Multiple sequence alignment - TraesCS6B01G306600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G306600 chr6B 100.000 4114 0 0 1 4114 550073251 550077364 0.000000e+00 7598.0
1 TraesCS6B01G306600 chr6A 94.090 2572 86 25 686 3195 506232054 506234621 0.000000e+00 3847.0
2 TraesCS6B01G306600 chr6A 95.987 922 30 4 3194 4114 506234745 506235660 0.000000e+00 1491.0
3 TraesCS6B01G306600 chr6D 95.475 1746 62 11 2372 4114 365276917 365278648 0.000000e+00 2771.0
4 TraesCS6B01G306600 chr6D 89.861 1371 73 29 684 2019 365275277 365276616 0.000000e+00 1701.0
5 TraesCS6B01G306600 chr6D 92.135 267 13 3 1999 2257 365276627 365276893 1.810000e-98 370.0
6 TraesCS6B01G306600 chr2B 96.833 442 14 0 1 442 763844726 763844285 0.000000e+00 739.0
7 TraesCS6B01G306600 chr2B 96.380 442 16 0 1 442 723437589 723438030 0.000000e+00 728.0
8 TraesCS6B01G306600 chr2B 90.909 99 5 2 2243 2337 354879114 354879212 3.340000e-26 130.0
9 TraesCS6B01G306600 chr5B 96.606 442 15 0 1 442 427216123 427215682 0.000000e+00 734.0
10 TraesCS6B01G306600 chr5B 96.404 445 16 0 1 445 571108491 571108047 0.000000e+00 734.0
11 TraesCS6B01G306600 chr5B 96.180 445 17 0 1 445 341523607 341523163 0.000000e+00 728.0
12 TraesCS6B01G306600 chr5B 95.740 446 17 1 1 446 59719138 59719581 0.000000e+00 717.0
13 TraesCS6B01G306600 chr4A 96.396 444 16 0 1 444 721376480 721376037 0.000000e+00 732.0
14 TraesCS6B01G306600 chr4A 92.391 92 3 2 2247 2334 285485360 285485451 1.200000e-25 128.0
15 TraesCS6B01G306600 chr4A 82.979 94 9 6 1180 1268 613941637 613941728 1.230000e-10 78.7
16 TraesCS6B01G306600 chr1B 96.154 442 17 0 1 442 677573737 677573296 0.000000e+00 723.0
17 TraesCS6B01G306600 chr7B 95.928 442 18 0 1 442 654865079 654864638 0.000000e+00 717.0
18 TraesCS6B01G306600 chr7B 81.098 164 27 4 1087 1248 535822661 535822822 1.200000e-25 128.0
19 TraesCS6B01G306600 chr7B 76.562 128 22 8 475 596 431329324 431329449 3.430000e-06 63.9
20 TraesCS6B01G306600 chr2D 94.318 88 1 2 2254 2337 643235908 643235821 9.280000e-27 132.0
21 TraesCS6B01G306600 chr2D 91.489 94 4 3 2251 2340 588164123 588164216 4.320000e-25 126.0
22 TraesCS6B01G306600 chr2D 91.489 94 3 3 2252 2341 382456026 382455934 1.550000e-24 124.0
23 TraesCS6B01G306600 chr7D 78.974 195 36 4 1087 1279 507420393 507420584 1.200000e-25 128.0
24 TraesCS6B01G306600 chr1D 92.308 91 3 3 2251 2337 318382881 318382791 4.320000e-25 126.0
25 TraesCS6B01G306600 chr1D 89.320 103 5 4 2242 2338 394271213 394271111 1.550000e-24 124.0
26 TraesCS6B01G306600 chr7A 80.368 163 30 2 1087 1248 577223165 577223326 5.580000e-24 122.0
27 TraesCS6B01G306600 chr7A 83.696 92 9 5 1180 1268 93143318 93143406 9.480000e-12 82.4
28 TraesCS6B01G306600 chr2A 87.736 106 7 5 2248 2348 39327416 39327520 7.220000e-23 119.0
29 TraesCS6B01G306600 chr3A 84.270 89 10 3 1182 1268 681734640 681734726 2.640000e-12 84.2
30 TraesCS6B01G306600 chr1A 83.516 91 11 3 1180 1268 5950110 5950198 9.480000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G306600 chr6B 550073251 550077364 4113 False 7598 7598 100.000000 1 4114 1 chr6B.!!$F1 4113
1 TraesCS6B01G306600 chr6A 506232054 506235660 3606 False 2669 3847 95.038500 686 4114 2 chr6A.!!$F1 3428
2 TraesCS6B01G306600 chr6D 365275277 365278648 3371 False 1614 2771 92.490333 684 4114 3 chr6D.!!$F1 3430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.038983 GGTGCGCGGGTAATTGTTTT 60.039 50.0 8.83 0.00 0.00 2.43 F
406 407 0.167251 AAACGACCTATTTTGCGGCG 59.833 50.0 0.51 0.51 0.00 6.46 F
508 509 0.182775 GTTCAGTGGGAGGTGGTGTT 59.817 55.0 0.00 0.00 0.00 3.32 F
637 638 0.317436 GAGAGGCGAGTGTATGAGCG 60.317 60.0 0.00 0.00 0.00 5.03 F
653 654 0.320771 AGCGCCACGAGACTCAAATT 60.321 50.0 2.29 0.00 0.00 1.82 F
654 655 0.517316 GCGCCACGAGACTCAAATTT 59.483 50.0 0.00 0.00 0.00 1.82 F
1943 1987 0.682852 AACGACCACTTCCGATTGGA 59.317 50.0 0.00 0.00 44.61 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 1333 0.679505 ACTGCTACAGCGTTTCCAGA 59.320 50.000 0.0 0.0 45.83 3.86 R
1618 1659 1.473278 GGGAGACTCGTGGTAGAACTG 59.527 57.143 0.0 0.0 0.00 3.16 R
1889 1933 2.176798 CCCTACATAAATGCCCCTTGGA 59.823 50.000 0.0 0.0 0.00 3.53 R
2532 2627 0.840722 GGAAAGAGGGGAGTGGGACA 60.841 60.000 0.0 0.0 0.00 4.02 R
2577 2677 6.003326 TCCATGAACTCAAGCAGTTTTGATA 58.997 36.000 0.0 0.0 46.10 2.15 R
3101 3201 5.126061 CCATGTCTGAGTTTATTTGGAAGGG 59.874 44.000 0.0 0.0 0.00 3.95 R
3859 4086 0.382515 GCCGTCGCTCTTGAGATACT 59.617 55.000 1.3 0.0 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.463944 GCAATACATACCTTGTAGGCGT 58.536 45.455 0.00 0.00 43.87 5.68
22 23 3.875134 GCAATACATACCTTGTAGGCGTT 59.125 43.478 0.00 0.00 43.87 4.84
23 24 4.334481 GCAATACATACCTTGTAGGCGTTT 59.666 41.667 0.00 0.00 43.87 3.60
24 25 5.163693 GCAATACATACCTTGTAGGCGTTTT 60.164 40.000 0.00 0.00 43.87 2.43
25 26 6.255215 CAATACATACCTTGTAGGCGTTTTG 58.745 40.000 0.00 0.00 43.87 2.44
26 27 3.746940 ACATACCTTGTAGGCGTTTTGT 58.253 40.909 0.00 0.00 39.63 2.83
27 28 3.749609 ACATACCTTGTAGGCGTTTTGTC 59.250 43.478 0.00 0.00 39.63 3.18
28 29 2.335316 ACCTTGTAGGCGTTTTGTCA 57.665 45.000 0.00 0.00 39.63 3.58
29 30 2.645802 ACCTTGTAGGCGTTTTGTCAA 58.354 42.857 0.00 0.00 39.63 3.18
30 31 3.018149 ACCTTGTAGGCGTTTTGTCAAA 58.982 40.909 0.00 0.00 39.63 2.69
31 32 3.181494 ACCTTGTAGGCGTTTTGTCAAAC 60.181 43.478 0.00 0.00 39.63 2.93
32 33 3.181495 CCTTGTAGGCGTTTTGTCAAACA 60.181 43.478 0.00 0.00 42.30 2.83
33 34 3.408288 TGTAGGCGTTTTGTCAAACAC 57.592 42.857 0.00 0.00 42.30 3.32
34 35 2.097791 TGTAGGCGTTTTGTCAAACACC 59.902 45.455 0.00 0.19 43.08 4.16
35 36 1.470051 AGGCGTTTTGTCAAACACCT 58.530 45.000 0.00 2.57 46.45 4.00
36 37 2.287393 GGCGTTTTGTCAAACACCTT 57.713 45.000 0.00 0.00 40.60 3.50
37 38 1.923864 GGCGTTTTGTCAAACACCTTG 59.076 47.619 0.00 0.00 40.60 3.61
38 39 1.323235 GCGTTTTGTCAAACACCTTGC 59.677 47.619 0.00 0.00 42.30 4.01
39 40 1.581602 CGTTTTGTCAAACACCTTGCG 59.418 47.619 0.00 0.00 42.30 4.85
40 41 1.923864 GTTTTGTCAAACACCTTGCGG 59.076 47.619 0.00 0.00 41.85 5.69
41 42 0.457851 TTTGTCAAACACCTTGCGGG 59.542 50.000 0.00 0.00 41.89 6.13
42 43 2.010582 TTGTCAAACACCTTGCGGGC 62.011 55.000 0.00 0.00 39.10 6.13
43 44 2.124109 TCAAACACCTTGCGGGCA 60.124 55.556 0.00 0.00 39.10 5.36
44 45 2.027460 CAAACACCTTGCGGGCAC 59.973 61.111 0.00 0.00 39.10 5.01
45 46 3.591835 AAACACCTTGCGGGCACG 61.592 61.111 2.50 2.50 44.63 5.34
83 84 4.373116 GCGCTGTTCCTGGGACGA 62.373 66.667 0.00 0.00 0.00 4.20
84 85 2.432628 CGCTGTTCCTGGGACGAC 60.433 66.667 0.00 0.00 0.00 4.34
85 86 2.432628 GCTGTTCCTGGGACGACG 60.433 66.667 0.00 0.00 0.00 5.12
86 87 2.261671 CTGTTCCTGGGACGACGG 59.738 66.667 0.00 0.00 0.00 4.79
87 88 2.203523 TGTTCCTGGGACGACGGA 60.204 61.111 0.00 0.00 0.00 4.69
88 89 2.214181 CTGTTCCTGGGACGACGGAG 62.214 65.000 0.00 0.00 0.00 4.63
89 90 2.678934 TTCCTGGGACGACGGAGG 60.679 66.667 0.00 0.00 0.00 4.30
115 116 3.962421 CGCCGGCGGTACTAGGAG 61.962 72.222 40.50 8.79 35.56 3.69
116 117 3.603671 GCCGGCGGTACTAGGAGG 61.604 72.222 28.82 0.00 0.00 4.30
117 118 2.910994 CCGGCGGTACTAGGAGGG 60.911 72.222 19.97 0.00 0.00 4.30
118 119 2.910994 CGGCGGTACTAGGAGGGG 60.911 72.222 0.00 0.00 0.00 4.79
119 120 2.605299 GGCGGTACTAGGAGGGGA 59.395 66.667 0.00 0.00 0.00 4.81
120 121 1.155624 GGCGGTACTAGGAGGGGAT 59.844 63.158 0.00 0.00 0.00 3.85
121 122 1.186267 GGCGGTACTAGGAGGGGATG 61.186 65.000 0.00 0.00 0.00 3.51
122 123 1.186267 GCGGTACTAGGAGGGGATGG 61.186 65.000 0.00 0.00 0.00 3.51
123 124 0.542232 CGGTACTAGGAGGGGATGGG 60.542 65.000 0.00 0.00 0.00 4.00
124 125 0.836830 GGTACTAGGAGGGGATGGGC 60.837 65.000 0.00 0.00 0.00 5.36
