.00 0.00 4.61
179 180 1.417890 ACTTTGTGAGAGAGTGGGGTG 59.582 52.381 0.00 0.00 0.00 4.61
180 181 1.807814 ACTTTGTGAGAGAGTGGGGT 58.192 50.000 0.00 0.00 0.00 4.95
181 182 2.028020 GGTACTTTGTGAGAGAGTGGGG 60.028 54.545 0.00 0.00 0.00 4.96
182 183 2.900546 AGGTACTTTGTGAGAGAGTGGG 59.099 50.000 0.00 0.00 27.25 4.61
183 184 4.158764 CCTAGGTACTTTGTGAGAGAGTGG 59.841 50.000 0.00 0.00 41.75 4.00
184 185 5.010933 TCCTAGGTACTTTGTGAGAGAGTG 58.989 45.833 9.08 0.00 41.75 3.51
185 186 5.258051 CTCCTAGGTACTTTGTGAGAGAGT 58.742 45.833 9.08 0.00 41.75 3.24
186 187 4.097286 GCTCCTAGGTACTTTGTGAGAGAG 59.903 50.000 9.08 0.00 41.75 3.20
187 188 4.017808 GCTCCTAGGTACTTTGTGAGAGA 58.982 47.826 9.08 0.00 41.75 3.10
188 189 3.764434 TGCTCCTAGGTACTTTGTGAGAG 59.236 47.826 9.08 0.00 41.75 3.20
189 190 3.510360 GTGCTCCTAGGTACTTTGTGAGA 59.490 47.826 9.08 0.00 41.75 3.27
190 191 3.673594 CGTGCTCCTAGGTACTTTGTGAG 60.674 52.174 9.08 0.00 41.75 3.51
191 192 2.230508 CGTGCTCCTAGGTACTTTGTGA 59.769 50.000 9.08 0.00 41.75 3.58
192 193 2.029290 ACGTGCTCCTAGGTACTTTGTG 60.029 50.000 9.08 0.00 41.75 3.33
193 194 2.029290 CACGTGCTCCTAGGTACTTTGT 60.029 50.000 9.08 0.00 41.75 2.83
194 195 2.029290 ACACGTGCTCCTAGGTACTTTG 60.029 50.000 17.22 8.91 41.75 2.77
195 196 2.245582 ACACGTGCTCCTAGGTACTTT 58.754 47.619 17.22 0.00 41.75 2.66
196 197 1.920610 ACACGTGCTCCTAGGTACTT 58.079 50.000 17.22 0.00 41.75 2.24
197 198 1.544691 CAACACGTGCTCCTAGGTACT 59.455 52.381 17.22 0.00 46.37 2.73
198 199 1.271656 ACAACACGTGCTCCTAGGTAC 59.728 52.381 17.22 6.12 0.00 3.34
199 200 1.624336 ACAACACGTGCTCCTAGGTA 58.376 50.000 17.22 0.00 0.00 3.08
200 201 1.544691 CTACAACACGTGCTCCTAGGT 59.455 52.381 17.22 6.04 0.00 3.08
201 202 1.736032 GCTACAACACGTGCTCCTAGG 60.736 57.143 17.22 0.82 0.00 3.02
202 203 1.630148 GCTACAACACGTGCTCCTAG 58.370 55.000 17.22 10.23 0.00 3.02
203 204 0.245539 GGCTACAACACGTGCTCCTA 59.754 55.000 17.22 0.00 0.00 2.94
204 205 1.004918 GGCTACAACACGTGCTCCT 60.005 57.895 17.22 0.00 0.00 3.69
205 206 2.380410 CGGCTACAACACGTGCTCC 61.380 63.158 17.22 6.85 0.00 4.70
206 207 2.380410 CCGGCTACAACACGTGCTC 61.380 63.158 17.22 0.00 0.00 4.26
207 208 2.357034 CCGGCTACAACACGTGCT 60.357 61.111 17.22 0.00 0.00 4.40
