Multiple sequence alignment - TraesCS6B01G305500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G305500 chr6B 100.000 4747 0 0 1 4747 548385941 548381195 0.000000e+00 8767.0
1 TraesCS6B01G305500 chr6B 87.500 320 30 5 1355 1673 548384525 548384215 1.260000e-95 361.0
2 TraesCS6B01G305500 chr6B 87.500 320 30 5 1417 1727 548384587 548384269 1.260000e-95 361.0
3 TraesCS6B01G305500 chr6B 89.103 156 16 1 1355 1509 548384462 548384307 4.850000e-45 193.0
4 TraesCS6B01G305500 chr6B 89.103 156 16 1 1480 1635 548384587 548384433 4.850000e-45 193.0
5 TraesCS6B01G305500 chr6B 89.888 89 5 4 4662 4747 339353643 339353730 1.400000e-20 111.0
6 TraesCS6B01G305500 chr6A 89.226 3165 188 69 1417 4515 504624963 504621886 0.000000e+00 3814.0
7 TraesCS6B01G305500 chr6A 85.613 1550 89 56 171 1673 504626128 504624666 0.000000e+00 1504.0
8 TraesCS6B01G305500 chr6A 86.454 251 24 5 1480 1727 504624963 504624720 2.820000e-67 267.0
9 TraesCS6B01G305500 chr6A 83.246 191 25 4 1543 1727 504624963 504624774 8.170000e-38 169.0
10 TraesCS6B01G305500 chr6D 89.895 3048 150 68 171 3174 363598488 363595555 0.000000e+00 3777.0
11 TraesCS6B01G305500 chr6D 88.989 890 54 25 3269 4130 363595186 363594313 0.000000e+00 1061.0
12 TraesCS6B01G305500 chr6D 84.055 439 21 14 4118 4545 363594008 363593608 1.250000e-100 377.0
13 TraesCS6B01G305500 chr6D 86.562 320 27 6 1417 1727 363597349 363597037 5.880000e-89 339.0
14 TraesCS6B01G305500 chr6D 85.938 320 35 5 1355 1673 363597293 363596983 2.740000e-87 333.0
15 TraesCS6B01G305500 chr6D 91.026 156 7 2 1480 1635 363597349 363597201 2.240000e-48 204.0
16 TraesCS6B01G305500 chr6D 80.702 171 15 8 1575 1727 363597324 363597154 3.000000e-22 117.0
17 TraesCS6B01G305500 chr7A 85.277 883 124 6 1681 2558 194324648 194323767 0.000000e+00 905.0
18 TraesCS6B01G305500 chr7A 78.844 865 153 25 1682 2522 573128270 573127412 1.490000e-154 556.0
19 TraesCS6B01G305500 chr7A 90.805 87 4 4 4664 4747 616935455 616935540 3.880000e-21 113.0
20 TraesCS6B01G305500 chr7A 88.506 87 6 4 4664 4747 49046417 49046502 8.400000e-18 102.0
21 TraesCS6B01G305500 chr7B 84.938 883 127 6 1681 2558 334322216 334323097 0.000000e+00 889.0
22 TraesCS6B01G305500 chr7B 79.647 850 139 30 1682 2508 533614607 533613769 8.860000e-162 580.0
23 TraesCS6B01G305500 chr7D 84.859 885 124 9 1681 2558 189430231 189431112 0.000000e+00 883.0
24 TraesCS6B01G305500 chr7D 79.034 849 146 27 1682 2508 505616503 505615665 1.930000e-153 553.0
25 TraesCS6B01G305500 chr4A 91.765 85 5 1 4665 4747 671649030 671648946 3.000000e-22 117.0
26 TraesCS6B01G305500 chr4A 97.059 34 0 1 4633 4666 521543313 521543345 6.640000e-04 56.5
27 TraesCS6B01G305500 chr1B 91.765 85 5 1 4665 4747 18112404 18112488 3.000000e-22 117.0
28 TraesCS6B01G305500 chr1B 89.412 85 7 1 4665 4747 327340591 327340507 6.500000e-19 106.0
29 TraesCS6B01G305500 chr2A 88.506 87 8 1 4663 4747 17927480 17927566 2.340000e-18 104.0
30 TraesCS6B01G305500 chr2D 88.506 87 7 3 4663 4747 509477743 509477658 8.400000e-18 102.0
31 TraesCS6B01G305500 chr2D 96.774 31 1 0 4639 4669 266815098 266815068 9.000000e-03 52.8
32 TraesCS6B01G305500 chr2B 88.372 86 8 2 4664 4747 240186323 240186238 8.400000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G305500 chr6B 548381195 548385941 4746 True 1975.000000 8767 90.641200 1 4747 5 chr6B.!!$R1 4746
1 TraesCS6B01G305500 chr6A 504621886 504626128 4242 True 1438.500000 3814 86.134750 171 4515 4 chr6A.!!$R1 4344
2 TraesCS6B01G305500 chr6D 363593608 363598488 4880 True 886.857143 3777 86.738143 171 4545 7 chr6D.!!$R1 4374
3 TraesCS6B01G305500 chr7A 194323767 194324648 881 True 905.000000 905 85.277000 1681 2558 1 chr7A.!!$R1 877
4 TraesCS6B01G305500 chr7A 573127412 573128270 858 True 556.000000 556 78.844000 1682 2522 1 chr7A.!!$R2 840
5 TraesCS6B01G305500 chr7B 334322216 334323097 881 False 889.000000 889 84.938000 1681 2558 1 chr7B.!!$F1 877
6 TraesCS6B01G305500 chr7B 533613769 533614607 838 True 580.000000 580 79.647000 1682 2508 1 chr7B.!!$R1 826
