Multiple sequence alignment - TraesCS6B01G305700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G305700 chr6B 100.000 2224 0 0 1 2224 548707736 548705513 0 4108
1 TraesCS6B01G305700 chr6B 95.797 928 36 3 1298 2222 294843936 294844863 0 1495
2 TraesCS6B01G305700 chr6B 95.474 928 39 3 1298 2222 123878499 123879426 0 1478
3 TraesCS6B01G305700 chr6B 95.464 926 38 4 1298 2220 650586782 650587706 0 1474
4 TraesCS6B01G305700 chr6B 95.733 914 38 1 1 913 483216520 483217433 0 1471
5 TraesCS6B01G305700 chr7B 95.905 928 35 3 1298 2222 687077000 687076073 0 1500
6 TraesCS6B01G305700 chr7B 95.842 914 37 1 1 913 536111332 536112245 0 1476
7 TraesCS6B01G305700 chr1D 96.280 914 33 1 1 913 211182821 211183734 0 1498
8 TraesCS6B01G305700 chr1D 95.582 928 38 3 1298 2222 211183728 211184655 0 1483
9 TraesCS6B01G305700 chr1D 97.710 393 9 0 914 1306 51860286 51860678 0 676
10 TraesCS6B01G305700 chr1D 97.201 393 10 1 914 1306 254446785 254446394 0 664
11 TraesCS6B01G305700 chr1D 95.970 397 15 1 914 1309 246429941 246429545 0 643
12 TraesCS6B01G305700 chr1B 95.901 927 35 3 1298 2221 368642440 368641514 0 1498
13 TraesCS6B01G305700 chr1B 95.856 917 36 2 1307 2222 404209733 404208818 0 1482
14 TraesCS6B01G305700 chr1B 95.733 914 37 2 1 913 264655886 264654974 0 1471
15 TraesCS6B01G305700 chr1B 95.624 914 39 1 1 913 583775546 583776459 0 1465
16 TraesCS6B01G305700 chr3B 95.797 928 33 6 1298 2222 716841898 716840974 0 1493
17 TraesCS6B01G305700 chr3B 95.733 914 37 2 1 913 134503639 134504551 0 1471
18 TraesCS6B01G305700 chr3B 97.455 393 10 0 914 1306 101908398 101908790 0 671
19 TraesCS6B01G305700 chr4B 96.061 914 35 1 1 913 295536750 295535837 0 1487
20 TraesCS6B01G305700 chr4B 95.842 914 37 1 1 913 96919693 96920606 0 1476
21 TraesCS6B01G305700 chrUn 95.842 914 35 2 1 913 53768680 53769591 0 1474
22 TraesCS6B01G305700 chr5B 95.366 928 40 3 1298 2222 479288763 479289690 0 1472
23 TraesCS6B01G305700 chr5D 97.710 393 9 0 914 1306 6264193 6264585 0 676
24 TraesCS6B01G305700 chr5D 97.455 393 10 0 914 1306 503303619 503303227 0 671
25 TraesCS6B01G305700 chr5D 96.947 393 11 1 914 1306 329152104 329152495 0 658
26 TraesCS6B01G305700 chr5D 96.438 393 14 0 914 1306 6165166 6165558 0 649
27 TraesCS6B01G305700 chr4A 96.947 393 11 1 914 1306 309478573 309478964 0 658


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G305700 chr6B 548705513 548707736 2223 True 4108.0 4108 100.000 1 2224 1 chr6B.!!$R1 2223
1 TraesCS6B01G305700 chr6B 294843936 294844863 927 False 1495.0 1495 95.797 1298 2222 1 chr6B.!!$F2 924
2 TraesCS6B01G305700 chr6B 123878499 123879426 927 False 1478.0 1478 95.474 1298 2222 1 chr6B.!!$F1 924
3 TraesCS6B01G305700 chr6B 650586782 650587706 924 False 1474.0 1474 95.464 1298 2220 1 chr6B.!!$F4 922
4 TraesCS6B01G305700 chr6B 483216520 483217433 913 False 1471.0 1471 95.733 1 913 1 chr6B.!!$F3 912
5 TraesCS6B01G305700 chr7B 687076073 687077000 927 True 1500.0 1500 95.905 1298 2222 1 chr7B.!!$R1 924
6 TraesCS6B01G305700 chr7B 536111332 536112245 913 False 1476.0 1476 95.842 1 913 1 chr7B.!!$F1 912
7 TraesCS6B01G305700 chr1D 211182821 211184655 1834 False 1490.5 1498 95.931 1 2222 2 chr1D.!!$F2 2221
8 TraesCS6B01G305700 chr1B 368641514 368642440 926 True 1498.0 1498 95.901 1298 2221 1 chr1B.!!$R2 923
9 TraesCS6B01G305700 chr1B 404208818 404209733 915 True 1482.0 1482 95.856 1307 2222 1 chr1B.!!$R3 915
10 TraesCS6B01G305700 chr1B 264654974 264655886 912 True 1471.0 1471 95.733 1 913 1 chr1B.!!$R1 912
11 TraesCS6B01G305700 chr1B 583775546 583776459 913 False 1465.0 1465 95.624 1 913 1 chr1B.!!$F1 912
12 TraesCS6B01G305700 chr3B 716840974 716841898 924 True 1493.0 1493 95.797 1298 2222 1 chr3B.!!$R1 924
13 TraesCS6B01G305700 chr3B 134503639 134504551 912 False 1471.0 1471 95.733 1 913 1 chr3B.!!$F2 912
14 TraesCS6B01G305700 chr4B 295535837 295536750 913 True 1487.0 1487 96.061 1 913 1 chr4B.!!$R1 912
15 TraesCS6B01G305700 chr4B 96919693 96920606 913 False 1476.0 1476 95.842 1 913 1 chr4B.!!$F1 912
16 TraesCS6B01G305700 chrUn 53768680 53769591 911 False 1474.0 1474 95.842 1 913 1 chrUn.!!$F1 912
17 TraesCS6B01G305700 chr5B 479288763 479289690 927 False 1472.0 1472 95.366 1298 2222 1 chr5B.!!$F1 924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 997 0.251073 CCGGGTACTCGGGTTCAAAT 59.749 55.0 27.18 0.0 45.78 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 2176 3.550275 TGCATACACTCGCGAAGAATAAC 59.45 43.478 11.33 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 135 3.374764 ACCAGGTTTGAAGCCTTTCTTT 58.625 40.909 0.00 0.00 34.56 2.52
237 238 4.496341 CGTGATCTGGAAATTTTGGATCCG 60.496 45.833 7.39 16.63 35.96 4.18
246 247 5.474825 GAAATTTTGGATCCGCAAAACCTA 58.525 37.500 11.16 0.00 33.79 3.08
417 418 5.709631 TCATCGAAATCAATTCCTTCAACCA 59.290 36.000 0.00 0.00 34.34 3.67
535 536 2.743718 CTTGCGTGGGTCTGGTCT 59.256 61.111 0.00 0.00 0.00 3.85
599 600 4.811969 TTCATCTTGCATGGCTTGAATT 57.188 36.364 4.32 0.00 0.00 2.17
702 703 1.242076 ATGTGAAGCTTTTGAGCGCT 58.758 45.000 11.27 11.27 40.27 5.92
815 817 1.615384 GCCCAGCAGTTTCTTCAGGAT 60.615 52.381 0.00 0.00 0.00 3.24
818 820 2.746362 CCAGCAGTTTCTTCAGGATCAC 59.254 50.000 0.00 0.00 0.00 3.06
846 848 2.164827 CAGCAGCACCAGCATGATTTTA 59.835 45.455 0.00 0.00 45.49 1.52
914 916 5.423015 TGACATCCTCAGTAGCTTTGAATC 58.577 41.667 0.00 0.00 0.00 2.52
915 917 4.775236 ACATCCTCAGTAGCTTTGAATCC 58.225 43.478 0.00 0.00 0.00 3.01
916 918 3.914426 TCCTCAGTAGCTTTGAATCCC 57.086 47.619 0.00 0.00 0.00 3.85
917 919 3.454858 TCCTCAGTAGCTTTGAATCCCT 58.545 45.455 0.00 0.00 0.00 4.20