208 209 4.084888 GCCGGCTACAACACGTGC 62.085 66.667 22.15 0.00 0.00 5.34
209 210 2.357034 AGCCGGCTACAACACGTG 60.357 61.111 31.86 15.48 0.00 4.49
210 211 2.357034 CAGCCGGCTACAACACGT 60.357 61.111 32.30 0.00 0.00 4.49
211 212 0.668096 TAACAGCCGGCTACAACACG 60.668 55.000 32.30 17.86 0.00 4.49
212 213 1.196127 GTTAACAGCCGGCTACAACAC 59.804 52.381 32.30 18.19 0.00 3.32
213 214 1.071071 AGTTAACAGCCGGCTACAACA 59.929 47.619 31.95 16.53 0.00 3.33
214 215 1.804601 AGTTAACAGCCGGCTACAAC 58.195 50.000 32.30 29.05 0.00 3.32
215 216 2.564062 ACTAGTTAACAGCCGGCTACAA 59.436 45.455 32.30 20.00 0.00 2.41
216 217 2.173519 ACTAGTTAACAGCCGGCTACA 58.826 47.619 32.30 14.62 0.00 2.74
217 218 2.955477 ACTAGTTAACAGCCGGCTAC 57.045 50.000 32.30 23.99 0.00 3.58
218 219 2.360165 GCTACTAGTTAACAGCCGGCTA 59.640 50.000 32.30 11.93 0.00 3.93
219 220 1.136500 GCTACTAGTTAACAGCCGGCT 59.864 52.381 27.08 27.08 0.00 5.52
220 221 1.568606 GCTACTAGTTAACAGCCGGC 58.431 55.000 21.89 21.89 0.00 6.13
221 222 2.220479 GGCTACTAGTTAACAGCCGG 57.780 55.000 16.68 0.00 43.80 6.13
224 225 1.136500 AGCGGGCTACTAGTTAACAGC 59.864 52.381 8.61 3.42 0.00 4.40
225 226 3.521947 AAGCGGGCTACTAGTTAACAG 57.478 47.619 8.61 6.00 0.00 3.16
226 227 3.967332 AAAGCGGGCTACTAGTTAACA 57.033 42.857 8.61 0.00 0.00 2.41
227 228 4.502016 AGAAAAGCGGGCTACTAGTTAAC 58.498 43.478 0.00 0.00 0.00 2.01
228 229 4.813750 AGAAAAGCGGGCTACTAGTTAA 57.186 40.909 0.00 0.00 0.00 2.01
229 230 4.465305 AGAAGAAAAGCGGGCTACTAGTTA 59.535 41.667 0.00 0.00 0.00 2.24
230 231 3.261137 AGAAGAAAAGCGGGCTACTAGTT 59.739 43.478 0.00 0.00 0.00 2.24
231 232 2.832733 AGAAGAAAAGCGGGCTACTAGT 59.167 45.455 0.00 0.00 0.00 2.57
232 233 3.131400 AGAGAAGAAAAGCGGGCTACTAG 59.869 47.826 0.00 0.00 0.00 2.57
233 234 3.097614 AGAGAAGAAAAGCGGGCTACTA 58.902 45.455 0.00 0.00 0.00 1.82
234 235 1.903183 AGAGAAGAAAAGCGGGCTACT 59.097 47.619 0.00 0.00 0.00 2.57
235 236 2.093921 AGAGAGAAGAAAAGCGGGCTAC 60.094 50.000 0.00 0.00 0.00 3.58
236 237 2.166664 GAGAGAGAAGAAAAGCGGGCTA 59.833 50.000 0.00 0.00 0.00 3.93
237 238 0.980423 AGAGAGAAGAAAAGCGGGCT 59.020 50.000 0.00 0.00 0.00 5.19
238 239 1.364721 GAGAGAGAAGAAAAGCGGGC 58.635 55.000 0.00 0.00 0.00 6.13
239 240 1.552792 AGGAGAGAGAAGAAAAGCGGG 59.447 52.381 0.00 0.00 0.00 6.13