125 126 1.155390 TACTAGGAGGGGATGGGCG 59.845 63.158 0.00 0.00 0.00 6.13
126 127 2.382023 TACTAGGAGGGGATGGGCGG 62.382 65.000 0.00 0.00 0.00 6.13
127 128 3.444417 TAGGAGGGGATGGGCGGA 61.444 66.667 0.00 0.00 0.00 5.54
128 129 2.965226 CTAGGAGGGGATGGGCGGAA 62.965 65.000 0.00 0.00 0.00 4.30
129 130 2.965226 TAGGAGGGGATGGGCGGAAG 62.965 65.000 0.00 0.00 0.00 3.46
158 159 3.249961 GGGGATAGGCCGGGGAAG 61.250 72.222 2.18 0.00 37.63 3.46
159 160 3.955044 GGGATAGGCCGGGGAAGC 61.955 72.222 2.18 0.00 37.63 3.86
166 167 4.475135 GCCGGGGAAGCCTGAGAC 62.475 72.222 2.18 0.00 0.00 3.36
167 168 4.148825 CCGGGGAAGCCTGAGACG 62.149 72.222 0.00 0.00 0.00 4.18
168 169 4.148825 CGGGGAAGCCTGAGACGG 62.149 72.222 0.00 0.00 0.00 4.79
169 170 3.003763 GGGGAAGCCTGAGACGGT 61.004 66.667 0.00 0.00 0.00 4.83
170 171 2.579738 GGGAAGCCTGAGACGGTC 59.420 66.667 0.00 0.00 0.00 4.79
171 172 2.182030 GGAAGCCTGAGACGGTCG 59.818 66.667 1.89 0.00 0.00 4.79
172 173 2.507324 GAAGCCTGAGACGGTCGC 60.507 66.667 4.83 4.83 0.00 5.19
173 174 3.991536 GAAGCCTGAGACGGTCGCC 62.992 68.421 9.41 3.31 0.00 5.54
227 228 4.821589 GGGGTGGAAGCGCGAGAG 62.822 72.222 12.10 0.00 37.58 3.20
228 229 4.821589 GGGTGGAAGCGCGAGAGG 62.822 72.222 12.10 0.00 33.03 3.69
229 230 3.760035 GGTGGAAGCGCGAGAGGA 61.760 66.667 12.10 0.00 0.00 3.71
230 231 2.261671 GTGGAAGCGCGAGAGGAA 59.738 61.111 12.10 0.00 0.00 3.36
231 232 1.807573 GTGGAAGCGCGAGAGGAAG 60.808 63.158 12.10 0.00 0.00 3.46
232 233 1.977009 TGGAAGCGCGAGAGGAAGA 60.977 57.895 12.10 0.00 0.00 2.87
233 234 1.226831 GGAAGCGCGAGAGGAAGAG 60.227 63.158 12.10 0.00 0.00 2.85
234 235 1.876263 GAAGCGCGAGAGGAAGAGC 60.876 63.158 12.10 0.00 0.00 4.09
238 239 4.882396 GCGAGAGGAAGAGCGGGC 62.882 72.222 0.00 0.00 0.00 6.13
239 240 4.560856 CGAGAGGAAGAGCGGGCG 62.561 72.222 0.00 0.00 0.00 6.13
240 241 4.882396 GAGAGGAAGAGCGGGCGC 62.882 72.222 0.00 0.00 42.33 6.53
282 283 3.370231 GTTGTGGGCGCCCGAAAT 61.370 61.111 39.00 0.00 39.42 2.17
283 284 2.041686 GTTGTGGGCGCCCGAAATA 61.042 57.895 39.00 20.38 39.42 1.40
284 285 2.041686 TTGTGGGCGCCCGAAATAC 61.042 57.895 39.00 30.30 39.42 1.89
285 286 3.569690 GTGGGCGCCCGAAATACG 61.570 66.667 39.00 0.00 39.42 3.06
294 295 3.920553 CGAAATACGGTGCGCGGG 61.921 66.667 8.83 0.00 38.46 6.13
295 296 2.816520 GAAATACGGTGCGCGGGT 60.817 61.111 8.83 2.59 0.00 5.28
296 297 1.519013 GAAATACGGTGCGCGGGTA 60.519 57.895 8.83 5.11 0.00 3.69
297 298 1.079266 AAATACGGTGCGCGGGTAA 60.079 52.632 8.83 0.00 0.00 2.85
298 299 0.462403 AAATACGGTGCGCGGGTAAT 60.462 50.000 8.83 0.00 0.00 1.89
299 300 0.462403 AATACGGTGCGCGGGTAATT 60.462 50.000 8.83 0.00 0.00 1.40
300 301 1.155424 ATACGGTGCGCGGGTAATTG 61.155 55.000 8.83 0.00 0.00 2.32
301 302 2.504163 TACGGTGCGCGGGTAATTGT 62.504 55.000 8.83 0.00 0.00 2.71
302 303 2.682876 CGGTGCGCGGGTAATTGTT 61.683 57.895 8.83 0.00 0.00 2.83
303 304 1.582461 GGTGCGCGGGTAATTGTTT 59.418 52.632 8.83 0.00 0.00 2.83
304 305 0.038983 GGTGCGCGGGTAATTGTTTT 60.039 50.000 8.83 0.00 0.00 2.43
305 306 1.603425 GGTGCGCGGGTAATTGTTTTT 60.603 47.619 8.83 0.00 0.00 1.94
306 307 1.453900 GTGCGCGGGTAATTGTTTTTG 59.546 47.619 8.83 0.00 0.00 2.44
307 308 1.337071 TGCGCGGGTAATTGTTTTTGA 59.663 42.857 8.83 0.00 0.00 2.69
308 309 1.717113 GCGCGGGTAATTGTTTTTGAC 59.283 47.619 8.83 0.00 0.00 3.18
309 310 2.321263 CGCGGGTAATTGTTTTTGACC 58.679 47.619 0.00 0.00 0.00 4.02
310 311 2.321263 GCGGGTAATTGTTTTTGACCG 58.679 47.619 0.00 0.00 42.68 4.79
311 312 2.321263 CGGGTAATTGTTTTTGACCGC 58.679 47.619 0.00 0.00 33.25 5.68
312 313 2.321263 GGGTAATTGTTTTTGACCGCG 58.679 47.619 0.00 0.00 0.00 6.46
313 314 1.717113 GGTAATTGTTTTTGACCGCGC 59.283 47.619 0.00 0.00 0.00 6.86
314 315 1.380771 GTAATTGTTTTTGACCGCGCG 59.619 47.619 25.67 25.67 0.00 6.86
315 316 1.544777 AATTGTTTTTGACCGCGCGC 61.545 50.000 27.36 23.91 0.00 6.86
316 317 4.615834 TGTTTTTGACCGCGCGCC 62.616 61.111 27.36 18.76 0.00 6.53
327 328 4.279043 GCGCGCCCAACCTGTTTT 62.279 61.111 23.24 0.00 0.00 2.43
328 329 2.910345 GCGCGCCCAACCTGTTTTA 61.910 57.895 23.24 0.00 0.00 1.52
329 330 1.209127 CGCGCCCAACCTGTTTTAG 59.791 57.895 0.00 0.00 0.00 1.85
330 331 1.080772 GCGCCCAACCTGTTTTAGC 60.081 57.895 0.00 0.00 0.00 3.09
331 332 1.209127 CGCCCAACCTGTTTTAGCG 59.791 57.895 4.40 4.40 35.82 4.26
332 333 1.080772 GCCCAACCTGTTTTAGCGC 60.081 57.895 0.00 0.00 0.00 5.92
333 334 1.209127 CCCAACCTGTTTTAGCGCG 59.791 57.895 0.00 0.00 0.00 6.86
334 335 1.442017 CCAACCTGTTTTAGCGCGC 60.442 57.895 26.66 26.66 0.00 6.86
335 336 1.792057 CAACCTGTTTTAGCGCGCG 60.792 57.895 28.44 28.44 0.00 6.86
336 337 3.588891 AACCTGTTTTAGCGCGCGC 62.589 57.895 45.10 45.10 42.33 6.86
395 396 3.475774 CGCGCGCTAAAACGACCT 61.476 61.111 30.48 0.00 34.06 3.85
396 397 2.153945 CGCGCGCTAAAACGACCTA 61.154 57.895 30.48 0.00 34.06 3.08
397 398 1.477030 CGCGCGCTAAAACGACCTAT 61.477 55.000 30.48 0.00 34.06 2.57
398 399 0.648958 GCGCGCTAAAACGACCTATT 59.351 50.000 26.67 0.00 34.06 1.73
399 400 1.061566 GCGCGCTAAAACGACCTATTT 59.938 47.619 26.67 0.00 34.06 1.40
400 401 2.475022 GCGCGCTAAAACGACCTATTTT 60.475 45.455 26.67 0.00 34.06 1.82
401 402 3.088552 CGCGCTAAAACGACCTATTTTG 58.911 45.455 5.56 0.00 34.06 2.44
402 403 2.844223 GCGCTAAAACGACCTATTTTGC 59.156 45.455 0.00 0.00 34.06 3.68
403 404 3.088552 CGCTAAAACGACCTATTTTGCG 58.911 45.455 11.24 11.24 38.67 4.85
404 405 3.422655 GCTAAAACGACCTATTTTGCGG 58.577 45.455 0.00 0.00 31.79 5.69
405 406 2.341318 AAAACGACCTATTTTGCGGC 57.659 45.000 0.00 0.00 0.00 6.53
406 407 0.167251 AAACGACCTATTTTGCGGCG 59.833 50.000 0.51 0.51 0.00 6.46
407 408 2.022762 CGACCTATTTTGCGGCGC 59.977 61.111 27.44 27.44 0.00 6.53
408 409 2.022762 GACCTATTTTGCGGCGCG 59.977 61.111 28.09 13.33 0.00 6.86
409 410 3.449095 GACCTATTTTGCGGCGCGG 62.449 63.158 28.09 22.36 0.00 6.46
410 411 4.905193 CCTATTTTGCGGCGCGGC 62.905 66.667 30.55 30.55 0.00 6.53
428 429 3.006706 GCTAGTTTAGCGCGGCTG 58.993 61.111 8.83 0.00 42.62 4.85
429 430 1.810030 GCTAGTTTAGCGCGGCTGT 60.810 57.895 8.83 0.00 42.62 4.40
430 431 1.359459 GCTAGTTTAGCGCGGCTGTT 61.359 55.000 8.83 0.00 42.62 3.16
431 432 0.370273 CTAGTTTAGCGCGGCTGTTG 59.630 55.000 8.83 0.00 40.10 3.33
432 433 1.017177 TAGTTTAGCGCGGCTGTTGG 61.017 55.000 8.83 0.00 40.10 3.77
433 434 2.031314 TTTAGCGCGGCTGTTGGA 59.969 55.556 8.83 0.00 40.10 3.53
434 435 2.032634 TTTAGCGCGGCTGTTGGAG 61.033 57.895 8.83 0.00 40.10 3.86
435 436 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
436 437 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
437 438 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
438 439 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
439 440 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
440 441 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
441 442 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
442 443 0.461548 CGGCTGTTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
443 444 1.134699 CGGCTGTTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
444 445 2.484417 CGGCTGTTGGAGATGCTCTAAT 60.484 50.000 0.00 0.00 33.81 1.73
445 446 2.877168 GGCTGTTGGAGATGCTCTAATG 59.123 50.000 0.00 0.00 33.81 1.90
446 447 3.432749 GGCTGTTGGAGATGCTCTAATGA 60.433 47.826 0.00 0.00 33.81 2.57
447 448 4.387598 GCTGTTGGAGATGCTCTAATGAT 58.612 43.478 0.00 0.00 33.81 2.45
448 449 4.820716 GCTGTTGGAGATGCTCTAATGATT 59.179 41.667 0.00 0.00 33.81 2.57
449 450 5.277876 GCTGTTGGAGATGCTCTAATGATTG 60.278 44.000 0.00 0.00 33.81 2.67
450 451 5.128205 TGTTGGAGATGCTCTAATGATTGG 58.872 41.667 0.00 0.00 33.81 3.16
451 452 5.104402 TGTTGGAGATGCTCTAATGATTGGA 60.104 40.000 0.00 0.00 33.81 3.53
452 453 5.837770 TGGAGATGCTCTAATGATTGGAT 57.162 39.130 0.00 0.00 0.00 3.41
