Multiple sequence alignment - TraesCS6B01G307800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G307800 chr6B 100.000 9534 0 0 1 9534 551805003 551795470 0.000000e+00 17607.0
1 TraesCS6B01G307800 chr4B 95.165 5543 145 30 333 5826 86073365 86067897 0.000000e+00 8637.0
2 TraesCS6B01G307800 chr4B 95.735 3212 92 14 5952 9123 86067515 86064309 0.000000e+00 5131.0
3 TraesCS6B01G307800 chr4B 92.832 279 15 2 9258 9531 86064302 86064024 5.360000e-107 399.0
4 TraesCS6B01G307800 chr4B 99.254 134 1 0 9124 9257 70582911 70583044 9.570000e-60 243.0
5 TraesCS6B01G307800 chr4B 96.296 135 1 2 5826 5956 86067723 86067589 1.610000e-52 219.0
6 TraesCS6B01G307800 chr4A 93.843 4028 177 28 326 4320 539288164 539292153 0.000000e+00 5999.0
7 TraesCS6B01G307800 chr4A 92.705 1974 111 20 7165 9123 539294163 539296118 0.000000e+00 2817.0
8 TraesCS6B01G307800 chr4A 97.194 1283 33 3 4319 5600 539292203 539293483 0.000000e+00 2167.0
9 TraesCS6B01G307800 chr4A 96.914 324 8 1 1 322 42255091 42254768 8.420000e-150 542.0
10 TraesCS6B01G307800 chr4A 90.262 267 8 5 6752 7018 539293584 539293832 5.520000e-87 333.0
11 TraesCS6B01G307800 chr4A 91.061 179 11 2 9338 9514 539296600 539296775 4.450000e-58 237.0
12 TraesCS6B01G307800 chr4A 96.774 124 4 0 7041 7164 539293993 539294116 3.490000e-49 207.0
13 TraesCS6B01G307800 chr4D 92.109 1977 83 19 7165 9123 57480171 57478250 0.000000e+00 2719.0
14 TraesCS6B01G307800 chr4D 92.559 1895 86 24 320 2172 57489421 57487540 0.000000e+00 2667.0
15 TraesCS6B01G307800 chr4D 92.951 1603 89 13 2724 4320 57486846 57485262 0.000000e+00 2313.0
16 TraesCS6B01G307800 chr4D 97.274 1284 30 5 4319 5600 57485212 57483932 0.000000e+00 2172.0
17 TraesCS6B01G307800 chr4D 91.498 494 29 6 2235 2727 57487525 57487044 0.000000e+00 667.0
18 TraesCS6B01G307800 chr4D 89.434 265 25 1 9258 9522 57478243 57477982 1.980000e-86 331.0
19 TraesCS6B01G307800 chr4D 96.907 194 5 1 6752 6945 57483830 57483638 3.320000e-84 324.0
20 TraesCS6B01G307800 chr4D 95.968 124 5 0 7041 7164 57480341 57480218 1.620000e-47 202.0
21 TraesCS6B01G307800 chr4D 96.721 61 2 0 6960 7020 57480559 57480499 1.690000e-17 102.0
22 TraesCS6B01G307800 chr1B 97.500 320 6 2 1 320 346968404 346968721 6.510000e-151 545.0
23 TraesCS6B01G307800 chr1B 96.865 319 6 1 1 319 391577808 391577494 1.820000e-146 531.0
24 TraesCS6B01G307800 chr1B 99.254 134 1 0 9124 9257 633714235 633714102 9.570000e-60 243.0
25 TraesCS6B01G307800 chr7B 97.179 319 9 0 1 319 504202637 504202955 3.030000e-149 540.0
26 TraesCS6B01G307800 chr7B 99.254 134 1 0 9124 9257 137683673 137683540 9.570000e-60 243.0
27 TraesCS6B01G307800 chr7B 97.222 36 1 0 3552 3587 673585626 673585661 2.870000e-05 62.1
28 TraesCS6B01G307800 chr2B 96.875 320 9 1 1 319 423904051 423904370 1.410000e-147 534.0
29 TraesCS6B01G307800 chr2B 92.812 320 11 2 1 320 655899910 655899603 4.060000e-123 453.0
30 TraesCS6B01G307800 chr2B 96.250 240 9 0 80 319 655905827 655906066 2.500000e-105 394.0
31 TraesCS6B01G307800 chr3A 95.298 319 11 1 1 319 443988337 443988023 3.970000e-138 503.0
32 TraesCS6B01G307800 chr3A 91.459 281 21 2 4041 4320 259332837 259333115 5.400000e-102 383.0
33 TraesCS6B01G307800 chr3A 99.254 134 1 0 9124 9257 105559703 105559836 9.570000e-60 243.0
34 TraesCS6B01G307800 chr3D 89.571 326 21 6 3 319 26040585 26040264 1.490000e-107 401.0
35 TraesCS6B01G307800 chr3D 91.429 280 23 1 4041 4320 219574499 219574777 5.400000e-102 383.0
36 TraesCS6B01G307800 chr3D 100.000 28 0 0 3558 3585 31993342 31993315 1.700000e-02 52.8
37 TraesCS6B01G307800 chr3B 91.786 280 22 1 4041 4320 293747630 293747908 1.160000e-103 388.0
38 TraesCS6B01G307800 chr2D 91.071 280 24 1 4041 4320 380416895 380416617 2.510000e-100 377.0
39 TraesCS6B01G307800 chr5D 90.714 280 26 0 4041 4320 125808027 125808306 3.250000e-99 374.0
40 TraesCS6B01G307800 chr5D 98.507 134 2 0 9124 9257 329128628 329128761 4.450000e-58 237.0
41 TraesCS6B01G307800 chr5D 86.905 84 11 0 5395 5478 354938961 354939044 2.830000e-15 95.3
42 TraesCS6B01G307800 chr5A 90.747 281 25 1 4041 4320 139934572 139934852 3.250000e-99 374.0
43 TraesCS6B01G307800 chr5A 86.905 84 11 0 5395 5478 457080528 457080611 2.830000e-15 95.3
44 TraesCS6B01G307800 chrUn 99.254 134 1 0 9124 9257 261570498 261570631 9.570000e-60 243.0
45 TraesCS6B01G307800 chrUn 98.507 134 2 0 9124 9257 53260270 53260403 4.450000e-58 237.0
46 TraesCS6B01G307800 chrUn 98.507 134 2 0 9124 9257 388894369 388894236 4.450000e-58 237.0
47 TraesCS6B01G307800 chr1A 99.254 134 1 0 9124 9257 554479514 554479381 9.570000e-60 243.0
48 TraesCS6B01G307800 chr5B 85.714 84 12 0 5395 5478 419724420 419724503 1.320000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G307800 chr6B 551795470 551805003 9533 True 17607.000000 17607 100.000000 1 9534 1 chr6B.!!$R1 9533
1 TraesCS6B01G307800 chr4B 86064024 86073365 9341 True 3596.500000 8637 95.007000 333 9531 4 chr4B.!!$R1 9198
2 TraesCS6B01G307800 chr4A 539288164 539296775 8611 False 1960.000000 5999 93.639833 326 9514 6 chr4A.!!$F1 9188
3 TraesCS6B01G307800 chr4D 57477982 57489421 11439 True 1277.444444 2719 93.935667 320 9522 9 chr4D.!!$R1 9202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.030603 GGGGAGAGAACAGGGGAGAT 60.031 60.000 0.00 0.00 0.00 2.75 F
54 55 0.034380 AACAGGGGAGATCGAGACGA 60.034 55.000 0.00 0.00 41.13 4.20 F
246 247 0.039798 CATGTACCGGGACCGTATCG 60.040 60.000 16.09 0.00 37.81 2.92 F
285 286 0.108756 GGACTGAAGTGGACGTAGCC 60.109 60.000 0.00 0.00 0.00 3.93 F
623 642 0.307453 CACTCTCTCCGCATCTCTCG 59.693 60.000 0.00 0.00 0.00 4.04 F
864 896 0.377203 GCTAATTTTCTCGCGGGGTG 59.623 55.000 5.94 0.00 0.00 4.61 F
1899 1945 1.374343 TAGGTCTCTAGTGCACCGCG 61.374 60.000 14.63 0.00 35.13 6.46 F
2242 2301 1.807165 CTCTGATCACGCACCCACG 60.807 63.158 0.00 0.00 39.50 4.94 F
2579 2642 1.846007 TTGTGGGTTTGCTCACTTGT 58.154 45.000 0.00 0.00 46.03 3.16 F
3677 3943 2.280797 ATCAGCGCACACCGTTGT 60.281 55.556 11.47 0.00 46.51 3.32 F
4368 4691 0.670162 TTTGCTGCAACCTCAGAAGC 59.330 50.000 15.72 0.00 36.19 3.86 F
4892 5215 0.741221 GGGAACACTAGCGCTTGGAG 60.741 60.000 18.68 10.21 0.00 3.86 F
6025 6606 0.322098 ATTCGGAACCGCCATCACAA 60.322 50.000 8.48 0.00 39.59 3.33 F
6945 7603 1.671328 GCGTTAGGAGGATCAAAAGGC 59.329 52.381 0.00 0.00 35.88 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 1811 0.613777 AGCAGGCAACAGGTACCTAC 59.386 55.000 15.80 4.46 41.41 3.18 R
1774 1817 2.281761 CCGAAGCAGGCAACAGGT 60.282 61.111 0.00 0.00 41.41 4.00 R
2193 2252 0.179054 GGCGGGGGATCAGTAAAGTC 60.179 60.000 0.00 0.00 0.00 3.01 R
2263 2322 4.380843 TTGTTGGGAATAGAAAGCCAGA 57.619 40.909 0.00 0.00 0.00 3.86 R
2322 2382 1.005450 GAATTGGGCAGGGGTGTTAGA 59.995 52.381 0.00 0.00 0.00 2.10 R
2433 2494 3.904965 TGGTAACTCAGTATGGTGTTGGA 59.095 43.478 0.00 0.00 35.55 3.53 R
3054 3318 1.280133 CTGATCCTTGACCAAGAGGCA 59.720 52.381 11.06 5.18 40.79 4.75 R
3055 3319 1.407989 CCTGATCCTTGACCAAGAGGC 60.408 57.143 11.06 1.22 40.79 4.70 R
3876 4142 2.851263 ACTTGAACGATAAGCCACCA 57.149 45.000 0.00 0.00 0.00 4.17 R
5624 5949 4.551702 AGGCTGTTGTGTACATATCACA 57.448 40.909 0.00 0.00 42.84 3.58 R
5909 6412 3.461061 TGCTATCGAGAAGCAGAAATGG 58.539 45.455 18.43 0.00 44.78 3.16 R
6678 7261 1.275666 ATCACTTGACCACCGATCCA 58.724 50.000 0.00 0.00 0.00 3.41 R
7977 11927 0.829333 TGCAACAACTGGGCAAACAT 59.171 45.000 0.00 0.00 34.05 2.71 R
8643 12602 0.935196 CGGAGGTAAAAGCGGTATGC 59.065 55.000 0.00 0.00 46.98 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.683432 GCTCGCACTCCTCTGTTT 57.317 55.556 0.00 0.00 0.00 2.83
18 19 3.814577 GCTCGCACTCCTCTGTTTA 57.185 52.632 0.00 0.00 0.00 2.01
19 20 1.634702 GCTCGCACTCCTCTGTTTAG 58.365 55.000 0.00 0.00 0.00 1.85
20 21 1.634702 CTCGCACTCCTCTGTTTAGC 58.365 55.000 0.00 0.00 0.00 3.09
21 22 0.109272 TCGCACTCCTCTGTTTAGCG 60.109 55.000 0.00 0.00 44.45 4.26
22 23 0.388649 CGCACTCCTCTGTTTAGCGT 60.389 55.000 0.00 0.00 38.98 5.07
23 24 1.071605 GCACTCCTCTGTTTAGCGTG 58.928 55.000 0.00 0.00 0.00 5.34
24 25 1.714794 CACTCCTCTGTTTAGCGTGG 58.285 55.000 0.00 0.00 0.00 4.94
25 26 0.608640 ACTCCTCTGTTTAGCGTGGG 59.391 55.000 0.00 0.00 0.00 4.61
26 27 0.108138 CTCCTCTGTTTAGCGTGGGG 60.108 60.000 0.00 0.00 0.00 4.96
27 28 1.078426 CCTCTGTTTAGCGTGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
43 44 2.454941 GGGGGAGAGAACAGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
44 45 1.690985 GGGGGAGAGAACAGGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
45 46 1.392534 GGGGAGAGAACAGGGGAGA 59.607 63.158 0.00 0.00 0.00 3.71
46 47 0.030603 GGGGAGAGAACAGGGGAGAT 60.031 60.000 0.00 0.00 0.00 2.75
47 48 1.419381 GGGAGAGAACAGGGGAGATC 58.581 60.000 0.00 0.00 0.00 2.75