240 241 4.664150 ATAGGAGAGAGAAGAAAAGCGG 57.336 45.455 0.00 0.00 0.00 5.52
241 242 5.901552 AGAATAGGAGAGAGAAGAAAAGCG 58.098 41.667 0.00 0.00 0.00 4.68
242 243 7.068716 AGAGAGAATAGGAGAGAGAAGAAAAGC 59.931 40.741 0.00 0.00 0.00 3.51
243 244 8.525290 AGAGAGAATAGGAGAGAGAAGAAAAG 57.475 38.462 0.00 0.00 0.00 2.27
244 245 8.336235 AGAGAGAGAATAGGAGAGAGAAGAAAA 58.664 37.037 0.00 0.00 0.00 2.29
245 246 7.872138 AGAGAGAGAATAGGAGAGAGAAGAAA 58.128 38.462 0.00 0.00 0.00 2.52
246 247 7.451731 AGAGAGAGAATAGGAGAGAGAAGAA 57.548 40.000 0.00 0.00 0.00 2.52
247 248 7.420214 GGAAGAGAGAGAATAGGAGAGAGAAGA 60.420 44.444 0.00 0.00 0.00 2.87
248 249 6.712547 GGAAGAGAGAGAATAGGAGAGAGAAG 59.287 46.154 0.00 0.00 0.00 2.85
249 250 6.159575 TGGAAGAGAGAGAATAGGAGAGAGAA 59.840 42.308 0.00 0.00 0.00 2.87
250 251 5.669904 TGGAAGAGAGAGAATAGGAGAGAGA 59.330 44.000 0.00 0.00 0.00 3.10
251 252 5.940617 TGGAAGAGAGAGAATAGGAGAGAG 58.059 45.833 0.00 0.00 0.00 3.20
252 253 5.985175 TGGAAGAGAGAGAATAGGAGAGA 57.015 43.478 0.00 0.00 0.00 3.10
253 254 7.601705 ATTTGGAAGAGAGAGAATAGGAGAG 57.398 40.000 0.00 0.00 0.00 3.20
254 255 9.142014 CTTATTTGGAAGAGAGAGAATAGGAGA 57.858 37.037 0.00 0.00 0.00 3.71
255 256 7.872483 GCTTATTTGGAAGAGAGAGAATAGGAG 59.128 40.741 0.00 0.00 0.00 3.69
256 257 7.345653 TGCTTATTTGGAAGAGAGAGAATAGGA 59.654 37.037 0.00 0.00 0.00 2.94
257 258 7.504403 TGCTTATTTGGAAGAGAGAGAATAGG 58.496 38.462 0.00 0.00 0.00 2.57
258 259 8.954950 TTGCTTATTTGGAAGAGAGAGAATAG 57.045 34.615 0.00 0.00 0.00 1.73
259 260 8.762645 TCTTGCTTATTTGGAAGAGAGAGAATA 58.237 33.333 0.00 0.00 39.01 1.75
260 261 7.628234 TCTTGCTTATTTGGAAGAGAGAGAAT 58.372 34.615 0.00 0.00 39.01 2.40
261 262 7.009179 TCTTGCTTATTTGGAAGAGAGAGAA 57.991 36.000 0.00 0.00 39.01 2.87
262 263 6.611613 TCTTGCTTATTTGGAAGAGAGAGA 57.388 37.500 0.00 0.00 39.01 3.10
263 264 7.862512 ATTCTTGCTTATTTGGAAGAGAGAG 57.137 36.000 0.00 0.00 43.34 3.20
300 301 0.464452 ATGTAGGCGGGCTGTAAGAC 59.536 55.000 15.11 4.36 46.31 3.01
301 302 0.750850 GATGTAGGCGGGCTGTAAGA 59.249 55.000 15.11 0.00 34.07 2.10
302 303 0.464036 TGATGTAGGCGGGCTGTAAG 59.536 55.000 15.11 0.00 0.00 2.34
303 304 0.177141 GTGATGTAGGCGGGCTGTAA 59.823 55.000 15.11 0.00 0.00 2.41