7 TraesCS6B01G305500 chr7D 189430231 189431112 881 False 883.000000 883 84.859000 1681 2558 1 chr7D.!!$F1 877
8 TraesCS6B01G305500 chr7D 505615665 505616503 838 True 553.000000 553 79.034000 1682 2508 1 chr7D.!!$R1 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 886 0.384669 GATAACCAGGACGGACGGAG 59.615 60.0 0.0 0.0 38.63 4.63 F
1517 1635 0.249573 GAGGACCCGAACACGAACAA 60.250 55.0 0.0 0.0 0.00 2.83 F
1518 1636 0.249741 AGGACCCGAACACGAACAAG 60.250 55.0 0.0 0.0 0.00 3.16 F
3366 3825 0.731514 GCAACGACGTGATCCGAAGA 60.732 55.0 0.0 0.0 40.70 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2653 2795 0.529378 GCATTTCCAACCAGCCTGAG 59.471 55.000 0.00 0.00 0.00 3.35 R
3381 3840 0.247814 CTGCATCGTCGGTGAAATGC 60.248 55.000 10.33 9.22 43.71 3.56 R
3521 3980 3.434319 TGCGTCGACCTCCCGTAC 61.434 66.667 10.58 0.00 0.00 3.67 R
4558 5402 0.035056 AGCAAATCCCAGGTCCGAAG 60.035 55.000 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.703558 AAAAATGTTTAATGCGCGCTG 57.296 38.095 33.29 0.00 0.00 5.18
48 49 2.346099 AAATGTTTAATGCGCGCTGT 57.654 40.000 33.29 21.71 0.00 4.40
49 50 3.479505 AAATGTTTAATGCGCGCTGTA 57.520 38.095 33.29 20.59 0.00 2.74
50 51 3.691049 AATGTTTAATGCGCGCTGTAT 57.309 38.095 33.29 15.22 0.00 2.29
51 52 3.691049 ATGTTTAATGCGCGCTGTATT 57.309 38.095 33.29 24.51 36.76 1.89
52 53 3.479505 TGTTTAATGCGCGCTGTATTT 57.520 38.095 33.29 18.62 34.50 1.40
53 54 3.827625 TGTTTAATGCGCGCTGTATTTT 58.172 36.364 33.29 16.94 34.50 1.82
54 55 4.230657 TGTTTAATGCGCGCTGTATTTTT 58.769 34.783 33.29 15.30 34.50 1.94
55 56 4.089208 TGTTTAATGCGCGCTGTATTTTTG 59.911 37.500 33.29 0.00 34.50 2.44
56 57 0.991344 AATGCGCGCTGTATTTTTGC 59.009 45.000 33.29 0.00 27.16 3.68
60 61 2.979036 CGCTGTATTTTTGCGCGC 59.021 55.556 27.26 27.26 43.08 6.86
61 62 1.511887 CGCTGTATTTTTGCGCGCT 60.512 52.632 33.29 14.40 43.08 5.92
62 63 1.723115 CGCTGTATTTTTGCGCGCTG 61.723 55.000 33.29 11.22 43.08 5.18
63 64 1.983160 CTGTATTTTTGCGCGCTGC 59.017 52.632 33.29 15.60 46.70 5.25
64 65 0.454957 CTGTATTTTTGCGCGCTGCT 60.455 50.000 33.29 14.39 46.63 4.24
65 66 0.728803 TGTATTTTTGCGCGCTGCTG 60.729 50.000 33.29 0.80 46.63 4.41
66 67 1.154054 TATTTTTGCGCGCTGCTGG 60.154 52.632 33.29 0.43 46.63 4.85
67 68 1.581727 TATTTTTGCGCGCTGCTGGA 61.582 50.000 33.29 13.45 46.63 3.86
68 69 2.807631 ATTTTTGCGCGCTGCTGGAG 62.808 55.000 33.29 0.00 46.63 3.86
92 93 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
93 94 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
99 100 2.793946 CTGCATTTTAGCGCGGCT 59.206 55.556 8.83 8.38 43.41 5.52
100 101 1.584483 CTGCATTTTAGCGCGGCTG 60.584 57.895 8.83 0.53 40.10 4.85
101 102 2.951227 GCATTTTAGCGCGGCTGC 60.951 61.111 8.83 7.70 40.10 5.25
103 104 1.584483 CATTTTAGCGCGGCTGCTG 60.584 57.895 22.96 10.42 46.70 4.41
104 105 2.764314 ATTTTAGCGCGGCTGCTGG 61.764 57.895 22.96 1.40 46.70 4.85
105 106 3.892740 TTTTAGCGCGGCTGCTGGA 62.893 57.895 22.96 12.50 46.70 3.86
106 107 4.819761 TTAGCGCGGCTGCTGGAG 62.820 66.667 22.96 0.14 46.70 3.86
134 135 4.084888 GCGCGCGCTAACAGGTTT 62.085 61.111 44.38 0.00 38.26 3.27
135 136 2.554272 CGCGCGCTAACAGGTTTT 59.446 55.556 30.48 0.00 0.00 2.43
136 137 1.082366 CGCGCGCTAACAGGTTTTT 60.082 52.632 30.48 0.00 0.00 1.94
164 165 2.931386 GCTATAGCGCGGCTGTTG 59.069 61.111 9.40 6.33 40.10 3.33
165 166 2.598632 GCTATAGCGCGGCTGTTGG 61.599 63.158 9.40 1.78 40.10 3.77
166 167 1.067416 CTATAGCGCGGCTGTTGGA 59.933 57.895 8.83 0.00 40.10 3.53
167 168 0.941463 CTATAGCGCGGCTGTTGGAG 60.941 60.000 8.83 0.00 40.10 3.86
168 169 1.388837 TATAGCGCGGCTGTTGGAGA 61.389 55.000 8.83 0.00 40.10 3.71
169 170 2.032860 ATAGCGCGGCTGTTGGAGAT 62.033 55.000 8.83 0.00 40.10 2.75
173 174 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
209 210 1.367840 GCCTGAAGTGAGACCGTGT 59.632 57.895 0.00 0.00 0.00 4.49
247 248 1.060622 GTAGACGAGTCGAGCCACG 59.939 63.158 21.50 0.00 44.09 4.94
331 332 2.738521 CCGGACTTGCGACAGGTG 60.739 66.667 0.00 0.00 0.00 4.00