918 920 4.620723 TCCTCAGTAGCTTTGAATCCCTA 58.379 43.478 0.00 0.00 0.00 3.53
919 921 5.219739 TCCTCAGTAGCTTTGAATCCCTAT 58.780 41.667 0.00 0.00 0.00 2.57
920 922 5.667626 TCCTCAGTAGCTTTGAATCCCTATT 59.332 40.000 0.00 0.00 0.00 1.73
921 923 6.844388 TCCTCAGTAGCTTTGAATCCCTATTA 59.156 38.462 0.00 0.00 0.00 0.98
922 924 7.015682 TCCTCAGTAGCTTTGAATCCCTATTAG 59.984 40.741 0.00 0.00 0.00 1.73
923 925 7.015682 CCTCAGTAGCTTTGAATCCCTATTAGA 59.984 40.741 0.00 0.00 0.00 2.10
924 926 8.319057 TCAGTAGCTTTGAATCCCTATTAGAA 57.681 34.615 0.00 0.00 0.00 2.10
925 927 8.204836 TCAGTAGCTTTGAATCCCTATTAGAAC 58.795 37.037 0.00 0.00 0.00 3.01
926 928 7.987458 CAGTAGCTTTGAATCCCTATTAGAACA 59.013 37.037 0.00 0.00 0.00 3.18
927 929 8.207545 AGTAGCTTTGAATCCCTATTAGAACAG 58.792 37.037 0.00 0.00 0.00 3.16
928 930 6.360618 AGCTTTGAATCCCTATTAGAACAGG 58.639 40.000 0.00 0.00 0.00 4.00
929 931 6.069381 AGCTTTGAATCCCTATTAGAACAGGT 60.069 38.462 0.00 0.00 0.00 4.00
930 932 6.603599 GCTTTGAATCCCTATTAGAACAGGTT 59.396 38.462 0.00 0.00 0.00 3.50
931 933 7.415653 GCTTTGAATCCCTATTAGAACAGGTTG 60.416 40.741 0.00 0.00 0.00 3.77
932 934 5.437060 TGAATCCCTATTAGAACAGGTTGC 58.563 41.667 0.00 0.00 0.00 4.17
933 935 5.191722 TGAATCCCTATTAGAACAGGTTGCT 59.808 40.000 0.00 0.00 0.00 3.91
934 936 4.755266 TCCCTATTAGAACAGGTTGCTC 57.245 45.455 0.00 0.00 0.00 4.26
935 937 4.101114 TCCCTATTAGAACAGGTTGCTCA 58.899 43.478 0.00 0.00 0.00 4.26
936 938 4.534500 TCCCTATTAGAACAGGTTGCTCAA 59.466 41.667 0.00 0.00 0.00 3.02
937 939 5.013704 TCCCTATTAGAACAGGTTGCTCAAA 59.986 40.000 0.00 0.00 0.00 2.69
938 940 5.355350 CCCTATTAGAACAGGTTGCTCAAAG 59.645 44.000 0.00 0.00 0.00 2.77
939 941 5.355350 CCTATTAGAACAGGTTGCTCAAAGG 59.645 44.000 0.00 0.00 0.00 3.11
940 942 2.736670 AGAACAGGTTGCTCAAAGGT 57.263 45.000 0.00 0.00 0.00 3.50
941 943 2.301346 AGAACAGGTTGCTCAAAGGTG 58.699 47.619 0.00 0.00 0.00 4.00
942 944 2.024414 GAACAGGTTGCTCAAAGGTGT 58.976 47.619 0.00 0.00 0.00 4.16
943 945 1.680338 ACAGGTTGCTCAAAGGTGTC 58.320 50.000 0.00 0.00 0.00 3.67
944 946 0.588252 CAGGTTGCTCAAAGGTGTCG 59.412 55.000 0.00 0.00 0.00 4.35
945 947 1.166531 AGGTTGCTCAAAGGTGTCGC 61.167 55.000 0.00 0.00 0.00 5.19
946 948 1.282875 GTTGCTCAAAGGTGTCGCC 59.717 57.895 0.00 0.00 37.58 5.54
955 957 3.967715 GGTGTCGCCTGTTCTTCC 58.032 61.111 0.00 0.00 0.00 3.46
956 958 1.070786 GGTGTCGCCTGTTCTTCCA 59.929 57.895 0.00 0.00 0.00 3.53
957 959 0.321653 GGTGTCGCCTGTTCTTCCAT 60.322 55.000 0.00 0.00 0.00 3.41
958 960 1.079503 GTGTCGCCTGTTCTTCCATC 58.920 55.000 0.00 0.00 0.00 3.51
959 961 0.684535 TGTCGCCTGTTCTTCCATCA 59.315 50.000 0.00 0.00 0.00 3.07
960 962 1.071542 TGTCGCCTGTTCTTCCATCAA 59.928 47.619 0.00 0.00 0.00 2.57
961 963 2.151202 GTCGCCTGTTCTTCCATCAAA 58.849 47.619 0.00 0.00 0.00 2.69
962 964 2.749621 GTCGCCTGTTCTTCCATCAAAT 59.250 45.455 0.00 0.00 0.00 2.32
963 965 3.938963 GTCGCCTGTTCTTCCATCAAATA 59.061 43.478 0.00 0.00 0.00 1.40
964 966 4.576463 GTCGCCTGTTCTTCCATCAAATAT 59.424 41.667 0.00 0.00 0.00 1.28
965 967 5.066505 GTCGCCTGTTCTTCCATCAAATATT 59.933 40.000 0.00 0.00 0.00 1.28
966 968 5.296780 TCGCCTGTTCTTCCATCAAATATTC 59.703 40.000 0.00 0.00 0.00 1.75
967 969 5.297776 CGCCTGTTCTTCCATCAAATATTCT 59.702 40.000 0.00 0.00 0.00 2.40
968 970 6.501781 GCCTGTTCTTCCATCAAATATTCTG 58.498 40.000 0.00 0.00 0.00 3.02
969 971 6.501781 CCTGTTCTTCCATCAAATATTCTGC 58.498 40.000 0.00 0.00 0.00 4.26
970 972 6.320672 CCTGTTCTTCCATCAAATATTCTGCT 59.679 38.462 0.00 0.00 0.00 4.24
971 973 7.147949 CCTGTTCTTCCATCAAATATTCTGCTT 60.148 37.037 0.00 0.00 0.00 3.91
972 974 8.125978 TGTTCTTCCATCAAATATTCTGCTTT 57.874 30.769 0.00 0.00 0.00 3.51
973 975 8.587608 TGTTCTTCCATCAAATATTCTGCTTTT 58.412 29.630 0.00 0.00 0.00 2.27
974 976 9.428097 GTTCTTCCATCAAATATTCTGCTTTTT 57.572 29.630 0.00 0.00 0.00 1.94
975 977 9.643693 TTCTTCCATCAAATATTCTGCTTTTTC 57.356 29.630 0.00 0.00 0.00 2.29
976 978 8.253113 TCTTCCATCAAATATTCTGCTTTTTCC 58.747 33.333 0.00 0.00 0.00 3.13
977 979 6.877236 TCCATCAAATATTCTGCTTTTTCCC 58.123 36.000 0.00 0.00 0.00 3.97
978 980 5.750067 CCATCAAATATTCTGCTTTTTCCCG 59.250 40.000 0.00 0.00 0.00 5.14
979 981 5.323371 TCAAATATTCTGCTTTTTCCCGG 57.677 39.130 0.00 0.00 0.00 5.73
980 982 4.159506 TCAAATATTCTGCTTTTTCCCGGG 59.840 41.667 16.85 16.85 0.00 5.73
981 983 2.891191 TATTCTGCTTTTTCCCGGGT 57.109 45.000 22.86 0.00 0.00 5.28
982 984 2.891191 ATTCTGCTTTTTCCCGGGTA 57.109 45.000 22.86 8.50 0.00 3.69
983 985 1.900245 TTCTGCTTTTTCCCGGGTAC 58.100 50.000 22.86 5.31 0.00 3.34
984 986 1.061546 TCTGCTTTTTCCCGGGTACT 58.938 50.000 22.86 0.00 0.00 2.73
985 987 1.002773 TCTGCTTTTTCCCGGGTACTC 59.997 52.381 22.86 6.82 0.00 2.59
986 988 0.320946 TGCTTTTTCCCGGGTACTCG 60.321 55.000 22.86 8.57 0.00 4.18
993 995 3.379880 CCGGGTACTCGGGTTCAA 58.620 61.111 27.18 0.00 45.78 2.69
994 996 1.672898 CCGGGTACTCGGGTTCAAA 59.327 57.895 27.18 0.00 45.78 2.69
995 997 0.251073 CCGGGTACTCGGGTTCAAAT 59.749 55.000 27.18 0.00 45.78 2.32
996 998 1.481772 CCGGGTACTCGGGTTCAAATA 59.518 52.381 27.18 0.00 45.78 1.40
997 999 2.543641 CGGGTACTCGGGTTCAAATAC 58.456 52.381 7.42 0.00 0.00 1.89
998 1000 2.739609 CGGGTACTCGGGTTCAAATACC 60.740 54.545 7.42 0.00 37.47 2.73
1044 1046 8.579850 ACTGGCTTCATATAATTCTGAAAACA 57.420 30.769 0.00 0.00 31.40 2.83
1045 1047 8.462016 ACTGGCTTCATATAATTCTGAAAACAC 58.538 33.333 0.00 0.00 31.40 3.32
1046 1048 8.347004 TGGCTTCATATAATTCTGAAAACACA 57.653 30.769 0.00 0.00 31.40 3.72
1047 1049 8.801299 TGGCTTCATATAATTCTGAAAACACAA 58.199 29.630 0.00 0.00 31.40 3.33
1048 1050 9.294030 GGCTTCATATAATTCTGAAAACACAAG 57.706 33.333 0.00 0.00 31.40 3.16