453 454 6.196918 TGGAGATGCTCTAATGATTGGATT 57.803 37.500 0.00 0.00 0.00 3.01
454 455 6.607970 TGGAGATGCTCTAATGATTGGATTT 58.392 36.000 0.00 0.00 0.00 2.17
455 456 7.064866 TGGAGATGCTCTAATGATTGGATTTT 58.935 34.615 0.00 0.00 0.00 1.82
456 457 7.562454 TGGAGATGCTCTAATGATTGGATTTTT 59.438 33.333 0.00 0.00 0.00 1.94
457 458 8.081025 GGAGATGCTCTAATGATTGGATTTTTC 58.919 37.037 0.00 0.00 0.00 2.29
458 459 8.763984 AGATGCTCTAATGATTGGATTTTTCT 57.236 30.769 0.00 0.00 0.00 2.52
459 460 8.630917 AGATGCTCTAATGATTGGATTTTTCTG 58.369 33.333 0.00 0.00 0.00 3.02
460 461 6.567050 TGCTCTAATGATTGGATTTTTCTGC 58.433 36.000 0.00 0.00 0.00 4.26
461 462 6.153170 TGCTCTAATGATTGGATTTTTCTGCA 59.847 34.615 0.00 0.00 0.00 4.41
462 463 7.147794 TGCTCTAATGATTGGATTTTTCTGCAT 60.148 33.333 0.00 0.00 0.00 3.96
463 464 7.709613 GCTCTAATGATTGGATTTTTCTGCATT 59.290 33.333 0.00 0.00 0.00 3.56
464 465 9.595823 CTCTAATGATTGGATTTTTCTGCATTT 57.404 29.630 0.00 0.00 0.00 2.32
470 471 9.722184 TGATTGGATTTTTCTGCATTTATTTCA 57.278 25.926 0.00 0.00 0.00 2.69
473 474 8.031848 TGGATTTTTCTGCATTTATTTCAAGC 57.968 30.769 0.00 0.00 0.00 4.01
474 475 7.879160 TGGATTTTTCTGCATTTATTTCAAGCT 59.121 29.630 0.00 0.00 0.00 3.74
475 476 8.724229 GGATTTTTCTGCATTTATTTCAAGCTT 58.276 29.630 0.00 0.00 0.00 3.74
478 479 9.934190 TTTTTCTGCATTTATTTCAAGCTTTTC 57.066 25.926 0.00 0.00 0.00 2.29
479 480 6.932901 TCTGCATTTATTTCAAGCTTTTCG 57.067 33.333 0.00 0.00 0.00 3.46
480 481 5.863397 TCTGCATTTATTTCAAGCTTTTCGG 59.137 36.000 0.00 0.00 0.00 4.30
481 482 4.388469 TGCATTTATTTCAAGCTTTTCGGC 59.612 37.500 0.00 0.00 0.00 5.54
482 483 4.490799 GCATTTATTTCAAGCTTTTCGGCG 60.491 41.667 0.00 0.00 37.29 6.46
483 484 4.491234 TTTATTTCAAGCTTTTCGGCGA 57.509 36.364 4.99 4.99 37.29 5.54
484 485 4.695217 TTATTTCAAGCTTTTCGGCGAT 57.305 36.364 11.76 0.00 37.29 4.58
485 486 2.330231 TTTCAAGCTTTTCGGCGATG 57.670 45.000 11.76 4.79 37.29 3.84
486 487 1.234821 TTCAAGCTTTTCGGCGATGT 58.765 45.000 11.76 0.00 37.29 3.06
487 488 2.087501 TCAAGCTTTTCGGCGATGTA 57.912 45.000 11.76 0.00 37.29 2.29
488 489 2.627945 TCAAGCTTTTCGGCGATGTAT 58.372 42.857 11.76 0.00 37.29 2.29
489 490 2.351418 TCAAGCTTTTCGGCGATGTATG 59.649 45.455 11.76 6.02 37.29 2.39
490 491 2.024176 AGCTTTTCGGCGATGTATGT 57.976 45.000 11.76 0.00 37.29 2.29
491 492 2.356135 AGCTTTTCGGCGATGTATGTT 58.644 42.857 11.76 0.00 37.29 2.71
492 493 2.351726 AGCTTTTCGGCGATGTATGTTC 59.648 45.455 11.76 0.00 37.29 3.18
493 494 2.095213 GCTTTTCGGCGATGTATGTTCA 59.905 45.455 11.76 0.00 0.00 3.18
494 495 3.785505 GCTTTTCGGCGATGTATGTTCAG 60.786 47.826 11.76 0.00 0.00 3.02
495 496 2.665649 TTCGGCGATGTATGTTCAGT 57.334 45.000 11.76 0.00 0.00 3.41
496 497 1.921243 TCGGCGATGTATGTTCAGTG 58.079 50.000 4.99 0.00 0.00 3.66
497 498 0.930310 CGGCGATGTATGTTCAGTGG 59.070 55.000 0.00 0.00 0.00 4.00
498 499 1.299541 GGCGATGTATGTTCAGTGGG 58.700 55.000 0.00 0.00 0.00 4.61
499 500 1.134521 GGCGATGTATGTTCAGTGGGA 60.135 52.381 0.00 0.00 0.00 4.37
500 501 2.205074 GCGATGTATGTTCAGTGGGAG 58.795 52.381 0.00 0.00 0.00 4.30
501 502 2.826428 CGATGTATGTTCAGTGGGAGG 58.174 52.381 0.00 0.00 0.00 4.30
502 503 2.168521 CGATGTATGTTCAGTGGGAGGT 59.831 50.000 0.00 0.00 0.00 3.85
503 504 3.535561 GATGTATGTTCAGTGGGAGGTG 58.464 50.000 0.00 0.00 0.00 4.00
504 505 1.628340 TGTATGTTCAGTGGGAGGTGG 59.372 52.381 0.00 0.00 0.00 4.61
505 506 1.628846 GTATGTTCAGTGGGAGGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
506 507 0.401738 ATGTTCAGTGGGAGGTGGTG 59.598 55.000 0.00 0.00 0.00 4.17
507 508 0.986019 TGTTCAGTGGGAGGTGGTGT 60.986 55.000 0.00 0.00 0.00 4.16
508 509 0.182775 GTTCAGTGGGAGGTGGTGTT 59.817 55.000 0.00 0.00 0.00 3.32
509 510 0.472471 TTCAGTGGGAGGTGGTGTTC 59.528 55.000 0.00 0.00 0.00 3.18
510 511 1.073199 CAGTGGGAGGTGGTGTTCC 59.927 63.158 0.00 0.00 0.00 3.62
523 524 4.649267 TGGTGTTCCCATCAACTATGAA 57.351 40.909 0.00 0.00 38.72 2.57
524 525 4.588899 TGGTGTTCCCATCAACTATGAAG 58.411 43.478 0.00 0.00 38.72 3.02
525 526 4.288366 TGGTGTTCCCATCAACTATGAAGA 59.712 41.667 0.00 0.00 38.72 2.87
526 527 4.636206 GGTGTTCCCATCAACTATGAAGAC 59.364 45.833 0.00 0.00 39.49 3.01
527 528 4.330074 GTGTTCCCATCAACTATGAAGACG 59.670 45.833 0.00 0.00 39.49 4.18
528 529 4.020573 TGTTCCCATCAACTATGAAGACGT 60.021 41.667 0.00 0.00 39.49 4.34
529 530 4.386867 TCCCATCAACTATGAAGACGTC 57.613 45.455 7.70 7.70 39.49 4.34
530 531 4.023980 TCCCATCAACTATGAAGACGTCT 58.976 43.478 13.58 13.58 39.49 4.18
531 532 4.115516 CCCATCAACTATGAAGACGTCTG 58.884 47.826 20.85 8.66 39.49 3.51
532 533 4.382040 CCCATCAACTATGAAGACGTCTGT 60.382 45.833 20.85 9.39 39.49 3.41
533 534 4.564372 CCATCAACTATGAAGACGTCTGTG 59.436 45.833 20.85 10.04 39.49 3.66
534 535 5.402398 CATCAACTATGAAGACGTCTGTGA 58.598 41.667 20.85 13.53 39.49 3.58
535 536 5.644977 TCAACTATGAAGACGTCTGTGAT 57.355 39.130 20.85 13.43 30.99 3.06
536 537 5.402398 TCAACTATGAAGACGTCTGTGATG 58.598 41.667 20.85 12.15 30.99 3.07
537 538 5.183140 TCAACTATGAAGACGTCTGTGATGA 59.817 40.000 20.85 13.93 30.99 2.92
538 539 5.843673 ACTATGAAGACGTCTGTGATGAT 57.156 39.130 20.85 5.47 0.00 2.45
539 540 6.214191 ACTATGAAGACGTCTGTGATGATT 57.786 37.500 20.85 0.00 0.00 2.57
540 541 6.269315 ACTATGAAGACGTCTGTGATGATTC 58.731 40.000 20.85 10.69 0.00 2.52
541 542 3.501950 TGAAGACGTCTGTGATGATTCG 58.498 45.455 20.85 0.00 0.00 3.34
542 543 3.057526 TGAAGACGTCTGTGATGATTCGT 60.058 43.478 20.85 0.00 0.00 3.85
543 544 3.577649 AGACGTCTGTGATGATTCGTT 57.422 42.857 19.30 0.00 0.00 3.85
544 545 4.696899 AGACGTCTGTGATGATTCGTTA 57.303 40.909 19.30 0.00 0.00 3.18
545 546 5.055642 AGACGTCTGTGATGATTCGTTAA 57.944 39.130 19.30 0.00 0.00 2.01
546 547 5.651530 AGACGTCTGTGATGATTCGTTAAT 58.348 37.500 19.30 0.00 0.00 1.40
547 548 5.744345 AGACGTCTGTGATGATTCGTTAATC 59.256 40.000 19.30 0.00 41.69 1.75
548 549 5.651530 ACGTCTGTGATGATTCGTTAATCT 58.348 37.500 0.00 0.00 41.83 2.40
549 550 5.744345 ACGTCTGTGATGATTCGTTAATCTC 59.256 40.000 0.00 0.00 41.83 2.75
550 551 5.743872 CGTCTGTGATGATTCGTTAATCTCA 59.256 40.000 0.00 0.00 41.83 3.27
551 552 6.253512 CGTCTGTGATGATTCGTTAATCTCAA 59.746 38.462 0.00 0.00 41.83 3.02
552 553 7.201435 CGTCTGTGATGATTCGTTAATCTCAAA 60.201 37.037 0.00 0.00 41.83 2.69
553 554 8.443160 GTCTGTGATGATTCGTTAATCTCAAAA 58.557 33.333 0.00 0.00 41.83 2.44
554 555 9.166173 TCTGTGATGATTCGTTAATCTCAAAAT 57.834 29.630 0.00 0.00 41.83 1.82
563 564 9.702726 ATTCGTTAATCTCAAAATAATGTGTCG 57.297 29.630 0.00 0.00 0.00 4.35
564 565 8.468720 TCGTTAATCTCAAAATAATGTGTCGA 57.531 30.769 0.00 0.00 0.00 4.20
565 566 9.093970 TCGTTAATCTCAAAATAATGTGTCGAT 57.906 29.630 0.00 0.00 0.00 3.59
566 567 9.702726 CGTTAATCTCAAAATAATGTGTCGATT 57.297 29.630 0.00 0.00 0.00 3.34
581 582 9.840427 AATGTGTCGATTTAATCTTTCGAAAAT 57.160 25.926 12.41 5.97 42.82 1.82
582 583 8.653984 TGTGTCGATTTAATCTTTCGAAAATG 57.346 30.769 12.41 1.25 42.82 2.32
583 584 7.270365 TGTGTCGATTTAATCTTTCGAAAATGC 59.730 33.333 12.41 0.00 42.82 3.56
584 585 7.481798 GTGTCGATTTAATCTTTCGAAAATGCT 59.518 33.333 12.41 0.00 42.82 3.79
585 586 7.692291 TGTCGATTTAATCTTTCGAAAATGCTC 59.308 33.333 12.41 2.46 42.82 4.26
586 587 7.692291 GTCGATTTAATCTTTCGAAAATGCTCA 59.308 33.333 12.41 0.00 42.82 4.26
587 588 8.397906 TCGATTTAATCTTTCGAAAATGCTCAT 58.602 29.630 12.41 0.90 38.80 2.90
588 589 9.650371 CGATTTAATCTTTCGAAAATGCTCATA 57.350 29.630 12.41 0.00 34.92 2.15
590 591 9.956720 ATTTAATCTTTCGAAAATGCTCATAGG 57.043 29.630 12.41 0.00 0.00 2.57
591 592 6.382869 AATCTTTCGAAAATGCTCATAGGG 57.617 37.500 12.41 0.00 0.00 3.53
592 593 4.843728 TCTTTCGAAAATGCTCATAGGGT 58.156 39.130 12.41 0.00 0.00 4.34