304 305 0.686441 AGTGATGTAGGCGGGCTGTA 60.686 55.000 15.11 3.12 0.00 2.74
305 306 1.553690 AAGTGATGTAGGCGGGCTGT 61.554 55.000 15.11 0.00 0.00 4.40
306 307 0.392998 AAAGTGATGTAGGCGGGCTG 60.393 55.000 15.11 0.00 0.00 4.85
307 308 1.200519 TAAAGTGATGTAGGCGGGCT 58.799 50.000 9.68 9.68 0.00 5.19
308 309 2.256117 ATAAAGTGATGTAGGCGGGC 57.744 50.000 0.00 0.00 0.00 6.13
309 310 3.541632 ACAATAAAGTGATGTAGGCGGG 58.458 45.455 0.00 0.00 0.00 6.13
310 311 5.357257 AGTACAATAAAGTGATGTAGGCGG 58.643 41.667 0.00 0.00 30.70 6.13
311 312 6.705782 CAAGTACAATAAAGTGATGTAGGCG 58.294 40.000 0.00 0.00 30.70 5.52
312 313 6.316390 AGCAAGTACAATAAAGTGATGTAGGC 59.684 38.462 0.00 0.00 30.70 3.93
313 314 7.766278 AGAGCAAGTACAATAAAGTGATGTAGG 59.234 37.037 0.00 0.00 30.70 3.18
314 315 8.598924 CAGAGCAAGTACAATAAAGTGATGTAG 58.401 37.037 0.00 0.00 30.70 2.74
315 316 8.311109 TCAGAGCAAGTACAATAAAGTGATGTA 58.689 33.333 0.00 0.00 0.00 2.29
316 317 7.161404 TCAGAGCAAGTACAATAAAGTGATGT 58.839 34.615 0.00 0.00 0.00 3.06
317 318 7.601073 TCAGAGCAAGTACAATAAAGTGATG 57.399 36.000 0.00 0.00 0.00 3.07
318 319 7.661437 TGTTCAGAGCAAGTACAATAAAGTGAT 59.339 33.333 0.00 0.00 0.00 3.06
319 320 6.989759 TGTTCAGAGCAAGTACAATAAAGTGA 59.010 34.615 0.00 0.00 0.00 3.41
320 321 7.171508 TCTGTTCAGAGCAAGTACAATAAAGTG 59.828 37.037 0.00 0.00 0.00 3.16
321 322 7.217200 TCTGTTCAGAGCAAGTACAATAAAGT 58.783 34.615 0.00 0.00 0.00 2.66
322 323 7.658179 TCTGTTCAGAGCAAGTACAATAAAG 57.342 36.000 0.00 0.00 0.00 1.85
323 324 8.445275 TTTCTGTTCAGAGCAAGTACAATAAA 57.555 30.769 0.00 0.00 0.00 1.40
324 325 7.715249 ACTTTCTGTTCAGAGCAAGTACAATAA 59.285 33.333 14.42 0.00 0.00 1.40
325 326 7.217200 ACTTTCTGTTCAGAGCAAGTACAATA 58.783 34.615 14.42 0.00 0.00 1.90
326 327 6.058183 ACTTTCTGTTCAGAGCAAGTACAAT 58.942 36.000 14.42 0.00 0.00 2.71
327 328 5.428253 ACTTTCTGTTCAGAGCAAGTACAA 58.572 37.500 14.42 0.69 0.00 2.41
328 329 5.023533 ACTTTCTGTTCAGAGCAAGTACA 57.976 39.130 14.42 0.00 0.00 2.90
329 330 6.217294 ACTACTTTCTGTTCAGAGCAAGTAC 58.783 40.000 16.54 0.00 0.00 2.73
330 331 6.406692 ACTACTTTCTGTTCAGAGCAAGTA 57.593 37.500 18.14 18.14 0.00 2.24
331 332 5.283457 ACTACTTTCTGTTCAGAGCAAGT 57.717 39.130 17.93 17.93 0.00 3.16
332 333 6.216569 TGTACTACTTTCTGTTCAGAGCAAG 58.783 40.000 10.75 10.75 0.00 4.01