1049 1051 9.846248 GCTTCATATAATTCTGAAAACACAAGT 57.154 29.630 0.00 0.00 31.40 3.16
1067 1069 3.998099 AGTTTTCTTGAAGCCTCTTGC 57.002 42.857 0.00 0.00 41.71 4.01
1068 1070 3.956848 AAGTTTTCTTGAAGCCTCTTGCT 59.043 39.130 0.00 0.00 45.60 3.91
1069 1071 4.037327 AAGTTTTCTTGAAGCCTCTTGCTC 59.963 41.667 0.00 0.00 43.97 4.26
1070 1072 6.384323 AAGTTTTCTTGAAGCCTCTTGCTCA 61.384 40.000 0.00 0.00 43.97 4.26
1071 1073 7.641413 AAGTTTTCTTGAAGCCTCTTGCTCAT 61.641 38.462 0.00 0.00 43.97 2.90
1072 1074 8.391702 AAGTTTTCTTGAAGCCTCTTGCTCATA 61.392 37.037 0.00 0.00 43.97 2.15
1080 1082 4.540359 GCCTCTTGCTCATATCTCTCAT 57.460 45.455 0.00 0.00 36.87 2.90
1081 1083 4.497300 GCCTCTTGCTCATATCTCTCATC 58.503 47.826 0.00 0.00 36.87 2.92
1082 1084 4.021280 GCCTCTTGCTCATATCTCTCATCA 60.021 45.833 0.00 0.00 36.87 3.07
1083 1085 5.511031 GCCTCTTGCTCATATCTCTCATCAA 60.511 44.000 0.00 0.00 36.87 2.57
1084 1086 6.522946 CCTCTTGCTCATATCTCTCATCAAA 58.477 40.000 0.00 0.00 0.00 2.69
1085 1087 6.647481 CCTCTTGCTCATATCTCTCATCAAAG 59.353 42.308 0.00 0.00 0.00 2.77
1086 1088 6.522946 TCTTGCTCATATCTCTCATCAAAGG 58.477 40.000 0.00 0.00 0.00 3.11
1087 1089 5.224821 TGCTCATATCTCTCATCAAAGGG 57.775 43.478 0.00 0.00 0.00 3.95
1088 1090 4.657504 TGCTCATATCTCTCATCAAAGGGT 59.342 41.667 0.00 0.00 0.00 4.34
1089 1091 4.996122 GCTCATATCTCTCATCAAAGGGTG 59.004 45.833 0.00 0.00 0.00 4.61
1090 1092 4.965814 TCATATCTCTCATCAAAGGGTGC 58.034 43.478 0.00 0.00 0.00 5.01
1091 1093 4.657504 TCATATCTCTCATCAAAGGGTGCT 59.342 41.667 0.00 0.00 0.00 4.40
1092 1094 5.840693 TCATATCTCTCATCAAAGGGTGCTA 59.159 40.000 0.00 0.00 0.00 3.49
1093 1095 6.499699 TCATATCTCTCATCAAAGGGTGCTAT 59.500 38.462 0.00 0.00 0.00 2.97
1094 1096 5.643421 ATCTCTCATCAAAGGGTGCTATT 57.357 39.130 0.00 0.00 0.00 1.73
1095 1097 6.753913 ATCTCTCATCAAAGGGTGCTATTA 57.246 37.500 0.00 0.00 0.00 0.98
1096 1098 6.753913 TCTCTCATCAAAGGGTGCTATTAT 57.246 37.500 0.00 0.00 0.00 1.28
1097 1099 7.855784 TCTCTCATCAAAGGGTGCTATTATA 57.144 36.000 0.00 0.00 0.00 0.98
1098 1100 8.441311 TCTCTCATCAAAGGGTGCTATTATAT 57.559 34.615 0.00 0.00 0.00 0.86
1099 1101 9.547279 TCTCTCATCAAAGGGTGCTATTATATA 57.453 33.333 0.00 0.00 0.00 0.86
1120 1122 8.870075 ATATAATGTTTCTTTAGCAGATCCCC 57.130 34.615 0.00 0.00 0.00 4.81
1121 1123 3.366052 TGTTTCTTTAGCAGATCCCCC 57.634 47.619 0.00 0.00 0.00 5.40
1122 1124 2.289565 GTTTCTTTAGCAGATCCCCCG 58.710 52.381 0.00 0.00 0.00 5.73
1123 1125 1.580059 TTCTTTAGCAGATCCCCCGT 58.420 50.000 0.00 0.00 0.00 5.28
1124 1126 1.580059 TCTTTAGCAGATCCCCCGTT 58.420 50.000 0.00 0.00 0.00 4.44
1125 1127 2.754465 TCTTTAGCAGATCCCCCGTTA 58.246 47.619 0.00 0.00 0.00 3.18
1126 1128 3.109151 TCTTTAGCAGATCCCCCGTTAA 58.891 45.455 0.00 0.00 0.00 2.01
1127 1129 3.714798 TCTTTAGCAGATCCCCCGTTAAT 59.285 43.478 0.00 0.00 0.00 1.40
1128 1130 3.764237 TTAGCAGATCCCCCGTTAATC 57.236 47.619 0.00 0.00 0.00 1.75
1129 1131 0.765510 AGCAGATCCCCCGTTAATCC 59.234 55.000 0.00 0.00 0.00 3.01
1130 1132 0.602905 GCAGATCCCCCGTTAATCCG 60.603 60.000 0.00 0.00 0.00 4.18
1131 1133 1.045407 CAGATCCCCCGTTAATCCGA 58.955 55.000 0.00 0.00 0.00 4.55
1132 1134 1.000955 CAGATCCCCCGTTAATCCGAG 59.999 57.143 0.00 0.00 0.00 4.63
1133 1135 0.320508 GATCCCCCGTTAATCCGAGC 60.321 60.000 0.00 0.00 0.00 5.03
1134 1136 1.052124 ATCCCCCGTTAATCCGAGCA 61.052 55.000 0.00 0.00 0.00 4.26
1135 1137 1.222387 CCCCCGTTAATCCGAGCAA 59.778 57.895 0.00 0.00 0.00 3.91
1136 1138 0.393267 CCCCCGTTAATCCGAGCAAA 60.393 55.000 0.00 0.00 0.00 3.68
1137 1139 0.730840 CCCCGTTAATCCGAGCAAAC 59.269 55.000 0.00 0.00 0.00 2.93
1138 1140 1.677820 CCCCGTTAATCCGAGCAAACT 60.678 52.381 0.00 0.00 0.00 2.66
1139 1141 2.081462 CCCGTTAATCCGAGCAAACTT 58.919 47.619 0.00 0.00 0.00 2.66
1140 1142 2.486592 CCCGTTAATCCGAGCAAACTTT 59.513 45.455 0.00 0.00 0.00 2.66
1141 1143 3.425758 CCCGTTAATCCGAGCAAACTTTC 60.426 47.826 0.00 0.00 0.00 2.62
1142 1144 3.187637 CCGTTAATCCGAGCAAACTTTCA 59.812 43.478 0.00 0.00 0.00 2.69
1143 1145 4.319911 CCGTTAATCCGAGCAAACTTTCAA 60.320 41.667 0.00 0.00 0.00 2.69
1144 1146 5.209240 CGTTAATCCGAGCAAACTTTCAAA 58.791 37.500 0.00 0.00 0.00 2.69
1145 1147 5.856455 CGTTAATCCGAGCAAACTTTCAAAT 59.144 36.000 0.00 0.00 0.00 2.32
1146 1148 7.018826 CGTTAATCCGAGCAAACTTTCAAATA 58.981 34.615 0.00 0.00 0.00 1.40
1147 1149 7.696453 CGTTAATCCGAGCAAACTTTCAAATAT 59.304 33.333 0.00 0.00 0.00 1.28
1148 1150 9.353999 GTTAATCCGAGCAAACTTTCAAATATT 57.646 29.630 0.00 0.00 0.00 1.28
1149 1151 9.921637 TTAATCCGAGCAAACTTTCAAATATTT 57.078 25.926 0.00 0.00 0.00 1.40
1150 1152 7.816945 ATCCGAGCAAACTTTCAAATATTTG 57.183 32.000 20.13 20.13 39.48 2.32
1151 1153 6.744112 TCCGAGCAAACTTTCAAATATTTGT 58.256 32.000 23.95 5.75 39.18 2.83
1152 1154 6.861055 TCCGAGCAAACTTTCAAATATTTGTC 59.139 34.615 23.95 12.11 39.18 3.18
1153 1155 6.089417 CCGAGCAAACTTTCAAATATTTGTCC 59.911 38.462 23.95 8.00 39.18 4.02
1154 1156 6.089417 CGAGCAAACTTTCAAATATTTGTCCC 59.911 38.462 23.95 8.42 39.18 4.46
1155 1157 6.825610 AGCAAACTTTCAAATATTTGTCCCA 58.174 32.000 23.95 5.75 39.18 4.37
1156 1158 6.705825 AGCAAACTTTCAAATATTTGTCCCAC 59.294 34.615 23.95 10.19 39.18 4.61
1157 1159 6.481644 GCAAACTTTCAAATATTTGTCCCACA 59.518 34.615 23.95 4.73 39.18 4.17
1158 1160 7.173047 GCAAACTTTCAAATATTTGTCCCACAT 59.827 33.333 23.95 7.40 39.18 3.21
1159 1161 9.054922 CAAACTTTCAAATATTTGTCCCACATT 57.945 29.630 23.95 11.38 39.18 2.71
1160 1162 8.831715 AACTTTCAAATATTTGTCCCACATTC 57.168 30.769 23.95 0.00 39.18 2.67
1161 1163 7.961351 ACTTTCAAATATTTGTCCCACATTCA 58.039 30.769 23.95 2.07 39.18 2.57