593 594 5.984725 TCTTTCGAAAATGCTCATAGGGTA 58.015 37.500 12.41 0.00 0.00 3.69
594 595 6.049149 TCTTTCGAAAATGCTCATAGGGTAG 58.951 40.000 12.41 0.00 0.00 3.18
595 596 4.336889 TCGAAAATGCTCATAGGGTAGG 57.663 45.455 0.00 0.00 0.00 3.18
596 597 2.808543 CGAAAATGCTCATAGGGTAGGC 59.191 50.000 0.00 0.00 0.00 3.93
597 598 2.959465 AAATGCTCATAGGGTAGGCC 57.041 50.000 0.00 0.00 0.00 5.19
598 599 0.687354 AATGCTCATAGGGTAGGCCG 59.313 55.000 0.00 0.00 34.97 6.13
599 600 0.471971 ATGCTCATAGGGTAGGCCGT 60.472 55.000 0.00 0.00 36.71 5.68
600 601 1.367840 GCTCATAGGGTAGGCCGTG 59.632 63.158 0.00 0.00 34.32 4.94
601 602 2.050269 CTCATAGGGTAGGCCGTGG 58.950 63.158 0.00 0.00 34.32 4.94
602 603 1.458777 TCATAGGGTAGGCCGTGGG 60.459 63.158 0.00 0.00 34.32 4.61
603 604 1.764854 CATAGGGTAGGCCGTGGGT 60.765 63.158 0.00 0.00 34.32 4.51
604 605 0.470456 CATAGGGTAGGCCGTGGGTA 60.470 60.000 0.00 0.00 34.32 3.69
605 606 0.470645 ATAGGGTAGGCCGTGGGTAC 60.471 60.000 0.00 0.00 34.32 3.34
606 607 1.873178 TAGGGTAGGCCGTGGGTACA 61.873 60.000 0.00 0.00 34.32 2.90
607 608 2.068213 GGGTAGGCCGTGGGTACAT 61.068 63.158 0.00 0.00 34.97 2.29
608 609 0.760189 GGGTAGGCCGTGGGTACATA 60.760 60.000 0.00 0.00 34.97 2.29
609 610 1.345063 GGTAGGCCGTGGGTACATAT 58.655 55.000 0.00 0.00 0.00 1.78
610 611 1.001633 GGTAGGCCGTGGGTACATATG 59.998 57.143 0.00 0.00 0.00 1.78
611 612 1.965643 GTAGGCCGTGGGTACATATGA 59.034 52.381 10.38 0.00 0.00 2.15
612 613 0.756903 AGGCCGTGGGTACATATGAC 59.243 55.000 10.38 3.34 0.00 3.06
613 614 0.756903 GGCCGTGGGTACATATGACT 59.243 55.000 10.38 0.00 0.00 3.41
614 615 1.140252 GGCCGTGGGTACATATGACTT 59.860 52.381 10.38 0.00 0.00 3.01
615 616 2.420967 GGCCGTGGGTACATATGACTTT 60.421 50.000 10.38 0.00 0.00 2.66
616 617 2.870411 GCCGTGGGTACATATGACTTTC 59.130 50.000 10.38 0.00 0.00 2.62
617 618 3.680475 GCCGTGGGTACATATGACTTTCA 60.680 47.826 10.38 0.00 0.00 2.69
618 619 4.119862 CCGTGGGTACATATGACTTTCAG 58.880 47.826 10.38 0.00 0.00 3.02
619 620 4.142026 CCGTGGGTACATATGACTTTCAGA 60.142 45.833 10.38 0.00 0.00 3.27
620 621 5.043903 CGTGGGTACATATGACTTTCAGAG 58.956 45.833 10.38 0.00 0.00 3.35
621 622 5.163550 CGTGGGTACATATGACTTTCAGAGA 60.164 44.000 10.38 0.00 0.00 3.10
622 623 6.276847 GTGGGTACATATGACTTTCAGAGAG 58.723 44.000 10.38 0.00 0.00 3.20
623 624 5.363868 TGGGTACATATGACTTTCAGAGAGG 59.636 44.000 10.38 0.00 0.00 3.69
624 625 5.293560 GGTACATATGACTTTCAGAGAGGC 58.706 45.833 10.38 0.00 0.00 4.70
625 626 4.052159 ACATATGACTTTCAGAGAGGCG 57.948 45.455 10.38 0.00 0.00 5.52
626 627 3.701542 ACATATGACTTTCAGAGAGGCGA 59.298 43.478 10.38 0.00 0.00 5.54
627 628 2.957491 ATGACTTTCAGAGAGGCGAG 57.043 50.000 0.00 0.00 0.00 5.03
628 629 1.621992 TGACTTTCAGAGAGGCGAGT 58.378 50.000 0.00 0.00 0.00 4.18
629 630 1.270826 TGACTTTCAGAGAGGCGAGTG 59.729 52.381 0.00 0.00 0.00 3.51
630 631 1.271102 GACTTTCAGAGAGGCGAGTGT 59.729 52.381 0.00 0.00 0.00 3.55
631 632 2.488545 GACTTTCAGAGAGGCGAGTGTA 59.511 50.000 0.00 0.00 0.00 2.90
632 633 3.093057 ACTTTCAGAGAGGCGAGTGTAT 58.907 45.455 0.00 0.00 0.00 2.29
633 634 3.119316 ACTTTCAGAGAGGCGAGTGTATG 60.119 47.826 0.00 0.00 0.00 2.39
634 635 2.420058 TCAGAGAGGCGAGTGTATGA 57.580 50.000 0.00 0.00 0.00 2.15
635 636 2.293170 TCAGAGAGGCGAGTGTATGAG 58.707 52.381 0.00 0.00 0.00 2.90
636 637 1.028905 AGAGAGGCGAGTGTATGAGC 58.971 55.000 0.00 0.00 0.00 4.26
637 638 0.317436 GAGAGGCGAGTGTATGAGCG 60.317 60.000 0.00 0.00 0.00 5.03
640 641 2.202743 GCGAGTGTATGAGCGCCA 60.203 61.111 2.29 1.52 43.33 5.69
641 642 2.517450 GCGAGTGTATGAGCGCCAC 61.517 63.158 2.29 4.42 43.33 5.01
642 643 2.224217 CGAGTGTATGAGCGCCACG 61.224 63.158 2.29 0.00 34.34 4.94
643 644 1.138883 GAGTGTATGAGCGCCACGA 59.861 57.895 2.29 0.00 34.34 4.35
644 645 0.867753 GAGTGTATGAGCGCCACGAG 60.868 60.000 2.29 0.00 34.34 4.18
645 646 1.138883 GTGTATGAGCGCCACGAGA 59.861 57.895 2.29 0.00 0.00 4.04
646 647 1.138883 TGTATGAGCGCCACGAGAC 59.861 57.895 2.29 0.00 0.00 3.36
647 648 1.313091 TGTATGAGCGCCACGAGACT 61.313 55.000 2.29 0.00 0.00 3.24
648 649 0.592754 GTATGAGCGCCACGAGACTC 60.593 60.000 2.29 0.00 0.00 3.36
649 650 1.029947 TATGAGCGCCACGAGACTCA 61.030 55.000 2.29 0.00 42.89 3.41
650 651 1.877576 ATGAGCGCCACGAGACTCAA 61.878 55.000 2.29 0.00 42.08 3.02
651 652 1.372997 GAGCGCCACGAGACTCAAA 60.373 57.895 2.29 0.00 0.00 2.69
652 653 0.737715 GAGCGCCACGAGACTCAAAT 60.738 55.000 2.29 0.00 0.00 2.32
653 654 0.320771 AGCGCCACGAGACTCAAATT 60.321 50.000 2.29 0.00 0.00 1.82
654 655 0.517316 GCGCCACGAGACTCAAATTT 59.483 50.000 0.00 0.00 0.00 1.82
655 656 1.464189 GCGCCACGAGACTCAAATTTC 60.464 52.381 0.00 0.00 0.00 2.17
656 657 1.201812 CGCCACGAGACTCAAATTTCG 60.202 52.381 2.82 0.00 38.88 3.46
657 658 1.798813 GCCACGAGACTCAAATTTCGT 59.201 47.619 2.82 0.00 46.07 3.85
658 659 2.223377 GCCACGAGACTCAAATTTCGTT 59.777 45.455 2.82 0.00 42.99 3.85
659 660 3.799035 CCACGAGACTCAAATTTCGTTG 58.201 45.455 2.82 0.00 42.99 4.10
660 661 3.218398 CACGAGACTCAAATTTCGTTGC 58.782 45.455 2.82 0.00 42.99 4.17
661 662 2.869801 ACGAGACTCAAATTTCGTTGCA 59.130 40.909 2.82 0.00 42.99 4.08
662 663 3.311322 ACGAGACTCAAATTTCGTTGCAA 59.689 39.130 2.82 0.00 42.99 4.08
663 664 4.024048 ACGAGACTCAAATTTCGTTGCAAT 60.024 37.500 0.59 0.00 42.99 3.56
664 665 4.911610 CGAGACTCAAATTTCGTTGCAATT 59.088 37.500 0.59 0.00 0.00 2.32
665 666 5.164254 CGAGACTCAAATTTCGTTGCAATTG 60.164 40.000 0.59 0.00 0.00 2.32
666 667 5.591099 AGACTCAAATTTCGTTGCAATTGT 58.409 33.333 0.59 0.00 0.00 2.71
667 668 6.042143 AGACTCAAATTTCGTTGCAATTGTT 58.958 32.000 0.59 0.00 0.00 2.83
668 669 6.534793 AGACTCAAATTTCGTTGCAATTGTTT 59.465 30.769 0.59 0.00 0.00 2.83
669 670 6.704819 ACTCAAATTTCGTTGCAATTGTTTC 58.295 32.000 0.59 0.00 0.00 2.78
670 671 6.042144 TCAAATTTCGTTGCAATTGTTTCC 57.958 33.333 0.59 0.00 0.00 3.13
671 672 4.707210 AATTTCGTTGCAATTGTTTCCG 57.293 36.364 0.59 0.00 0.00 4.30
672 673 3.422417 TTTCGTTGCAATTGTTTCCGA 57.578 38.095 0.59 1.67 0.00 4.55
673 674 3.422417 TTCGTTGCAATTGTTTCCGAA 57.578 38.095 12.89 12.89 0.00 4.30
674 675 2.722071 TCGTTGCAATTGTTTCCGAAC 58.278 42.857 0.59 0.96 36.29 3.95
675 676 2.097629 TCGTTGCAATTGTTTCCGAACA 59.902 40.909 0.59 0.00 43.73 3.18
687 688 4.569162 TGTTTCCGAACAACTCTTGTACTG 59.431 41.667 0.00 0.00 44.59 2.74
775 785 1.352622 TTTGTGAGCTGTGGGTCCCT 61.353 55.000 10.00 0.00 39.02 4.20
1293 1333 3.391296 TCTGCTTCCACCTGTTAGTCTTT 59.609 43.478 0.00 0.00 0.00 2.52
1300 1340 4.410883 TCCACCTGTTAGTCTTTCTGGAAA 59.589 41.667 6.81 0.00 0.00 3.13
1329 1369 2.412847 GCAGTGCTGGATTGTTTACGAC 60.413 50.000 8.18 0.00 0.00 4.34
1337 1377 5.041951 TGGATTGTTTACGACTTTCATGC 57.958 39.130 0.00 0.00 0.00 4.06
1521 1561 1.635844 TGGAATAGCTTGTACGCACG 58.364 50.000 0.00 0.00 0.00 5.34
1540 1581 2.890311 ACGTTTTGAGGCCATTTCATCA 59.110 40.909 5.01 0.00 0.00 3.07
1618 1659 7.809331 TGTTGTCTTGTGCAATCTAAATCAATC 59.191 33.333 0.00 0.00 0.00 2.67
1641 1683 3.009916 AGTTCTACCACGAGTCTCCCTAA 59.990 47.826 0.00 0.00 0.00 2.69
1672 1714 8.244802 AGTTGTAACATGACTAGTACATGAGTC 58.755 37.037 27.55 19.75 45.22 3.36
1686 1728 2.768253 TGAGTCCATGGTGCTTAGTG 57.232 50.000 12.58 0.00 0.00 2.74
1704 1746 6.533367 GCTTAGTGACTTACTCTGGAATTCAG 59.467 42.308 7.93 3.37 44.68 3.02
1712 1754 6.272558 ACTTACTCTGGAATTCAGTTAACCCT 59.727 38.462 7.93 0.00 43.76 4.34
1775 1817 3.627492 GGAAAGGGCTAGGGTTTGCTTAT 60.627 47.826 0.00 0.00 0.00 1.73
1889 1933 1.770061 TCCTACTTTGGTGTTCCCGTT 59.230 47.619 0.00 0.00 35.15 4.44
1925 1969 1.562475 GTAGGGGGTTATGGTCAGCAA 59.438 52.381 0.00 0.00 0.00 3.91
1943 1987 0.682852 AACGACCACTTCCGATTGGA 59.317 50.000 0.00 0.00 44.61 3.53
1989 2033 5.183228 CGGTTCCACAATACAGGTAAGATT 58.817 41.667 0.00 0.00 0.00 2.40