406 412 2.821437 TCCTTCCGAGAGTTTCCTCAT 58.179 47.619 0.00 0.00 40.40 2.90
416 422 4.838152 TTCCTCATCGCCAGCGCC 62.838 66.667 2.29 0.00 39.59 6.53
563 579 3.267031 TCATTTCCTTCCCTCCTTCCTTC 59.733 47.826 0.00 0.00 0.00 3.46
564 580 1.670059 TTCCTTCCCTCCTTCCTTCC 58.330 55.000 0.00 0.00 0.00 3.46
591 611 4.798344 CCTGAGCCAGCCAGCCAG 62.798 72.222 3.44 6.92 33.45 4.85
846 886 0.384669 GATAACCAGGACGGACGGAG 59.615 60.000 0.00 0.00 38.63 4.63
850 890 3.141488 CAGGACGGACGGAGGGAG 61.141 72.222 0.00 0.00 0.00 4.30
970 1019 3.876589 GAGCTGGTGGCCGTTTCGA 62.877 63.158 0.00 0.00 43.05 3.71
1023 1078 1.186267 AGAAGAAAGACGCGGGAGGT 61.186 55.000 12.47 0.00 0.00 3.85
1207 1265 3.646715 CCCTTCCCCTCGCCACAA 61.647 66.667 0.00 0.00 0.00 3.33
1208 1266 2.359975 CCTTCCCCTCGCCACAAC 60.360 66.667 0.00 0.00 0.00 3.32
1209 1267 2.359975 CTTCCCCTCGCCACAACC 60.360 66.667 0.00 0.00 0.00 3.77
1210 1268 2.852075 TTCCCCTCGCCACAACCT 60.852 61.111 0.00 0.00 0.00 3.50
1211 1269 2.804828 CTTCCCCTCGCCACAACCTC 62.805 65.000 0.00 0.00 0.00 3.85
1212 1270 4.410400 CCCCTCGCCACAACCTCC 62.410 72.222 0.00 0.00 0.00 4.30
1213 1271 4.760047 CCCTCGCCACAACCTCCG 62.760 72.222 0.00 0.00 0.00 4.63
1215 1273 4.379243 CTCGCCACAACCTCCGCT 62.379 66.667 0.00 0.00 0.00 5.52
1216 1274 4.680237 TCGCCACAACCTCCGCTG 62.680 66.667 0.00 0.00 0.00 5.18
1248 1306 3.181487 GCAACATCAACAACACTGAGGTT 60.181 43.478 0.00 0.00 45.77 3.50
1273 1331 2.927580 GCCAACTCGACGTCCTCCA 61.928 63.158 10.58 0.00 0.00 3.86
1288 1346 1.003839 TCCAACGCAGCTACCAAGG 60.004 57.895 0.00 0.00 0.00 3.61
1514 1632 3.053828 GGAGGACCCGAACACGAA 58.946 61.111 0.00 0.00 0.00 3.85
1515 1633 1.373873 GGAGGACCCGAACACGAAC 60.374 63.158 0.00 0.00 0.00 3.95
1516 1634 1.364901 GAGGACCCGAACACGAACA 59.635 57.895 0.00 0.00 0.00 3.18
1517 1635 0.249573 GAGGACCCGAACACGAACAA 60.250 55.000 0.00 0.00 0.00 2.83
1518 1636 0.249741 AGGACCCGAACACGAACAAG 60.250 55.000 0.00 0.00 0.00 3.16
1519 1637 1.568025 GACCCGAACACGAACAAGC 59.432 57.895 0.00 0.00 0.00 4.01
1520 1638 1.838568 GACCCGAACACGAACAAGCC 61.839 60.000 0.00 0.00 0.00 4.35
1521 1639 2.549282 CCGAACACGAACAAGCCG 59.451 61.111 0.00 0.00 0.00 5.52
1522 1640 2.549282 CGAACACGAACAAGCCGG 59.451 61.111 0.00 0.00 0.00 6.13
1523 1641 2.241880 CGAACACGAACAAGCCGGT 61.242 57.895 1.90 0.00 0.00 5.28
1524 1642 1.278637 GAACACGAACAAGCCGGTG 59.721 57.895 1.90 0.00 0.00 4.94
1525 1643 2.711185 GAACACGAACAAGCCGGTGC 62.711 60.000 1.90 0.00 37.95 5.01
1542 1660 3.129502 CTCCCTCGACCGCACGTA 61.130 66.667 0.00 0.00 34.70 3.57
1689 1807 3.702048 CGCCTGGAGGACCCGAAA 61.702 66.667 0.00 0.00 37.93 3.46
1694 1812 2.045242 GGAGGACCCGAAAAGGCC 60.045 66.667 0.00 0.00 39.21 5.19
2190 2332 2.125832 GCCTACCACGCGCACTTA 60.126 61.111 5.73 0.00 0.00 2.24
2578 2720 6.984474 TGTTTGTGATTTCTATCCCGTATCTC 59.016 38.462 0.00 0.00 0.00 2.75
2579 2721 5.372547 TGTGATTTCTATCCCGTATCTCG 57.627 43.478 0.00 0.00 39.52 4.04
2580 2722 4.825634 TGTGATTTCTATCCCGTATCTCGT 59.174 41.667 0.00 0.00 37.94 4.18
2581 2723 5.999600 TGTGATTTCTATCCCGTATCTCGTA 59.000 40.000 0.00 0.00 37.94 3.43
2582 2724 6.148976 TGTGATTTCTATCCCGTATCTCGTAG 59.851 42.308 0.00 0.00 37.94 3.51
2584 2726 7.332926 GTGATTTCTATCCCGTATCTCGTAGTA 59.667 40.741 0.00 0.00 37.94 1.82
2585 2727 7.879677 TGATTTCTATCCCGTATCTCGTAGTAA 59.120 37.037 0.00 0.00 37.94 2.24
2586 2728 8.804912 ATTTCTATCCCGTATCTCGTAGTAAT 57.195 34.615 0.00 0.00 37.94 1.89
2587 2729 9.896645 ATTTCTATCCCGTATCTCGTAGTAATA 57.103 33.333 0.00 0.00 37.94 0.98
2588 2730 9.896645 TTTCTATCCCGTATCTCGTAGTAATAT 57.103 33.333 0.00 0.00 37.94 1.28
2589 2731 9.539825 TTCTATCCCGTATCTCGTAGTAATATC 57.460 37.037 0.00 0.00 37.94 1.63
2596 2738 9.363763 CCGTATCTCGTAGTAATATCTTCAGTA 57.636 37.037 0.00 0.00 37.94 2.74
2653 2795 2.016393 GCCGCCTCCCAAATTTAGCC 62.016 60.000 0.00 0.00 0.00 3.93
2671 2831 1.180029 CCTCAGGCTGGTTGGAAATG 58.820 55.000 15.73 0.00 0.00 2.32
2710 2877 4.871871 TTGGTAGCATTCCCAAATAGGA 57.128 40.909 0.00 0.00 41.22 2.94