1162 1164 8.596293 ACTTTCAAATATTTGTCCCACATTCAT 58.404 29.630 23.95 1.07 39.18 2.57
1163 1165 9.439500 CTTTCAAATATTTGTCCCACATTCATT 57.561 29.630 23.95 0.00 39.18 2.57
1164 1166 9.434420 TTTCAAATATTTGTCCCACATTCATTC 57.566 29.630 23.95 0.00 39.18 2.67
1165 1167 7.257003 TCAAATATTTGTCCCACATTCATTCG 58.743 34.615 23.95 0.00 39.18 3.34
1166 1168 5.772825 ATATTTGTCCCACATTCATTCGG 57.227 39.130 0.00 0.00 0.00 4.30
1167 1169 1.832883 TTGTCCCACATTCATTCGGG 58.167 50.000 0.00 0.00 40.32 5.14
1168 1170 0.988063 TGTCCCACATTCATTCGGGA 59.012 50.000 0.00 0.00 45.66 5.14
1170 1172 0.546122 TCCCACATTCATTCGGGAGG 59.454 55.000 0.00 0.00 42.94 4.30
1171 1173 0.466189 CCCACATTCATTCGGGAGGG 60.466 60.000 0.00 0.00 41.62 4.30
1172 1174 0.255890 CCACATTCATTCGGGAGGGT 59.744 55.000 0.00 0.00 0.00 4.34
1173 1175 1.488812 CCACATTCATTCGGGAGGGTA 59.511 52.381 0.00 0.00 0.00 3.69
1174 1176 2.561569 CACATTCATTCGGGAGGGTAC 58.438 52.381 0.00 0.00 0.00 3.34
1175 1177 2.170607 CACATTCATTCGGGAGGGTACT 59.829 50.000 0.00 0.00 0.00 2.73
1176 1178 2.434702 ACATTCATTCGGGAGGGTACTC 59.565 50.000 0.00 0.00 43.20 2.59
1189 1191 4.363546 AGGGTACTCCTAAGGGATTGAA 57.636 45.455 1.40 0.00 45.98 2.69
1190 1192 4.299485 AGGGTACTCCTAAGGGATTGAAG 58.701 47.826 1.40 0.00 45.98 3.02
1191 1193 4.015541 AGGGTACTCCTAAGGGATTGAAGA 60.016 45.833 1.40 0.00 45.98 2.87
1192 1194 4.101274 GGGTACTCCTAAGGGATTGAAGAC 59.899 50.000 0.00 0.00 41.36 3.01
1193 1195 4.101274 GGTACTCCTAAGGGATTGAAGACC 59.899 50.000 0.00 0.00 41.36 3.85
1194 1196 3.803340 ACTCCTAAGGGATTGAAGACCA 58.197 45.455 0.00 0.00 41.36 4.02
1195 1197 4.375313 ACTCCTAAGGGATTGAAGACCAT 58.625 43.478 0.00 0.00 41.36 3.55
1196 1198 5.538877 ACTCCTAAGGGATTGAAGACCATA 58.461 41.667 0.00 0.00 41.36 2.74
1197 1199 6.153924 ACTCCTAAGGGATTGAAGACCATAT 58.846 40.000 0.00 0.00 41.36 1.78
1198 1200 6.271159 ACTCCTAAGGGATTGAAGACCATATC 59.729 42.308 0.00 0.00 41.36 1.63
1199 1201 6.150332 TCCTAAGGGATTGAAGACCATATCA 58.850 40.000 0.00 0.00 36.57 2.15
1200 1202 6.619437 TCCTAAGGGATTGAAGACCATATCAA 59.381 38.462 0.00 0.00 39.66 2.57
1201 1203 6.712547 CCTAAGGGATTGAAGACCATATCAAC 59.287 42.308 0.00 0.00 38.29 3.18
1202 1204 4.708177 AGGGATTGAAGACCATATCAACG 58.292 43.478 0.00 0.00 38.29 4.10
1203 1205 3.815401 GGGATTGAAGACCATATCAACGG 59.185 47.826 0.00 0.00 38.29 4.44
1204 1206 3.815401 GGATTGAAGACCATATCAACGGG 59.185 47.826 0.00 0.00 38.29 5.28
1205 1207 3.992943 TTGAAGACCATATCAACGGGT 57.007 42.857 0.00 0.00 37.70 5.28
1206 1208 3.260475 TGAAGACCATATCAACGGGTG 57.740 47.619 0.00 0.00 34.39 4.61
1207 1209 2.569853 TGAAGACCATATCAACGGGTGT 59.430 45.455 0.00 0.00 34.39 4.16
1208 1210 3.008594 TGAAGACCATATCAACGGGTGTT 59.991 43.478 0.00 0.00 40.46 3.32
1209 1211 3.261981 AGACCATATCAACGGGTGTTC 57.738 47.619 0.00 0.00 35.72 3.18
1210 1212 2.093128 AGACCATATCAACGGGTGTTCC 60.093 50.000 0.00 0.00 35.72 3.62
1211 1213 1.631388 ACCATATCAACGGGTGTTCCA 59.369 47.619 0.00 0.00 35.72 3.53
1212 1214 2.241176 ACCATATCAACGGGTGTTCCAT 59.759 45.455 0.00 0.00 35.72 3.41
1213 1215 2.878406 CCATATCAACGGGTGTTCCATC 59.122 50.000 0.00 0.00 35.72 3.51
1214 1216 3.433598 CCATATCAACGGGTGTTCCATCT 60.434 47.826 0.00 0.00 35.72 2.90
1215 1217 2.879103 ATCAACGGGTGTTCCATCTT 57.121 45.000 0.00 0.00 35.72 2.40
1216 1218 1.890876 TCAACGGGTGTTCCATCTTG 58.109 50.000 0.00 0.00 35.72 3.02
1217 1219 0.240945 CAACGGGTGTTCCATCTTGC 59.759 55.000 0.00 0.00 35.72 4.01
1218 1220 0.179004 AACGGGTGTTCCATCTTGCA 60.179 50.000 0.00 0.00 30.83 4.08
1219 1221 0.179004 ACGGGTGTTCCATCTTGCAA 60.179 50.000 0.00 0.00 34.36 4.08
1220 1222 0.958091 CGGGTGTTCCATCTTGCAAA 59.042 50.000 0.00 0.00 34.36 3.68
1221 1223 1.545582 CGGGTGTTCCATCTTGCAAAT 59.454 47.619 0.00 0.00 34.36 2.32
1222 1224 2.752354 CGGGTGTTCCATCTTGCAAATA 59.248 45.455 0.00 0.00 34.36 1.40
1223 1225 3.181497 CGGGTGTTCCATCTTGCAAATAG 60.181 47.826 0.00 0.00 34.36 1.73
1224 1226 3.131046 GGGTGTTCCATCTTGCAAATAGG 59.869 47.826 0.00 2.33 35.00 2.57
1225 1227 3.131046 GGTGTTCCATCTTGCAAATAGGG 59.869 47.826 0.00 3.05 0.00 3.53
1226 1228 2.760092 TGTTCCATCTTGCAAATAGGGC 59.240 45.455 0.00 0.86 0.00 5.19
1227 1229 2.760092 GTTCCATCTTGCAAATAGGGCA 59.240 45.455 0.00 0.00 40.00 5.36
1228 1230 3.317455 TCCATCTTGCAAATAGGGCAT 57.683 42.857 0.00 0.00 41.58 4.40
1229 1231 4.451891 TCCATCTTGCAAATAGGGCATA 57.548 40.909 0.00 0.00 41.58 3.14
1230 1232 5.001833 TCCATCTTGCAAATAGGGCATAT 57.998 39.130 0.00 0.00 41.58 1.78
1231 1233 5.012239 TCCATCTTGCAAATAGGGCATATC 58.988 41.667 0.00 0.00 41.58 1.63
1232 1234 5.014858 CCATCTTGCAAATAGGGCATATCT 58.985 41.667 0.00 0.00 41.58 1.98
1233 1235 5.479375 CCATCTTGCAAATAGGGCATATCTT 59.521 40.000 0.00 0.00 41.58 2.40
1234 1236 6.387465 CATCTTGCAAATAGGGCATATCTTG 58.613 40.000 0.00 1.58 41.58 3.02
1258 1260 7.848223 GCCTAGGCAAAATTTTGTAAATGAT 57.152 32.000 29.33 11.40 40.24 2.45
1259 1261 7.909267 GCCTAGGCAAAATTTTGTAAATGATC 58.091 34.615 29.33 11.33 40.24 2.92
1260 1262 7.011389 GCCTAGGCAAAATTTTGTAAATGATCC 59.989 37.037 29.33 18.27 40.24 3.36
1261 1263 7.495606 CCTAGGCAAAATTTTGTAAATGATCCC 59.504 37.037 27.13 17.68 40.24 3.85
1262 1264 7.019656 AGGCAAAATTTTGTAAATGATCCCT 57.980 32.000 27.13 19.27 40.24 4.20
1263 1265 7.460910 AGGCAAAATTTTGTAAATGATCCCTT 58.539 30.769 27.13 5.07 40.24 3.95
1264 1266 7.944000 AGGCAAAATTTTGTAAATGATCCCTTT 59.056 29.630 27.13 4.25 40.24 3.11
1265 1267 9.225436 GGCAAAATTTTGTAAATGATCCCTTTA 57.775 29.630 27.13 0.00 40.24 1.85
1271 1273 8.671987 TTTTGTAAATGATCCCTTTATTCCCA 57.328 30.769 0.00 0.00 0.00 4.37
1272 1274 8.852671 TTTGTAAATGATCCCTTTATTCCCAT 57.147 30.769 0.00 0.00 0.00 4.00