2079 2162 5.503662 TGTAATGCTATCAAACTGGCATG 57.496 39.130 0.00 0.00 41.81 4.06
2111 2194 8.596380 CGAAGTATTTAGAAGTTCCATCTTGTC 58.404 37.037 0.00 0.00 0.00 3.18
2257 2342 6.528321 ACTGGTTTTAACTACCAAGGTACTC 58.472 40.000 9.32 0.00 44.63 2.59
2259 2344 5.221904 TGGTTTTAACTACCAAGGTACTCCC 60.222 44.000 6.23 0.00 42.50 4.30
2263 2348 3.103080 ACTACCAAGGTACTCCCTCTG 57.897 52.381 0.00 0.00 45.47 3.35
2319 2404 9.372369 ACTTTAGTGATCTAAATGCTCTTGTAC 57.628 33.333 0.00 0.00 42.75 2.90
2322 2407 9.944376 TTAGTGATCTAAATGCTCTTGTACTTT 57.056 29.630 0.00 0.00 33.79 2.66
2324 2409 9.372369 AGTGATCTAAATGCTCTTGTACTTTAC 57.628 33.333 0.00 0.00 0.00 2.01
2337 2426 5.886960 TGTACTTTACGAGGGAGTACTTC 57.113 43.478 17.17 0.00 43.73 3.01
2395 2484 3.435846 TGCAACCATCCTCTGCAAA 57.564 47.368 0.00 0.00 42.84 3.68
2396 2485 1.250328 TGCAACCATCCTCTGCAAAG 58.750 50.000 0.00 0.00 42.84 2.77
2409 2498 6.769512 TCCTCTGCAAAGTATTTTGTCTAGT 58.230 36.000 11.77 0.00 44.41 2.57
2484 2573 4.353737 CAGATGTATTTGATTTGCCCACG 58.646 43.478 0.00 0.00 0.00 4.94
2532 2627 3.766591 CCCTCGTTAGCCATCTATCATCT 59.233 47.826 0.00 0.00 0.00 2.90
2553 2653 1.229984 CCCACTCCCCTCTTTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
2568 2668 5.972935 TCTTTCCCTTGTTCCTTTGAAAAC 58.027 37.500 0.00 0.00 30.79 2.43
2577 2677 7.224557 CCTTGTTCCTTTGAAAACGATCAAATT 59.775 33.333 13.27 0.00 45.45 1.82
3101 3201 7.757173 GCCTTCTTTTCCATCATAAAGAAAGAC 59.243 37.037 10.21 1.85 44.92 3.01
3371 3597 4.152045 CAGACTAAAGAGCAAGCTGAACTG 59.848 45.833 0.00 0.00 0.00 3.16
3378 3604 1.656441 CAAGCTGAACTGTGCACCC 59.344 57.895 15.69 1.47 0.00 4.61
3379 3605 1.529244 AAGCTGAACTGTGCACCCC 60.529 57.895 15.69 1.09 0.00 4.95
3416 3642 3.679389 TGAGGTTTGCTTTCTCTGGATC 58.321 45.455 0.00 0.00 0.00 3.36
3444 3670 1.191096 CTTGTTTGCGTGTTGACTGC 58.809 50.000 0.00 0.00 0.00 4.40
3622 3849 4.769688 TCCTTGCATTCATCGATTAGTGT 58.230 39.130 0.00 0.00 0.00 3.55
3675 3902 0.248289 GCCCATTTGAGCATGCTTGT 59.752 50.000 23.61 0.00 0.00 3.16
3844 4071 4.532126 TGTACCTGGAGATCATGAACTGTT 59.468 41.667 10.61 0.00 0.00 3.16
3848 4075 2.093500 TGGAGATCATGAACTGTTCCGG 60.093 50.000 17.26 9.65 0.00 5.14
3859 4086 4.041762 GTTCCGGTGGATGGGGCA 62.042 66.667 0.00 0.00 0.00 5.36
3925 4152 2.214057 ATCCTGTCCTGGTGGGGGAT 62.214 60.000 0.00 0.92 35.15 3.85
3941 4168 2.550978 GGGATTGTGATCGTCGATGTT 58.449 47.619 13.54 0.00 32.84 2.71
3952 4179 4.625972 TCGTCGATGTTTAGATACAGCA 57.374 40.909 4.21 0.00 34.20 4.41
3953 4180 5.183014 TCGTCGATGTTTAGATACAGCAT 57.817 39.130 4.21 0.00 34.20 3.79
3954 4181 5.588240 TCGTCGATGTTTAGATACAGCATT 58.412 37.500 4.21 0.00 34.20 3.56
4018 4245 2.777536 TGGAATGGAGTCCAGCACT 58.222 52.632 18.69 1.66 42.97 4.40
4107 4334 2.034104 TTGATGGCACTGAGATGAGC 57.966 50.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.463944 ACGCCTACAAGGTATGTATTGC 58.536 45.455 0.00 0.00 43.42 3.56
1 2 6.128117 ACAAAACGCCTACAAGGTATGTATTG 60.128 38.462 0.00 0.00 43.42 1.90
2 3 5.941647 ACAAAACGCCTACAAGGTATGTATT 59.058 36.000 0.00 0.00 43.42 1.89
3 4 5.493809 ACAAAACGCCTACAAGGTATGTAT 58.506 37.500 0.00 0.00 43.42 2.29
4 5 4.897140 ACAAAACGCCTACAAGGTATGTA 58.103 39.130 0.00 0.00 43.63 2.29
5 6 3.746940 ACAAAACGCCTACAAGGTATGT 58.253 40.909 0.00 0.00 46.36 2.29
6 7 3.749088 TGACAAAACGCCTACAAGGTATG 59.251 43.478 0.00 0.00 37.80 2.39
7 8 4.010667 TGACAAAACGCCTACAAGGTAT 57.989 40.909 0.00 0.00 37.80 2.73
8 9 3.472283 TGACAAAACGCCTACAAGGTA 57.528 42.857 0.00 0.00 37.80 3.08
9 10 2.335316 TGACAAAACGCCTACAAGGT 57.665 45.000 0.00 0.00 37.80 3.50
10 11 3.368495 GTTTGACAAAACGCCTACAAGG 58.632 45.455 1.27 0.00 36.60 3.61
66 67 4.373116 TCGTCCCAGGAACAGCGC 62.373 66.667 0.00 0.00 0.00 5.92
67 68 2.432628 GTCGTCCCAGGAACAGCG 60.433 66.667 0.00 0.00 0.00 5.18
68 69 2.432628 CGTCGTCCCAGGAACAGC 60.433 66.667 0.00 0.00 0.00 4.40
69 70 2.214181 CTCCGTCGTCCCAGGAACAG 62.214 65.000 0.00 0.00 33.10 3.16
70 71 2.203523 TCCGTCGTCCCAGGAACA 60.204 61.111 0.00 0.00 0.00 3.18
71 72 2.572284 CTCCGTCGTCCCAGGAAC 59.428 66.667 0.00 0.00 33.10 3.62
72 73 2.678934 CCTCCGTCGTCCCAGGAA 60.679 66.667 0.00 0.00 33.10 3.36
98 99 3.962421 CTCCTAGTACCGCCGGCG 61.962 72.222 41.00 41.00 39.44 6.46
99 100 3.603671 CCTCCTAGTACCGCCGGC 61.604 72.222 19.07 19.07 0.00 6.13
100 101 2.910994 CCCTCCTAGTACCGCCGG 60.911 72.222 0.00 0.00 0.00 6.13
101 102 2.710237 ATCCCCTCCTAGTACCGCCG 62.710 65.000 0.00 0.00 0.00 6.46
102 103 1.155624 ATCCCCTCCTAGTACCGCC 59.844 63.158 0.00 0.00 0.00 6.13
103 104 1.186267 CCATCCCCTCCTAGTACCGC 61.186 65.000 0.00 0.00 0.00 5.68
104 105 0.542232 CCCATCCCCTCCTAGTACCG 60.542 65.000 0.00 0.00 0.00 4.02
105 106 0.836830 GCCCATCCCCTCCTAGTACC 60.837 65.000 0.00 0.00 0.00 3.34
106 107 1.186267 CGCCCATCCCCTCCTAGTAC 61.186 65.000 0.00 0.00 0.00 2.73
107 108 1.155390 CGCCCATCCCCTCCTAGTA 59.845 63.158 0.00 0.00 0.00 1.82
108 109 2.122813 CGCCCATCCCCTCCTAGT 60.123 66.667 0.00 0.00 0.00 2.57
109 110 2.925170 CCGCCCATCCCCTCCTAG 60.925 72.222 0.00 0.00 0.00 3.02
110 111 2.965226 CTTCCGCCCATCCCCTCCTA 62.965 65.000 0.00 0.00 0.00 2.94
111 112 4.431524 TTCCGCCCATCCCCTCCT 62.432 66.667 0.00 0.00 0.00 3.69
112 113 3.878667 CTTCCGCCCATCCCCTCC 61.879 72.222 0.00 0.00 0.00 4.30
113 114 4.570874 GCTTCCGCCCATCCCCTC 62.571 72.222 0.00 0.00 0.00 4.30
141 142 3.249961 CTTCCCCGGCCTATCCCC 61.250 72.222 0.00 0.00 0.00 4.81
142 143 3.955044 GCTTCCCCGGCCTATCCC 61.955 72.222 0.00 0.00 0.00 3.85
143 144 3.955044 GGCTTCCCCGGCCTATCC 61.955 72.222 0.00 0.00 45.57 2.59
149 150 4.475135 GTCTCAGGCTTCCCCGGC 62.475 72.222 0.00 0.00 39.21 6.13
150 151 4.148825 CGTCTCAGGCTTCCCCGG 62.149 72.222 0.00 0.00 39.21 5.73
151 152 4.148825 CCGTCTCAGGCTTCCCCG 62.149 72.222 0.00 0.00 39.21 5.73
152 153 3.003763 ACCGTCTCAGGCTTCCCC 61.004 66.667 0.00 0.00 33.69 4.81
153 154 2.579738 GACCGTCTCAGGCTTCCC 59.420 66.667 0.00 0.00 33.69 3.97
154 155 2.182030 CGACCGTCTCAGGCTTCC 59.818 66.667 0.00 0.00 33.69 3.46
155 156 2.507324 GCGACCGTCTCAGGCTTC 60.507 66.667 0.00 0.00 33.69 3.86
156 157 4.070552 GGCGACCGTCTCAGGCTT 62.071 66.667 0.00 0.00 33.69 4.35
210 211 4.821589 CTCTCGCGCTTCCACCCC 62.822 72.222 5.56 0.00 0.00 4.95
211 212 4.821589 CCTCTCGCGCTTCCACCC 62.822 72.222 5.56 0.00 0.00 4.61
212 213 3.296709 TTCCTCTCGCGCTTCCACC 62.297 63.158 5.56 0.00 0.00 4.61
213 214 1.807573 CTTCCTCTCGCGCTTCCAC 60.808 63.158 5.56 0.00 0.00 4.02
214 215 1.938657 CTCTTCCTCTCGCGCTTCCA 61.939 60.000 5.56 0.00 0.00 3.53
215 216 1.226831 CTCTTCCTCTCGCGCTTCC 60.227 63.158 5.56 0.00 0.00 3.46
216 217 1.876263 GCTCTTCCTCTCGCGCTTC 60.876 63.158 5.56 0.00 0.00 3.86
217 218 2.183046 GCTCTTCCTCTCGCGCTT 59.817 61.111 5.56 0.00 0.00 4.68
218 219 4.186433 CGCTCTTCCTCTCGCGCT 62.186 66.667 5.56 0.00 39.11 5.92
220 221 4.560856 CCCGCTCTTCCTCTCGCG 62.561 72.222 0.00 0.00 44.69 5.87
221 222 4.882396 GCCCGCTCTTCCTCTCGC 62.882 72.222 0.00 0.00 0.00 5.03
222 223 4.560856 CGCCCGCTCTTCCTCTCG 62.561 72.222 0.00 0.00 0.00 4.04
223 224 4.882396 GCGCCCGCTCTTCCTCTC 62.882 72.222 5.27 0.00 38.26 3.20
265 266 2.041686 TATTTCGGGCGCCCACAAC 61.042 57.895 42.78 18.06 35.37 3.32
266 267 2.041686 GTATTTCGGGCGCCCACAA 61.042 57.895 42.78 33.30 35.37 3.33
267 268 2.437002 GTATTTCGGGCGCCCACA 60.437 61.111 42.78 27.55 35.37 4.17
268 269 3.569690 CGTATTTCGGGCGCCCAC 61.570 66.667 42.78 31.04 35.37 4.61
277 278 3.920553 CCCGCGCACCGTATTTCG 61.921 66.667 8.75 0.00 39.52 3.46
278 279 1.083242 TTACCCGCGCACCGTATTTC 61.083 55.000 8.75 0.00 34.38 2.17
279 280 0.462403 ATTACCCGCGCACCGTATTT 60.462 50.000 8.75 0.00 34.38 1.40
280 281 0.462403 AATTACCCGCGCACCGTATT 60.462 50.000 8.75 0.00 34.38 1.89