2711 2878 4.437682 TGGTAGCATTCCCAAATAGGAG 57.562 45.455 0.00 0.00 41.22 3.69
2712 2879 3.785887 TGGTAGCATTCCCAAATAGGAGT 59.214 43.478 0.00 0.00 41.22 3.85
2713 2880 4.972568 TGGTAGCATTCCCAAATAGGAGTA 59.027 41.667 0.00 0.00 41.22 2.59
2748 2915 3.655615 AGAACAGGGGTTGTGTTGTTA 57.344 42.857 0.00 0.00 40.74 2.41
2750 2917 4.542697 AGAACAGGGGTTGTGTTGTTAAT 58.457 39.130 0.00 0.00 40.74 1.40
2754 2921 4.340950 ACAGGGGTTGTGTTGTTAATTCAG 59.659 41.667 0.00 0.00 38.99 3.02
2762 2929 7.009174 GGTTGTGTTGTTAATTCAGACAAACAG 59.991 37.037 0.00 0.00 37.49 3.16
2825 2992 1.885887 GAACAATTGGGCACTGTGCTA 59.114 47.619 29.54 17.55 44.28 3.49
2841 3008 2.987821 GTGCTACTTGAGTTCGACCTTC 59.012 50.000 0.00 0.00 0.00 3.46
2842 3009 2.626266 TGCTACTTGAGTTCGACCTTCA 59.374 45.455 0.00 0.00 0.00 3.02
2846 3013 3.458189 ACTTGAGTTCGACCTTCAACAG 58.542 45.455 0.00 0.00 0.00 3.16
2850 3017 5.013568 TGAGTTCGACCTTCAACAGTTAA 57.986 39.130 0.00 0.00 0.00 2.01
2852 3019 6.053005 TGAGTTCGACCTTCAACAGTTAATT 58.947 36.000 0.00 0.00 0.00 1.40
2853 3020 6.540914 TGAGTTCGACCTTCAACAGTTAATTT 59.459 34.615 0.00 0.00 0.00 1.82
2854 3021 7.066525 TGAGTTCGACCTTCAACAGTTAATTTT 59.933 33.333 0.00 0.00 0.00 1.82
2900 3067 5.576563 TCCTTTGGTCAAATTGAGTCCTA 57.423 39.130 0.00 0.00 0.00 2.94
2903 3070 5.182001 CCTTTGGTCAAATTGAGTCCTACAG 59.818 44.000 0.00 0.00 0.00 2.74
2908 3075 3.012518 CAAATTGAGTCCTACAGGGCAG 58.987 50.000 2.12 0.00 43.78 4.85
2927 3094 1.875963 CATGGCGGTTGACACCTTC 59.124 57.895 0.00 0.00 41.64 3.46
2930 3097 1.371558 GGCGGTTGACACCTTCTCT 59.628 57.895 0.00 0.00 41.64 3.10
2964 3131 5.159209 CAGCTTTCATCACTGAACCAATTC 58.841 41.667 0.00 0.00 41.05 2.17
3023 3190 4.292186 AGCATCATTAGGTGTCACAACT 57.708 40.909 0.00 0.00 34.83 3.16
3036 3203 5.995897 GGTGTCACAACTAAAGGTCATTACT 59.004 40.000 5.12 0.00 0.00 2.24
3038 3205 7.352739 GTGTCACAACTAAAGGTCATTACTTG 58.647 38.462 0.00 0.00 0.00 3.16
3040 3207 7.441157 TGTCACAACTAAAGGTCATTACTTGAG 59.559 37.037 0.00 0.00 34.17 3.02
3069 3242 4.792068 TGGTTCTCCAACATCTTTCACTT 58.208 39.130 0.00 0.00 41.25 3.16
3092 3265 9.750125 ACTTTTGAGCCAAAAATCTTAGTAAAG 57.250 29.630 12.25 0.00 41.77 1.85
3097 3270 7.394359 TGAGCCAAAAATCTTAGTAAAGCATCT 59.606 33.333 0.00 0.00 32.36 2.90
3148 3321 7.168219 ACTTTAATACATTCTGTTCTCCAGCA 58.832 34.615 0.00 0.00 41.25 4.41
3160 3333 1.699083 TCTCCAGCATTCACCACTGAA 59.301 47.619 0.00 0.00 40.77 3.02
3198 3453 8.777865 ACTATATATCATGATTTGGTTCCACG 57.222 34.615 14.65 0.00 0.00 4.94
3206 3463 4.658063 TGATTTGGTTCCACGATAAAGGT 58.342 39.130 0.00 0.00 0.00 3.50
3244 3501 6.580788 TGCCTGAAAACAAAGATGAATTGAA 58.419 32.000 0.00 0.00 0.00 2.69
3254 3540 7.433680 ACAAAGATGAATTGAACCCAGTAAAC 58.566 34.615 0.00 0.00 0.00 2.01
3278 3564 8.659925 ACAAAATTTGCTTTGTTCATGACATA 57.340 26.923 5.52 0.00 45.10 2.29
3307 3753 5.880054 TTAGCATAGTCTTTGCCTTTGTC 57.120 39.130 11.19 0.00 41.06 3.18
3308 3754 3.754965 AGCATAGTCTTTGCCTTTGTCA 58.245 40.909 11.19 0.00 41.06 3.58
3314 3760 5.796424 AGTCTTTGCCTTTGTCATTGATT 57.204 34.783 0.00 0.00 0.00 2.57
3339 3787 5.490139 ACATTTCAGACTAATCGGCATTG 57.510 39.130 0.00 0.00 0.00 2.82
3340 3788 4.943705 ACATTTCAGACTAATCGGCATTGT 59.056 37.500 0.00 0.00 0.00 2.71
3361 3820 1.922570 ACATAGCAACGACGTGATCC 58.077 50.000 0.00 0.00 0.00 3.36
3365 3824 0.732880 AGCAACGACGTGATCCGAAG 60.733 55.000 0.00 6.20 40.70 3.79
3366 3825 0.731514 GCAACGACGTGATCCGAAGA 60.732 55.000 0.00 0.00 40.70 2.87
3368 3827 1.385743 CAACGACGTGATCCGAAGAAC 59.614 52.381 0.00 0.00 40.70 3.01
3369 3828 0.879765 ACGACGTGATCCGAAGAACT 59.120 50.000 0.00 0.00 40.70 3.01
3377 3836 4.494764 CGTGATCCGAAGAACTAACTAACG 59.505 45.833 0.00 0.00 39.56 3.18
3381 3840 2.340577 CCGAAGAACTAACTAACGTGCG 59.659 50.000 0.00 0.00 0.00 5.34
3521 3980 1.154599 GCACATGTCGCAGAACGTG 60.155 57.895 13.27 2.48 44.19 4.49
3554 4013 2.266055 CACAAGACGGAGGCCCTC 59.734 66.667 0.73 0.73 0.00 4.30
3614 4073 2.759795 GAGCCCTGCCAGGAGTTT 59.240 61.111 13.74 0.00 37.67 2.66