48 49 1.036707 GGAGAGAACAGGGGAGATCG 58.963 60.000 0.00 0.00 0.00 3.69
49 50 1.410365 GGAGAGAACAGGGGAGATCGA 60.410 57.143 0.00 0.00 0.00 3.59
50 51 1.953686 GAGAGAACAGGGGAGATCGAG 59.046 57.143 0.00 0.00 0.00 4.04
51 52 1.566703 AGAGAACAGGGGAGATCGAGA 59.433 52.381 0.00 0.00 0.00 4.04
52 53 1.679153 GAGAACAGGGGAGATCGAGAC 59.321 57.143 0.00 0.00 0.00 3.36
53 54 0.382515 GAACAGGGGAGATCGAGACG 59.617 60.000 0.00 0.00 0.00 4.18
54 55 0.034380 AACAGGGGAGATCGAGACGA 60.034 55.000 0.00 0.00 41.13 4.20
55 56 0.464735 ACAGGGGAGATCGAGACGAG 60.465 60.000 0.00 0.00 39.91 4.18
56 57 0.179043 CAGGGGAGATCGAGACGAGA 60.179 60.000 0.00 0.00 39.91 4.04
57 58 0.547075 AGGGGAGATCGAGACGAGAA 59.453 55.000 0.00 0.00 39.91 2.87
58 59 0.664224 GGGGAGATCGAGACGAGAAC 59.336 60.000 0.00 0.00 39.91 3.01
59 60 1.380524 GGGAGATCGAGACGAGAACA 58.619 55.000 0.00 0.00 39.91 3.18
60 61 1.332375 GGGAGATCGAGACGAGAACAG 59.668 57.143 0.00 0.00 39.91 3.16
61 62 1.332375 GGAGATCGAGACGAGAACAGG 59.668 57.143 0.00 0.00 39.91 4.00
62 63 1.332375 GAGATCGAGACGAGAACAGGG 59.668 57.143 0.00 0.00 39.91 4.45
63 64 0.382515 GATCGAGACGAGAACAGGGG 59.617 60.000 0.00 0.00 39.91 4.79
64 65 1.038130 ATCGAGACGAGAACAGGGGG 61.038 60.000 0.00 0.00 39.91 5.40
65 66 2.579738 GAGACGAGAACAGGGGGC 59.420 66.667 0.00 0.00 0.00 5.80
66 67 2.203788 AGACGAGAACAGGGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
67 68 1.827399 GAGACGAGAACAGGGGGCAA 61.827 60.000 0.00 0.00 0.00 4.52
68 69 1.201429 AGACGAGAACAGGGGGCAAT 61.201 55.000 0.00 0.00 0.00 3.56
69 70 0.322546 GACGAGAACAGGGGGCAATT 60.323 55.000 0.00 0.00 0.00 2.32
70 71 0.112412 ACGAGAACAGGGGGCAATTT 59.888 50.000 0.00 0.00 0.00 1.82
71 72 0.527565 CGAGAACAGGGGGCAATTTG 59.472 55.000 0.00 0.00 0.00 2.32
72 73 0.247460 GAGAACAGGGGGCAATTTGC 59.753 55.000 13.04 13.04 44.08 3.68
73 74 1.079888 GAACAGGGGGCAATTTGCG 60.080 57.895 14.83 3.73 46.21 4.85
74 75 1.531739 GAACAGGGGGCAATTTGCGA 61.532 55.000 14.83 0.00 46.21 5.10
75 76 1.118356 AACAGGGGGCAATTTGCGAA 61.118 50.000 14.83 0.00 46.21 4.70
76 77 1.118356 ACAGGGGGCAATTTGCGAAA 61.118 50.000 14.83 0.00 46.21 3.46
77 78 0.249955 CAGGGGGCAATTTGCGAAAT 59.750 50.000 14.83 0.00 46.21 2.17
78 79 1.480137 CAGGGGGCAATTTGCGAAATA 59.520 47.619 14.83 0.00 46.21 1.40
79 80 2.093764 CAGGGGGCAATTTGCGAAATAA 60.094 45.455 14.83 0.00 46.21 1.40
80 81 2.093711 AGGGGGCAATTTGCGAAATAAC 60.094 45.455 14.83 0.00 46.21 1.89
81 82 2.354203 GGGGGCAATTTGCGAAATAACA 60.354 45.455 14.83 0.00 46.21 2.41
82 83 2.929398 GGGGCAATTTGCGAAATAACAG 59.071 45.455 14.83 0.00 46.21 3.16
83 84 2.929398 GGGCAATTTGCGAAATAACAGG 59.071 45.455 14.83 0.00 46.21 4.00
84 85 3.584834 GGCAATTTGCGAAATAACAGGT 58.415 40.909 14.83 0.00 46.21 4.00
85 86 3.367630 GGCAATTTGCGAAATAACAGGTG 59.632 43.478 14.83 0.00 46.21 4.00
86 87 3.367630 GCAATTTGCGAAATAACAGGTGG 59.632 43.478 5.49 0.00 31.71 4.61
87 88 3.866883 ATTTGCGAAATAACAGGTGGG 57.133 42.857 0.00 0.00 0.00 4.61
88 89 1.540267 TTGCGAAATAACAGGTGGGG 58.460 50.000 0.00 0.00 0.00 4.96
89 90 0.963355 TGCGAAATAACAGGTGGGGC 60.963 55.000 0.00 0.00 0.00 5.80
90 91 0.679960 GCGAAATAACAGGTGGGGCT 60.680 55.000 0.00 0.00 0.00 5.19
91 92 1.407712 GCGAAATAACAGGTGGGGCTA 60.408 52.381 0.00 0.00 0.00 3.93
92 93 2.561569 CGAAATAACAGGTGGGGCTAG 58.438 52.381 0.00 0.00 0.00 3.42
93 94 2.169769 CGAAATAACAGGTGGGGCTAGA 59.830 50.000 0.00 0.00 0.00 2.43
94 95 3.741388 CGAAATAACAGGTGGGGCTAGAG 60.741 52.174 0.00 0.00 0.00 2.43
95 96 1.132500 ATAACAGGTGGGGCTAGAGC 58.868 55.000 0.00 0.00 41.14 4.09
96 97 0.042731 TAACAGGTGGGGCTAGAGCT 59.957 55.000 0.81 0.00 41.70 4.09
97 98 1.557269 AACAGGTGGGGCTAGAGCTG 61.557 60.000 0.00 6.78 42.26 4.24
98 99 1.687146 CAGGTGGGGCTAGAGCTGA 60.687 63.158 0.00 0.00 39.57 4.26
99 100 1.687493 AGGTGGGGCTAGAGCTGAC 60.687 63.158 0.00 0.00 41.70 3.51
100 101 1.687493 GGTGGGGCTAGAGCTGACT 60.687 63.158 0.00 0.00 41.70 3.41
101 102 1.519719 GTGGGGCTAGAGCTGACTG 59.480 63.158 0.00 0.00 41.70 3.51
102 103 1.687146 TGGGGCTAGAGCTGACTGG 60.687 63.158 0.00 0.00 41.70 4.00
103 104 1.687493 GGGGCTAGAGCTGACTGGT 60.687 63.158 0.00 0.00 41.70 4.00
104 105 1.519719 GGGCTAGAGCTGACTGGTG 59.480 63.158 0.00 0.00 41.70 4.17
105 106 1.519719 GGCTAGAGCTGACTGGTGG 59.480 63.158 0.00 0.00 41.70 4.61
106 107 1.519719 GCTAGAGCTGACTGGTGGG 59.480 63.158 0.00 0.00 38.21 4.61
107 108 1.261238 GCTAGAGCTGACTGGTGGGT 61.261 60.000 0.00 0.00 38.21 4.51
108 109 0.820871 CTAGAGCTGACTGGTGGGTC 59.179 60.000 0.00 0.00 36.81 4.46
109 110 0.614979 TAGAGCTGACTGGTGGGTCC 60.615 60.000 0.00 0.00 35.54 4.46
110 111 3.302347 GAGCTGACTGGTGGGTCCG 62.302 68.421 0.00 0.00 39.52 4.79
111 112 3.311110 GCTGACTGGTGGGTCCGA 61.311 66.667 0.00 0.00 39.52 4.55
112 113 2.973899 CTGACTGGTGGGTCCGAG 59.026 66.667 0.00 0.00 39.52 4.63
113 114 3.302347 CTGACTGGTGGGTCCGAGC 62.302 68.421 0.00 0.00 39.52 5.03
114 115 2.997897 GACTGGTGGGTCCGAGCT 60.998 66.667 4.63 0.00 39.52 4.09
115 116 3.302347 GACTGGTGGGTCCGAGCTG 62.302 68.421 8.16 8.16 39.52 4.24
116 117 2.997315 CTGGTGGGTCCGAGCTGA 60.997 66.667 4.63 0.00 39.52 4.26
117 118 3.302347 CTGGTGGGTCCGAGCTGAC 62.302 68.421 4.63 0.00 39.52 3.51
118 119 2.997897 GGTGGGTCCGAGCTGACT 60.998 66.667 0.00 0.00 35.54 3.41
119 120 2.262915 GTGGGTCCGAGCTGACTG 59.737 66.667 0.00 0.00 35.54 3.51
120 121 2.997315 TGGGTCCGAGCTGACTGG 60.997 66.667 0.00 0.00 35.54 4.00
121 122 2.997897 GGGTCCGAGCTGACTGGT 60.998 66.667 0.00 0.00 35.54 4.00
122 123 2.262915 GGTCCGAGCTGACTGGTG 59.737 66.667 0.00 0.00 35.54 4.17
123 124 2.262915 GTCCGAGCTGACTGGTGG 59.737 66.667 0.00 0.00 32.39 4.61
124 125 2.997315 TCCGAGCTGACTGGTGGG 60.997 66.667 6.28 6.28 42.35 4.61
125 126 3.314331 CCGAGCTGACTGGTGGGT 61.314 66.667 0.00 0.00 37.29 4.51
126 127 2.262915 CGAGCTGACTGGTGGGTC 59.737 66.667 0.00 0.00 36.81 4.46
127 128 2.665603 GAGCTGACTGGTGGGTCC 59.334 66.667 0.00 0.00 35.54 4.46
128 129 2.930562 AGCTGACTGGTGGGTCCC 60.931 66.667 0.00 0.00 35.54 4.46
129 130 4.394712 GCTGACTGGTGGGTCCCG 62.395 72.222 2.65 0.00 35.54 5.14
130 131 3.706373 CTGACTGGTGGGTCCCGG 61.706 72.222 2.65 0.00 35.54 5.73
144 145 4.155733 CCGGGCTGACGTGGCATA 62.156 66.667 11.40 0.00 0.00 3.14
145 146 2.890474 CGGGCTGACGTGGCATAC 60.890 66.667 11.40 1.94 0.00 2.39
146 147 2.267642 GGGCTGACGTGGCATACA 59.732 61.111 11.40 0.00 0.00 2.29
147 148 1.815421 GGGCTGACGTGGCATACAG 60.815 63.158 11.40 11.99 0.00 2.74
148 149 3.093278 GCTGACGTGGCATACAGC 58.907 61.111 20.72 20.72 46.25 4.40
157 158 4.320971 GCATACAGCGGAGTACGG 57.679 61.111 0.00 0.00 44.51 4.02
179 180 3.737182 CGTCGTGCACGTGTAGAG 58.263 61.111 35.74 18.52 44.07 2.43
180 181 2.426183 CGTCGTGCACGTGTAGAGC 61.426 63.158 35.74 17.52 44.07 4.09
181 182 2.087009 GTCGTGCACGTGTAGAGCC 61.087 63.158 35.74 12.71 40.80 4.70
182 183 2.049526 CGTGCACGTGTAGAGCCA 60.050 61.111 30.50 1.95 35.49 4.75
183 184 2.088763 CGTGCACGTGTAGAGCCAG 61.089 63.158 30.50 0.00 35.49 4.85
184 185 1.738099 GTGCACGTGTAGAGCCAGG 60.738 63.158 18.38 0.00 35.49 4.45
185 186 1.906333 TGCACGTGTAGAGCCAGGA 60.906 57.895 18.38 0.00 35.49 3.86
186 187 1.446272 GCACGTGTAGAGCCAGGAC 60.446 63.158 18.38 0.00 0.00 3.85
187 188 1.878656 GCACGTGTAGAGCCAGGACT 61.879 60.000 18.38 0.00 0.00 3.85
188 189 0.109086 CACGTGTAGAGCCAGGACTG 60.109 60.000 7.58 0.00 0.00 3.51
197 198 4.473643 CCAGGACTGGCGTTTCAA 57.526 55.556 5.27 0.00 44.73 2.69
198 199 2.247790 CCAGGACTGGCGTTTCAAG 58.752 57.895 5.27 0.00 44.73 3.02
199 200 1.576421 CAGGACTGGCGTTTCAAGC 59.424 57.895 0.00 0.00 0.00 4.01
200 201 0.886490 CAGGACTGGCGTTTCAAGCT 60.886 55.000 0.00 0.00 34.52 3.74
201 202 0.603975 AGGACTGGCGTTTCAAGCTC 60.604 55.000 0.00 0.00 34.52 4.09
202 203 0.884704 GGACTGGCGTTTCAAGCTCA 60.885 55.000 0.00 0.00 34.52 4.26
203 204 0.514691 GACTGGCGTTTCAAGCTCAG 59.485 55.000 0.00 0.00 38.20 3.35
204 205 0.886490 ACTGGCGTTTCAAGCTCAGG 60.886 55.000 0.00 0.00 37.28 3.86
205 206 1.580845 CTGGCGTTTCAAGCTCAGGG 61.581 60.000 0.00 0.00 32.85 4.45
206 207 1.302511 GGCGTTTCAAGCTCAGGGA 60.303 57.895 0.00 0.00 34.52 4.20
207 208 1.578206 GGCGTTTCAAGCTCAGGGAC 61.578 60.000 0.00 0.00 34.52 4.46
208 209 1.578206 GCGTTTCAAGCTCAGGGACC 61.578 60.000 0.00 0.00 0.00 4.46
209 210 1.291877 CGTTTCAAGCTCAGGGACCG 61.292 60.000 0.00 0.00 0.00 4.79
210 211 0.250338 GTTTCAAGCTCAGGGACCGT 60.250 55.000 0.00 0.00 0.00 4.83
211 212 1.001633 GTTTCAAGCTCAGGGACCGTA 59.998 52.381 0.00 0.00 0.00 4.02
212 213 1.568504 TTCAAGCTCAGGGACCGTAT 58.431 50.000 0.00 0.00 0.00 3.06
213 214 1.568504 TCAAGCTCAGGGACCGTATT 58.431 50.000 0.00 0.00 0.00 1.89
214 215 1.207089 TCAAGCTCAGGGACCGTATTG 59.793 52.381 0.00 0.00 0.00 1.90
215 216 1.207089 CAAGCTCAGGGACCGTATTGA 59.793 52.381 0.00 0.00 0.00 2.57