281 282 1.144496 AATTACCCGCGCACCGTAT 59.856 52.632 8.75 0.00 34.38 3.06
282 283 1.810441 CAATTACCCGCGCACCGTA 60.810 57.895 8.75 0.55 34.38 4.02
283 284 3.122323 CAATTACCCGCGCACCGT 61.122 61.111 8.75 1.68 34.38 4.83
284 285 2.190101 AAACAATTACCCGCGCACCG 62.190 55.000 8.75 0.00 0.00 4.94
285 286 0.038983 AAAACAATTACCCGCGCACC 60.039 50.000 8.75 0.00 0.00 5.01
286 287 1.453900 CAAAAACAATTACCCGCGCAC 59.546 47.619 8.75 0.00 0.00 5.34
287 288 1.337071 TCAAAAACAATTACCCGCGCA 59.663 42.857 8.75 0.00 0.00 6.09
288 289 1.717113 GTCAAAAACAATTACCCGCGC 59.283 47.619 0.00 0.00 0.00 6.86
289 290 2.321263 GGTCAAAAACAATTACCCGCG 58.679 47.619 0.00 0.00 0.00 6.46
290 291 2.321263 CGGTCAAAAACAATTACCCGC 58.679 47.619 0.00 0.00 0.00 6.13
291 292 2.321263 GCGGTCAAAAACAATTACCCG 58.679 47.619 0.00 0.00 37.29 5.28
292 293 2.321263 CGCGGTCAAAAACAATTACCC 58.679 47.619 0.00 0.00 0.00 3.69
293 294 1.717113 GCGCGGTCAAAAACAATTACC 59.283 47.619 8.83 0.00 0.00 2.85
294 295 1.380771 CGCGCGGTCAAAAACAATTAC 59.619 47.619 24.84 0.00 0.00 1.89
295 296 1.676057 CGCGCGGTCAAAAACAATTA 58.324 45.000 24.84 0.00 0.00 1.40
296 297 1.544777 GCGCGCGGTCAAAAACAATT 61.545 50.000 33.06 0.00 0.00 2.32
297 298 2.014018 GCGCGCGGTCAAAAACAAT 61.014 52.632 33.06 0.00 0.00 2.71
298 299 2.652496 GCGCGCGGTCAAAAACAA 60.652 55.556 33.06 0.00 0.00 2.83
299 300 4.615834 GGCGCGCGGTCAAAAACA 62.616 61.111 33.06 0.00 0.00 2.83
310 311 2.796245 CTAAAACAGGTTGGGCGCGC 62.796 60.000 25.94 25.94 0.00 6.86
311 312 1.209127 CTAAAACAGGTTGGGCGCG 59.791 57.895 0.00 0.00 0.00 6.86
312 313 1.080772 GCTAAAACAGGTTGGGCGC 60.081 57.895 0.00 0.00 0.00 6.53
313 314 1.209127 CGCTAAAACAGGTTGGGCG 59.791 57.895 4.08 4.08 35.54 6.13
314 315 1.080772 GCGCTAAAACAGGTTGGGC 60.081 57.895 0.00 0.00 0.00 5.36
315 316 1.209127 CGCGCTAAAACAGGTTGGG 59.791 57.895 5.56 0.00 0.00 4.12
316 317 1.442017 GCGCGCTAAAACAGGTTGG 60.442 57.895 26.67 0.00 0.00 3.77
317 318 1.792057 CGCGCGCTAAAACAGGTTG 60.792 57.895 30.48 4.48 0.00 3.77
318 319 2.554272 CGCGCGCTAAAACAGGTT 59.446 55.556 30.48 0.00 0.00 3.50
319 320 4.084888 GCGCGCGCTAAAACAGGT 62.085 61.111 44.38 0.00 38.26 4.00
378 379 1.477030 ATAGGTCGTTTTAGCGCGCG 61.477 55.000 28.44 28.44 0.00 6.86
379 380 0.648958 AATAGGTCGTTTTAGCGCGC 59.351 50.000 26.66 26.66 0.00 6.86
380 381 3.088552 CAAAATAGGTCGTTTTAGCGCG 58.911 45.455 0.00 0.00 0.00 6.86
381 382 2.844223 GCAAAATAGGTCGTTTTAGCGC 59.156 45.455 0.00 0.00 0.00 5.92
382 383 3.088552 CGCAAAATAGGTCGTTTTAGCG 58.911 45.455 0.00 0.00 38.42 4.26
383 384 3.422655 CCGCAAAATAGGTCGTTTTAGC 58.577 45.455 0.00 0.00 0.00 3.09
384 385 3.422655 GCCGCAAAATAGGTCGTTTTAG 58.577 45.455 0.00 0.00 0.00 1.85
385 386 2.159680 CGCCGCAAAATAGGTCGTTTTA 60.160 45.455 0.00 0.00 0.00 1.52
386 387 1.400500 CGCCGCAAAATAGGTCGTTTT 60.400 47.619 0.00 0.00 0.00 2.43
387 388 0.167251 CGCCGCAAAATAGGTCGTTT 59.833 50.000 0.00 0.00 0.00 3.60
388 389 1.791662 CGCCGCAAAATAGGTCGTT 59.208 52.632 0.00 0.00 0.00 3.85
389 390 2.746803 GCGCCGCAAAATAGGTCGT 61.747 57.895 3.15 0.00 32.51 4.34
390 391 2.022762 GCGCCGCAAAATAGGTCG 59.977 61.111 3.15 0.00 0.00 4.79
391 392 2.022762 CGCGCCGCAAAATAGGTC 59.977 61.111 10.75 0.00 0.00 3.85
392 393 3.505184 CCGCGCCGCAAAATAGGT 61.505 61.111 10.75 0.00 0.00 3.08
393 394 4.905193 GCCGCGCCGCAAAATAGG 62.905 66.667 15.97 1.30 0.00 2.57
412 413 0.370273 CAACAGCCGCGCTAAACTAG 59.630 55.000 5.56 0.00 36.40 2.57
413 414 1.017177 CCAACAGCCGCGCTAAACTA 61.017 55.000 5.56 0.00 36.40 2.24
414 415 2.325082 CCAACAGCCGCGCTAAACT 61.325 57.895 5.56 0.00 36.40 2.66
415 416 2.175811 CCAACAGCCGCGCTAAAC 59.824 61.111 5.56 0.00 36.40 2.01
416 417 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
417 418 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
418 419 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
419 420 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
420 421 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
421 422 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
422 423 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
423 424 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
434 435 7.381678 GCAGAAAAATCCAATCATTAGAGCATC 59.618 37.037 0.00 0.00 0.00 3.91
435 436 7.147794 TGCAGAAAAATCCAATCATTAGAGCAT 60.148 33.333 0.00 0.00 0.00 3.79
436 437 6.153170 TGCAGAAAAATCCAATCATTAGAGCA 59.847 34.615 0.00 0.00 0.00 4.26
437 438 6.567050 TGCAGAAAAATCCAATCATTAGAGC 58.433 36.000 0.00 0.00 0.00 4.09
438 439 9.595823 AAATGCAGAAAAATCCAATCATTAGAG 57.404 29.630 0.00 0.00 0.00 2.43
444 445 9.722184 TGAAATAAATGCAGAAAAATCCAATCA 57.278 25.926 0.00 0.00 0.00 2.57
447 448 8.505625 GCTTGAAATAAATGCAGAAAAATCCAA 58.494 29.630 0.00 0.00 0.00 3.53
448 449 7.879160 AGCTTGAAATAAATGCAGAAAAATCCA 59.121 29.630 0.00 0.00 0.00 3.41
449 450 8.260270 AGCTTGAAATAAATGCAGAAAAATCC 57.740 30.769 0.00 0.00 0.00 3.01
452 453 9.934190 GAAAAGCTTGAAATAAATGCAGAAAAA 57.066 25.926 0.00 0.00 0.00 1.94
453 454 8.274939 CGAAAAGCTTGAAATAAATGCAGAAAA 58.725 29.630 0.00 0.00 0.00 2.29
454 455 7.095691 CCGAAAAGCTTGAAATAAATGCAGAAA 60.096 33.333 0.00 0.00 0.00 2.52
455 456 6.365789 CCGAAAAGCTTGAAATAAATGCAGAA 59.634 34.615 0.00 0.00 0.00 3.02
456 457 5.863397 CCGAAAAGCTTGAAATAAATGCAGA 59.137 36.000 0.00 0.00 0.00 4.26
457 458 5.445010 GCCGAAAAGCTTGAAATAAATGCAG 60.445 40.000 0.00 0.00 0.00 4.41
458 459 4.388469 GCCGAAAAGCTTGAAATAAATGCA 59.612 37.500 0.00 0.00 0.00 3.96
459 460 4.490799 CGCCGAAAAGCTTGAAATAAATGC 60.491 41.667 0.00 0.00 0.00 3.56
460 461 4.856487 TCGCCGAAAAGCTTGAAATAAATG 59.144 37.500 0.00 0.00 0.00 2.32
461 462 5.054390 TCGCCGAAAAGCTTGAAATAAAT 57.946 34.783 0.00 0.00 0.00 1.40
462 463 4.491234 TCGCCGAAAAGCTTGAAATAAA 57.509 36.364 0.00 0.00 0.00 1.40
463 464 4.083003 ACATCGCCGAAAAGCTTGAAATAA 60.083 37.500 0.00 0.00 0.00 1.40
464 465 3.438781 ACATCGCCGAAAAGCTTGAAATA 59.561 39.130 0.00 0.00 0.00 1.40
465 466 2.228822 ACATCGCCGAAAAGCTTGAAAT 59.771 40.909 0.00 0.00 0.00 2.17
466 467 1.606668 ACATCGCCGAAAAGCTTGAAA 59.393 42.857 0.00 0.00 0.00 2.69
467 468 1.234821 ACATCGCCGAAAAGCTTGAA 58.765 45.000 0.00 0.00 0.00 2.69
468 469 2.087501 TACATCGCCGAAAAGCTTGA 57.912 45.000 0.00 0.00 0.00 3.02
469 470 2.095853 ACATACATCGCCGAAAAGCTTG 59.904 45.455 0.00 0.00 0.00 4.01
470 471 2.356135 ACATACATCGCCGAAAAGCTT 58.644 42.857 0.00 0.00 0.00 3.74
471 472 2.024176 ACATACATCGCCGAAAAGCT 57.976 45.000 0.00 0.00 0.00 3.74
472 473 2.095213 TGAACATACATCGCCGAAAAGC 59.905 45.455 0.00 0.00 0.00 3.51
473 474 3.370978 ACTGAACATACATCGCCGAAAAG 59.629 43.478 0.00 0.00 0.00 2.27
474 475 3.124466 CACTGAACATACATCGCCGAAAA 59.876 43.478 0.00 0.00 0.00 2.29
475 476 2.670905 CACTGAACATACATCGCCGAAA 59.329 45.455 0.00 0.00 0.00 3.46
476 477 2.267426 CACTGAACATACATCGCCGAA 58.733 47.619 0.00 0.00 0.00 4.30
477 478 1.470805 CCACTGAACATACATCGCCGA 60.471 52.381 0.00 0.00 0.00 5.54
478 479 0.930310 CCACTGAACATACATCGCCG 59.070 55.000 0.00 0.00 0.00 6.46
479 480 1.134521 TCCCACTGAACATACATCGCC 60.135 52.381 0.00 0.00 0.00 5.54
480 481 2.205074 CTCCCACTGAACATACATCGC 58.795 52.381 0.00 0.00 0.00 4.58
481 482 2.168521 ACCTCCCACTGAACATACATCG 59.831 50.000 0.00 0.00 0.00 3.84
482 483 3.535561 CACCTCCCACTGAACATACATC 58.464 50.000 0.00 0.00 0.00 3.06
483 484 2.239654 CCACCTCCCACTGAACATACAT 59.760 50.000 0.00 0.00 0.00 2.29
484 485 1.628340 CCACCTCCCACTGAACATACA 59.372 52.381 0.00 0.00 0.00 2.29
485 486 1.628846 ACCACCTCCCACTGAACATAC 59.371 52.381 0.00 0.00 0.00 2.39
486 487 1.628340 CACCACCTCCCACTGAACATA 59.372 52.381 0.00 0.00 0.00 2.29
487 488 0.401738 CACCACCTCCCACTGAACAT 59.598 55.000 0.00 0.00 0.00 2.71