3734 4193 2.676750 CGAGAACCAAACCATCGGATCA 60.677 50.000 0.00 0.00 0.00 2.92
3797 4271 1.939838 GCCTGCTGGTACATATACGCC 60.940 57.143 11.69 0.00 38.20 5.68
3877 4360 6.437793 TGTAAAGTTTTGGTTCTTCTTTGGGA 59.562 34.615 0.00 0.00 32.01 4.37
3923 4418 2.346649 GCTTTTTGCTGCGTTTTCTTCG 60.347 45.455 0.00 0.00 38.95 3.79
3924 4419 2.553079 TTTTGCTGCGTTTTCTTCGT 57.447 40.000 0.00 0.00 0.00 3.85
3925 4420 2.099633 TTTGCTGCGTTTTCTTCGTC 57.900 45.000 0.00 0.00 0.00 4.20
3926 4421 1.295792 TTGCTGCGTTTTCTTCGTCT 58.704 45.000 0.00 0.00 0.00 4.18
3927 4422 1.295792 TGCTGCGTTTTCTTCGTCTT 58.704 45.000 0.00 0.00 0.00 3.01
3928 4423 1.668751 TGCTGCGTTTTCTTCGTCTTT 59.331 42.857 0.00 0.00 0.00 2.52
3929 4424 2.286184 TGCTGCGTTTTCTTCGTCTTTC 60.286 45.455 0.00 0.00 0.00 2.62
3930 4425 2.032808 GCTGCGTTTTCTTCGTCTTTCT 60.033 45.455 0.00 0.00 0.00 2.52
3931 4426 3.788941 CTGCGTTTTCTTCGTCTTTCTC 58.211 45.455 0.00 0.00 0.00 2.87
3932 4427 3.454375 TGCGTTTTCTTCGTCTTTCTCT 58.546 40.909 0.00 0.00 0.00 3.10
3933 4428 3.869246 TGCGTTTTCTTCGTCTTTCTCTT 59.131 39.130 0.00 0.00 0.00 2.85
3934 4429 4.025979 TGCGTTTTCTTCGTCTTTCTCTTC 60.026 41.667 0.00 0.00 0.00 2.87
3966 4461 0.186386 TTGTCCCCCACATCCGTTTT 59.814 50.000 0.00 0.00 33.90 2.43
3967 4462 1.065647 TGTCCCCCACATCCGTTTTA 58.934 50.000 0.00 0.00 0.00 1.52
3968 4463 1.636519 TGTCCCCCACATCCGTTTTAT 59.363 47.619 0.00 0.00 0.00 1.40
3969 4464 2.844966 TGTCCCCCACATCCGTTTTATA 59.155 45.455 0.00 0.00 0.00 0.98
3970 4465 3.118186 TGTCCCCCACATCCGTTTTATAG 60.118 47.826 0.00 0.00 0.00 1.31
3971 4466 3.135167 GTCCCCCACATCCGTTTTATAGA 59.865 47.826 0.00 0.00 0.00 1.98
3972 4467 3.977999 TCCCCCACATCCGTTTTATAGAT 59.022 43.478 0.00 0.00 0.00 1.98
3973 4468 4.041198 TCCCCCACATCCGTTTTATAGATC 59.959 45.833 0.00 0.00 0.00 2.75
3982 4480 8.353684 ACATCCGTTTTATAGATCTGTGTAGAG 58.646 37.037 5.18 0.00 36.14 2.43
4038 4539 1.079490 TCATCTCCTTCTGGGGTCACT 59.921 52.381 0.00 0.00 34.72 3.41
4040 4541 1.645710 TCTCCTTCTGGGGTCACTTC 58.354 55.000 0.00 0.00 34.72 3.01
4041 4542 1.132849 TCTCCTTCTGGGGTCACTTCA 60.133 52.381 0.00 0.00 34.72 3.02
4042 4543 1.002544 CTCCTTCTGGGGTCACTTCAC 59.997 57.143 0.00 0.00 35.33 3.18
4043 4544 0.764890 CCTTCTGGGGTCACTTCACA 59.235 55.000 0.00 0.00 0.00 3.58
4044 4545 1.352352 CCTTCTGGGGTCACTTCACAT 59.648 52.381 0.00 0.00 0.00 3.21
4045 4546 2.571653 CCTTCTGGGGTCACTTCACATA 59.428 50.000 0.00 0.00 0.00 2.29
4046 4547 3.600388 CTTCTGGGGTCACTTCACATAC 58.400 50.000 0.00 0.00 0.00 2.39
4047 4548 2.902608 TCTGGGGTCACTTCACATACT 58.097 47.619 0.00 0.00 0.00 2.12
4087 4588 1.005032 GGCGTTTCTGCTTTTTGTTGC 60.005 47.619 0.00 0.00 34.52 4.17
4127 4951 2.380410 GGCCGTGTAACTGTCAGCG 61.380 63.158 0.00 0.00 31.75 5.18
4130 4954 1.060713 CCGTGTAACTGTCAGCGAAG 58.939 55.000 0.00 0.00 31.75 3.79
4159 4983 1.227853 GGATGGATCGAAACCGGGG 60.228 63.158 6.32 0.00 0.00 5.73
4167 4996 2.577593 GAAACCGGGGAGACGAGG 59.422 66.667 6.32 0.00 35.47 4.63
4174 5003 2.657237 GGGAGACGAGGTGTGGTG 59.343 66.667 0.00 0.00 0.00 4.17
4185 5014 1.449726 GGTGTGGTGTTTTCCGGGTC 61.450 60.000 0.00 0.00 0.00 4.46
4195 5024 1.710816 TTTCCGGGTCAGGCAAAAAT 58.289 45.000 0.00 0.00 0.00 1.82
4261 5094 2.443394 GGCGATCAGGGGTGATGGA 61.443 63.158 1.99 0.00 0.00 3.41
4262 5095 1.227674 GCGATCAGGGGTGATGGAC 60.228 63.158 1.99 0.00 0.00 4.02
4263 5096 1.068083 CGATCAGGGGTGATGGACG 59.932 63.158 0.00 0.00 0.00 4.79
4264 5097 1.447643 GATCAGGGGTGATGGACGG 59.552 63.158 0.00 0.00 0.00 4.79
4277 5110 2.997897 GACGGGCCTGAGACTGGT 60.998 66.667 21.41 0.00 0.00 4.00
4374 5207 1.330829 CGCGCGCTGGATAGATAGATA 59.669 52.381 30.48 0.00 0.00 1.98
4375 5208 2.601029 CGCGCGCTGGATAGATAGATAG 60.601 54.545 30.48 3.00 0.00 2.08
4376 5209 2.614520 GCGCGCTGGATAGATAGATAGA 59.385 50.000 26.67 0.00 0.00 1.98
4377 5210 3.252215 GCGCGCTGGATAGATAGATAGAT 59.748 47.826 26.67 0.00 0.00 1.98
4500 5344 0.902984 GGGGGTTTTGGATTTCCGCT 60.903 55.000 0.00 0.00 39.43 5.52
4519 5363 2.193248 CCTTCCAAGATCGGGGCC 59.807 66.667 0.00 0.00 0.00 5.80