333 334 6.156748 TGTACTACTTTCTGTTCAGAGCAA 57.843 37.500 2.77 0.00 0.00 3.91
334 335 5.302059 ACTGTACTACTTTCTGTTCAGAGCA 59.698 40.000 2.77 0.00 0.00 4.26
335 336 5.631512 CACTGTACTACTTTCTGTTCAGAGC 59.368 44.000 2.77 0.00 0.00 4.09
336 337 5.631512 GCACTGTACTACTTTCTGTTCAGAG 59.368 44.000 2.77 0.00 0.00 3.35
337 338 5.068591 TGCACTGTACTACTTTCTGTTCAGA 59.931 40.000 0.00 0.00 0.00 3.27
338 339 5.289595 TGCACTGTACTACTTTCTGTTCAG 58.710 41.667 0.00 0.00 0.00 3.02
339 340 5.270893 TGCACTGTACTACTTTCTGTTCA 57.729 39.130 0.00 0.00 0.00 3.18
340 341 5.753921 AGTTGCACTGTACTACTTTCTGTTC 59.246 40.000 0.00 0.00 0.00 3.18
341 342 5.523916 CAGTTGCACTGTACTACTTTCTGTT 59.476 40.000 7.80 0.00 41.19 3.16
342 343 5.050490 CAGTTGCACTGTACTACTTTCTGT 58.950 41.667 7.80 0.00 41.19 3.41
343 344 5.582439 CAGTTGCACTGTACTACTTTCTG 57.418 43.478 7.80 0.00 41.19 3.02
380 381 7.273320 TCGTTGTTATTTTCATGGTACCAAA 57.727 32.000 20.76 9.11 0.00 3.28
387 388 9.579768 TGGAAATTATCGTTGTTATTTTCATGG 57.420 29.630 0.00 0.00 0.00 3.66
389 390 9.301153 GCTGGAAATTATCGTTGTTATTTTCAT 57.699 29.630 0.00 0.00 28.16 2.57
390 391 7.757624 GGCTGGAAATTATCGTTGTTATTTTCA 59.242 33.333 0.00 0.00 0.00 2.69
393 398 7.164230 TGGCTGGAAATTATCGTTGTTATTT 57.836 32.000 0.00 0.00 0.00 1.40
396 401 6.767524 AATGGCTGGAAATTATCGTTGTTA 57.232 33.333 0.00 0.00 0.00 2.41
414 422 1.277842 CCTTTGGGGTGGTAAAATGGC 59.722 52.381 0.00 0.00 0.00 4.40
441 449 1.100510 CAGGAGATGAACGGGTCGTA 58.899 55.000 0.00 0.00 39.99 3.43
465 473 7.584847 CGCGAGAAAGATTTTGTAGTTTTTGTA 59.415 33.333 0.00 0.00 0.00 2.41
466 474 6.413818 CGCGAGAAAGATTTTGTAGTTTTTGT 59.586 34.615 0.00 0.00 0.00 2.83
471 479 5.333875 GGAACGCGAGAAAGATTTTGTAGTT 60.334 40.000 15.93 0.00 0.00 2.24
472 480 4.151867 GGAACGCGAGAAAGATTTTGTAGT 59.848 41.667 15.93 0.00 0.00 2.73
473 481 4.151689 TGGAACGCGAGAAAGATTTTGTAG 59.848 41.667 15.93 0.00 0.00 2.74
474 482 4.059511 TGGAACGCGAGAAAGATTTTGTA 58.940 39.130 15.93 0.00 0.00 2.41
527 548 1.463444 GTTGCGGCGATAGTTCTGTTT 59.537 47.619 12.98 0.00 39.35 2.83
528 549 1.076332 GTTGCGGCGATAGTTCTGTT 58.924 50.000 12.98 0.00 39.35 3.16
529 550 0.037697 TGTTGCGGCGATAGTTCTGT 60.038 50.000 12.98 0.00 39.35 3.41