216 217 0.824759 AGCTCAGGGACCGTATTGAC 59.175 55.000 0.00 0.00 0.00 3.18
234 235 5.766702 TTGACGACGTATTTTCATGTACC 57.233 39.130 0.00 0.00 0.00 3.34
235 236 3.853103 TGACGACGTATTTTCATGTACCG 59.147 43.478 0.00 0.00 0.00 4.02
236 237 3.181397 ACGACGTATTTTCATGTACCGG 58.819 45.455 0.00 0.00 0.00 5.28
237 238 2.536803 CGACGTATTTTCATGTACCGGG 59.463 50.000 6.32 0.00 0.00 5.73
238 239 3.734597 CGACGTATTTTCATGTACCGGGA 60.735 47.826 6.32 0.00 0.00 5.14
239 240 3.524541 ACGTATTTTCATGTACCGGGAC 58.475 45.455 10.93 10.93 0.00 4.46
240 241 2.867975 CGTATTTTCATGTACCGGGACC 59.132 50.000 16.09 0.00 0.00 4.46
241 242 2.032680 ATTTTCATGTACCGGGACCG 57.967 50.000 16.09 5.55 39.44 4.79
242 243 0.686224 TTTTCATGTACCGGGACCGT 59.314 50.000 16.09 0.00 37.81 4.83
243 244 1.554836 TTTCATGTACCGGGACCGTA 58.445 50.000 16.09 0.00 37.81 4.02
244 245 1.779221 TTCATGTACCGGGACCGTAT 58.221 50.000 16.09 0.00 37.81 3.06
245 246 1.321474 TCATGTACCGGGACCGTATC 58.679 55.000 16.09 0.00 37.81 2.24
246 247 0.039798 CATGTACCGGGACCGTATCG 60.040 60.000 16.09 0.00 37.81 2.92
247 248 0.179020 ATGTACCGGGACCGTATCGA 60.179 55.000 16.09 0.00 37.81 3.59
248 249 0.179020 TGTACCGGGACCGTATCGAT 60.179 55.000 16.09 2.16 37.81 3.59
249 250 0.239347 GTACCGGGACCGTATCGATG 59.761 60.000 5.10 0.00 37.81 3.84
250 251 1.518056 TACCGGGACCGTATCGATGC 61.518 60.000 8.54 5.66 37.81 3.91
251 252 2.725641 CGGGACCGTATCGATGCA 59.274 61.111 14.06 0.00 34.35 3.96
252 253 1.066752 CGGGACCGTATCGATGCAA 59.933 57.895 14.06 0.00 34.35 4.08
253 254 0.319555 CGGGACCGTATCGATGCAAT 60.320 55.000 14.06 0.14 34.35 3.56
254 255 1.068125 CGGGACCGTATCGATGCAATA 60.068 52.381 14.06 0.00 34.35 1.90
255 256 2.334838 GGGACCGTATCGATGCAATAC 58.665 52.381 14.06 1.19 0.00 1.89
257 258 1.385743 GACCGTATCGATGCAATACGC 59.614 52.381 19.34 7.34 46.59 4.42
273 274 3.786809 CGCAAGTACGAGGACTGAA 57.213 52.632 0.00 0.00 34.06 3.02
274 275 1.618861 CGCAAGTACGAGGACTGAAG 58.381 55.000 0.00 0.00 34.06 3.02
275 276 1.068472 CGCAAGTACGAGGACTGAAGT 60.068 52.381 0.00 0.00 34.06 3.01
276 277 2.329379 GCAAGTACGAGGACTGAAGTG 58.671 52.381 0.00 0.00 0.00 3.16
277 278 2.927014 GCAAGTACGAGGACTGAAGTGG 60.927 54.545 0.00 0.00 0.00 4.00
278 279 2.557056 CAAGTACGAGGACTGAAGTGGA 59.443 50.000 0.00 0.00 0.00 4.02
279 280 2.161030 AGTACGAGGACTGAAGTGGAC 58.839 52.381 0.00 0.00 0.00 4.02
280 281 1.135746 GTACGAGGACTGAAGTGGACG 60.136 57.143 0.00 0.00 0.00 4.79
281 282 0.822532 ACGAGGACTGAAGTGGACGT 60.823 55.000 0.00 0.00 0.00 4.34
282 283 1.162698 CGAGGACTGAAGTGGACGTA 58.837 55.000 0.00 0.00 0.00 3.57
283 284 1.130749 CGAGGACTGAAGTGGACGTAG 59.869 57.143 0.00 0.00 0.00 3.51
284 285 0.889306 AGGACTGAAGTGGACGTAGC 59.111 55.000 0.00 0.00 0.00 3.58
285 286 0.108756 GGACTGAAGTGGACGTAGCC 60.109 60.000 0.00 0.00 0.00 3.93
286 287 0.601558 GACTGAAGTGGACGTAGCCA 59.398 55.000 0.00 0.00 35.02 4.75
287 288 0.603569 ACTGAAGTGGACGTAGCCAG 59.396 55.000 0.00 0.00 38.95 4.85
288 289 0.737715 CTGAAGTGGACGTAGCCAGC 60.738 60.000 0.00 0.00 38.95 4.85
289 290 1.805945 GAAGTGGACGTAGCCAGCG 60.806 63.158 0.00 0.00 38.95 5.18
290 291 2.209064 GAAGTGGACGTAGCCAGCGA 62.209 60.000 0.00 0.00 38.95 4.93
291 292 2.202623 GTGGACGTAGCCAGCGAG 60.203 66.667 0.00 0.00 38.95 5.03
292 293 2.675423 TGGACGTAGCCAGCGAGT 60.675 61.111 0.00 0.00 33.10 4.18
293 294 1.377594 TGGACGTAGCCAGCGAGTA 60.378 57.895 0.00 0.00 33.10 2.59
294 295 1.063811 GGACGTAGCCAGCGAGTAC 59.936 63.158 0.00 0.00 0.00 2.73
295 296 1.297451 GACGTAGCCAGCGAGTACG 60.297 63.158 7.99 7.99 44.04 3.67
296 297 1.699656 GACGTAGCCAGCGAGTACGA 61.700 60.000 14.43 0.00 41.64 3.43
297 298 1.011019 CGTAGCCAGCGAGTACGAG 60.011 63.158 4.46 0.00 41.64 4.18
298 299 1.355916 GTAGCCAGCGAGTACGAGG 59.644 63.158 0.00 0.00 42.66 4.63
299 300 1.094073 GTAGCCAGCGAGTACGAGGA 61.094 60.000 0.00 0.00 42.66 3.71
300 301 1.094073 TAGCCAGCGAGTACGAGGAC 61.094 60.000 0.00 0.00 42.66 3.85
301 302 2.408241 GCCAGCGAGTACGAGGACT 61.408 63.158 0.00 0.00 42.66 3.85
302 303 1.094073 GCCAGCGAGTACGAGGACTA 61.094 60.000 0.00 0.00 42.66 2.59
303 304 1.595466 CCAGCGAGTACGAGGACTAT 58.405 55.000 0.00 0.00 42.66 2.12
304 305 2.763933 CCAGCGAGTACGAGGACTATA 58.236 52.381 0.00 0.00 42.66 1.31
305 306 2.737783 CCAGCGAGTACGAGGACTATAG 59.262 54.545 0.00 0.00 42.66 1.31
306 307 3.554544 CCAGCGAGTACGAGGACTATAGA 60.555 52.174 6.78 0.00 42.66 1.98
307 308 4.247258 CAGCGAGTACGAGGACTATAGAT 58.753 47.826 6.78 0.00 42.66 1.98
308 309 4.092237 CAGCGAGTACGAGGACTATAGATG 59.908 50.000 6.78 0.00 42.66 2.90
309 310 3.181518 GCGAGTACGAGGACTATAGATGC 60.182 52.174 6.78 0.00 42.66 3.91
310 311 3.995048 CGAGTACGAGGACTATAGATGCA 59.005 47.826 6.78 0.00 42.66 3.96
311 312 4.451435 CGAGTACGAGGACTATAGATGCAA 59.549 45.833 6.78 0.00 42.66 4.08
312 313 5.122554 CGAGTACGAGGACTATAGATGCAAT 59.877 44.000 6.78 0.00 42.66 3.56
313 314 6.348622 CGAGTACGAGGACTATAGATGCAATT 60.349 42.308 6.78 0.00 42.66 2.32
314 315 7.148457 CGAGTACGAGGACTATAGATGCAATTA 60.148 40.741 6.78 0.00 42.66 1.40
315 316 8.582657 AGTACGAGGACTATAGATGCAATTAT 57.417 34.615 6.78 0.00 0.00 1.28
316 317 8.679100 AGTACGAGGACTATAGATGCAATTATC 58.321 37.037 6.78 0.00 0.00 1.75
317 318 7.710676 ACGAGGACTATAGATGCAATTATCT 57.289 36.000 6.78 0.00 40.39 1.98
318 319 7.767261 ACGAGGACTATAGATGCAATTATCTC 58.233 38.462 6.78 0.00 38.35 2.75
382 384 1.068741 AGAACAAGGAGCGAAGAACGT 59.931 47.619 0.00 0.00 44.60 3.99
411 413 2.768492 CCATCTTGGCTTCGCTGGC 61.768 63.158 0.00 0.00 0.00 4.85
553 568 0.547075 CCGGAGAGAGGAGTACAGGA 59.453 60.000 0.00 0.00 0.00 3.86
557 572 2.025699 GGAGAGAGGAGTACAGGACAGT 60.026 54.545 0.00 0.00 0.00 3.55
623 642 0.307453 CACTCTCTCCGCATCTCTCG 59.693 60.000 0.00 0.00 0.00 4.04
676 697 2.933928 GCCCCAATTCGATACCGTATCC 60.934 54.545 12.09 0.00 37.05 2.59
680 701 4.703575 CCCAATTCGATACCGTATCCTCTA 59.296 45.833 12.09 0.00 37.05 2.43
684 705 3.332919 TCGATACCGTATCCTCTACTGC 58.667 50.000 12.09 0.00 37.05 4.40
685 706 3.007723 TCGATACCGTATCCTCTACTGCT 59.992 47.826 12.09 0.00 37.05 4.24
751 783 2.804572 CGATGAGGCACTTCGATCCATT 60.805 50.000 13.47 0.00 45.01 3.16
823 855 3.072468 CTTACCCTCACGCCCCGA 61.072 66.667 0.00 0.00 0.00 5.14
833 865 4.794648 CGCCCCGATTTCAGCCCA 62.795 66.667 0.00 0.00 0.00 5.36
864 896 0.377203 GCTAATTTTCTCGCGGGGTG 59.623 55.000 5.94 0.00 0.00 4.61
893 928 9.715121 AATTTGGCTGATTAATTAATGGCTATG 57.285 29.630 15.39 1.17 0.00 2.23
907 942 4.420522 TGGCTATGTATGCAGATCAACA 57.579 40.909 0.00 0.00 0.00 3.33
956 991 3.249189 TCGCCAAGGCTGAGGGTT 61.249 61.111 9.73 0.00 39.32 4.11
957 992 2.747855 CGCCAAGGCTGAGGGTTC 60.748 66.667 9.73 0.00 39.32 3.62
1011 1053 6.528321 TCACAGAGAATCAATGTCTGAGTTT 58.472 36.000 9.28 0.00 40.21 2.66
1155 1197 4.530875 CTGCCATTCCTGTTCTTCCTTAT 58.469 43.478 0.00 0.00 0.00 1.73
1272 1314 1.604593 CAACCACTTCCCCCAGCAG 60.605 63.158 0.00 0.00 0.00 4.24
1282 1324 1.756950 CCCCAGCAGTACTCCGCTA 60.757 63.158 7.35 0.00 36.50 4.26
1374 1416 3.936203 GGTCCTGTGTCGCCACCA 61.936 66.667 0.00 0.00 41.09 4.17
1395 1437 4.035675 CCAGTCTTCCTCTTTGTTGTTGAC 59.964 45.833 0.00 0.00 0.00 3.18
1407 1449 4.227512 TGTTGTTGACACTTGCATGATC 57.772 40.909 6.60 4.40 32.00 2.92
1434 1476 4.200092 AGGAAATCGGCTATTTGAAGTCC 58.800 43.478 1.27 0.00 37.93 3.85
1440 1482 1.936547 GGCTATTTGAAGTCCGCTCTG 59.063 52.381 0.00 0.00 0.00 3.35
1482 1524 2.056223 GGACCAATCCCTCGTCGGA 61.056 63.158 0.00 0.00 39.39 4.55
1533 1575 9.627123 CAGGTTATATTCACCTTTCCTTCATAA 57.373 33.333 3.93 0.00 42.45 1.90
1541 1583 7.831691 TCACCTTTCCTTCATAAATGTTTCA 57.168 32.000 0.00 0.00 0.00 2.69
1543 1585 7.505585 TCACCTTTCCTTCATAAATGTTTCACT 59.494 33.333 0.00 0.00 0.00 3.41
1561 1604 9.621629 TGTTTCACTTTTTATTAGTCTTCTGGA 57.378 29.630 0.00 0.00 0.00 3.86
1768 1811 4.278170 TGGTGTTTCAGCAGAAAGTATTGG 59.722 41.667 4.30 0.00 43.95 3.16
1774 1817 6.614694 TTCAGCAGAAAGTATTGGTAGGTA 57.385 37.500 0.00 0.00 0.00 3.08
1796 1839 1.598130 GTTGCCTGCTTCGGAGTGT 60.598 57.895 0.00 0.00 0.00 3.55
1899 1945 1.374343 TAGGTCTCTAGTGCACCGCG 61.374 60.000 14.63 0.00 35.13 6.46
2242 2301 1.807165 CTCTGATCACGCACCCACG 60.807 63.158 0.00 0.00 39.50 4.94
2263 2322 5.179368 CACGGTGATAAGAACAAACATGTCT 59.821 40.000 0.74 0.00 0.00 3.41
2322 2382 3.053693 TCTTAGCATGCTGTGGGGTATTT 60.054 43.478 30.42 1.31 0.00 1.40
2429 2490 6.783482 GGGAGTTAGAAGTGGGATATAGACTT 59.217 42.308 0.00 0.00 32.57 3.01
2433 2494 7.624077 AGTTAGAAGTGGGATATAGACTTTGGT 59.376 37.037 0.00 0.00 30.01 3.67
2434 2495 6.487299 AGAAGTGGGATATAGACTTTGGTC 57.513 41.667 0.00 0.00 42.41 4.02
2459 2522 3.583086 ACACCATACTGAGTTACCAGCTT 59.417 43.478 0.00 0.00 37.68 3.74
2478 2541 4.459337 AGCTTGGTTGATACTTTTAGTGGC 59.541 41.667 0.00 0.00 0.00 5.01
2509 2572 7.565323 AGATGAAAGCCTTTTCTGATATGTC 57.435 36.000 0.00 0.00 42.56 3.06