4521 5365 3.416880 TTCCAAGATCGGGGCCCC 61.417 66.667 33.22 33.22 0.00 5.80
4552 5396 2.989422 GGAACGCAAATGTAAGCTGT 57.011 45.000 0.00 0.00 0.00 4.40
4553 5397 3.282831 GGAACGCAAATGTAAGCTGTT 57.717 42.857 0.00 0.00 32.96 3.16
4554 5398 3.638484 GGAACGCAAATGTAAGCTGTTT 58.362 40.909 0.00 0.00 31.40 2.83
4555 5399 3.425193 GGAACGCAAATGTAAGCTGTTTG 59.575 43.478 0.00 0.00 36.26 2.93
4556 5400 3.011949 ACGCAAATGTAAGCTGTTTGG 57.988 42.857 12.91 7.87 34.34 3.28
4557 5401 1.720852 CGCAAATGTAAGCTGTTTGGC 59.279 47.619 12.91 3.13 34.34 4.52
4558 5402 2.068519 GCAAATGTAAGCTGTTTGGCC 58.931 47.619 0.00 0.00 34.34 5.36
4559 5403 2.289010 GCAAATGTAAGCTGTTTGGCCT 60.289 45.455 3.32 0.00 34.34 5.19
4560 5404 3.803368 GCAAATGTAAGCTGTTTGGCCTT 60.803 43.478 3.32 0.00 34.34 4.35
4561 5405 3.942130 AATGTAAGCTGTTTGGCCTTC 57.058 42.857 3.32 0.00 0.00 3.46
4562 5406 1.234821 TGTAAGCTGTTTGGCCTTCG 58.765 50.000 3.32 0.00 0.00 3.79
4563 5407 0.521735 GTAAGCTGTTTGGCCTTCGG 59.478 55.000 3.32 0.25 0.00 4.30
4564 5408 0.398696 TAAGCTGTTTGGCCTTCGGA 59.601 50.000 3.32 0.00 0.00 4.55
4565 5409 1.172812 AAGCTGTTTGGCCTTCGGAC 61.173 55.000 3.32 0.00 0.00 4.79
4566 5410 2.626780 GCTGTTTGGCCTTCGGACC 61.627 63.158 3.32 0.00 0.00 4.46
4567 5411 1.073199 CTGTTTGGCCTTCGGACCT 59.927 57.895 3.32 0.00 0.00 3.85
4568 5412 1.228124 TGTTTGGCCTTCGGACCTG 60.228 57.895 3.32 0.00 0.00 4.00
4569 5413 1.971695 GTTTGGCCTTCGGACCTGG 60.972 63.158 3.32 0.00 0.00 4.45
4570 5414 3.204467 TTTGGCCTTCGGACCTGGG 62.204 63.158 3.32 0.00 0.00 4.45
4571 5415 4.649705 TGGCCTTCGGACCTGGGA 62.650 66.667 3.32 0.00 0.00 4.37
4572 5416 3.090532 GGCCTTCGGACCTGGGAT 61.091 66.667 0.00 0.00 0.00 3.85
4573 5417 2.680370 GGCCTTCGGACCTGGGATT 61.680 63.158 0.00 0.00 0.00 3.01
4574 5418 1.303282 GCCTTCGGACCTGGGATTT 59.697 57.895 0.00 0.00 0.00 2.17
4575 5419 1.032114 GCCTTCGGACCTGGGATTTG 61.032 60.000 0.00 0.00 0.00 2.32
4576 5420 1.032114 CCTTCGGACCTGGGATTTGC 61.032 60.000 0.00 0.00 0.00 3.68
4577 5421 0.035056 CTTCGGACCTGGGATTTGCT 60.035 55.000 0.00 0.00 0.00 3.91
4578 5422 1.209504 CTTCGGACCTGGGATTTGCTA 59.790 52.381 0.00 0.00 0.00 3.49
4579 5423 1.507140 TCGGACCTGGGATTTGCTAT 58.493 50.000 0.00 0.00 0.00 2.97
4580 5424 1.843851 TCGGACCTGGGATTTGCTATT 59.156 47.619 0.00 0.00 0.00 1.73
4581 5425 1.949525 CGGACCTGGGATTTGCTATTG 59.050 52.381 0.00 0.00 0.00 1.90
4582 5426 1.683385 GGACCTGGGATTTGCTATTGC 59.317 52.381 0.00 0.00 40.20 3.56
4583 5427 2.659428 GACCTGGGATTTGCTATTGCT 58.341 47.619 0.00 0.00 40.48 3.91
4584 5428 2.360165 GACCTGGGATTTGCTATTGCTG 59.640 50.000 0.00 0.00 40.48 4.41
4585 5429 1.684983 CCTGGGATTTGCTATTGCTGG 59.315 52.381 0.00 0.00 40.48 4.85
4586 5430 1.068127 CTGGGATTTGCTATTGCTGGC 59.932 52.381 0.00 0.00 40.48 4.85
4587 5431 0.390492 GGGATTTGCTATTGCTGGCC 59.610 55.000 0.00 0.00 40.48 5.36
4588 5432 1.406903 GGATTTGCTATTGCTGGCCT 58.593 50.000 3.32 0.00 40.48 5.19
4589 5433 1.068127 GGATTTGCTATTGCTGGCCTG 59.932 52.381 3.32 4.26 40.48 4.85
4590 5434 1.068127 GATTTGCTATTGCTGGCCTGG 59.932 52.381 12.06 1.66 40.48 4.45
4591 5435 0.251742 TTTGCTATTGCTGGCCTGGT 60.252 50.000 12.06 0.00 40.48 4.00
4592 5436 0.251742 TTGCTATTGCTGGCCTGGTT 60.252 50.000 12.06 0.00 40.48 3.67
4593 5437 0.251742 TGCTATTGCTGGCCTGGTTT 60.252 50.000 12.06 0.00 40.48 3.27
4594 5438 0.897621 GCTATTGCTGGCCTGGTTTT 59.102 50.000 12.06 0.00 36.03 2.43
4595 5439 2.099405 GCTATTGCTGGCCTGGTTTTA 58.901 47.619 12.06 0.00 36.03 1.52
4596 5440 2.495669 GCTATTGCTGGCCTGGTTTTAA 59.504 45.455 12.06 0.00 36.03 1.52
4597 5441 3.676049 GCTATTGCTGGCCTGGTTTTAAC 60.676 47.826 12.06 0.00 36.03 2.01
4598 5442 1.781786 TTGCTGGCCTGGTTTTAACA 58.218 45.000 12.06 0.00 0.00 2.41
4599 5443 1.036707 TGCTGGCCTGGTTTTAACAC 58.963 50.000 12.06 0.00 0.00 3.32
4600 5444 0.317160 GCTGGCCTGGTTTTAACACC 59.683 55.000 12.06 3.69 37.34 4.16
4601 5445 0.596082 CTGGCCTGGTTTTAACACCG 59.404 55.000 3.32 1.76 40.09 4.94
4602 5446 0.106619 TGGCCTGGTTTTAACACCGT 60.107 50.000 3.32 0.00 40.09 4.83