1273 1275 7.838079 TGTAAATGATCCCTTTATTCCCATG 57.162 36.000 0.00 0.00 0.00 3.66
1274 1276 7.361438 TGTAAATGATCCCTTTATTCCCATGT 58.639 34.615 0.00 0.00 0.00 3.21
1275 1277 6.983906 AAATGATCCCTTTATTCCCATGTC 57.016 37.500 0.00 0.00 0.00 3.06
1276 1278 5.937492 ATGATCCCTTTATTCCCATGTCT 57.063 39.130 0.00 0.00 0.00 3.41
1277 1279 5.732331 TGATCCCTTTATTCCCATGTCTT 57.268 39.130 0.00 0.00 0.00 3.01
1278 1280 5.694995 TGATCCCTTTATTCCCATGTCTTC 58.305 41.667 0.00 0.00 0.00 2.87
1279 1281 4.519906 TCCCTTTATTCCCATGTCTTCC 57.480 45.455 0.00 0.00 0.00 3.46
1280 1282 3.855599 TCCCTTTATTCCCATGTCTTCCA 59.144 43.478 0.00 0.00 0.00 3.53
1281 1283 4.079787 TCCCTTTATTCCCATGTCTTCCAG 60.080 45.833 0.00 0.00 0.00 3.86
1282 1284 3.633986 CCTTTATTCCCATGTCTTCCAGC 59.366 47.826 0.00 0.00 0.00 4.85
1283 1285 4.530875 CTTTATTCCCATGTCTTCCAGCT 58.469 43.478 0.00 0.00 0.00 4.24
1284 1286 5.397899 CCTTTATTCCCATGTCTTCCAGCTA 60.398 44.000 0.00 0.00 0.00 3.32
1285 1287 3.567478 ATTCCCATGTCTTCCAGCTAC 57.433 47.619 0.00 0.00 0.00 3.58
1286 1288 2.254152 TCCCATGTCTTCCAGCTACT 57.746 50.000 0.00 0.00 0.00 2.57
1287 1289 2.551270 TCCCATGTCTTCCAGCTACTT 58.449 47.619 0.00 0.00 0.00 2.24
1288 1290 2.912956 TCCCATGTCTTCCAGCTACTTT 59.087 45.455 0.00 0.00 0.00 2.66
1289 1291 4.101114 TCCCATGTCTTCCAGCTACTTTA 58.899 43.478 0.00 0.00 0.00 1.85
1290 1292 4.721776 TCCCATGTCTTCCAGCTACTTTAT 59.278 41.667 0.00 0.00 0.00 1.40
1291 1293 5.059833 CCCATGTCTTCCAGCTACTTTATC 58.940 45.833 0.00 0.00 0.00 1.75
1292 1294 5.059833 CCATGTCTTCCAGCTACTTTATCC 58.940 45.833 0.00 0.00 0.00 2.59
1293 1295 4.755266 TGTCTTCCAGCTACTTTATCCC 57.245 45.455 0.00 0.00 0.00 3.85
1294 1296 4.101114 TGTCTTCCAGCTACTTTATCCCA 58.899 43.478 0.00 0.00 0.00 4.37
1295 1297 4.534500 TGTCTTCCAGCTACTTTATCCCAA 59.466 41.667 0.00 0.00 0.00 4.12
1296 1298 5.013704 TGTCTTCCAGCTACTTTATCCCAAA 59.986 40.000 0.00 0.00 0.00 3.28
1297 1299 5.354513 GTCTTCCAGCTACTTTATCCCAAAC 59.645 44.000 0.00 0.00 0.00 2.93
1298 1300 5.250774 TCTTCCAGCTACTTTATCCCAAACT 59.749 40.000 0.00 0.00 0.00 2.66
1299 1301 5.514500 TCCAGCTACTTTATCCCAAACTT 57.486 39.130 0.00 0.00 0.00 2.66
1300 1302 5.887754 TCCAGCTACTTTATCCCAAACTTT 58.112 37.500 0.00 0.00 0.00 2.66
1301 1303 5.710099 TCCAGCTACTTTATCCCAAACTTTG 59.290 40.000 0.00 0.00 0.00 2.77
1302 1304 5.710099 CCAGCTACTTTATCCCAAACTTTGA 59.290 40.000 2.87 0.00 0.00 2.69
1305 1307 8.306761 CAGCTACTTTATCCCAAACTTTGATTT 58.693 33.333 2.87 0.00 0.00 2.17
1478 1480 3.511146 CCAAGCATAAAACCCTCATGTGT 59.489 43.478 0.00 0.00 0.00 3.72
1584 1588 7.309867 GGTTTCTAGTCAGTGAGGAGTTCATAA 60.310 40.741 0.00 0.00 38.29 1.90
1767 1771 3.831911 GCTGAGGAGTATAAGGAGCAGAT 59.168 47.826 0.00 0.00 0.00 2.90
1944 1949 5.693961 TGTAAGTGATGATATGCACCCATT 58.306 37.500 0.00 0.00 35.67 3.16
1951 1956 7.288389 AGTGATGATATGCACCCATTTGTAATT 59.712 33.333 0.00 0.00 35.67 1.40
2171 2176 1.431488 CCTCGATGCCAATGACGTGG 61.431 60.000 0.00 0.00 42.05 4.94
2222 2227 1.191489 TCCCAGCATGACCAAGTCGA 61.191 55.000 0.00 0.00 39.69 4.20
2223 2228 1.021390 CCCAGCATGACCAAGTCGAC 61.021 60.000 7.70 7.70 39.69 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 247 6.054860 AGAAGTATATGTTGCTCAACCACT 57.945 37.500 9.92 5.71 40.46 4.00
359 360 4.342378 CCTGTTGCTAGACTTGAGGCTATA 59.658 45.833 0.00 0.00 0.00 1.31
389 390 6.314018 TGAAGGAATTGATTTCGATGAAACG 58.686 36.000 0.00 0.00 34.23 3.60
505 506 1.198408 CACGCAAGCACAACATCATCT 59.802 47.619 0.00 0.00 45.62 2.90
535 536 0.836606 TGTGTGGGAGCTTGTCAAGA 59.163 50.000 16.99 0.00 0.00 3.02
599 600 2.171237 AGCATTCATGGAATCCGAGTGA 59.829 45.455 4.38 1.72 28.87 3.41
702 703 2.449518 TGCACCAGGTCCCCTCAA 60.450 61.111 0.00 0.00 0.00 3.02
815 817 1.134128 TGGTGCTGCTGAAGAAAGTGA 60.134 47.619 0.00 0.00 0.00 3.41
818 820 0.240411 GCTGGTGCTGCTGAAGAAAG 59.760 55.000 0.00 0.00 36.03 2.62
846 848 7.499563 CAGAAGAAGTCATTCCTGATCATGAAT 59.500 37.037 17.54 17.54 35.94 2.57
914 916 4.487714 TGAGCAACCTGTTCTAATAGGG 57.512 45.455 9.91 0.00 41.18 3.53
915 917 5.355350 CCTTTGAGCAACCTGTTCTAATAGG 59.645 44.000 4.13 4.13 42.43 2.57
916 918 5.940470 ACCTTTGAGCAACCTGTTCTAATAG 59.060 40.000 0.00 0.00 0.00 1.73
917 919 5.705441 CACCTTTGAGCAACCTGTTCTAATA 59.295 40.000 0.00 0.00 0.00 0.98
918 920 4.520492 CACCTTTGAGCAACCTGTTCTAAT 59.480 41.667 0.00 0.00 0.00 1.73
919 921 3.882888 CACCTTTGAGCAACCTGTTCTAA 59.117 43.478 0.00 0.00 0.00 2.10
920 922 3.118038 ACACCTTTGAGCAACCTGTTCTA 60.118 43.478 0.00 0.00 0.00 2.10
921 923 2.301346 CACCTTTGAGCAACCTGTTCT 58.699 47.619 0.00 0.00 0.00 3.01
922 924 2.024414 ACACCTTTGAGCAACCTGTTC 58.976 47.619 0.00 0.00 0.00 3.18
923 925 2.024414 GACACCTTTGAGCAACCTGTT 58.976 47.619 0.00 0.00 0.00 3.16
924 926 1.680338 GACACCTTTGAGCAACCTGT 58.320 50.000 0.00 0.00 0.00 4.00
925 927 0.588252 CGACACCTTTGAGCAACCTG 59.412 55.000 0.00 0.00 0.00 4.00
926 928 1.166531 GCGACACCTTTGAGCAACCT 61.167 55.000 0.00 0.00 32.67 3.50
927 929 1.282875 GCGACACCTTTGAGCAACC 59.717 57.895 0.00 0.00 32.67 3.77
928 930 1.282875 GGCGACACCTTTGAGCAAC 59.717 57.895 0.00 0.00 33.58 4.17
929 931 3.744559 GGCGACACCTTTGAGCAA 58.255 55.556 0.00 0.00 33.58 3.91
938 940 0.321653 ATGGAAGAACAGGCGACACC 60.322 55.000 0.00 0.00 39.61 4.16
939 941 1.079503 GATGGAAGAACAGGCGACAC 58.920 55.000 0.00 0.00 0.00 3.67
940 942 0.684535 TGATGGAAGAACAGGCGACA 59.315 50.000 0.00 0.00 0.00 4.35
941 943 1.808411 TTGATGGAAGAACAGGCGAC 58.192 50.000 0.00 0.00 0.00 5.19
942 944 2.559698 TTTGATGGAAGAACAGGCGA 57.440 45.000 0.00 0.00 0.00 5.54
943 945 5.297776 AGAATATTTGATGGAAGAACAGGCG 59.702 40.000 0.00 0.00 0.00 5.52