2531 2594 4.833938 TCATGGGCATACGTAGGTATTACA 59.166 41.667 9.23 5.88 37.24 2.41
2532 2595 5.482526 TCATGGGCATACGTAGGTATTACAT 59.517 40.000 9.23 7.65 37.24 2.29
2533 2596 6.664384 TCATGGGCATACGTAGGTATTACATA 59.336 38.462 9.23 0.00 37.24 2.29
2579 2642 1.846007 TTGTGGGTTTGCTCACTTGT 58.154 45.000 0.00 0.00 46.03 3.16
2603 2666 4.156556 TCTGTGCTTTGCAATTCCATAGAC 59.843 41.667 0.00 0.00 41.47 2.59
3107 3371 7.009174 GCTTGTTTAATTGGGATATTGTTCACG 59.991 37.037 0.00 0.00 0.00 4.35
3284 3548 5.344743 TCAGAATTCAGAGTGGATGTACC 57.655 43.478 8.44 0.00 39.54 3.34
3285 3549 5.026121 TCAGAATTCAGAGTGGATGTACCT 58.974 41.667 8.44 0.00 39.86 3.08
3677 3943 2.280797 ATCAGCGCACACCGTTGT 60.281 55.556 11.47 0.00 46.51 3.32
3876 4142 2.826128 TCAGTCAAGCGATAGTGACCTT 59.174 45.455 2.02 0.00 44.30 3.50
3877 4143 2.926200 CAGTCAAGCGATAGTGACCTTG 59.074 50.000 2.02 0.00 44.30 3.61
3878 4144 2.093973 AGTCAAGCGATAGTGACCTTGG 60.094 50.000 2.02 0.00 44.30 3.61
3917 4184 6.947464 AGTAAGATACTTTTCTGCCTGCTTA 58.053 36.000 0.00 0.00 34.86 3.09
4020 4287 2.869233 TGAGTTCTGTTTTTGCTGCC 57.131 45.000 0.00 0.00 0.00 4.85
4180 4452 1.066716 TGCATAGCGGACGGTTAAAGT 60.067 47.619 0.55 0.00 0.00 2.66
4323 4646 1.128200 TAGCTATCCACGTGCCCAAT 58.872 50.000 10.91 3.22 0.00 3.16
4368 4691 0.670162 TTTGCTGCAACCTCAGAAGC 59.330 50.000 15.72 0.00 36.19 3.86
4609 4932 5.801350 AAATACGTTCATGTCATCCAGTG 57.199 39.130 0.00 0.00 0.00 3.66
4782 5105 7.359595 TGTGCTTAGTTACATGTTGATGTTTC 58.640 34.615 2.30 0.00 40.05 2.78
4892 5215 0.741221 GGGAACACTAGCGCTTGGAG 60.741 60.000 18.68 10.21 0.00 3.86
5263 5587 6.081356 TCTCCTTCCATTTGTACCCATTTTT 58.919 36.000 0.00 0.00 0.00 1.94
5304 5628 5.789643 ACAATTGTGTTTAGCCAATGTCT 57.210 34.783 11.07 0.00 32.58 3.41
5624 5949 9.474313 TTCCTGCCTTGTATATCTTTTGTTTAT 57.526 29.630 0.00 0.00 0.00 1.40
5751 6076 7.331026 TGATTCAGTTCCTGTACATTCCTTAG 58.669 38.462 0.00 0.00 32.61 2.18
5775 6100 4.097892 ACGTCTTGCATTTTTCCTTGTTCT 59.902 37.500 0.00 0.00 0.00 3.01
5796 6121 6.519679 TCTATTTGTTGAAGCAAGCATGAT 57.480 33.333 0.00 0.00 0.00 2.45
5985 6566 3.569194 TGAAGGTTAACTTGAGCCACA 57.431 42.857 5.42 0.00 40.21 4.17
6025 6606 0.322098 ATTCGGAACCGCCATCACAA 60.322 50.000 8.48 0.00 39.59 3.33
6347 6930 7.996758 AGAGAAAGGAATTAAGTATCTCCCA 57.003 36.000 0.00 0.00 33.92 4.37
6410 6993 5.075493 CCTAATCCCCTTCAATCCATTCTG 58.925 45.833 0.00 0.00 0.00 3.02
6430 7013 2.953648 TGTATTGCCATCTTCTGCATGG 59.046 45.455 0.00 0.00 43.47 3.66
6678 7261 3.007182 CCCATGCTGGAAATTCTTGTGTT 59.993 43.478 4.00 0.00 40.96 3.32
6730 7313 3.000727 CGTGGAGTCCAGGATTTGTAAC 58.999 50.000 24.66 2.65 41.36 2.50
6927 7585 5.568677 TGTGAAGAAAATTGAAATCATCGCG 59.431 36.000 0.00 0.00 0.00 5.87
6945 7603 1.671328 GCGTTAGGAGGATCAAAAGGC 59.329 52.381 0.00 0.00 35.88 4.35
6979 10713 3.181479 GGCACACTAGATCGGTACATTGA 60.181 47.826 0.00 0.00 0.00 2.57
7120 10992 8.664669 AACCATGACCATAAAGGAAATAGTTT 57.335 30.769 0.00 0.00 41.22 2.66
7466 11385 7.326789 TCAAGCGAATTAAATTTCTCTTTGCTG 59.673 33.333 16.64 12.72 36.82 4.41
7553 11472 8.389779 TGATGTTAAACAGAGAAAATGTAGCA 57.610 30.769 0.00 0.00 0.00 3.49
7567 11486 4.852134 ATGTAGCAAATGCAGTTGTGAA 57.148 36.364 25.91 10.66 45.16 3.18
7577 11496 1.883638 GCAGTTGTGAAGATCCAGCCA 60.884 52.381 0.00 0.00 0.00 4.75
7714 11633 2.025898 TGGGATAACGATCGCACAGTA 58.974 47.619 16.60 0.23 46.80 2.74
7968 11918 9.621629 TCGAAAAATCATGTATAACCCTGTATT 57.378 29.630 0.00 0.00 0.00 1.89
7977 11927 9.996554 CATGTATAACCCTGTATTATGTTCAGA 57.003 33.333 0.00 0.00 0.00 3.27
8167 12117 2.947652 GTGCCTGTATACTCGGTAGTCA 59.052 50.000 4.17 0.00 37.15 3.41
8422 12373 0.112995 TGGCAAAGCTGAACCCATCT 59.887 50.000 0.00 0.00 0.00 2.90
8442 12393 3.378427 TCTGTGACATATGACTCCGACAG 59.622 47.826 10.38 12.38 0.00 3.51
8613 12572 2.334838 ACCTTTTCGTGTGTATCGCTC 58.665 47.619 0.00 0.00 0.00 5.03
8642 12601 1.473497 TTGCCACGTACTGTAGGCCA 61.473 55.000 5.01 1.23 41.35 5.36
8701 12660 5.217978 TGGACTGTAAGGTTTATGTCGTT 57.782 39.130 0.00 0.00 39.30 3.85
8704 12663 6.869913 TGGACTGTAAGGTTTATGTCGTTTAG 59.130 38.462 0.00 0.00 39.30 1.85
8780 12739 4.503741 TGCTTACACCAAAGAAGATTGC 57.496 40.909 0.00 0.00 0.00 3.56
8801 12760 0.670546 ATCGTCTGGGTGTTCAAGCG 60.671 55.000 0.00 0.00 0.00 4.68
8817 12776 1.178276 AGCGTACTGGTGAAGAGGAG 58.822 55.000 0.00 0.00 0.00 3.69
8826 12785 6.002653 ACTGGTGAAGAGGAGTTTTTAAGT 57.997 37.500 0.00 0.00 0.00 2.24
8827 12786 6.056236 ACTGGTGAAGAGGAGTTTTTAAGTC 58.944 40.000 0.00 0.00 0.00 3.01
8836 12797 6.708054 AGAGGAGTTTTTAAGTCTCATGTGTG 59.292 38.462 0.00 0.00 0.00 3.82
8957 12945 5.229921 GTTGATGGAAGCAAGCGTAATTA 57.770 39.130 0.00 0.00 46.27 1.40
8959 12947 6.954944 GTTGATGGAAGCAAGCGTAATTATA 58.045 36.000 0.00 0.00 46.27 0.98
8995 12987 3.857052 TGGTCAATACCTGAATGTCGTC 58.143 45.455 0.00 0.00 46.91 4.20
9083 13075 9.603298 GCATTTTCCTCTTTTCATTTGAATTTC 57.397 29.630 0.00 0.00 33.54 2.17
9112 13104 8.610896 CAAACTGCCAAATTTAAATTCACAGAA 58.389 29.630 27.45 10.31 31.95 3.02
9124 13116 9.936759 TTTAAATTCACAGAAAGACAAGGTTTT 57.063 25.926 0.00 0.00 0.00 2.43
9125 13117 9.581099 TTAAATTCACAGAAAGACAAGGTTTTC 57.419 29.630 0.00 0.00 34.34 2.29
9126 13118 5.576447 TTCACAGAAAGACAAGGTTTTCC 57.424 39.130 0.00 0.00 34.60 3.13
9127 13119 3.625764 TCACAGAAAGACAAGGTTTTCCG 59.374 43.478 0.00 0.00 46.35 4.30
9128 13120 3.625764 CACAGAAAGACAAGGTTTTCCGA 59.374 43.478 0.00 0.00 46.35 4.55
9129 13121 3.877508 ACAGAAAGACAAGGTTTTCCGAG 59.122 43.478 0.00 0.00 46.35 4.63
9130 13122 4.127171 CAGAAAGACAAGGTTTTCCGAGA 58.873 43.478 0.00 0.00 46.35 4.04
9131 13123 4.212214 CAGAAAGACAAGGTTTTCCGAGAG 59.788 45.833 0.00 0.00 46.35 3.20
9132 13124 4.101119 AGAAAGACAAGGTTTTCCGAGAGA 59.899 41.667 0.00 0.00 46.35 3.10
9133 13125 4.417426 AAGACAAGGTTTTCCGAGAGAA 57.583 40.909 0.00 0.00 46.35 2.87
9134 13126 3.729966 AGACAAGGTTTTCCGAGAGAAC 58.270 45.455 0.00 0.00 46.35 3.01
9135 13127 2.806818 GACAAGGTTTTCCGAGAGAACC 59.193 50.000 14.55 14.55 46.35 3.62
9136 13128 2.438392 ACAAGGTTTTCCGAGAGAACCT 59.562 45.455 17.53 17.53 46.35 3.50
9137 13129 3.118000 ACAAGGTTTTCCGAGAGAACCTT 60.118 43.478 23.79 23.79 46.35 3.50
9138 13130 3.127425 AGGTTTTCCGAGAGAACCTTG 57.873 47.619 17.53 0.00 46.35 3.61
9139 13131 2.438392 AGGTTTTCCGAGAGAACCTTGT 59.562 45.455 17.53 3.31 46.35 3.16
9140 13132 3.644738 AGGTTTTCCGAGAGAACCTTGTA 59.355 43.478 17.53 0.00 46.35 2.41
9141 13133 3.744942 GGTTTTCCGAGAGAACCTTGTAC 59.255 47.826 14.90 0.00 32.95 2.90
9142 13134 4.502777 GGTTTTCCGAGAGAACCTTGTACT 60.503 45.833 14.90 0.00 32.95 2.73
9143 13135 5.279156 GGTTTTCCGAGAGAACCTTGTACTA 60.279 44.000 14.90 0.00 32.95 1.82
9144 13136 6.218746 GTTTTCCGAGAGAACCTTGTACTAA 58.781 40.000 0.00 0.00 32.95 2.24
9145 13137 5.640189 TTCCGAGAGAACCTTGTACTAAG 57.360 43.478 0.00 0.00 0.00 2.18
9146 13138 4.914983 TCCGAGAGAACCTTGTACTAAGA 58.085 43.478 0.00 0.00 0.00 2.10
9147 13139 5.507637 TCCGAGAGAACCTTGTACTAAGAT 58.492 41.667 0.00 0.00 0.00 2.40
9148 13140 6.656902 TCCGAGAGAACCTTGTACTAAGATA 58.343 40.000 0.00 0.00 0.00 1.98
9149 13141 7.114754 TCCGAGAGAACCTTGTACTAAGATAA 58.885 38.462 0.00 0.00 0.00 1.75
9150 13142 7.282675 TCCGAGAGAACCTTGTACTAAGATAAG 59.717 40.741 0.00 0.00 0.00 1.73
9151 13143 7.282675 CCGAGAGAACCTTGTACTAAGATAAGA 59.717 40.741 0.00 0.00 0.00 2.10
9152 13144 8.339714 CGAGAGAACCTTGTACTAAGATAAGAG 58.660 40.741 0.00 0.00 0.00 2.85
9153 13145 9.181061 GAGAGAACCTTGTACTAAGATAAGAGT 57.819 37.037 0.00 0.00 0.00 3.24
9154 13146 9.536510 AGAGAACCTTGTACTAAGATAAGAGTT 57.463 33.333 0.00 0.00 0.00 3.01
9155 13147 9.575783 GAGAACCTTGTACTAAGATAAGAGTTG 57.424 37.037 0.00 0.00 0.00 3.16
9156 13148 8.532819 AGAACCTTGTACTAAGATAAGAGTTGG 58.467 37.037 0.00 0.00 0.00 3.77
9157 13149 6.641474 ACCTTGTACTAAGATAAGAGTTGGC 58.359 40.000 0.00 0.00 0.00 4.52
9158 13150 6.049790 CCTTGTACTAAGATAAGAGTTGGCC 58.950 44.000 0.00 0.00 0.00 5.36
9159 13151 6.351881 CCTTGTACTAAGATAAGAGTTGGCCA 60.352 42.308 0.00 0.00 0.00 5.36
9160 13152 6.808321 TGTACTAAGATAAGAGTTGGCCAT 57.192 37.500 6.09 0.00 0.00 4.40
9161 13153 7.195374 TGTACTAAGATAAGAGTTGGCCATT 57.805 36.000 6.09 0.00 0.00 3.16
9162 13154 7.047891 TGTACTAAGATAAGAGTTGGCCATTG 58.952 38.462 6.09 0.00 0.00 2.82
9163 13155 6.313519 ACTAAGATAAGAGTTGGCCATTGA 57.686 37.500 6.09 0.00 0.00 2.57
9164 13156 6.904626 ACTAAGATAAGAGTTGGCCATTGAT 58.095 36.000 6.09 0.00 0.00 2.57
9165 13157 8.034313 ACTAAGATAAGAGTTGGCCATTGATA 57.966 34.615 6.09 0.00 0.00 2.15
9166 13158 8.664079 ACTAAGATAAGAGTTGGCCATTGATAT 58.336 33.333 6.09 2.04 0.00 1.63
9169 13161 9.458727 AAGATAAGAGTTGGCCATTGATATATG 57.541 33.333 6.09 0.00 0.00 1.78
9170 13162 8.051535 AGATAAGAGTTGGCCATTGATATATGG 58.948 37.037 6.09 0.66 46.46 2.74