4603 5447 0.594602 GGCCTGGTTTTAACACCGTC 59.405 55.000 6.32 0.00 40.09 4.79
4604 5448 0.594602 GCCTGGTTTTAACACCGTCC 59.405 55.000 6.32 0.00 40.09 4.79
4605 5449 1.970092 CCTGGTTTTAACACCGTCCA 58.030 50.000 6.32 0.00 40.09 4.02
4606 5450 2.510613 CCTGGTTTTAACACCGTCCAT 58.489 47.619 6.32 0.00 40.09 3.41
4607 5451 2.486592 CCTGGTTTTAACACCGTCCATC 59.513 50.000 6.32 0.00 40.09 3.51
4608 5452 3.408634 CTGGTTTTAACACCGTCCATCT 58.591 45.455 6.32 0.00 40.09 2.90
4609 5453 3.818773 CTGGTTTTAACACCGTCCATCTT 59.181 43.478 6.32 0.00 40.09 2.40
4610 5454 4.208746 TGGTTTTAACACCGTCCATCTTT 58.791 39.130 6.32 0.00 40.09 2.52
4611 5455 4.645588 TGGTTTTAACACCGTCCATCTTTT 59.354 37.500 6.32 0.00 40.09 2.27
4612 5456 5.217393 GGTTTTAACACCGTCCATCTTTTC 58.783 41.667 0.00 0.00 0.00 2.29
4613 5457 5.217393 GTTTTAACACCGTCCATCTTTTCC 58.783 41.667 0.00 0.00 0.00 3.13
4614 5458 1.519408 AACACCGTCCATCTTTTCCG 58.481 50.000 0.00 0.00 0.00 4.30
4615 5459 0.321298 ACACCGTCCATCTTTTCCGG 60.321 55.000 0.00 0.00 44.06 5.14
4616 5460 1.376812 ACCGTCCATCTTTTCCGGC 60.377 57.895 0.00 0.00 42.29 6.13
4617 5461 1.078426 CCGTCCATCTTTTCCGGCT 60.078 57.895 0.00 0.00 0.00 5.52
4618 5462 1.090052 CCGTCCATCTTTTCCGGCTC 61.090 60.000 0.00 0.00 0.00 4.70
4619 5463 1.090052 CGTCCATCTTTTCCGGCTCC 61.090 60.000 0.00 0.00 0.00 4.70
4620 5464 1.090052 GTCCATCTTTTCCGGCTCCG 61.090 60.000 0.00 0.48 39.44 4.63
4640 5484 2.793288 GGGTACCGGAAAATGGAGAA 57.207 50.000 9.46 0.00 40.86 2.87
4641 5485 3.076079 GGGTACCGGAAAATGGAGAAA 57.924 47.619 9.46 0.00 40.86 2.52
4642 5486 3.628008 GGGTACCGGAAAATGGAGAAAT 58.372 45.455 9.46 0.00 40.86 2.17
4643 5487 4.021229 GGGTACCGGAAAATGGAGAAATT 58.979 43.478 9.46 0.00 40.86 1.82
4644 5488 4.464951 GGGTACCGGAAAATGGAGAAATTT 59.535 41.667 9.46 0.00 40.86 1.82
4645 5489 5.407502 GGTACCGGAAAATGGAGAAATTTG 58.592 41.667 9.46 0.00 30.21 2.32
4646 5490 5.184287 GGTACCGGAAAATGGAGAAATTTGA 59.816 40.000 9.46 0.00 30.21 2.69
4647 5491 6.127451 GGTACCGGAAAATGGAGAAATTTGAT 60.127 38.462 9.46 0.00 30.21 2.57
4648 5492 5.965922 ACCGGAAAATGGAGAAATTTGATC 58.034 37.500 9.46 0.00 30.21 2.92
4649 5493 5.716703 ACCGGAAAATGGAGAAATTTGATCT 59.283 36.000 9.46 0.00 30.21 2.75
4650 5494 6.211384 ACCGGAAAATGGAGAAATTTGATCTT 59.789 34.615 9.46 0.00 30.21 2.40
4651 5495 7.396055 ACCGGAAAATGGAGAAATTTGATCTTA 59.604 33.333 9.46 0.00 30.21 2.10
4652 5496 8.250332 CCGGAAAATGGAGAAATTTGATCTTAA 58.750 33.333 0.00 0.00 30.21 1.85
4653 5497 9.076596 CGGAAAATGGAGAAATTTGATCTTAAC 57.923 33.333 0.00 0.00 30.21 2.01
4654 5498 9.371136 GGAAAATGGAGAAATTTGATCTTAACC 57.629 33.333 0.00 0.00 30.21 2.85
4655 5499 9.371136 GAAAATGGAGAAATTTGATCTTAACCC 57.629 33.333 0.00 0.00 30.21 4.11
4656 5500 8.434589 AAATGGAGAAATTTGATCTTAACCCA 57.565 30.769 0.00 0.00 0.00 4.51
4657 5501 6.834168 TGGAGAAATTTGATCTTAACCCAC 57.166 37.500 0.00 0.00 0.00 4.61
4658 5502 6.310941 TGGAGAAATTTGATCTTAACCCACA 58.689 36.000 0.00 0.00 0.00 4.17
4659 5503 6.208599 TGGAGAAATTTGATCTTAACCCACAC 59.791 38.462 0.00 0.00 0.00 3.82
4660 5504 6.434340 GGAGAAATTTGATCTTAACCCACACT 59.566 38.462 0.00 0.00 0.00 3.55
4661 5505 7.039714 GGAGAAATTTGATCTTAACCCACACTT 60.040 37.037 0.00 0.00 0.00 3.16
4662 5506 8.250143 AGAAATTTGATCTTAACCCACACTTT 57.750 30.769 0.00 0.00 0.00 2.66
4663 5507 9.362151 AGAAATTTGATCTTAACCCACACTTTA 57.638 29.630 0.00 0.00 0.00 1.85
4664 5508 9.406828 GAAATTTGATCTTAACCCACACTTTAC 57.593 33.333 0.00 0.00 0.00 2.01
4665 5509 8.706322 AATTTGATCTTAACCCACACTTTACT 57.294 30.769 0.00 0.00 0.00 2.24
4666 5510 9.802039 AATTTGATCTTAACCCACACTTTACTA 57.198 29.630 0.00 0.00 0.00 1.82
4667 5511 8.611654 TTTGATCTTAACCCACACTTTACTAC 57.388 34.615 0.00 0.00 0.00 2.73
4668 5512 7.549147 TGATCTTAACCCACACTTTACTACT 57.451 36.000 0.00 0.00 0.00 2.57
4669 5513 7.609056 TGATCTTAACCCACACTTTACTACTC 58.391 38.462 0.00 0.00 0.00 2.59
4670 5514 6.350629 TCTTAACCCACACTTTACTACTCC 57.649 41.667 0.00 0.00 0.00 3.85
4671 5515 5.246883 TCTTAACCCACACTTTACTACTCCC 59.753 44.000 0.00 0.00 0.00 4.30