488 489 0.986019 ACACCACCTCCCACTGAACA 60.986 55.000 0.00 0.00 0.00 3.18
489 490 0.182775 AACACCACCTCCCACTGAAC 59.817 55.000 0.00 0.00 0.00 3.18
490 491 0.472471 GAACACCACCTCCCACTGAA 59.528 55.000 0.00 0.00 0.00 3.02
491 492 1.415672 GGAACACCACCTCCCACTGA 61.416 60.000 0.00 0.00 0.00 3.41
492 493 1.073199 GGAACACCACCTCCCACTG 59.927 63.158 0.00 0.00 0.00 3.66
493 494 3.576232 GGAACACCACCTCCCACT 58.424 61.111 0.00 0.00 0.00 4.00
506 507 4.504858 ACGTCTTCATAGTTGATGGGAAC 58.495 43.478 0.00 0.00 36.08 3.62
507 508 4.466370 AGACGTCTTCATAGTTGATGGGAA 59.534 41.667 13.58 0.00 36.08 3.97
508 509 4.023980 AGACGTCTTCATAGTTGATGGGA 58.976 43.478 13.58 0.00 36.08 4.37
509 510 4.115516 CAGACGTCTTCATAGTTGATGGG 58.884 47.826 17.26 0.00 36.08 4.00
510 511 4.564372 CACAGACGTCTTCATAGTTGATGG 59.436 45.833 17.26 2.02 36.08 3.51
511 512 5.402398 TCACAGACGTCTTCATAGTTGATG 58.598 41.667 17.26 3.27 36.82 3.07
512 513 5.644977 TCACAGACGTCTTCATAGTTGAT 57.355 39.130 17.26 0.00 0.00 2.57
513 514 5.183140 TCATCACAGACGTCTTCATAGTTGA 59.817 40.000 17.26 9.03 0.00 3.18
514 515 5.402398 TCATCACAGACGTCTTCATAGTTG 58.598 41.667 17.26 5.42 0.00 3.16
515 516 5.644977 TCATCACAGACGTCTTCATAGTT 57.355 39.130 17.26 0.00 0.00 2.24
516 517 5.843673 ATCATCACAGACGTCTTCATAGT 57.156 39.130 17.26 7.57 0.00 2.12
517 518 5.397828 CGAATCATCACAGACGTCTTCATAG 59.602 44.000 17.26 6.83 0.00 2.23
518 519 5.163652 ACGAATCATCACAGACGTCTTCATA 60.164 40.000 17.26 1.99 0.00 2.15
519 520 4.108336 CGAATCATCACAGACGTCTTCAT 58.892 43.478 17.26 5.05 0.00 2.57
520 521 3.057526 ACGAATCATCACAGACGTCTTCA 60.058 43.478 17.26 2.50 0.00 3.02
521 522 3.502920 ACGAATCATCACAGACGTCTTC 58.497 45.455 17.26 7.46 0.00 2.87
522 523 3.577649 ACGAATCATCACAGACGTCTT 57.422 42.857 17.26 4.83 0.00 3.01
523 524 3.577649 AACGAATCATCACAGACGTCT 57.422 42.857 13.58 13.58 33.59 4.18
524 525 5.744345 AGATTAACGAATCATCACAGACGTC 59.256 40.000 7.70 7.70 43.51 4.34
525 526 5.651530 AGATTAACGAATCATCACAGACGT 58.348 37.500 0.00 0.00 43.51 4.34
526 527 5.743872 TGAGATTAACGAATCATCACAGACG 59.256 40.000 0.00 0.00 43.51 4.18
527 528 7.525688 TTGAGATTAACGAATCATCACAGAC 57.474 36.000 0.00 0.00 43.51 3.51
528 529 8.546597 TTTTGAGATTAACGAATCATCACAGA 57.453 30.769 0.00 0.00 43.51 3.41
537 538 9.702726 CGACACATTATTTTGAGATTAACGAAT 57.297 29.630 0.00 0.00 0.00 3.34
538 539 8.927721 TCGACACATTATTTTGAGATTAACGAA 58.072 29.630 0.00 0.00 0.00 3.85
539 540 8.468720 TCGACACATTATTTTGAGATTAACGA 57.531 30.769 0.00 0.00 0.00 3.85
540 541 9.702726 AATCGACACATTATTTTGAGATTAACG 57.297 29.630 0.00 0.00 0.00 3.18
555 556 9.840427 ATTTTCGAAAGATTAAATCGACACATT 57.160 25.926 10.98 0.00 44.39 2.71
556 557 9.277565 CATTTTCGAAAGATTAAATCGACACAT 57.722 29.630 10.98 0.00 44.39 3.21
557 558 7.270365 GCATTTTCGAAAGATTAAATCGACACA 59.730 33.333 10.98 0.00 44.39 3.72
558 559 7.481798 AGCATTTTCGAAAGATTAAATCGACAC 59.518 33.333 10.98 0.00 44.39 3.67
559 560 7.526608 AGCATTTTCGAAAGATTAAATCGACA 58.473 30.769 10.98 0.00 44.39 4.35
560 561 7.692291 TGAGCATTTTCGAAAGATTAAATCGAC 59.308 33.333 10.98 0.00 44.39 4.20
561 562 7.747888 TGAGCATTTTCGAAAGATTAAATCGA 58.252 30.769 10.98 0.00 43.18 3.59
562 563 7.953305 TGAGCATTTTCGAAAGATTAAATCG 57.047 32.000 10.98 0.00 41.60 3.34
564 565 9.956720 CCTATGAGCATTTTCGAAAGATTAAAT 57.043 29.630 10.98 5.71 41.60 1.40
565 566 8.405531 CCCTATGAGCATTTTCGAAAGATTAAA 58.594 33.333 10.98 0.00 41.60 1.52
566 567 7.556275 ACCCTATGAGCATTTTCGAAAGATTAA 59.444 33.333 10.98 0.00 41.60 1.40
567 568 7.054124 ACCCTATGAGCATTTTCGAAAGATTA 58.946 34.615 10.98 0.00 41.60 1.75
568 569 5.888161 ACCCTATGAGCATTTTCGAAAGATT 59.112 36.000 10.98 0.00 41.60 2.40
569 570 5.440610 ACCCTATGAGCATTTTCGAAAGAT 58.559 37.500 10.98 0.00 41.60 2.40
570 571 4.843728 ACCCTATGAGCATTTTCGAAAGA 58.156 39.130 10.98 3.16 39.20 2.52
571 572 5.237344 CCTACCCTATGAGCATTTTCGAAAG 59.763 44.000 10.98 1.62 0.00 2.62
572 573 5.123227 CCTACCCTATGAGCATTTTCGAAA 58.877 41.667 6.47 6.47 0.00 3.46
573 574 4.703897 CCTACCCTATGAGCATTTTCGAA 58.296 43.478 0.00 0.00 0.00 3.71
574 575 3.494398 GCCTACCCTATGAGCATTTTCGA 60.494 47.826 0.00 0.00 0.00 3.71
575 576 2.808543 GCCTACCCTATGAGCATTTTCG 59.191 50.000 0.00 0.00 0.00 3.46
576 577 3.149981 GGCCTACCCTATGAGCATTTTC 58.850 50.000 0.00 0.00 0.00 2.29
577 578 2.487265 CGGCCTACCCTATGAGCATTTT 60.487 50.000 0.00 0.00 0.00 1.82
578 579 1.072331 CGGCCTACCCTATGAGCATTT 59.928 52.381 0.00 0.00 0.00 2.32
579 580 0.687354 CGGCCTACCCTATGAGCATT 59.313 55.000 0.00 0.00 0.00 3.56
580 581 0.471971 ACGGCCTACCCTATGAGCAT 60.472 55.000 0.00 0.00 0.00 3.79
581 582 1.075525 ACGGCCTACCCTATGAGCA 60.076 57.895 0.00 0.00 0.00 4.26
582 583 1.367840 CACGGCCTACCCTATGAGC 59.632 63.158 0.00 0.00 0.00 4.26
583 584 1.472662 CCCACGGCCTACCCTATGAG 61.473 65.000 0.00 0.00 0.00 2.90
584 585 1.458777 CCCACGGCCTACCCTATGA 60.459 63.158 0.00 0.00 0.00 2.15
585 586 0.470456 TACCCACGGCCTACCCTATG 60.470 60.000 0.00 0.00 0.00 2.23
586 587 0.470645 GTACCCACGGCCTACCCTAT 60.471 60.000 0.00 0.00 0.00 2.57
587 588 1.076044 GTACCCACGGCCTACCCTA 60.076 63.158 0.00 0.00 0.00 3.53
588 589 2.364710 GTACCCACGGCCTACCCT 60.365 66.667 0.00 0.00 0.00 4.34
589 590 0.760189 TATGTACCCACGGCCTACCC 60.760 60.000 0.00 0.00 0.00 3.69
590 591 1.001633 CATATGTACCCACGGCCTACC 59.998 57.143 0.00 0.00 0.00 3.18
591 592 1.965643 TCATATGTACCCACGGCCTAC 59.034 52.381 0.00 0.00 0.00 3.18
592 593 1.965643 GTCATATGTACCCACGGCCTA 59.034 52.381 0.00 0.00 0.00 3.93
593 594 0.756903 GTCATATGTACCCACGGCCT 59.243 55.000 0.00 0.00 0.00 5.19
594 595 0.756903 AGTCATATGTACCCACGGCC 59.243 55.000 1.90 0.00 0.00 6.13
595 596 2.614829 AAGTCATATGTACCCACGGC 57.385 50.000 1.90 0.00 0.00 5.68
596 597 4.119862 CTGAAAGTCATATGTACCCACGG 58.880 47.826 1.90 0.00 0.00 4.94
597 598 5.006153 TCTGAAAGTCATATGTACCCACG 57.994 43.478 1.90 0.00 33.76 4.94
598 599 6.222038 TCTCTGAAAGTCATATGTACCCAC 57.778 41.667 1.90 0.00 33.76 4.61
599 600 5.363868 CCTCTCTGAAAGTCATATGTACCCA 59.636 44.000 1.90 0.00 33.76 4.51
600 601 5.740513 GCCTCTCTGAAAGTCATATGTACCC 60.741 48.000 1.90 0.00 33.76 3.69
601 602 5.293560 GCCTCTCTGAAAGTCATATGTACC 58.706 45.833 1.90 0.00 33.76 3.34
602 603 4.979197 CGCCTCTCTGAAAGTCATATGTAC 59.021 45.833 1.90 0.16 33.76 2.90
603 604 4.887655 TCGCCTCTCTGAAAGTCATATGTA 59.112 41.667 1.90 0.00 33.76 2.29
604 605 3.701542 TCGCCTCTCTGAAAGTCATATGT 59.298 43.478 1.90 0.00 33.76 2.29
605 606 4.202101 ACTCGCCTCTCTGAAAGTCATATG 60.202 45.833 0.00 0.00 33.76 1.78
606 607 3.957497 ACTCGCCTCTCTGAAAGTCATAT 59.043 43.478 0.00 0.00 33.76 1.78
607 608 3.129462 CACTCGCCTCTCTGAAAGTCATA 59.871 47.826 0.00 0.00 33.76 2.15
608 609 2.094286 CACTCGCCTCTCTGAAAGTCAT 60.094 50.000 0.00 0.00 33.76 3.06
609 610 1.270826 CACTCGCCTCTCTGAAAGTCA 59.729 52.381 0.00 0.00 33.76 3.41
610 611 1.271102 ACACTCGCCTCTCTGAAAGTC 59.729 52.381 0.00 0.00 33.76 3.01
611 612 1.333177 ACACTCGCCTCTCTGAAAGT 58.667 50.000 0.00 0.00 33.76 2.66
612 613 3.129462 TCATACACTCGCCTCTCTGAAAG 59.871 47.826 0.00 0.00 0.00 2.62
613 614 3.089284 TCATACACTCGCCTCTCTGAAA 58.911 45.455 0.00 0.00 0.00 2.69
614 615 2.685388 CTCATACACTCGCCTCTCTGAA 59.315 50.000 0.00 0.00 0.00 3.02
615 616 2.293170 CTCATACACTCGCCTCTCTGA 58.707 52.381 0.00 0.00 0.00 3.27
616 617 1.268999 GCTCATACACTCGCCTCTCTG 60.269 57.143 0.00 0.00 0.00 3.35
617 618 1.028905 GCTCATACACTCGCCTCTCT 58.971 55.000 0.00 0.00 0.00 3.10
618 619 0.317436 CGCTCATACACTCGCCTCTC 60.317 60.000 0.00 0.00 0.00 3.20
619 620 1.730487 CGCTCATACACTCGCCTCT 59.270 57.895 0.00 0.00 0.00 3.69
620 621 1.946650 GCGCTCATACACTCGCCTC 60.947 63.158 0.00 0.00 41.53 4.70