9171 13163 5.589367 AGAGTTGGCCATTGATATATGGT 57.411 39.130 6.09 0.00 45.65 3.55
9172 13164 6.702449 AGAGTTGGCCATTGATATATGGTA 57.298 37.500 6.09 0.00 45.65 3.25
9173 13165 7.276088 AGAGTTGGCCATTGATATATGGTAT 57.724 36.000 6.09 0.00 45.65 2.73
9174 13166 8.392631 AGAGTTGGCCATTGATATATGGTATA 57.607 34.615 6.09 0.00 45.65 1.47
9175 13167 8.835734 AGAGTTGGCCATTGATATATGGTATAA 58.164 33.333 6.09 0.00 45.65 0.98
9176 13168 9.461312 GAGTTGGCCATTGATATATGGTATAAA 57.539 33.333 6.09 0.00 45.65 1.40
9177 13169 9.243105 AGTTGGCCATTGATATATGGTATAAAC 57.757 33.333 6.09 0.00 45.65 2.01
9178 13170 9.019656 GTTGGCCATTGATATATGGTATAAACA 57.980 33.333 6.09 0.00 45.65 2.83
9179 13171 9.766754 TTGGCCATTGATATATGGTATAAACAT 57.233 29.630 6.09 0.00 45.65 2.71
9194 13186 9.976776 TGGTATAAACATAACCACCTTAATGAA 57.023 29.630 0.00 0.00 38.36 2.57
9202 13194 9.747898 ACATAACCACCTTAATGAATTAACTGA 57.252 29.630 0.00 0.00 0.00 3.41
9204 13196 9.975218 ATAACCACCTTAATGAATTAACTGACT 57.025 29.630 0.00 0.00 0.00 3.41
9205 13197 8.706322 AACCACCTTAATGAATTAACTGACTT 57.294 30.769 0.00 0.00 0.00 3.01
9206 13198 8.110860 ACCACCTTAATGAATTAACTGACTTG 57.889 34.615 0.00 0.00 0.00 3.16
9207 13199 7.724061 ACCACCTTAATGAATTAACTGACTTGT 59.276 33.333 0.00 0.00 0.00 3.16
9208 13200 8.576442 CCACCTTAATGAATTAACTGACTTGTT 58.424 33.333 0.00 0.00 0.00 2.83
9209 13201 9.965824 CACCTTAATGAATTAACTGACTTGTTT 57.034 29.630 0.00 0.00 0.00 2.83
9263 13255 8.081633 TCTAAAATTTGACCTGTTAGCAACATG 58.918 33.333 0.00 0.00 41.26 3.21
9264 13256 3.641437 TTTGACCTGTTAGCAACATGC 57.359 42.857 0.00 0.00 45.46 4.06
9275 13267 2.330231 GCAACATGCACACGTGTATT 57.670 45.000 22.90 6.11 45.43 1.89
9303 13295 3.896648 ATGCGGCATAAATTTAGACGG 57.103 42.857 14.96 11.69 0.00 4.79
9312 13304 1.663695 AATTTAGACGGCCACGATGG 58.336 50.000 2.24 0.00 44.60 3.51
9391 13778 5.838521 GGAGGAAGAGGAGTCTGAAGATATT 59.161 44.000 0.00 0.00 31.37 1.28
9441 13834 4.449743 GTGCCAACACGTAACTGAAGATAA 59.550 41.667 0.00 0.00 36.98 1.75
9446 13839 3.918591 ACACGTAACTGAAGATAAGTGCG 59.081 43.478 11.60 0.00 36.69 5.34
9515 13909 2.994417 TGAACCGGGCATTTGGGC 60.994 61.111 6.32 0.00 42.44 5.36
9531 13925 4.371624 TTGGGCAGATGATATTACCCTG 57.628 45.455 0.00 0.00 38.23 4.45
9532 13926 3.597182 TGGGCAGATGATATTACCCTGA 58.403 45.455 0.00 0.00 38.23 3.86
9533 13927 4.178339 TGGGCAGATGATATTACCCTGAT 58.822 43.478 0.00 0.00 38.23 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.634702 CTAAACAGAGGAGTGCGAGC 58.365 55.000 0.00 0.00 0.00 5.03
1 2 1.634702 GCTAAACAGAGGAGTGCGAG 58.365 55.000 0.00 0.00 0.00 5.03
2 3 0.109272 CGCTAAACAGAGGAGTGCGA 60.109 55.000 0.00 0.00 43.81 5.10
3 4 0.388649 ACGCTAAACAGAGGAGTGCG 60.389 55.000 0.00 0.00 46.02 5.34
4 5 1.071605 CACGCTAAACAGAGGAGTGC 58.928 55.000 0.00 0.00 0.00 4.40
5 6 1.673033 CCCACGCTAAACAGAGGAGTG 60.673 57.143 0.00 0.00 0.00 3.51
6 7 0.608640 CCCACGCTAAACAGAGGAGT 59.391 55.000 0.00 0.00 0.00 3.85
7 8 0.108138 CCCCACGCTAAACAGAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
8 9 1.550130 CCCCCACGCTAAACAGAGGA 61.550 60.000 0.00 0.00 0.00 3.71
9 10 1.078426 CCCCCACGCTAAACAGAGG 60.078 63.158 0.00 0.00 0.00 3.69
10 11 4.617875 CCCCCACGCTAAACAGAG 57.382 61.111 0.00 0.00 0.00 3.35
26 27 1.690985 CTCCCCTGTTCTCTCCCCC 60.691 68.421 0.00 0.00 0.00 5.40
27 28 0.030603 ATCTCCCCTGTTCTCTCCCC 60.031 60.000 0.00 0.00 0.00 4.81
28 29 1.419381 GATCTCCCCTGTTCTCTCCC 58.581 60.000 0.00 0.00 0.00 4.30
29 30 1.036707 CGATCTCCCCTGTTCTCTCC 58.963 60.000 0.00 0.00 0.00 3.71
30 31 1.953686 CTCGATCTCCCCTGTTCTCTC 59.046 57.143 0.00 0.00 0.00 3.20
31 32 1.566703 TCTCGATCTCCCCTGTTCTCT 59.433 52.381 0.00 0.00 0.00 3.10
32 33 1.679153 GTCTCGATCTCCCCTGTTCTC 59.321 57.143 0.00 0.00 0.00 2.87
33 34 1.770294 GTCTCGATCTCCCCTGTTCT 58.230 55.000 0.00 0.00 0.00 3.01
34 35 0.382515 CGTCTCGATCTCCCCTGTTC 59.617 60.000 0.00 0.00 0.00 3.18
35 36 0.034380 TCGTCTCGATCTCCCCTGTT 60.034 55.000 0.00 0.00 0.00 3.16
36 37 0.464735 CTCGTCTCGATCTCCCCTGT 60.465 60.000 0.00 0.00 34.61 4.00
37 38 0.179043 TCTCGTCTCGATCTCCCCTG 60.179 60.000 0.00 0.00 34.61 4.45
38 39 0.547075 TTCTCGTCTCGATCTCCCCT 59.453 55.000 0.00 0.00 34.61 4.79
39 40 0.664224 GTTCTCGTCTCGATCTCCCC 59.336 60.000 0.00 0.00 34.61 4.81
40 41 1.332375 CTGTTCTCGTCTCGATCTCCC 59.668 57.143 0.00 0.00 34.61 4.30
41 42 1.332375 CCTGTTCTCGTCTCGATCTCC 59.668 57.143 0.00 0.00 34.61 3.71
42 43 1.332375 CCCTGTTCTCGTCTCGATCTC 59.668 57.143 0.00 0.00 34.61 2.75
43 44 1.384525 CCCTGTTCTCGTCTCGATCT 58.615 55.000 0.00 0.00 34.61 2.75
44 45 0.382515 CCCCTGTTCTCGTCTCGATC 59.617 60.000 0.00 0.00 34.61 3.69
45 46 1.038130 CCCCCTGTTCTCGTCTCGAT 61.038 60.000 0.00 0.00 34.61 3.59
46 47 1.677966 CCCCCTGTTCTCGTCTCGA 60.678 63.158 0.00 0.00 0.00 4.04
47 48 2.885861 CCCCCTGTTCTCGTCTCG 59.114 66.667 0.00 0.00 0.00 4.04
48 49 1.827399 TTGCCCCCTGTTCTCGTCTC 61.827 60.000 0.00 0.00 0.00 3.36
49 50 1.201429 ATTGCCCCCTGTTCTCGTCT 61.201 55.000 0.00 0.00 0.00 4.18
50 51 0.322546 AATTGCCCCCTGTTCTCGTC 60.323 55.000 0.00 0.00 0.00 4.20
51 52 0.112412 AAATTGCCCCCTGTTCTCGT 59.888 50.000 0.00 0.00 0.00 4.18
52 53 0.527565 CAAATTGCCCCCTGTTCTCG 59.472 55.000 0.00 0.00 0.00 4.04
53 54 0.247460 GCAAATTGCCCCCTGTTCTC 59.753 55.000 6.72 0.00 37.42 2.87
54 55 1.535204 CGCAAATTGCCCCCTGTTCT 61.535 55.000 12.80 0.00 41.12 3.01
55 56 1.079888 CGCAAATTGCCCCCTGTTC 60.080 57.895 12.80 0.00 41.12 3.18
56 57 1.118356 TTCGCAAATTGCCCCCTGTT 61.118 50.000 12.80 0.00 41.12 3.16
57 58 1.118356 TTTCGCAAATTGCCCCCTGT 61.118 50.000 12.80 0.00 41.12 4.00
58 59 0.249955 ATTTCGCAAATTGCCCCCTG 59.750 50.000 12.80 0.00 41.12 4.45
59 60 1.859302 TATTTCGCAAATTGCCCCCT 58.141 45.000 12.80 0.00 41.12 4.79
60 61 2.276201 GTTATTTCGCAAATTGCCCCC 58.724 47.619 12.80 0.00 41.12 5.40
61 62 2.929398 CTGTTATTTCGCAAATTGCCCC 59.071 45.455 12.80 0.00 41.12 5.80
62 63 2.929398 CCTGTTATTTCGCAAATTGCCC 59.071 45.455 12.80 0.00 41.12 5.36
63 64 3.367630 CACCTGTTATTTCGCAAATTGCC 59.632 43.478 12.80 0.00 41.12 4.52
64 65 3.367630 CCACCTGTTATTTCGCAAATTGC 59.632 43.478 8.09 8.09 40.69 3.56
65 66 3.925913 CCCACCTGTTATTTCGCAAATTG 59.074 43.478 0.00 0.00 32.38 2.32
66 67 3.056179 CCCCACCTGTTATTTCGCAAATT 60.056 43.478 0.52 0.00 32.38 1.82
67 68 2.495669 CCCCACCTGTTATTTCGCAAAT 59.504 45.455 0.00 0.00 34.90 2.32
68 69 1.889829 CCCCACCTGTTATTTCGCAAA 59.110 47.619 0.00 0.00 0.00 3.68
69 70 1.540267 CCCCACCTGTTATTTCGCAA 58.460 50.000 0.00 0.00 0.00 4.85
70 71 0.963355 GCCCCACCTGTTATTTCGCA 60.963 55.000 0.00 0.00 0.00 5.10
71 72 0.679960 AGCCCCACCTGTTATTTCGC 60.680 55.000 0.00 0.00 0.00 4.70
72 73 2.169769 TCTAGCCCCACCTGTTATTTCG 59.830 50.000 0.00 0.00 0.00 3.46
73 74 3.809905 CTCTAGCCCCACCTGTTATTTC 58.190 50.000 0.00 0.00 0.00 2.17
74 75 2.092375 GCTCTAGCCCCACCTGTTATTT 60.092 50.000 0.00 0.00 34.31 1.40
75 76 1.490910 GCTCTAGCCCCACCTGTTATT 59.509 52.381 0.00 0.00 34.31 1.40
76 77 1.132500 GCTCTAGCCCCACCTGTTAT 58.868 55.000 0.00 0.00 34.31 1.89
77 78 0.042731 AGCTCTAGCCCCACCTGTTA 59.957 55.000 0.00 0.00 43.38 2.41
78 79 1.229658 AGCTCTAGCCCCACCTGTT 60.230 57.895 0.00 0.00 43.38 3.16
79 80 1.992277 CAGCTCTAGCCCCACCTGT 60.992 63.158 0.00 0.00 43.38 4.00
80 81 1.687146 TCAGCTCTAGCCCCACCTG 60.687 63.158 0.00 0.00 43.38 4.00
81 82 1.687493 GTCAGCTCTAGCCCCACCT 60.687 63.158 0.00 0.00 43.38 4.00
82 83 1.687493 AGTCAGCTCTAGCCCCACC 60.687 63.158 0.00 0.00 43.38 4.61
83 84 1.519719 CAGTCAGCTCTAGCCCCAC 59.480 63.158 0.00 0.00 43.38 4.61
84 85 1.687146 CCAGTCAGCTCTAGCCCCA 60.687 63.158 0.00 0.00 43.38 4.96
85 86 1.687493 ACCAGTCAGCTCTAGCCCC 60.687 63.158 0.00 0.00 43.38 5.80
86 87 1.519719 CACCAGTCAGCTCTAGCCC 59.480 63.158 0.00 0.00 43.38 5.19
87 88 1.519719 CCACCAGTCAGCTCTAGCC 59.480 63.158 0.00 0.00 43.38 3.93
88 89 1.261238 ACCCACCAGTCAGCTCTAGC 61.261 60.000 0.00 0.00 42.49 3.42
89 90 0.820871 GACCCACCAGTCAGCTCTAG 59.179 60.000 0.00 0.00 36.73 2.43
90 91 0.614979 GGACCCACCAGTCAGCTCTA 60.615 60.000 0.00 0.00 38.59 2.43
91 92 1.915769 GGACCCACCAGTCAGCTCT 60.916 63.158 0.00 0.00 38.59 4.09
92 93 2.665603 GGACCCACCAGTCAGCTC 59.334 66.667 0.00 0.00 38.59 4.09
93 94 3.314331 CGGACCCACCAGTCAGCT 61.314 66.667 0.00 0.00 38.59 4.24
94 95 3.302347 CTCGGACCCACCAGTCAGC 62.302 68.421 0.00 0.00 38.59 4.26
95 96 2.973899 CTCGGACCCACCAGTCAG 59.026 66.667 0.00 0.00 38.59 3.51
96 97 3.311110 GCTCGGACCCACCAGTCA 61.311 66.667 0.00 0.00 38.59 3.41
97 98 2.997897 AGCTCGGACCCACCAGTC 60.998 66.667 0.00 0.00 38.90 3.51
98 99 3.314331 CAGCTCGGACCCACCAGT 61.314 66.667 0.00 0.00 38.90 4.00
99 100 2.997315 TCAGCTCGGACCCACCAG 60.997 66.667 0.00 0.00 38.90 4.00
100 101 3.311110 GTCAGCTCGGACCCACCA 61.311 66.667 0.00 0.00 38.90 4.17
101 102 2.997897 AGTCAGCTCGGACCCACC 60.998 66.667 0.75 0.00 38.59 4.61