944 946 6.501781 CAGAATATTTGATGGAAGAACAGGC 58.498 40.000 0.00 0.00 0.00 4.85
945 947 6.320672 AGCAGAATATTTGATGGAAGAACAGG 59.679 38.462 0.00 0.00 0.00 4.00
946 948 7.330900 AGCAGAATATTTGATGGAAGAACAG 57.669 36.000 0.00 0.00 0.00 3.16
947 949 7.707624 AAGCAGAATATTTGATGGAAGAACA 57.292 32.000 0.00 0.00 0.00 3.18
948 950 8.992835 AAAAGCAGAATATTTGATGGAAGAAC 57.007 30.769 0.00 0.00 0.00 3.01
949 951 9.643693 GAAAAAGCAGAATATTTGATGGAAGAA 57.356 29.630 0.00 0.00 0.00 2.52
950 952 8.253113 GGAAAAAGCAGAATATTTGATGGAAGA 58.747 33.333 0.00 0.00 0.00 2.87
951 953 7.493645 GGGAAAAAGCAGAATATTTGATGGAAG 59.506 37.037 0.00 0.00 0.00 3.46
952 954 7.330262 GGGAAAAAGCAGAATATTTGATGGAA 58.670 34.615 0.00 0.00 0.00 3.53
953 955 6.405731 CGGGAAAAAGCAGAATATTTGATGGA 60.406 38.462 0.00 0.00 0.00 3.41
954 956 5.750067 CGGGAAAAAGCAGAATATTTGATGG 59.250 40.000 0.00 0.00 0.00 3.51
955 957 5.750067 CCGGGAAAAAGCAGAATATTTGATG 59.250 40.000 0.00 0.00 0.00 3.07
956 958 5.163416 CCCGGGAAAAAGCAGAATATTTGAT 60.163 40.000 18.48 0.00 0.00 2.57
957 959 4.159506 CCCGGGAAAAAGCAGAATATTTGA 59.840 41.667 18.48 0.00 0.00 2.69
958 960 4.081697 ACCCGGGAAAAAGCAGAATATTTG 60.082 41.667 32.02 0.00 0.00 2.32
959 961 4.093743 ACCCGGGAAAAAGCAGAATATTT 58.906 39.130 32.02 0.00 0.00 1.40
960 962 3.708451 ACCCGGGAAAAAGCAGAATATT 58.292 40.909 32.02 0.00 0.00 1.28
961 963 3.382083 ACCCGGGAAAAAGCAGAATAT 57.618 42.857 32.02 0.00 0.00 1.28
962 964 2.891191 ACCCGGGAAAAAGCAGAATA 57.109 45.000 32.02 0.00 0.00 1.75
963 965 2.041216 AGTACCCGGGAAAAAGCAGAAT 59.959 45.455 32.02 1.34 0.00 2.40
964 966 1.422402 AGTACCCGGGAAAAAGCAGAA 59.578 47.619 32.02 0.00 0.00 3.02
965 967 1.002773 GAGTACCCGGGAAAAAGCAGA 59.997 52.381 32.02 0.00 0.00 4.26
966 968 1.450025 GAGTACCCGGGAAAAAGCAG 58.550 55.000 32.02 0.00 0.00 4.24
967 969 0.320946 CGAGTACCCGGGAAAAAGCA 60.321 55.000 32.02 0.00 0.00 3.91
968 970 1.022982 CCGAGTACCCGGGAAAAAGC 61.023 60.000 32.02 10.12 45.43 3.51
969 971 3.148340 CCGAGTACCCGGGAAAAAG 57.852 57.895 32.02 15.13 45.43 2.27
977 979 2.543641 GTATTTGAACCCGAGTACCCG 58.456 52.381 0.00 0.00 0.00 5.28
978 980 2.910199 GGTATTTGAACCCGAGTACCC 58.090 52.381 0.00 0.00 34.58 3.69
1018 1020 9.679661 TGTTTTCAGAATTATATGAAGCCAGTA 57.320 29.630 0.00 0.00 37.99 2.74
1019 1021 8.462016 GTGTTTTCAGAATTATATGAAGCCAGT 58.538 33.333 0.00 0.00 37.99 4.00
1020 1022 8.461222 TGTGTTTTCAGAATTATATGAAGCCAG 58.539 33.333 0.00 0.00 37.99 4.85
1021 1023 8.347004 TGTGTTTTCAGAATTATATGAAGCCA 57.653 30.769 0.00 1.26 37.99 4.75
1022 1024 9.294030 CTTGTGTTTTCAGAATTATATGAAGCC 57.706 33.333 0.00 0.00 37.99 4.35
1023 1025 9.846248 ACTTGTGTTTTCAGAATTATATGAAGC 57.154 29.630 0.00 0.00 37.99 3.86
1041 1043 4.706962 AGAGGCTTCAAGAAAACTTGTGTT 59.293 37.500 0.00 0.00 38.16 3.32
1042 1044 4.273318 AGAGGCTTCAAGAAAACTTGTGT 58.727 39.130 0.00 0.00 35.91 3.72
1043 1045 4.907879 AGAGGCTTCAAGAAAACTTGTG 57.092 40.909 0.00 5.89 35.91 3.33
1044 1046 4.440663 GCAAGAGGCTTCAAGAAAACTTGT 60.441 41.667 0.00 0.00 40.25 3.16
1045 1047 4.047142 GCAAGAGGCTTCAAGAAAACTTG 58.953 43.478 0.00 0.00 40.25 3.16
1046 1048 4.313277 GCAAGAGGCTTCAAGAAAACTT 57.687 40.909 0.00 0.00 40.25 2.66
1047 1049 3.998099 GCAAGAGGCTTCAAGAAAACT 57.002 42.857 0.00 0.00 40.25 2.66
1059 1061 4.021280 TGATGAGAGATATGAGCAAGAGGC 60.021 45.833 0.00 0.00 45.30 4.70
1060 1062 5.725325 TGATGAGAGATATGAGCAAGAGG 57.275 43.478 0.00 0.00 0.00 3.69
1061 1063 6.647481 CCTTTGATGAGAGATATGAGCAAGAG 59.353 42.308 0.00 0.00 0.00 2.85
1062 1064 6.464039 CCCTTTGATGAGAGATATGAGCAAGA 60.464 42.308 0.00 0.00 0.00 3.02
1063 1065 5.701750 CCCTTTGATGAGAGATATGAGCAAG 59.298 44.000 0.00 0.00 0.00 4.01
1064 1066 5.131642 ACCCTTTGATGAGAGATATGAGCAA 59.868 40.000 0.00 0.00 0.00 3.91
1065 1067 4.657504 ACCCTTTGATGAGAGATATGAGCA 59.342 41.667 0.00 0.00 0.00 4.26
1066 1068 4.996122 CACCCTTTGATGAGAGATATGAGC 59.004 45.833 0.00 0.00 0.00 4.26
1067 1069 4.996122 GCACCCTTTGATGAGAGATATGAG 59.004 45.833 0.00 0.00 0.00 2.90
1068 1070 4.657504 AGCACCCTTTGATGAGAGATATGA 59.342 41.667 0.00 0.00 0.00 2.15
1069 1071 4.970711 AGCACCCTTTGATGAGAGATATG 58.029 43.478 0.00 0.00 0.00 1.78
1070 1072 6.949117 ATAGCACCCTTTGATGAGAGATAT 57.051 37.500 0.00 0.00 0.00 1.63
1071 1073 6.753913 AATAGCACCCTTTGATGAGAGATA 57.246 37.500 0.00 0.00 0.00 1.98
1072 1074 5.643421 AATAGCACCCTTTGATGAGAGAT 57.357 39.130 0.00 0.00 0.00 2.75
1073 1075 6.753913 ATAATAGCACCCTTTGATGAGAGA 57.246 37.500 0.00 0.00 0.00 3.10
1094 1096 9.959721 GGGGATCTGCTAAAGAAACATTATATA 57.040 33.333 0.00 0.00 38.79 0.86
1095 1097 7.890655 GGGGGATCTGCTAAAGAAACATTATAT 59.109 37.037 0.00 0.00 38.79 0.86
1096 1098 7.231467 GGGGGATCTGCTAAAGAAACATTATA 58.769 38.462 0.00 0.00 38.79 0.98
1097 1099 6.071320 GGGGGATCTGCTAAAGAAACATTAT 58.929 40.000 0.00 0.00 38.79 1.28
1098 1100 5.445964 GGGGGATCTGCTAAAGAAACATTA 58.554 41.667 0.00 0.00 38.79 1.90
1099 1101 4.281657 GGGGGATCTGCTAAAGAAACATT 58.718 43.478 0.00 0.00 38.79 2.71
1100 1102 3.685550 CGGGGGATCTGCTAAAGAAACAT 60.686 47.826 0.00 0.00 38.79 2.71
1101 1103 2.355716 CGGGGGATCTGCTAAAGAAACA 60.356 50.000 0.00 0.00 38.79 2.83
1102 1104 2.289565 CGGGGGATCTGCTAAAGAAAC 58.710 52.381 0.00 0.00 38.79 2.78
1103 1105 1.913419 ACGGGGGATCTGCTAAAGAAA 59.087 47.619 0.00 0.00 38.79 2.52
1104 1106 1.580059 ACGGGGGATCTGCTAAAGAA 58.420 50.000 0.00 0.00 38.79 2.52
1105 1107 1.580059 AACGGGGGATCTGCTAAAGA 58.420 50.000 0.00 0.00 39.94 2.52
1106 1108 3.553828 TTAACGGGGGATCTGCTAAAG 57.446 47.619 0.00 0.00 0.00 1.85
1107 1109 3.181448 GGATTAACGGGGGATCTGCTAAA 60.181 47.826 0.00 0.00 0.00 1.85