621 622 2.105128 GCGCTCATACACTCGCCT 59.895 61.111 0.00 0.00 41.53 5.52
623 624 2.202743 TGGCGCTCATACACTCGC 60.203 61.111 7.64 0.00 45.99 5.03
624 625 2.224217 CGTGGCGCTCATACACTCG 61.224 63.158 7.64 0.00 33.13 4.18
625 626 0.867753 CTCGTGGCGCTCATACACTC 60.868 60.000 7.64 0.00 33.13 3.51
626 627 1.139734 CTCGTGGCGCTCATACACT 59.860 57.895 7.64 0.00 33.13 3.55
627 628 1.138883 TCTCGTGGCGCTCATACAC 59.861 57.895 7.64 5.41 0.00 2.90
628 629 1.138883 GTCTCGTGGCGCTCATACA 59.861 57.895 7.64 0.00 0.00 2.29
629 630 0.592754 GAGTCTCGTGGCGCTCATAC 60.593 60.000 7.64 0.72 0.00 2.39
630 631 1.029947 TGAGTCTCGTGGCGCTCATA 61.030 55.000 7.64 0.00 33.62 2.15
631 632 1.877576 TTGAGTCTCGTGGCGCTCAT 61.878 55.000 7.64 0.00 37.74 2.90
632 633 2.082629 TTTGAGTCTCGTGGCGCTCA 62.083 55.000 7.64 0.00 36.35 4.26
633 634 0.737715 ATTTGAGTCTCGTGGCGCTC 60.738 55.000 7.64 0.00 0.00 5.03
634 635 0.320771 AATTTGAGTCTCGTGGCGCT 60.321 50.000 7.64 0.00 0.00 5.92
635 636 0.517316 AAATTTGAGTCTCGTGGCGC 59.483 50.000 0.00 0.00 0.00 6.53
636 637 1.201812 CGAAATTTGAGTCTCGTGGCG 60.202 52.381 0.00 0.00 0.00 5.69
637 638 1.798813 ACGAAATTTGAGTCTCGTGGC 59.201 47.619 0.00 0.00 42.54 5.01
638 639 3.799035 CAACGAAATTTGAGTCTCGTGG 58.201 45.455 5.28 0.00 43.29 4.94
639 640 3.218398 GCAACGAAATTTGAGTCTCGTG 58.782 45.455 5.28 2.41 43.29 4.35
640 641 2.869801 TGCAACGAAATTTGAGTCTCGT 59.130 40.909 0.00 0.00 45.84 4.18
641 642 3.519908 TGCAACGAAATTTGAGTCTCG 57.480 42.857 0.00 0.00 37.33 4.04
642 643 5.687285 ACAATTGCAACGAAATTTGAGTCTC 59.313 36.000 13.60 0.00 0.00 3.36
643 644 5.591099 ACAATTGCAACGAAATTTGAGTCT 58.409 33.333 13.60 0.00 0.00 3.24
644 645 5.888412 ACAATTGCAACGAAATTTGAGTC 57.112 34.783 13.60 0.00 0.00 3.36
645 646 6.238076 GGAAACAATTGCAACGAAATTTGAGT 60.238 34.615 13.60 0.00 0.00 3.41
646 647 6.128729 GGAAACAATTGCAACGAAATTTGAG 58.871 36.000 13.60 0.00 0.00 3.02
647 648 5.276584 CGGAAACAATTGCAACGAAATTTGA 60.277 36.000 13.60 0.00 0.00 2.69
648 649 4.897362 CGGAAACAATTGCAACGAAATTTG 59.103 37.500 0.00 3.75 0.00 2.32
649 650 4.806247 TCGGAAACAATTGCAACGAAATTT 59.194 33.333 0.00 0.00 0.00 1.82
650 651 4.363999 TCGGAAACAATTGCAACGAAATT 58.636 34.783 0.00 0.00 0.00 1.82
651 652 3.971150 TCGGAAACAATTGCAACGAAAT 58.029 36.364 0.00 0.00 0.00 2.17
652 653 3.422417 TCGGAAACAATTGCAACGAAA 57.578 38.095 0.00 0.00 0.00 3.46
653 654 3.109619 GTTCGGAAACAATTGCAACGAA 58.890 40.909 17.89 17.89 35.36 3.85
654 655 2.097629 TGTTCGGAAACAATTGCAACGA 59.902 40.909 0.00 8.09 42.34 3.85
655 656 2.455032 TGTTCGGAAACAATTGCAACG 58.545 42.857 0.00 5.76 42.34 4.10
664 665 4.569162 CAGTACAAGAGTTGTTCGGAAACA 59.431 41.667 0.00 0.00 42.22 2.83
665 666 4.552184 GCAGTACAAGAGTTGTTCGGAAAC 60.552 45.833 0.00 0.00 42.22 2.78
666 667 3.558418 GCAGTACAAGAGTTGTTCGGAAA 59.442 43.478 0.00 0.00 42.22 3.13
667 668 3.128349 GCAGTACAAGAGTTGTTCGGAA 58.872 45.455 0.00 0.00 42.22 4.30
668 669 2.547218 GGCAGTACAAGAGTTGTTCGGA 60.547 50.000 0.00 0.00 42.22 4.55
669 670 1.798813 GGCAGTACAAGAGTTGTTCGG 59.201 52.381 0.00 0.00 42.22 4.30
670 671 2.221055 GTGGCAGTACAAGAGTTGTTCG 59.779 50.000 0.00 0.00 42.22 3.95
671 672 3.202906 TGTGGCAGTACAAGAGTTGTTC 58.797 45.455 0.00 0.00 42.22 3.18
672 673 3.206150 CTGTGGCAGTACAAGAGTTGTT 58.794 45.455 0.00 0.00 42.22 2.83
673 674 3.065434 GCTGTGGCAGTACAAGAGTTGT 61.065 50.000 0.00 0.00 41.89 3.32
674 675 1.532868 GCTGTGGCAGTACAAGAGTTG 59.467 52.381 0.00 0.00 38.54 3.16
675 676 1.417890 AGCTGTGGCAGTACAAGAGTT 59.582 47.619 0.00 0.00 41.70 3.01
676 677 1.051812 AGCTGTGGCAGTACAAGAGT 58.948 50.000 0.00 0.00 41.70 3.24
677 678 1.436600 CAGCTGTGGCAGTACAAGAG 58.563 55.000 5.25 0.00 41.70 2.85
678 679 0.035317 CCAGCTGTGGCAGTACAAGA 59.965 55.000 13.81 0.00 41.70 3.02
679 680 0.035317 TCCAGCTGTGGCAGTACAAG 59.965 55.000 13.81 0.00 44.60 3.16
680 681 0.692476 ATCCAGCTGTGGCAGTACAA 59.308 50.000 13.81 0.00 44.60 2.41
681 682 0.692476 AATCCAGCTGTGGCAGTACA 59.308 50.000 13.81 0.00 44.60 2.90
682 683 1.740025 GAAATCCAGCTGTGGCAGTAC 59.260 52.381 13.81 0.00 44.60 2.73
683 684 1.675714 CGAAATCCAGCTGTGGCAGTA 60.676 52.381 13.81 0.00 44.60 2.74
684 685 0.957395 CGAAATCCAGCTGTGGCAGT 60.957 55.000 13.81 0.00 44.60 4.40
687 688 2.486966 GCGAAATCCAGCTGTGGC 59.513 61.111 13.81 2.95 44.60 5.01
775 785 0.685785 CTCCTCCTGCTACTGCTCCA 60.686 60.000 0.00 0.00 40.48 3.86
1258 1272 3.041946 GGAAGCAGAATTAGGAGGAGGA 58.958 50.000 0.00 0.00 0.00 3.71
1293 1333 0.679505 ACTGCTACAGCGTTTCCAGA 59.320 50.000 0.00 0.00 45.83 3.86
1300 1340 1.892819 ATCCAGCACTGCTACAGCGT 61.893 55.000 2.39 0.00 45.83 5.07
1451 1491 4.284550 GGTGTGGAAGGCTGGGCA 62.285 66.667 0.00 0.00 0.00 5.36
1506 1546 3.061322 TCAAAACGTGCGTACAAGCTAT 58.939 40.909 4.09 0.00 38.13 2.97
1521 1561 5.299949 ACTTTGATGAAATGGCCTCAAAAC 58.700 37.500 14.39 3.87 37.22 2.43
1618 1659 1.473278 GGGAGACTCGTGGTAGAACTG 59.527 57.143 0.00 0.00 0.00 3.16
1672 1714 4.081420 AGAGTAAGTCACTAAGCACCATGG 60.081 45.833 11.19 11.19 37.72 3.66
1686 1728 6.594547 GGGTTAACTGAATTCCAGAGTAAGTC 59.405 42.308 5.42 0.00 45.78 3.01
1704 1746 4.782019 TTGCAACATGATGAGGGTTAAC 57.218 40.909 7.22 0.00 0.00 2.01
1712 1754 7.884257 TCTTGATTTACTTTGCAACATGATGA 58.116 30.769 7.22 0.00 0.00 2.92
1889 1933 2.176798 CCCTACATAAATGCCCCTTGGA 59.823 50.000 0.00 0.00 0.00 3.53
1925 1969 2.358039 TCCAATCGGAAGTGGTCGT 58.642 52.632 10.01 0.00 41.48 4.34
1943 1987 4.490706 GGAATCCCTGGTACTGGTAGTAT 58.509 47.826 0.00 0.00 46.69 2.12
1989 2033 9.214957 CAAGTTGTACTGTATGTTCTGGAAATA 57.785 33.333 0.00 0.00 0.00 1.40
2079 2162 8.976986 TGGAACTTCTAAATACTTCGTCTTAC 57.023 34.615 0.00 0.00 0.00 2.34
2111 2194 2.755655 AGTCGTGAACAGACATCTAGGG 59.244 50.000 0.00 0.00 40.84 3.53
2257 2342 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
2319 2404 8.943909 ATTAAATGAAGTACTCCCTCGTAAAG 57.056 34.615 0.00 0.00 0.00 1.85
2323 2408 8.755977 TCTTTATTAAATGAAGTACTCCCTCGT 58.244 33.333 0.00 0.00 0.00 4.18
2324 2409 9.765795 ATCTTTATTAAATGAAGTACTCCCTCG 57.234 33.333 0.00 0.00 0.00 4.63
2371 2460 3.282021 GCAGAGGATGGTTGCATTCTAA 58.718 45.455 0.00 0.00 37.75 2.10
2386 2475 7.440523 AACTAGACAAAATACTTTGCAGAGG 57.559 36.000 9.34 0.00 44.96 3.69
2484 2573 7.642669 ACAAGCATATGCATAATCTACACAAC 58.357 34.615 28.62 0.00 45.16 3.32
2532 2627 0.840722 GGAAAGAGGGGAGTGGGACA 60.841 60.000 0.00 0.00 0.00 4.02
2553 2653 9.757227 ATAATTTGATCGTTTTCAAAGGAACAA 57.243 25.926 11.44 11.44 45.83 2.83
2568 2668 7.752239 ACTCAAGCAGTTTTGATAATTTGATCG 59.248 33.333 0.00 0.00 36.55 3.69
2577 2677 6.003326 TCCATGAACTCAAGCAGTTTTGATA 58.997 36.000 0.00 0.00 46.10 2.15
3101 3201 5.126061 CCATGTCTGAGTTTATTTGGAAGGG 59.874 44.000 0.00 0.00 0.00 3.95
3213 3438 3.693807 AGCATGCCAGAAAAGATTCAGA 58.306 40.909 15.66 0.00 38.06 3.27
3371 3597 1.567357 ATAAATGGTTGGGGGTGCAC 58.433 50.000 8.80 8.80 0.00 4.57
3416 3642 3.613563 ACACGCAAACAAGATAACAACG 58.386 40.909 0.00 0.00 0.00 4.10
3444 3670 6.458232 AATCTAGTGTCAGTTACAGCTAGG 57.542 41.667 11.12 0.00 39.29 3.02
3475 3701 2.467566 ACTAAAGTTACCTGGCACGG 57.532 50.000 0.00 2.01 0.00 4.94
3622 3849 4.917385 ACCATTATCCAAGTGCACTTACA 58.083 39.130 30.67 20.11 34.28 2.41
3675 3902 4.149511 TGATGAACAGACCAAAGTCACA 57.850 40.909 0.00 0.00 46.15 3.58
3844 4071 2.907482 ATACTGCCCCATCCACCGGA 62.907 60.000 9.46 0.00 35.55 5.14
3848 4075 1.131638 TGAGATACTGCCCCATCCAC 58.868 55.000 0.00 0.00 0.00 4.02
3859 4086 0.382515 GCCGTCGCTCTTGAGATACT 59.617 55.000 1.30 0.00 0.00 2.12
3925 4152 6.557110 TGTATCTAAACATCGACGATCACAA 58.443 36.000 7.54 0.00 0.00 3.33
4018 4245 5.045869 CCCTTGGATTAGTCAACCTTACAGA 60.046 44.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.