102 103 2.262915 CAGTCAGCTCGGACCCAC 59.737 66.667 0.75 0.00 38.59 4.61
103 104 2.997315 CCAGTCAGCTCGGACCCA 60.997 66.667 0.75 0.00 38.59 4.51
104 105 2.997897 ACCAGTCAGCTCGGACCC 60.998 66.667 0.75 0.00 38.59 4.46
105 106 2.262915 CACCAGTCAGCTCGGACC 59.737 66.667 0.75 0.00 38.59 4.46
106 107 2.262915 CCACCAGTCAGCTCGGAC 59.737 66.667 0.00 0.00 38.08 4.79
107 108 2.997315 CCCACCAGTCAGCTCGGA 60.997 66.667 0.00 0.00 0.00 4.55
108 109 3.302347 GACCCACCAGTCAGCTCGG 62.302 68.421 0.00 0.00 36.73 4.63
109 110 2.262915 GACCCACCAGTCAGCTCG 59.737 66.667 0.00 0.00 36.73 5.03
110 111 2.665603 GGACCCACCAGTCAGCTC 59.334 66.667 0.00 0.00 38.59 4.09
111 112 2.930562 GGGACCCACCAGTCAGCT 60.931 66.667 5.33 0.00 41.20 4.24
112 113 4.394712 CGGGACCCACCAGTCAGC 62.395 72.222 12.15 0.00 41.20 4.26
113 114 3.706373 CCGGGACCCACCAGTCAG 61.706 72.222 12.15 0.00 41.20 3.51
127 128 4.155733 TATGCCACGTCAGCCCGG 62.156 66.667 0.00 0.00 0.00 5.73
128 129 2.890474 GTATGCCACGTCAGCCCG 60.890 66.667 4.72 0.00 0.00 6.13
129 130 1.815421 CTGTATGCCACGTCAGCCC 60.815 63.158 4.72 0.00 0.00 5.19
130 131 2.464459 GCTGTATGCCACGTCAGCC 61.464 63.158 12.32 0.00 44.84 4.85
131 132 2.802667 CGCTGTATGCCACGTCAGC 61.803 63.158 13.11 13.11 46.38 4.26
132 133 2.167219 CCGCTGTATGCCACGTCAG 61.167 63.158 0.00 0.00 38.78 3.51
133 134 2.125713 CCGCTGTATGCCACGTCA 60.126 61.111 0.00 0.00 38.78 4.35
134 135 1.878522 CTCCGCTGTATGCCACGTC 60.879 63.158 0.00 0.00 38.78 4.34
135 136 1.317431 TACTCCGCTGTATGCCACGT 61.317 55.000 0.00 0.00 38.78 4.49
136 137 0.870307 GTACTCCGCTGTATGCCACG 60.870 60.000 0.00 0.00 38.78 4.94
137 138 0.870307 CGTACTCCGCTGTATGCCAC 60.870 60.000 0.00 0.00 38.78 5.01
138 139 1.435925 CGTACTCCGCTGTATGCCA 59.564 57.895 0.00 0.00 38.78 4.92
139 140 1.299926 CCGTACTCCGCTGTATGCC 60.300 63.158 0.00 0.00 38.78 4.40
140 141 0.870307 CACCGTACTCCGCTGTATGC 60.870 60.000 0.00 0.00 38.57 3.14
141 142 0.454600 ACACCGTACTCCGCTGTATG 59.545 55.000 0.00 0.00 33.72 2.39
142 143 1.672881 GTACACCGTACTCCGCTGTAT 59.327 52.381 0.00 0.00 39.19 2.29
143 144 1.086696 GTACACCGTACTCCGCTGTA 58.913 55.000 0.00 0.00 36.74 2.74
144 145 1.878775 GTACACCGTACTCCGCTGT 59.121 57.895 0.00 0.00 38.78 4.40
145 146 1.226211 CGTACACCGTACTCCGCTG 60.226 63.158 3.06 0.00 34.38 5.18
146 147 3.181367 CGTACACCGTACTCCGCT 58.819 61.111 3.06 0.00 34.38 5.52
155 156 3.455195 CGTGCACGACGTACACCG 61.455 66.667 34.93 14.74 43.50 4.94
163 164 2.087009 GGCTCTACACGTGCACGAC 61.087 63.158 42.94 21.54 43.02 4.34
164 165 2.257371 GGCTCTACACGTGCACGA 59.743 61.111 42.94 21.93 43.02 4.35
165 166 2.049526 TGGCTCTACACGTGCACG 60.050 61.111 35.99 35.99 46.33 5.34
166 167 1.738099 CCTGGCTCTACACGTGCAC 60.738 63.158 17.22 6.82 33.89 4.57
167 168 1.906333 TCCTGGCTCTACACGTGCA 60.906 57.895 17.22 0.49 33.89 4.57
168 169 1.446272 GTCCTGGCTCTACACGTGC 60.446 63.158 17.22 0.00 0.00 5.34
169 170 0.109086 CAGTCCTGGCTCTACACGTG 60.109 60.000 15.48 15.48 0.00 4.49
170 171 1.251527 CCAGTCCTGGCTCTACACGT 61.252 60.000 0.00 0.00 44.73 4.49
171 172 1.513158 CCAGTCCTGGCTCTACACG 59.487 63.158 0.00 0.00 44.73 4.49
181 182 0.886490 AGCTTGAAACGCCAGTCCTG 60.886 55.000 0.00 0.00 0.00 3.86
182 183 0.603975 GAGCTTGAAACGCCAGTCCT 60.604 55.000 0.00 0.00 0.00 3.85
183 184 0.884704 TGAGCTTGAAACGCCAGTCC 60.885 55.000 0.00 0.00 0.00 3.85
184 185 0.514691 CTGAGCTTGAAACGCCAGTC 59.485 55.000 0.00 0.00 0.00 3.51
185 186 0.886490 CCTGAGCTTGAAACGCCAGT 60.886 55.000 0.00 0.00 0.00 4.00
186 187 1.580845 CCCTGAGCTTGAAACGCCAG 61.581 60.000 0.00 0.00 0.00 4.85
187 188 1.600636 CCCTGAGCTTGAAACGCCA 60.601 57.895 0.00 0.00 0.00 5.69
188 189 1.302511 TCCCTGAGCTTGAAACGCC 60.303 57.895 0.00 0.00 0.00 5.68
189 190 1.578206 GGTCCCTGAGCTTGAAACGC 61.578 60.000 0.00 0.00 0.00 4.84
190 191 1.291877 CGGTCCCTGAGCTTGAAACG 61.292 60.000 0.00 0.00 0.00 3.60
191 192 0.250338 ACGGTCCCTGAGCTTGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
192 193 1.344065 TACGGTCCCTGAGCTTGAAA 58.656 50.000 0.00 0.00 0.00 2.69
193 194 1.568504 ATACGGTCCCTGAGCTTGAA 58.431 50.000 0.00 0.00 0.00 2.69
194 195 1.207089 CAATACGGTCCCTGAGCTTGA 59.793 52.381 0.00 0.00 0.00 3.02
195 196 1.207089 TCAATACGGTCCCTGAGCTTG 59.793 52.381 0.00 0.00 0.00 4.01
196 197 1.207329 GTCAATACGGTCCCTGAGCTT 59.793 52.381 0.00 0.00 0.00 3.74
197 198 0.824759 GTCAATACGGTCCCTGAGCT 59.175 55.000 0.00 0.00 0.00 4.09
198 199 0.527817 CGTCAATACGGTCCCTGAGC 60.528 60.000 0.00 0.00 45.50 4.26
199 200 3.642901 CGTCAATACGGTCCCTGAG 57.357 57.895 0.00 0.00 45.50 3.35
209 210 7.332530 GGTACATGAAAATACGTCGTCAATAC 58.667 38.462 0.00 1.38 0.00 1.89
210 211 6.196910 CGGTACATGAAAATACGTCGTCAATA 59.803 38.462 0.00 0.00 0.00 1.90
211 212 5.005012 CGGTACATGAAAATACGTCGTCAAT 59.995 40.000 0.00 0.00 0.00 2.57
212 213 4.324135 CGGTACATGAAAATACGTCGTCAA 59.676 41.667 0.00 0.00 0.00 3.18
213 214 3.853103 CGGTACATGAAAATACGTCGTCA 59.147 43.478 0.00 0.00 0.00 4.35
214 215 3.241322 CCGGTACATGAAAATACGTCGTC 59.759 47.826 0.00 0.00 0.00 4.20
215 216 3.181397 CCGGTACATGAAAATACGTCGT 58.819 45.455 2.21 2.21 0.00 4.34
216 217 2.536803 CCCGGTACATGAAAATACGTCG 59.463 50.000 0.00 0.00 0.00 5.12
217 218 3.553105 GTCCCGGTACATGAAAATACGTC 59.447 47.826 0.00 0.00 0.00 4.34
218 219 3.524541 GTCCCGGTACATGAAAATACGT 58.475 45.455 0.00 0.00 0.00 3.57
219 220 2.867975 GGTCCCGGTACATGAAAATACG 59.132 50.000 0.00 0.00 0.00 3.06
220 221 2.867975 CGGTCCCGGTACATGAAAATAC 59.132 50.000 0.00 0.00 35.56 1.89
221 222 2.500910 ACGGTCCCGGTACATGAAAATA 59.499 45.455 10.91 0.00 44.69 1.40
222 223 1.279846 ACGGTCCCGGTACATGAAAAT 59.720 47.619 10.91 0.00 44.69 1.82
223 224 0.686224 ACGGTCCCGGTACATGAAAA 59.314 50.000 10.91 0.00 44.69 2.29
224 225 1.554836 TACGGTCCCGGTACATGAAA 58.445 50.000 10.91 0.00 44.69 2.69
225 226 1.682854 GATACGGTCCCGGTACATGAA 59.317 52.381 10.91 0.00 44.69 2.57
226 227 1.321474 GATACGGTCCCGGTACATGA 58.679 55.000 10.91 0.00 44.69 3.07
227 228 0.039798 CGATACGGTCCCGGTACATG 60.040 60.000 10.91 0.00 44.69 3.21
228 229 0.179020 TCGATACGGTCCCGGTACAT 60.179 55.000 10.91 0.00 44.69 2.29
229 230 0.179020 ATCGATACGGTCCCGGTACA 60.179 55.000 10.91 0.00 44.69 2.90
230 231 0.239347 CATCGATACGGTCCCGGTAC 59.761 60.000 10.91 0.00 44.69 3.34
231 232 1.518056 GCATCGATACGGTCCCGGTA 61.518 60.000 10.91 1.00 44.69 4.02
232 233 2.853290 GCATCGATACGGTCCCGGT 61.853 63.158 10.91 0.00 44.69 5.28
233 234 2.049433 GCATCGATACGGTCCCGG 60.049 66.667 10.91 0.00 44.69 5.73
234 235 0.319555 ATTGCATCGATACGGTCCCG 60.320 55.000 3.76 3.76 46.03 5.14
235 236 2.334838 GTATTGCATCGATACGGTCCC 58.665 52.381 0.00 0.00 0.00 4.46
236 237 1.983605 CGTATTGCATCGATACGGTCC 59.016 52.381 17.69 0.00 45.25 4.46
249 250 1.587034 GTCCTCGTACTTGCGTATTGC 59.413 52.381 0.00 0.00 46.70 3.56
250 251 2.852413 CAGTCCTCGTACTTGCGTATTG 59.148 50.000 0.00 0.00 0.00 1.90
251 252 2.751259 TCAGTCCTCGTACTTGCGTATT 59.249 45.455 0.00 0.00 0.00 1.89
252 253 2.362736 TCAGTCCTCGTACTTGCGTAT 58.637 47.619 0.00 0.00 0.00 3.06
253 254 1.812235 TCAGTCCTCGTACTTGCGTA 58.188 50.000 0.00 0.00 0.00 4.42
254 255 0.956633 TTCAGTCCTCGTACTTGCGT 59.043 50.000 0.00 0.00 0.00 5.24
255 256 1.068472 ACTTCAGTCCTCGTACTTGCG 60.068 52.381 0.00 0.00 0.00 4.85
256 257 2.329379 CACTTCAGTCCTCGTACTTGC 58.671 52.381 0.00 0.00 0.00 4.01
257 258 2.557056 TCCACTTCAGTCCTCGTACTTG 59.443 50.000 0.00 0.00 0.00 3.16
258 259 2.557490 GTCCACTTCAGTCCTCGTACTT 59.443 50.000 0.00 0.00 0.00 2.24
259 260 2.161030 GTCCACTTCAGTCCTCGTACT 58.839 52.381 0.00 0.00 0.00 2.73
260 261 1.135746 CGTCCACTTCAGTCCTCGTAC 60.136 57.143 0.00 0.00 0.00 3.67
261 262 1.162698 CGTCCACTTCAGTCCTCGTA 58.837 55.000 0.00 0.00 0.00 3.43
262 263 0.822532 ACGTCCACTTCAGTCCTCGT 60.823 55.000 0.00 0.00 0.00 4.18
263 264 1.130749 CTACGTCCACTTCAGTCCTCG 59.869 57.143 0.00 0.00 0.00 4.63
264 265 1.135344 GCTACGTCCACTTCAGTCCTC 60.135 57.143 0.00 0.00 0.00 3.71
265 266 0.889306 GCTACGTCCACTTCAGTCCT 59.111 55.000 0.00 0.00 0.00 3.85
266 267 0.108756 GGCTACGTCCACTTCAGTCC 60.109 60.000 0.00 0.00 0.00 3.85
267 268 0.601558 TGGCTACGTCCACTTCAGTC 59.398 55.000 0.00 0.00 0.00 3.51
268 269 0.603569 CTGGCTACGTCCACTTCAGT 59.396 55.000 0.00 0.00 31.74 3.41
269 270 0.737715 GCTGGCTACGTCCACTTCAG 60.738 60.000 0.00 0.00 31.74 3.02
270 271 1.292223 GCTGGCTACGTCCACTTCA 59.708 57.895 0.00 0.00 31.74 3.02
271 272 1.805945 CGCTGGCTACGTCCACTTC 60.806 63.158 0.00 0.00 31.74 3.01
272 273 2.214181 CTCGCTGGCTACGTCCACTT 62.214 60.000 0.00 0.00 31.74 3.16
273 274 2.675423 TCGCTGGCTACGTCCACT 60.675 61.111 0.00 0.00 31.74 4.00
274 275 1.651240 TACTCGCTGGCTACGTCCAC 61.651 60.000 0.00 0.00 31.74 4.02
275 276 1.377594 TACTCGCTGGCTACGTCCA 60.378 57.895 0.00 0.00 34.42 4.02