1108 1110 2.370849 GGATTAACGGGGGATCTGCTAA 59.629 50.000 0.00 0.00 0.00 3.09
1109 1111 1.975680 GGATTAACGGGGGATCTGCTA 59.024 52.381 0.00 0.00 0.00 3.49
1110 1112 0.765510 GGATTAACGGGGGATCTGCT 59.234 55.000 0.00 0.00 0.00 4.24
1111 1113 0.602905 CGGATTAACGGGGGATCTGC 60.603 60.000 0.00 0.00 0.00 4.26
1112 1114 1.000955 CTCGGATTAACGGGGGATCTG 59.999 57.143 0.00 0.00 0.00 2.90
1113 1115 1.339097 CTCGGATTAACGGGGGATCT 58.661 55.000 0.00 0.00 0.00 2.75
1114 1116 0.320508 GCTCGGATTAACGGGGGATC 60.321 60.000 0.00 0.00 34.20 3.36
1115 1117 1.052124 TGCTCGGATTAACGGGGGAT 61.052 55.000 0.00 0.00 34.20 3.85
1116 1118 1.266160 TTGCTCGGATTAACGGGGGA 61.266 55.000 0.00 0.00 34.20 4.81
1117 1119 0.393267 TTTGCTCGGATTAACGGGGG 60.393 55.000 0.00 0.00 34.20 5.40
1118 1120 0.730840 GTTTGCTCGGATTAACGGGG 59.269 55.000 0.00 0.00 34.20 5.73
1119 1121 1.734163 AGTTTGCTCGGATTAACGGG 58.266 50.000 0.00 0.00 37.41 5.28
1120 1122 3.187637 TGAAAGTTTGCTCGGATTAACGG 59.812 43.478 0.00 0.00 0.00 4.44
1121 1123 4.398549 TGAAAGTTTGCTCGGATTAACG 57.601 40.909 0.00 0.00 0.00 3.18
1122 1124 8.911247 ATATTTGAAAGTTTGCTCGGATTAAC 57.089 30.769 0.00 0.00 0.00 2.01
1123 1125 9.921637 AAATATTTGAAAGTTTGCTCGGATTAA 57.078 25.926 0.00 0.00 0.00 1.40
1124 1126 9.352784 CAAATATTTGAAAGTTTGCTCGGATTA 57.647 29.630 21.35 0.00 40.55 1.75
1125 1127 7.872483 ACAAATATTTGAAAGTTTGCTCGGATT 59.128 29.630 30.18 3.15 40.55 3.01
1126 1128 7.378181 ACAAATATTTGAAAGTTTGCTCGGAT 58.622 30.769 30.18 3.50 40.55 4.18
1127 1129 6.744112 ACAAATATTTGAAAGTTTGCTCGGA 58.256 32.000 30.18 0.00 40.55 4.55
1128 1130 6.089417 GGACAAATATTTGAAAGTTTGCTCGG 59.911 38.462 30.18 3.44 40.55 4.63
1129 1131 6.089417 GGGACAAATATTTGAAAGTTTGCTCG 59.911 38.462 30.18 3.84 40.55 5.03
1130 1132 6.928492 TGGGACAAATATTTGAAAGTTTGCTC 59.072 34.615 30.18 15.51 40.55 4.26
1131 1133 6.705825 GTGGGACAAATATTTGAAAGTTTGCT 59.294 34.615 30.18 8.30 44.16 3.91
1132 1134 6.481644 TGTGGGACAAATATTTGAAAGTTTGC 59.518 34.615 30.18 14.30 44.16 3.68
1133 1135 8.606040 ATGTGGGACAAATATTTGAAAGTTTG 57.394 30.769 30.18 13.56 44.16 2.93
1134 1136 9.271828 GAATGTGGGACAAATATTTGAAAGTTT 57.728 29.630 30.18 15.60 44.16 2.66
1135 1137 8.428063 TGAATGTGGGACAAATATTTGAAAGTT 58.572 29.630 30.18 15.98 44.16 2.66
1136 1138 7.961351 TGAATGTGGGACAAATATTTGAAAGT 58.039 30.769 30.18 11.40 44.16 2.66
1137 1139 9.439500 AATGAATGTGGGACAAATATTTGAAAG 57.561 29.630 30.18 8.26 44.16 2.62
1138 1140 9.434420 GAATGAATGTGGGACAAATATTTGAAA 57.566 29.630 30.18 12.34 44.16 2.69
1139 1141 7.758980 CGAATGAATGTGGGACAAATATTTGAA 59.241 33.333 30.18 12.65 44.16 2.69
1140 1142 7.257003 CGAATGAATGTGGGACAAATATTTGA 58.743 34.615 30.18 10.72 44.16 2.69
1141 1143 6.476380 CCGAATGAATGTGGGACAAATATTTG 59.524 38.462 23.60 23.60 44.16 2.32
1142 1144 6.406849 CCCGAATGAATGTGGGACAAATATTT 60.407 38.462 0.00 0.00 44.88 1.40
1143 1145 5.068987 CCCGAATGAATGTGGGACAAATATT 59.931 40.000 0.00 0.00 44.88 1.28
1144 1146 4.584325 CCCGAATGAATGTGGGACAAATAT 59.416 41.667 0.00 0.00 44.88 1.28
1145 1147 3.951037 CCCGAATGAATGTGGGACAAATA 59.049 43.478 0.00 0.00 44.88 1.40
1146 1148 2.760092 CCCGAATGAATGTGGGACAAAT 59.240 45.455 0.00 0.00 44.88 2.32
1147 1149 2.166829 CCCGAATGAATGTGGGACAAA 58.833 47.619 0.00 0.00 44.88 2.83
1148 1150 1.352687 TCCCGAATGAATGTGGGACAA 59.647 47.619 0.00 0.00 45.66 3.18
1149 1151 0.988063 TCCCGAATGAATGTGGGACA 59.012 50.000 0.00 0.00 45.66 4.02
1150 1152 1.668419 CTCCCGAATGAATGTGGGAC 58.332 55.000 0.00 0.00 45.66 4.46
1152 1154 0.466189 CCCTCCCGAATGAATGTGGG 60.466 60.000 0.00 0.00 43.36 4.61
1153 1155 0.255890 ACCCTCCCGAATGAATGTGG 59.744 55.000 0.00 0.00 0.00 4.17
1154 1156 2.170607 AGTACCCTCCCGAATGAATGTG 59.829 50.000 0.00 0.00 0.00 3.21
1155 1157 2.434702 GAGTACCCTCCCGAATGAATGT 59.565 50.000 0.00 0.00 0.00 2.71
1156 1158 3.113260 GAGTACCCTCCCGAATGAATG 57.887 52.381 0.00 0.00 0.00 2.67
1176 1178 6.439636 TGATATGGTCTTCAATCCCTTAGG 57.560 41.667 0.00 0.00 0.00 2.69
1177 1179 6.425114 CGTTGATATGGTCTTCAATCCCTTAG 59.575 42.308 0.00 0.00 34.60 2.18
1178 1180 6.288294 CGTTGATATGGTCTTCAATCCCTTA 58.712 40.000 0.00 0.00 34.60 2.69
1179 1181 5.126067 CGTTGATATGGTCTTCAATCCCTT 58.874 41.667 0.00 0.00 34.60 3.95
1180 1182 4.444876 CCGTTGATATGGTCTTCAATCCCT 60.445 45.833 0.00 0.00 34.60 4.20
1181 1183 3.815401 CCGTTGATATGGTCTTCAATCCC 59.185 47.826 0.00 0.00 34.60 3.85
1182 1184 3.815401 CCCGTTGATATGGTCTTCAATCC 59.185 47.826 0.00 0.00 34.60 3.01
1183 1185 4.273480 CACCCGTTGATATGGTCTTCAATC 59.727 45.833 0.00 0.00 34.60 2.67
1184 1186 4.199310 CACCCGTTGATATGGTCTTCAAT 58.801 43.478 0.00 0.00 34.60 2.57
1185 1187 3.008594 ACACCCGTTGATATGGTCTTCAA 59.991 43.478 0.00 0.00 0.00 2.69
1186 1188 2.569853 ACACCCGTTGATATGGTCTTCA 59.430 45.455 0.00 0.00 0.00 3.02
1187 1189 3.261981 ACACCCGTTGATATGGTCTTC 57.738 47.619 0.00 0.00 0.00 2.87
1188 1190 3.606687 GAACACCCGTTGATATGGTCTT 58.393 45.455 0.00 0.00 34.75 3.01
1189 1191 2.093128 GGAACACCCGTTGATATGGTCT 60.093 50.000 0.00 0.00 34.75 3.85
1190 1192 2.285977 GGAACACCCGTTGATATGGTC 58.714 52.381 0.00 0.00 34.75 4.02
1191 1193 1.631388 TGGAACACCCGTTGATATGGT 59.369 47.619 0.00 0.00 34.75 3.55
1192 1194 2.411628 TGGAACACCCGTTGATATGG 57.588 50.000 0.00 0.00 34.75 2.74
1204 1206 5.886096 TGCCCTATTTGCAAGATGGAACAC 61.886 45.833 13.10 3.58 37.07 3.32
1205 1207 3.817205 TGCCCTATTTGCAAGATGGAACA 60.817 43.478 13.10 9.09 38.35 3.18
1206 1208 2.760092 TGCCCTATTTGCAAGATGGAAC 59.240 45.455 13.10 7.21 35.40 3.62
1207 1209 3.098774 TGCCCTATTTGCAAGATGGAA 57.901 42.857 13.10 0.24 35.40 3.53
1208 1210 2.824689 TGCCCTATTTGCAAGATGGA 57.175 45.000 13.10 0.00 35.40 3.41