533 554 1.463444 GACTTTGTTGCGGCGATAGTT 59.537 47.619 12.98 0.00 39.35 2.24
534 555 1.076332 GACTTTGTTGCGGCGATAGT 58.924 50.000 12.98 0.00 39.35 2.12
535 556 1.061131 CTGACTTTGTTGCGGCGATAG 59.939 52.381 12.98 0.00 0.00 2.08
536 557 1.075542 CTGACTTTGTTGCGGCGATA 58.924 50.000 12.98 0.00 0.00 2.92
537 558 0.602638 TCTGACTTTGTTGCGGCGAT 60.603 50.000 12.98 0.00 0.00 4.58
538 559 1.227409 TCTGACTTTGTTGCGGCGA 60.227 52.632 12.98 0.00 0.00 5.54
539 560 1.082756 GTCTGACTTTGTTGCGGCG 60.083 57.895 0.51 0.51 0.00 6.46
540 561 0.040958 CTGTCTGACTTTGTTGCGGC 60.041 55.000 9.51 0.00 0.00 6.53
541 562 0.040958 GCTGTCTGACTTTGTTGCGG 60.041 55.000 9.51 0.00 0.00 5.69
542 563 0.940126 AGCTGTCTGACTTTGTTGCG 59.060 50.000 9.51 0.00 0.00 4.85
543 564 1.070309 CGAGCTGTCTGACTTTGTTGC 60.070 52.381 9.51 4.33 0.00 4.17
544 565 1.070309 GCGAGCTGTCTGACTTTGTTG 60.070 52.381 9.51 0.00 0.00 3.33
578 602 1.602888 ACCTGCTGCTCTGCTTTGG 60.603 57.895 0.00 3.40 0.00 3.28
682 721 4.778415 CTGGACGTGGACGGAGCG 62.778 72.222 0.00 0.00 44.95 5.03
693 732 3.103911 GGCGACGTGAACTGGACG 61.104 66.667 0.00 0.00 42.62 4.79
694 733 1.733399 GAGGCGACGTGAACTGGAC 60.733 63.158 0.00 0.00 0.00 4.02
695 734 2.649034 GAGGCGACGTGAACTGGA 59.351 61.111 0.00 0.00 0.00 3.86
696 735 2.432628 GGAGGCGACGTGAACTGG 60.433 66.667 0.00 0.00 0.00 4.00
698 737 2.600769 AGGGAGGCGACGTGAACT 60.601 61.111 0.00 0.00 0.00 3.01
699 738 2.432628 CAGGGAGGCGACGTGAAC 60.433 66.667 0.00 0.00 0.00 3.18
700 739 3.691342 CCAGGGAGGCGACGTGAA 61.691 66.667 0.00 0.00 0.00 3.18
908 983 3.641046 TCTCCAGATCTCTTCTTGGGAG 58.359 50.000 14.14 14.14 42.30 4.30
910 985 4.029520 TCTTCTCCAGATCTCTTCTTGGG 58.970 47.826 0.00 0.00 29.93 4.12
939 1021 1.821136 GCTAGCAACAATGGCCTTCTT 59.179 47.619 10.63 0.00 0.00 2.52
940 1022 1.467920 GCTAGCAACAATGGCCTTCT 58.532 50.000 10.63 0.00 0.00 2.85
960 1043 1.072331 TGCAGAAAGAGAAGGTGGGTC 59.928 52.381 0.00 0.00 0.00 4.46
961 1044 1.140312 TGCAGAAAGAGAAGGTGGGT 58.860 50.000 0.00 0.00 0.00 4.51
968 1051 3.755378 GCAAGGAAGATGCAGAAAGAGAA 59.245 43.478 0.00 0.00 43.29 2.87
973 1056 2.165167 CAGGCAAGGAAGATGCAGAAA 58.835 47.619 0.00 0.00 45.60 2.52
978 1061 1.372087 CGACCAGGCAAGGAAGATGC 61.372 60.000 2.81 0.00 43.08 3.91