276 277 1.063811 GTACTCGCTGGCTACGTCC 59.936 63.158 0.00 0.00 0.00 4.79
277 278 1.297451 CGTACTCGCTGGCTACGTC 60.297 63.158 0.00 0.00 0.00 4.34
278 279 1.703438 CTCGTACTCGCTGGCTACGT 61.703 60.000 10.84 0.00 35.75 3.57
279 280 1.011019 CTCGTACTCGCTGGCTACG 60.011 63.158 6.55 6.55 35.62 3.51
280 281 1.094073 TCCTCGTACTCGCTGGCTAC 61.094 60.000 0.00 0.00 36.96 3.58
281 282 1.094073 GTCCTCGTACTCGCTGGCTA 61.094 60.000 0.00 0.00 36.96 3.93
282 283 2.045242 TCCTCGTACTCGCTGGCT 60.045 61.111 0.00 0.00 36.96 4.75
283 284 1.094073 TAGTCCTCGTACTCGCTGGC 61.094 60.000 0.00 0.00 36.96 4.85
284 285 1.595466 ATAGTCCTCGTACTCGCTGG 58.405 55.000 0.00 0.00 36.96 4.85
285 286 3.651206 TCTATAGTCCTCGTACTCGCTG 58.349 50.000 0.00 0.00 36.96 5.18
286 287 4.247258 CATCTATAGTCCTCGTACTCGCT 58.753 47.826 0.00 0.00 36.96 4.93
287 288 3.181518 GCATCTATAGTCCTCGTACTCGC 60.182 52.174 0.00 0.00 36.96 5.03
288 289 3.995048 TGCATCTATAGTCCTCGTACTCG 59.005 47.826 0.00 0.00 38.55 4.18
289 290 5.943706 TTGCATCTATAGTCCTCGTACTC 57.056 43.478 0.00 0.00 0.00 2.59
290 291 6.902771 AATTGCATCTATAGTCCTCGTACT 57.097 37.500 0.00 0.00 0.00 2.73
291 292 8.679100 AGATAATTGCATCTATAGTCCTCGTAC 58.321 37.037 0.00 0.00 33.41 3.67
292 293 8.809468 AGATAATTGCATCTATAGTCCTCGTA 57.191 34.615 0.00 0.00 33.41 3.43
293 294 7.613801 AGAGATAATTGCATCTATAGTCCTCGT 59.386 37.037 0.00 0.00 35.37 4.18
294 295 7.995289 AGAGATAATTGCATCTATAGTCCTCG 58.005 38.462 0.00 0.00 35.37 4.63
295 296 9.189156 AGAGAGATAATTGCATCTATAGTCCTC 57.811 37.037 0.00 0.00 35.37 3.71
296 297 8.970020 CAGAGAGATAATTGCATCTATAGTCCT 58.030 37.037 0.00 0.00 35.37 3.85
297 298 8.748412 ACAGAGAGATAATTGCATCTATAGTCC 58.252 37.037 0.00 0.00 35.37 3.85
331 332 0.460311 TTCTCGGGGATTCTTCGCTC 59.540 55.000 0.00 0.00 35.26 5.03
359 360 3.604772 CGTTCTTCGCTCCTTGTTCTTTG 60.605 47.826 0.00 0.00 0.00 2.77
362 363 1.068741 ACGTTCTTCGCTCCTTGTTCT 59.931 47.619 0.00 0.00 44.19 3.01
363 364 1.499049 ACGTTCTTCGCTCCTTGTTC 58.501 50.000 0.00 0.00 44.19 3.18
365 366 1.202486 TCAACGTTCTTCGCTCCTTGT 60.202 47.619 0.00 0.00 44.19 3.16
366 367 1.457303 CTCAACGTTCTTCGCTCCTTG 59.543 52.381 0.00 0.00 44.19 3.61
367 368 1.340248 TCTCAACGTTCTTCGCTCCTT 59.660 47.619 0.00 0.00 44.19 3.36
382 384 2.909006 AGCCAAGATGGTCTTCTCTCAA 59.091 45.455 0.00 0.00 40.46 3.02
411 413 1.792949 CGAACAGAGAAACCCAGAACG 59.207 52.381 0.00 0.00 0.00 3.95
444 446 4.432741 GGGGTTCTGGCCTCCTGC 62.433 72.222 3.32 0.00 40.16 4.85
465 467 4.222847 GTAGGGAGCGGGGAAGCG 62.223 72.222 0.00 0.00 43.00 4.68
531 539 2.516460 TACTCCTCTCTCCGGCGC 60.516 66.667 0.00 0.00 0.00 6.53
538 546 2.025699 GGACTGTCCTGTACTCCTCTCT 60.026 54.545 19.53 0.00 32.53 3.10
553 568 2.362369 CGGATGCAGGGAGGACTGT 61.362 63.158 0.00 0.00 40.59 3.55
590 609 0.896226 AGAGTGGTACCTTCGCCTTC 59.104 55.000 14.36 0.68 0.00 3.46
623 642 2.043941 ACCCCACCCCACCCTATC 59.956 66.667 0.00 0.00 0.00 2.08
684 705 2.096799 CTACGTTAGGGTTCGCGTAG 57.903 55.000 5.77 8.25 46.49 3.51
685 706 0.098728 GCTACGTTAGGGTTCGCGTA 59.901 55.000 5.77 0.00 38.56 4.42
726 749 1.014044 TCGAAGTGCCTCATCGTTGC 61.014 55.000 0.00 0.00 38.25 4.17
729 752 0.103208 GGATCGAAGTGCCTCATCGT 59.897 55.000 0.00 0.00 38.25 3.73
731 754 2.540265 ATGGATCGAAGTGCCTCATC 57.460 50.000 0.00 0.00 0.00 2.92
734 757 2.315925 TGAATGGATCGAAGTGCCTC 57.684 50.000 0.00 0.00 0.00 4.70
735 758 2.486191 GGATGAATGGATCGAAGTGCCT 60.486 50.000 0.00 0.00 0.00 4.75
736 759 1.876156 GGATGAATGGATCGAAGTGCC 59.124 52.381 0.00 0.00 0.00 5.01
737 760 2.564771 TGGATGAATGGATCGAAGTGC 58.435 47.619 0.00 0.00 0.00 4.40
738 761 4.084171 CGAATGGATGAATGGATCGAAGTG 60.084 45.833 0.00 0.00 0.00 3.16
740 763 3.120408 GCGAATGGATGAATGGATCGAAG 60.120 47.826 0.00 0.00 0.00 3.79
741 764 2.807967 GCGAATGGATGAATGGATCGAA 59.192 45.455 0.00 0.00 0.00 3.71
751 783 3.844090 TCGCGGGCGAATGGATGA 61.844 61.111 14.01 0.00 46.01 2.92
823 855 5.917462 GCCAAATTAATAGTGGGCTGAAAT 58.083 37.500 16.20 0.00 38.37 2.17
833 865 7.855904 CGCGAGAAAATTAGCCAAATTAATAGT 59.144 33.333 0.00 0.00 36.76 2.12
864 896 9.546428 AGCCATTAATTAATCAGCCAAATTAAC 57.454 29.630 19.26 0.00 37.69 2.01
893 928 2.932614 ACGAAGCTGTTGATCTGCATAC 59.067 45.455 0.00 0.00 42.26 2.39
907 942 0.832135 TCCACCAGAAGGACGAAGCT 60.832 55.000 0.00 0.00 38.69 3.74
956 991 6.061441 TGCTCAAACCTAATTTCTTCAGTGA 58.939 36.000 0.00 0.00 0.00 3.41
957 992 6.317789 TGCTCAAACCTAATTTCTTCAGTG 57.682 37.500 0.00 0.00 0.00 3.66
1011 1053 3.068691 CGGGCCTCGAGTTCCAGA 61.069 66.667 18.87 0.00 42.43 3.86
1038 1080 1.348064 TCACGTTCCAGGTCATCCTT 58.652 50.000 0.00 0.00 43.07 3.36
1053 1095 1.813753 CTTGGTGCCGGGTATCACG 60.814 63.158 2.18 0.00 34.20 4.35
1272 1314 2.285660 GCTTTGCGAAATAGCGGAGTAC 60.286 50.000 0.00 0.00 40.67 2.73
1282 1324 2.514803 AGGTAGGTTGCTTTGCGAAAT 58.485 42.857 0.00 0.00 0.00 2.17
1374 1416 4.636206 GTGTCAACAACAAAGAGGAAGACT 59.364 41.667 0.00 0.00 40.31 3.24
1395 1437 1.137675 TCCTCCTCGATCATGCAAGTG 59.862 52.381 0.00 0.00 0.00 3.16
1407 1449 2.802816 CAAATAGCCGATTTCCTCCTCG 59.197 50.000 0.00 0.00 35.45 4.63
1440 1482 3.360340 AGCTCAACTGCTTGCGCC 61.360 61.111 4.18 0.00 40.93 6.53
1482 1524 6.017109 GCACATATGTCCCGAAAGTAATGAAT 60.017 38.462 5.07 0.00 0.00 2.57
1535 1577 9.621629 TCCAGAAGACTAATAAAAAGTGAAACA 57.378 29.630 0.00 0.00 41.43 2.83
1536 1578 9.880064 GTCCAGAAGACTAATAAAAAGTGAAAC 57.120 33.333 0.00 0.00 42.69 2.78
1538 1580 9.621629 TTGTCCAGAAGACTAATAAAAAGTGAA 57.378 29.630 0.00 0.00 46.46 3.18
1570 1613 7.928167 ACACGAGTCAACATGTATTCATATCAT 59.072 33.333 0.00 0.00 32.47 2.45
1593 1636 2.446435 ACCCAATTCATGCACCTACAC 58.554 47.619 0.00 0.00 0.00 2.90
1768 1811 0.613777 AGCAGGCAACAGGTACCTAC 59.386 55.000 15.80 4.46 41.41 3.18
1774 1817 2.281761 CCGAAGCAGGCAACAGGT 60.282 61.111 0.00 0.00 41.41 4.00
2177 2236 9.653287 TCAGTAAAGTCGAAAATAAGATGTGAT 57.347 29.630 0.00 0.00 0.00 3.06
2178 2237 9.653287 ATCAGTAAAGTCGAAAATAAGATGTGA 57.347 29.630 0.00 0.00 0.00 3.58
2179 2238 9.907576 GATCAGTAAAGTCGAAAATAAGATGTG 57.092 33.333 0.00 0.00 0.00 3.21
2180 2239 9.099454 GGATCAGTAAAGTCGAAAATAAGATGT 57.901 33.333 0.00 0.00 0.00 3.06
2193 2252 0.179054 GGCGGGGGATCAGTAAAGTC 60.179 60.000 0.00 0.00 0.00 3.01
2242 2301 6.128172 CCAGAGACATGTTTGTTCTTATCACC 60.128 42.308 0.00 0.00 35.79 4.02
2263 2322 4.380843 TTGTTGGGAATAGAAAGCCAGA 57.619 40.909 0.00 0.00 0.00 3.86
2322 2382 1.005450 GAATTGGGCAGGGGTGTTAGA 59.995 52.381 0.00 0.00 0.00 2.10
2433 2494 3.904965 TGGTAACTCAGTATGGTGTTGGA 59.095 43.478 0.00 0.00 35.55 3.53
2434 2495 4.253685 CTGGTAACTCAGTATGGTGTTGG 58.746 47.826 0.00 0.00 35.55 3.77
2459 2522 5.830991 AGTTTGCCACTAAAAGTATCAACCA 59.169 36.000 0.00 0.00 31.97 3.67
2478 2541 7.651808 TCAGAAAAGGCTTTCATCTTAGTTTG 58.348 34.615 13.76 0.87 42.99 2.93
2509 2572 5.142061 TGTAATACCTACGTATGCCCATG 57.858 43.478 0.00 0.00 35.29 3.66
2531 2594 7.437713 TCCTCACATGAACTCCAAATACTAT 57.562 36.000 0.00 0.00 0.00 2.12
2532 2595 6.867519 TCCTCACATGAACTCCAAATACTA 57.132 37.500 0.00 0.00 0.00 1.82
2533 2596 5.762179 TCCTCACATGAACTCCAAATACT 57.238 39.130 0.00 0.00 0.00 2.12
2579 2642 4.766373 TCTATGGAATTGCAAAGCACAGAA 59.234 37.500 1.71 0.00 38.71 3.02
2603 2666 6.744082 TCACTACACAGAATACATACGAAACG 59.256 38.462 0.00 0.00 0.00 3.60
2673 2736 9.129532 ACTTTATCAGAAAAGGGATCATGATTC 57.870 33.333 10.14 7.68 40.16 2.52
2833 3097 9.604626 GCTTAGATATTATCTGACATTTTGCAC 57.395 33.333 15.13 0.00 40.51 4.57
3049 3313 1.612726 CCTTGACCAAGAGGCAAGAGG 60.613 57.143 9.85 0.00 44.65 3.69
3050 3314 1.349026 TCCTTGACCAAGAGGCAAGAG 59.651 52.381 9.85 0.82 44.65 2.85
3051 3315 1.434188 TCCTTGACCAAGAGGCAAGA 58.566 50.000 9.85 0.00 44.65 3.02
3052 3316 2.290514 TGATCCTTGACCAAGAGGCAAG 60.291 50.000 11.06 1.12 43.07 4.01
3053 3317 1.704628 TGATCCTTGACCAAGAGGCAA 59.295 47.619 11.06 0.00 40.79 4.52
3054 3318 1.280133 CTGATCCTTGACCAAGAGGCA 59.720 52.381 11.06 5.18 40.79 4.75
3055 3319 1.407989 CCTGATCCTTGACCAAGAGGC 60.408 57.143 11.06 1.22 40.79 4.70
3677 3943 7.043961 AGACATCAGAAGATAACGCATAAGA 57.956 36.000 0.00 0.00 31.88 2.10
3737 4003 3.153919 GCAACACCAACCTGAGGAATAA 58.846 45.455 4.99 0.00 0.00 1.40
3876 4142 2.851263 ACTTGAACGATAAGCCACCA 57.149 45.000 0.00 0.00 0.00 4.17
3877 4143 4.501071 TCTTACTTGAACGATAAGCCACC 58.499 43.478 0.00 0.00 0.00 4.61
3878 4144 6.979238 AGTATCTTACTTGAACGATAAGCCAC 59.021 38.462 0.00 0.00 34.86 5.01
4180 4452 4.223700 ACCTCTCTTGACATTATCAGCACA 59.776 41.667 0.00 0.00 38.99 4.57
4323 4646 4.928615 CAGACAACAACAAAGCCTTTCAAA 59.071 37.500 0.00 0.00 0.00 2.69
4368 4691 4.864916 AGCAGCAAGTAACAATATCACG 57.135 40.909 0.00 0.00 0.00 4.35
4892 5215 5.871396 TTTCCTATCTAGACCACACATCC 57.129 43.478 0.00 0.00 0.00 3.51
5263 5587 7.661437 ACAATTGTTCAGCTCAACTATTACTGA 59.339 33.333 9.54 0.00 32.24 3.41