1209 1211 5.014858 AGATATGCCCTATTTGCAAGATGG 58.985 41.667 0.00 3.03 42.92 3.51
1210 1212 6.387465 CAAGATATGCCCTATTTGCAAGATG 58.613 40.000 0.00 0.00 42.92 2.90
1211 1213 6.585695 CAAGATATGCCCTATTTGCAAGAT 57.414 37.500 0.00 0.00 42.92 2.40
1234 1236 7.011389 GGATCATTTACAAAATTTTGCCTAGGC 59.989 37.037 27.71 27.71 41.79 3.93
1235 1237 7.495606 GGGATCATTTACAAAATTTTGCCTAGG 59.504 37.037 26.94 15.71 41.79 3.02
1236 1238 8.260114 AGGGATCATTTACAAAATTTTGCCTAG 58.740 33.333 26.94 15.07 41.79 3.02
1237 1239 8.144862 AGGGATCATTTACAAAATTTTGCCTA 57.855 30.769 26.94 12.78 41.79 3.93
1238 1240 7.019656 AGGGATCATTTACAAAATTTTGCCT 57.980 32.000 26.94 18.94 41.79 4.75
1239 1241 7.686438 AAGGGATCATTTACAAAATTTTGCC 57.314 32.000 26.94 17.70 41.79 4.52
1245 1247 9.278011 TGGGAATAAAGGGATCATTTACAAAAT 57.722 29.630 0.00 0.00 0.00 1.82
1246 1248 8.671987 TGGGAATAAAGGGATCATTTACAAAA 57.328 30.769 0.00 0.00 0.00 2.44
1247 1249 8.703743 CATGGGAATAAAGGGATCATTTACAAA 58.296 33.333 0.00 0.00 0.00 2.83
1248 1250 7.843760 ACATGGGAATAAAGGGATCATTTACAA 59.156 33.333 0.00 0.00 0.00 2.41
1249 1251 7.361438 ACATGGGAATAAAGGGATCATTTACA 58.639 34.615 0.00 0.00 0.00 2.41
1250 1252 7.725844 AGACATGGGAATAAAGGGATCATTTAC 59.274 37.037 0.00 0.00 0.00 2.01
1251 1253 7.825709 AGACATGGGAATAAAGGGATCATTTA 58.174 34.615 0.00 0.00 0.00 1.40
1252 1254 6.686544 AGACATGGGAATAAAGGGATCATTT 58.313 36.000 0.00 0.00 0.00 2.32
1253 1255 6.285329 AGACATGGGAATAAAGGGATCATT 57.715 37.500 0.00 0.00 0.00 2.57
1254 1256 5.937492 AGACATGGGAATAAAGGGATCAT 57.063 39.130 0.00 0.00 0.00 2.45
1255 1257 5.399038 GGAAGACATGGGAATAAAGGGATCA 60.399 44.000 0.00 0.00 0.00 2.92
1256 1258 5.073428 GGAAGACATGGGAATAAAGGGATC 58.927 45.833 0.00 0.00 0.00 3.36
1257 1259 4.482025 TGGAAGACATGGGAATAAAGGGAT 59.518 41.667 0.00 0.00 0.00 3.85
1258 1260 3.855599 TGGAAGACATGGGAATAAAGGGA 59.144 43.478 0.00 0.00 0.00 4.20
1259 1261 4.210331 CTGGAAGACATGGGAATAAAGGG 58.790 47.826 0.00 0.00 34.07 3.95
1260 1262 3.633986 GCTGGAAGACATGGGAATAAAGG 59.366 47.826 0.00 0.00 34.07 3.11
1261 1263 4.530875 AGCTGGAAGACATGGGAATAAAG 58.469 43.478 0.00 0.00 34.07 1.85
1262 1264 4.591321 AGCTGGAAGACATGGGAATAAA 57.409 40.909 0.00 0.00 34.07 1.40
1263 1265 4.721776 AGTAGCTGGAAGACATGGGAATAA 59.278 41.667 0.00 0.00 34.07 1.40
1264 1266 4.298626 AGTAGCTGGAAGACATGGGAATA 58.701 43.478 0.00 0.00 34.07 1.75
1265 1267 3.118531 AGTAGCTGGAAGACATGGGAAT 58.881 45.455 0.00 0.00 34.07 3.01
1266 1268 2.551270 AGTAGCTGGAAGACATGGGAA 58.449 47.619 0.00 0.00 34.07 3.97
1267 1269 2.254152 AGTAGCTGGAAGACATGGGA 57.746 50.000 0.00 0.00 34.07 4.37
1268 1270 3.356529 AAAGTAGCTGGAAGACATGGG 57.643 47.619 0.00 0.00 34.07 4.00
1269 1271 5.059833 GGATAAAGTAGCTGGAAGACATGG 58.940 45.833 0.00 0.00 34.07 3.66
1270 1272 5.059833 GGGATAAAGTAGCTGGAAGACATG 58.940 45.833 0.00 0.00 34.07 3.21
1271 1273 4.721776 TGGGATAAAGTAGCTGGAAGACAT 59.278 41.667 0.00 0.00 34.07 3.06
1272 1274 4.101114 TGGGATAAAGTAGCTGGAAGACA 58.899 43.478 0.00 0.00 34.07 3.41
1273 1275 4.755266 TGGGATAAAGTAGCTGGAAGAC 57.245 45.455 0.00 0.00 34.07 3.01
1274 1276 5.250774 AGTTTGGGATAAAGTAGCTGGAAGA 59.749 40.000 0.00 0.00 34.07 2.87
1275 1277 5.501156 AGTTTGGGATAAAGTAGCTGGAAG 58.499 41.667 0.00 0.00 0.00 3.46
1276 1278 5.514500 AGTTTGGGATAAAGTAGCTGGAA 57.486 39.130 0.00 0.00 0.00 3.53
1277 1279 5.514500 AAGTTTGGGATAAAGTAGCTGGA 57.486 39.130 0.00 0.00 0.00 3.86
1278 1280 5.710099 TCAAAGTTTGGGATAAAGTAGCTGG 59.290 40.000 15.47 0.00 0.00 4.85
1279 1281 6.817765 TCAAAGTTTGGGATAAAGTAGCTG 57.182 37.500 15.47 0.00 0.00 4.24
1280 1282 8.422577 AAATCAAAGTTTGGGATAAAGTAGCT 57.577 30.769 15.47 0.00 0.00 3.32
1284 1286 9.320295 TCCATAAATCAAAGTTTGGGATAAAGT 57.680 29.630 15.47 0.00 0.00 2.66
1288 1290 8.923270 GGAATCCATAAATCAAAGTTTGGGATA 58.077 33.333 15.47 6.68 36.45 2.59
1289 1291 7.624879 AGGAATCCATAAATCAAAGTTTGGGAT 59.375 33.333 15.47 14.12 37.78 3.85
1290 1292 6.959366 AGGAATCCATAAATCAAAGTTTGGGA 59.041 34.615 15.47 12.57 33.41 4.37
1291 1293 7.093377 TGAGGAATCCATAAATCAAAGTTTGGG 60.093 37.037 15.47 7.74 0.00 4.12
1292 1294 7.839907 TGAGGAATCCATAAATCAAAGTTTGG 58.160 34.615 15.47 0.00 0.00 3.28
1293 1295 7.977853 CCTGAGGAATCCATAAATCAAAGTTTG 59.022 37.037 9.44 9.44 0.00 2.93
1294 1296 7.675619 ACCTGAGGAATCCATAAATCAAAGTTT 59.324 33.333 4.99 0.00 0.00 2.66
1295 1297 7.123247 CACCTGAGGAATCCATAAATCAAAGTT 59.877 37.037 4.99 0.00 0.00 2.66
1296 1298 6.604795 CACCTGAGGAATCCATAAATCAAAGT 59.395 38.462 4.99 0.00 0.00 2.66
1297 1299 6.830324 TCACCTGAGGAATCCATAAATCAAAG 59.170 38.462 4.99 0.00 0.00 2.77
1298 1300 6.603201 GTCACCTGAGGAATCCATAAATCAAA 59.397 38.462 4.99 0.00 0.00 2.69
1299 1301 6.122277 GTCACCTGAGGAATCCATAAATCAA 58.878 40.000 4.99 0.00 0.00 2.57
1300 1302 5.191522 TGTCACCTGAGGAATCCATAAATCA 59.808 40.000 4.99 0.00 0.00 2.57
1301 1303 5.684704 TGTCACCTGAGGAATCCATAAATC 58.315 41.667 4.99 0.00 0.00 2.17
1302 1304 5.715439 TGTCACCTGAGGAATCCATAAAT 57.285 39.130 4.99 0.00 0.00 1.40
1305 1307 5.191522 TGAAATGTCACCTGAGGAATCCATA 59.808 40.000 4.99 0.00 0.00 2.74
1478 1480 5.759506 TCACTCTAAATTTGCACCGAAAA 57.240 34.783 0.00 0.00 0.00 2.29
1531 1534 9.878599 CAATGTAAGTTATTTCAAAGTCTTCGT 57.121 29.630 0.00 0.00 0.00 3.85
1565 1569 4.709397 CCTCTTATGAACTCCTCACTGACT 59.291 45.833 0.00 0.00 36.69 3.41
1584 1588 7.645058 TCACAAATTCTTCAAAAAGACCTCT 57.355 32.000 0.00 0.00 41.23 3.69
1657 1661 1.808945 CAAGACGCCTCAGCATTTCTT 59.191 47.619 0.00 0.00 39.83 2.52
2171 2176 3.550275 TGCATACACTCGCGAAGAATAAC 59.450 43.478 11.33 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.