980 1063 1.078143 GCGACCAGGCAAGGAAGAT 60.078 57.895 2.81 0.00 0.00 2.40
1113 1217 0.975040 TGGAGAGCCTCTTCCTGAGC 60.975 60.000 0.00 0.00 41.35 4.26
1116 1220 1.521616 GCTGGAGAGCCTCTTCCTG 59.478 63.158 0.00 5.36 39.57 3.86
1117 1221 4.048696 GCTGGAGAGCCTCTTCCT 57.951 61.111 0.00 0.00 39.57 3.36
1125 1229 2.498726 CCGGAGAAGCTGGAGAGC 59.501 66.667 0.00 0.00 46.81 4.09
1562 1666 5.212532 ACCAGAACAATATGCAAAGCAAA 57.787 34.783 0.00 0.00 43.62 3.68
1573 1748 2.416296 CGCGGACACTACCAGAACAATA 60.416 50.000 0.00 0.00 0.00 1.90
1574 1749 1.671850 CGCGGACACTACCAGAACAAT 60.672 52.381 0.00 0.00 0.00 2.71
1575 1750 0.319211 CGCGGACACTACCAGAACAA 60.319 55.000 0.00 0.00 0.00 2.83
1576 1751 1.174078 TCGCGGACACTACCAGAACA 61.174 55.000 6.13 0.00 0.00 3.18
1577 1752 0.456312 CTCGCGGACACTACCAGAAC 60.456 60.000 6.13 0.00 0.00 3.01
1578 1753 0.607217 TCTCGCGGACACTACCAGAA 60.607 55.000 6.13 0.00 0.00 3.02
1579 1754 0.393944 ATCTCGCGGACACTACCAGA 60.394 55.000 6.13 0.00 0.00 3.86
1580 1755 0.029567 GATCTCGCGGACACTACCAG 59.970 60.000 6.13 0.00 0.00 4.00
1581 1756 1.381928 GGATCTCGCGGACACTACCA 61.382 60.000 6.13 0.00 0.00 3.25
1582 1757 1.359475 GGATCTCGCGGACACTACC 59.641 63.158 6.13 0.00 0.00 3.18
1583 1758 0.454600 TTGGATCTCGCGGACACTAC 59.545 55.000 6.13 0.00 0.00 2.73
1584 1759 1.179152 TTTGGATCTCGCGGACACTA 58.821 50.000 6.13 0.00 0.00 2.74
1585 1760 0.537188 ATTTGGATCTCGCGGACACT 59.463 50.000 6.13 0.00 0.00 3.55
1586 1761 2.128035 CTATTTGGATCTCGCGGACAC 58.872 52.381 6.13 0.01 0.00 3.67
1587 1762 2.028876 TCTATTTGGATCTCGCGGACA 58.971 47.619 6.13 0.00 0.00 4.02
1595 1770 4.083431 CCGTCGTCGTATCTATTTGGATCT 60.083 45.833 0.71 0.00 35.01 2.75
1602 1777 2.551459 CCTTCCCGTCGTCGTATCTATT 59.449 50.000 0.71 0.00 35.01 1.73
1613 1788 4.194720 CGAGCCTCCTTCCCGTCG 62.195 72.222 0.00 0.00 0.00 5.12
1614 1789 3.069318 ACGAGCCTCCTTCCCGTC 61.069 66.667 0.00 0.00 0.00 4.79
1615 1790 3.382832 CACGAGCCTCCTTCCCGT 61.383 66.667 0.00 0.00 0.00 5.28
1616 1791 2.564553 CTTCACGAGCCTCCTTCCCG 62.565 65.000 0.00 0.00 0.00 5.14
1617 1792 1.219393 CTTCACGAGCCTCCTTCCC 59.781 63.158 0.00 0.00 0.00 3.97
1618 1793 0.608640 TTCTTCACGAGCCTCCTTCC 59.391 55.000 0.00 0.00 0.00 3.46
1619 1794 1.404851 CCTTCTTCACGAGCCTCCTTC 60.405 57.143 0.00 0.00 0.00 3.46