5304 5628 4.636648 CACTAAAACACTGGGTAACACACA 59.363 41.667 0.00 0.00 39.74 3.72
5624 5949 4.551702 AGGCTGTTGTGTACATATCACA 57.448 40.909 0.00 0.00 42.84 3.58
5751 6076 3.964909 ACAAGGAAAAATGCAAGACGTC 58.035 40.909 7.70 7.70 0.00 4.34
5775 6100 5.185442 TCCATCATGCTTGCTTCAACAAATA 59.815 36.000 0.00 0.00 0.00 1.40
5909 6412 3.461061 TGCTATCGAGAAGCAGAAATGG 58.539 45.455 18.43 0.00 44.78 3.16
6025 6606 5.202765 TCAAACCATATTGCATGACCATCT 58.797 37.500 0.00 0.00 0.00 2.90
6036 6617 7.373493 GCCCTAATCATCTTCAAACCATATTG 58.627 38.462 0.00 0.00 0.00 1.90
6139 6720 8.970859 ATACATCTCCAAGGAAATAAACTCAG 57.029 34.615 0.00 0.00 0.00 3.35
6196 6777 7.587037 TCAGTTCAATCAAATCCAAAGTCTT 57.413 32.000 0.00 0.00 0.00 3.01
6231 6812 4.108570 TCCCTATGACCCAATACACAACT 58.891 43.478 0.00 0.00 0.00 3.16
6410 6993 2.954318 ACCATGCAGAAGATGGCAATAC 59.046 45.455 3.12 0.00 43.82 1.89
6430 7013 4.069304 TTGGTACACATCAAGGCAACTAC 58.931 43.478 0.00 0.00 45.59 2.73
6506 7089 9.303116 TGGAGTTTTGCTAAATTTACTCCAATA 57.697 29.630 25.63 10.95 46.29 1.90
6678 7261 1.275666 ATCACTTGACCACCGATCCA 58.724 50.000 0.00 0.00 0.00 3.41
6730 7313 2.348998 GGAGCCCACAGGTCACAG 59.651 66.667 0.00 0.00 45.21 3.66
6927 7585 3.653835 AGGCCTTTTGATCCTCCTAAC 57.346 47.619 0.00 0.00 0.00 2.34
6945 7603 4.207955 TCTAGTGTGCCATCTAGTGTAGG 58.792 47.826 6.73 0.00 36.17 3.18
6979 10713 7.961326 AGGAGAAGCACAACCATTATAATTT 57.039 32.000 0.00 0.00 0.00 1.82
7120 10992 2.456627 AAGGAGTCCTTGAGCAGCA 58.543 52.632 24.01 0.00 42.96 4.41
7466 11385 7.787725 AACCTGCATGTAGTAGTTAATTAGC 57.212 36.000 10.09 0.00 0.00 3.09
7544 11463 5.199024 TCACAACTGCATTTGCTACATTT 57.801 34.783 15.99 0.00 42.66 2.32
7553 11472 3.057033 GCTGGATCTTCACAACTGCATTT 60.057 43.478 0.00 0.00 0.00 2.32
7567 11486 6.887886 ATGATATAAGTGATGGCTGGATCT 57.112 37.500 0.00 0.00 0.00 2.75
7718 11637 4.522789 TCTTGATTTTGGTAACCAGCCTTC 59.477 41.667 0.00 0.00 33.81 3.46
7797 11717 3.157087 AGCCAACATGGAGTCGAAAAAT 58.843 40.909 0.00 0.00 40.96 1.82
7924 11874 1.526887 CGACAACAACATGCGAGAACT 59.473 47.619 0.00 0.00 0.00 3.01
7968 11918 4.032960 ACTGGGCAAACATCTGAACATA 57.967 40.909 0.00 0.00 0.00 2.29
7977 11927 0.829333 TGCAACAACTGGGCAAACAT 59.171 45.000 0.00 0.00 34.05 2.71
8180 12130 2.691927 TGCTACTGTCACTGCAGATTG 58.308 47.619 23.35 9.62 39.62 2.67
8422 12373 3.089284 ACTGTCGGAGTCATATGTCACA 58.911 45.455 1.90 0.00 0.00 3.58
8610 12569 1.296727 GTGGCAACCGGTATAAGAGC 58.703 55.000 8.00 5.49 0.00 4.09
8613 12572 2.159198 AGTACGTGGCAACCGGTATAAG 60.159 50.000 8.00 0.00 35.02 1.73
8643 12602 0.935196 CGGAGGTAAAAGCGGTATGC 59.065 55.000 0.00 0.00 46.98 3.14
8653 12612 4.188462 CAATGTACAGATGCGGAGGTAAA 58.812 43.478 0.33 0.00 0.00 2.01
8657 12616 0.940126 GCAATGTACAGATGCGGAGG 59.060 55.000 17.50 0.00 0.00 4.30
8701 12660 2.503765 TGAATGTTCCATCTCGGGCTAA 59.496 45.455 0.00 0.00 34.36 3.09
8704 12663 1.972872 ATGAATGTTCCATCTCGGGC 58.027 50.000 0.00 0.00 34.36 6.13
8801 12760 6.990939 ACTTAAAAACTCCTCTTCACCAGTAC 59.009 38.462 0.00 0.00 0.00 2.73
8817 12776 5.438761 AGCCACACATGAGACTTAAAAAC 57.561 39.130 0.00 0.00 0.00 2.43
8826 12785 1.114627 ATCGCTAGCCACACATGAGA 58.885 50.000 9.66 0.00 0.00 3.27
8827 12786 1.215244 CATCGCTAGCCACACATGAG 58.785 55.000 9.66 0.00 0.00 2.90
8836 12797 4.530857 ACCACGCCATCGCTAGCC 62.531 66.667 9.66 0.00 39.84 3.93
8995 12987 1.538047 CCCAATGTGTGTCCAGAAGG 58.462 55.000 0.00 0.00 0.00 3.46
9051 13043 6.906157 ATGAAAAGAGGAAAATGCAGAGAA 57.094 33.333 0.00 0.00 0.00 2.87
9083 13075 8.610896 TGTGAATTTAAATTTGGCAGTTTGAAG 58.389 29.630 14.45 0.00 0.00 3.02
9112 13104 4.127907 GTTCTCTCGGAAAACCTTGTCTT 58.872 43.478 0.00 0.00 35.51 3.01
9123 13115 5.319453 TCTTAGTACAAGGTTCTCTCGGAA 58.681 41.667 0.00 0.00 0.00 4.30
9124 13116 4.914983 TCTTAGTACAAGGTTCTCTCGGA 58.085 43.478 0.00 0.00 0.00 4.55
9125 13117 5.838531 ATCTTAGTACAAGGTTCTCTCGG 57.161 43.478 0.00 0.00 0.00 4.63
9126 13118 8.211116 TCTTATCTTAGTACAAGGTTCTCTCG 57.789 38.462 0.00 0.00 0.00 4.04
9127 13119 9.181061 ACTCTTATCTTAGTACAAGGTTCTCTC 57.819 37.037 0.00 0.00 0.00 3.20
9128 13120 9.536510 AACTCTTATCTTAGTACAAGGTTCTCT 57.463 33.333 0.00 0.00 0.00 3.10
9129 13121 9.575783 CAACTCTTATCTTAGTACAAGGTTCTC 57.424 37.037 0.00 0.00 0.00 2.87
9130 13122 8.532819 CCAACTCTTATCTTAGTACAAGGTTCT 58.467 37.037 0.00 0.00 0.00 3.01
9131 13123 7.278203 GCCAACTCTTATCTTAGTACAAGGTTC 59.722 40.741 0.00 0.00 0.00 3.62
9132 13124 7.104290 GCCAACTCTTATCTTAGTACAAGGTT 58.896 38.462 0.00 0.00 0.00 3.50
9133 13125 6.351966 GGCCAACTCTTATCTTAGTACAAGGT 60.352 42.308 0.00 0.00 0.00 3.50
9134 13126 6.049790 GGCCAACTCTTATCTTAGTACAAGG 58.950 44.000 0.00 0.00 0.00 3.61
9135 13127 6.640518 TGGCCAACTCTTATCTTAGTACAAG 58.359 40.000 0.61 0.00 0.00 3.16
9136 13128 6.614694 TGGCCAACTCTTATCTTAGTACAA 57.385 37.500 0.61 0.00 0.00 2.41
9137 13129 6.808321 ATGGCCAACTCTTATCTTAGTACA 57.192 37.500 10.96 0.00 0.00 2.90
9138 13130 7.272978 TCAATGGCCAACTCTTATCTTAGTAC 58.727 38.462 10.96 0.00 0.00 2.73
9139 13131 7.432148 TCAATGGCCAACTCTTATCTTAGTA 57.568 36.000 10.96 0.00 0.00 1.82
9140 13132 6.313519 TCAATGGCCAACTCTTATCTTAGT 57.686 37.500 10.96 0.00 0.00 2.24
9143 13135 9.458727 CATATATCAATGGCCAACTCTTATCTT 57.541 33.333 10.96 0.00 0.00 2.40
9144 13136 8.051535 CCATATATCAATGGCCAACTCTTATCT 58.948 37.037 10.96 0.00 40.07 1.98
9145 13137 8.218338 CCATATATCAATGGCCAACTCTTATC 57.782 38.462 10.96 0.00 40.07 1.75
9168 13160 9.976776 TTCATTAAGGTGGTTATGTTTATACCA 57.023 29.630 0.00 0.00 0.00 3.25
9176 13168 9.747898 TCAGTTAATTCATTAAGGTGGTTATGT 57.252 29.630 0.00 0.00 33.31 2.29
9178 13170 9.975218 AGTCAGTTAATTCATTAAGGTGGTTAT 57.025 29.630 0.00 0.00 33.31 1.89
9179 13171 9.802039 AAGTCAGTTAATTCATTAAGGTGGTTA 57.198 29.630 0.00 0.00 33.31 2.85
9180 13172 8.576442 CAAGTCAGTTAATTCATTAAGGTGGTT 58.424 33.333 0.00 0.00 33.31 3.67
9181 13173 7.724061 ACAAGTCAGTTAATTCATTAAGGTGGT 59.276 33.333 0.00 0.00 33.31 4.16
9182 13174 8.110860 ACAAGTCAGTTAATTCATTAAGGTGG 57.889 34.615 0.00 0.00 33.31 4.61
9183 13175 9.965824 AAACAAGTCAGTTAATTCATTAAGGTG 57.034 29.630 0.00 0.00 33.31 4.00
9234 13226 9.476202 GTTGCTAACAGGTCAAATTTTAGATTT 57.524 29.630 0.00 0.00 0.00 2.17
9235 13227 8.637986 TGTTGCTAACAGGTCAAATTTTAGATT 58.362 29.630 0.00 0.00 36.25 2.40
9236 13228 8.177119 TGTTGCTAACAGGTCAAATTTTAGAT 57.823 30.769 0.00 0.00 36.25 1.98
9237 13229 7.575414 TGTTGCTAACAGGTCAAATTTTAGA 57.425 32.000 0.00 0.00 36.25 2.10
9238 13230 7.148755 GCATGTTGCTAACAGGTCAAATTTTAG 60.149 37.037 12.76 0.00 45.95 1.85
9239 13231 6.644592 GCATGTTGCTAACAGGTCAAATTTTA 59.355 34.615 12.76 0.00 45.95 1.52
9240 13232 5.466393 GCATGTTGCTAACAGGTCAAATTTT 59.534 36.000 12.76 0.00 45.95 1.82
9241 13233 4.990426 GCATGTTGCTAACAGGTCAAATTT 59.010 37.500 12.76 0.00 45.95 1.82
9242 13234 4.039004 TGCATGTTGCTAACAGGTCAAATT 59.961 37.500 12.76 0.00 45.95 1.82
9243 13235 3.573538 TGCATGTTGCTAACAGGTCAAAT 59.426 39.130 12.76 0.00 45.95 2.32
9244 13236 2.954989 TGCATGTTGCTAACAGGTCAAA 59.045 40.909 12.76 0.00 45.95 2.69
9245 13237 2.293122 GTGCATGTTGCTAACAGGTCAA 59.707 45.455 12.76 1.16 45.95 3.18
9246 13238 1.879380 GTGCATGTTGCTAACAGGTCA 59.121 47.619 12.76 9.49 45.95 4.02
9247 13239 1.879380 TGTGCATGTTGCTAACAGGTC 59.121 47.619 12.76 7.73 45.95 3.85
9248 13240 1.608590 GTGTGCATGTTGCTAACAGGT 59.391 47.619 12.76 0.00 45.95 4.00
9249 13241 1.400113 CGTGTGCATGTTGCTAACAGG 60.400 52.381 8.63 8.63 45.95 4.00
9250 13242 1.264020 ACGTGTGCATGTTGCTAACAG 59.736 47.619 0.00 2.71 45.95 3.16
9251 13243 1.003008 CACGTGTGCATGTTGCTAACA 60.003 47.619 7.58 4.56 45.31 2.41
9252 13244 1.002900 ACACGTGTGCATGTTGCTAAC 60.003 47.619 22.71 0.00 45.31 2.34
9253 13245 1.304254 ACACGTGTGCATGTTGCTAA 58.696 45.000 22.71 0.00 45.31 3.09
9254 13246 2.156343 TACACGTGTGCATGTTGCTA 57.844 45.000 30.83 3.71 45.31 3.49
9255 13247 1.522668 ATACACGTGTGCATGTTGCT 58.477 45.000 30.83 2.09 45.31 3.91
9256 13248 1.978097 CAATACACGTGTGCATGTTGC 59.022 47.619 30.83 0.00 45.29 4.17
9263 13255 1.231221 TTGGACCAATACACGTGTGC 58.769 50.000 30.83 8.82 0.00 4.57
9264 13256 3.820689 CATTTGGACCAATACACGTGTG 58.179 45.455 30.83 16.39 0.00 3.82
9274 13266 1.550327 TTATGCCGCATTTGGACCAA 58.450 45.000 11.97 1.69 0.00 3.67
9275 13267 1.550327 TTTATGCCGCATTTGGACCA 58.450 45.000 11.97 0.00 0.00 4.02
9312 13304 3.809832 ACTGCATTATCATTAGGTCGTGC 59.190 43.478 0.00 0.00 0.00 5.34
9346 13733 3.181491 CCGACAACAACAAAGAACCATGT 60.181 43.478 0.00 0.00 0.00 3.21
9391 13778 7.112122 AGTGAGTAATATTGAATGCAAGGTCA 58.888 34.615 0.00 0.00 37.45 4.02
9441 13834 4.269523 TTTGCCTCCCTGCGCACT 62.270 61.111 5.66 0.00 33.97 4.40
9446 13839 3.365265 CACCGTTTGCCTCCCTGC 61.365 66.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.