1620 1795 0.610687 CCTTCTTCACGAGCCTCCTT 59.389 55.000 0.00 0.00 0.00 3.36
1621 1796 0.251832 TCCTTCTTCACGAGCCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
1622 1797 0.174617 CTCCTTCTTCACGAGCCTCC 59.825 60.000 0.00 0.00 0.00 4.30
1623 1798 1.178276 TCTCCTTCTTCACGAGCCTC 58.822 55.000 0.00 0.00 0.00 4.70
1624 1799 1.548269 CTTCTCCTTCTTCACGAGCCT 59.452 52.381 0.00 0.00 0.00 4.58
1625 1800 1.546476 TCTTCTCCTTCTTCACGAGCC 59.454 52.381 0.00 0.00 0.00 4.70
1671 1850 1.075542 CGTGTTGCGAGCCATCTTAA 58.924 50.000 0.00 0.00 44.77 1.85
1795 3862 4.344968 ACCCAAAAGAATGGAAAGAACCAG 59.655 41.667 0.00 0.00 43.54 4.00
1905 3977 2.561733 TCAAGACGAACATAGGAGCG 57.438 50.000 0.00 0.00 0.00 5.03
2035 4118 5.394773 GCTCTACCAAAGGAAAACAAAACCA 60.395 40.000 0.00 0.00 0.00 3.67
2052 4135 3.031736 TCTGTGGTATTGAGGCTCTACC 58.968 50.000 20.56 20.56 36.30 3.18
2059 4142 3.190079 CGTGTCATCTGTGGTATTGAGG 58.810 50.000 0.00 0.00 0.00 3.86
2062 4145 2.345876 TGCGTGTCATCTGTGGTATTG 58.654 47.619 0.00 0.00 0.00 1.90
2162 4245 1.000607 TGCACCGACACTAGAGTCAAC 60.001 52.381 18.62 6.54 38.43 3.18
2164 4247 1.472878 GATGCACCGACACTAGAGTCA 59.527 52.381 18.62 1.66 38.43 3.41
2276 4377 3.382227 TCGTGTGTGAACTGTCTCCTTTA 59.618 43.478 0.00 0.00 0.00 1.85
2377 4483 4.951094 AGGCGGTGGTGCTTTATTTATAAA 59.049 37.500 0.00 0.00 34.52 1.40
2424 4530 2.602660 CCCAAAACACAAAACGCTTGAG 59.397 45.455 4.94 0.00 0.00 3.02
2442 4550 0.547075 TCACTTTCCCGAAACACCCA 59.453 50.000 0.00 0.00 0.00 4.51
2454 4562 6.203723 ACACTTTCTGCTCTAATGTCACTTTC 59.796 38.462 0.00 0.00 0.00 2.62
2478 4589 3.241067 TGCTCCGAACCTACATGTAAC 57.759 47.619 7.06 0.00 0.00 2.50
2479 4590 4.038763 CCTATGCTCCGAACCTACATGTAA 59.961 45.833 7.06 0.00 0.00 2.41
2480 4591 3.572682 CCTATGCTCCGAACCTACATGTA 59.427 47.826 5.25 5.25 0.00 2.29
2481 4592 2.365617 CCTATGCTCCGAACCTACATGT 59.634 50.000 2.69 2.69 0.00 3.21
2482 4593 2.365617 ACCTATGCTCCGAACCTACATG 59.634 50.000 0.00 0.00 0.00 3.21
2484 4595 1.754803 CACCTATGCTCCGAACCTACA 59.245 52.381 0.00 0.00 0.00 2.74
2486 4597 2.447408 TCACCTATGCTCCGAACCTA 57.553 50.000 0.00 0.00 0.00 3.08
2487 4598 1.482593 CTTCACCTATGCTCCGAACCT 59.517 52.381 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.