4672 5516 3.271153 ACCCACACTTTACTACTCCCT 57.729 47.619 0.00 0.00 0.00 4.20
4673 5517 3.171528 ACCCACACTTTACTACTCCCTC 58.828 50.000 0.00 0.00 0.00 4.30
4674 5518 2.500504 CCCACACTTTACTACTCCCTCC 59.499 54.545 0.00 0.00 0.00 4.30
4675 5519 2.165845 CCACACTTTACTACTCCCTCCG 59.834 54.545 0.00 0.00 0.00 4.63
4676 5520 2.824341 CACACTTTACTACTCCCTCCGT 59.176 50.000 0.00 0.00 0.00 4.69
4677 5521 3.087781 ACACTTTACTACTCCCTCCGTC 58.912 50.000 0.00 0.00 0.00 4.79
4678 5522 3.245193 ACACTTTACTACTCCCTCCGTCT 60.245 47.826 0.00 0.00 0.00 4.18
4679 5523 3.377798 CACTTTACTACTCCCTCCGTCTC 59.622 52.174 0.00 0.00 0.00 3.36
4680 5524 3.009916 ACTTTACTACTCCCTCCGTCTCA 59.990 47.826 0.00 0.00 0.00 3.27
4681 5525 3.947612 TTACTACTCCCTCCGTCTCAT 57.052 47.619 0.00 0.00 0.00 2.90
4682 5526 5.104193 ACTTTACTACTCCCTCCGTCTCATA 60.104 44.000 0.00 0.00 0.00 2.15
4683 5527 3.947612 ACTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
4684 5528 4.456662 ACTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
4685 5529 5.579753 ACTACTCCCTCCGTCTCATAATA 57.420 43.478 0.00 0.00 0.00 0.98
4686 5530 6.142259 ACTACTCCCTCCGTCTCATAATAT 57.858 41.667 0.00 0.00 0.00 1.28
4687 5531 7.268212 ACTACTCCCTCCGTCTCATAATATA 57.732 40.000 0.00 0.00 0.00 0.86
4688 5532 7.696981 ACTACTCCCTCCGTCTCATAATATAA 58.303 38.462 0.00 0.00 0.00 0.98
4689 5533 7.830201 ACTACTCCCTCCGTCTCATAATATAAG 59.170 40.741 0.00 0.00 0.00 1.73
4690 5534 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
4691 5535 6.660094 ACTCCCTCCGTCTCATAATATAAGAC 59.340 42.308 0.00 0.00 36.82 3.01
4700 5544 8.138365 GTCTCATAATATAAGACGTTTTGGCA 57.862 34.615 0.83 0.00 31.01 4.92
4701 5545 8.062448 GTCTCATAATATAAGACGTTTTGGCAC 58.938 37.037 0.83 0.00 31.01 5.01
4702 5546 7.985184 TCTCATAATATAAGACGTTTTGGCACT 59.015 33.333 0.83 0.00 0.00 4.40
4703 5547 9.256477 CTCATAATATAAGACGTTTTGGCACTA 57.744 33.333 0.83 0.00 0.00 2.74
4704 5548 9.256477 TCATAATATAAGACGTTTTGGCACTAG 57.744 33.333 0.83 0.00 0.00 2.57
4705 5549 9.042008 CATAATATAAGACGTTTTGGCACTAGT 57.958 33.333 0.83 0.00 0.00 2.57
4706 5550 6.903883 ATATAAGACGTTTTGGCACTAGTG 57.096 37.500 18.93 18.93 0.00 2.74
4707 5551 2.614829 AGACGTTTTGGCACTAGTGT 57.385 45.000 23.44 1.22 0.00 3.55
4708 5552 3.738830 AGACGTTTTGGCACTAGTGTA 57.261 42.857 23.44 10.89 0.00 2.90
4709 5553 3.650139 AGACGTTTTGGCACTAGTGTAG 58.350 45.455 23.44 9.91 0.00 2.74
4710 5554 3.069158 AGACGTTTTGGCACTAGTGTAGT 59.931 43.478 23.44 12.63 40.28 2.73
4745 5589 9.784531 ACATTTTATATTATGTGACAGAGGGAG 57.215 33.333 0.00 0.00 33.90 4.30
4746 5590 9.784531 CATTTTATATTATGTGACAGAGGGAGT 57.215 33.333 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.056304 ACAGCGCGCATTAAACATTTTT 58.944 36.364 35.10 3.94 0.00 1.94
28 29 2.671596 ACAGCGCGCATTAAACATTTT 58.328 38.095 35.10 4.19 0.00 1.82
29 30 2.346099 ACAGCGCGCATTAAACATTT 57.654 40.000 35.10 4.83 0.00 2.32
30 31 3.691049 ATACAGCGCGCATTAAACATT 57.309 38.095 35.10 5.73 0.00 2.71
31 32 3.691049 AATACAGCGCGCATTAAACAT 57.309 38.095 35.10 12.81 0.00 2.71
32 33 3.479505 AAATACAGCGCGCATTAAACA 57.520 38.095 35.10 10.92 0.00 2.83
33 34 4.554864 CAAAAATACAGCGCGCATTAAAC 58.445 39.130 35.10 0.72 0.00 2.01
34 35 3.060098 GCAAAAATACAGCGCGCATTAAA 59.940 39.130 35.10 14.01 0.00 1.52
35 36 2.596419 GCAAAAATACAGCGCGCATTAA 59.404 40.909 35.10 15.99 0.00 1.40
36 37 2.181205 GCAAAAATACAGCGCGCATTA 58.819 42.857 35.10 23.26 0.00 1.90
37 38 0.991344 GCAAAAATACAGCGCGCATT 59.009 45.000 35.10 21.34 0.00 3.56
38 39 1.133363 CGCAAAAATACAGCGCGCAT 61.133 50.000 35.10 23.29 45.14 4.73
39 40 1.795569 CGCAAAAATACAGCGCGCA 60.796 52.632 35.10 13.97 45.14 6.09
40 41 2.979036 CGCAAAAATACAGCGCGC 59.021 55.556 26.66 26.66 45.14 6.86
44 45 1.983160 CAGCGCGCAAAAATACAGC 59.017 52.632 35.10 0.00 0.00 4.40
45 46 0.454957 AGCAGCGCGCAAAAATACAG 60.455 50.000 35.10 11.53 46.13 2.74
46 47 0.728803 CAGCAGCGCGCAAAAATACA 60.729 50.000 35.10 0.00 46.13 2.29
47 48 1.405469 CCAGCAGCGCGCAAAAATAC 61.405 55.000 35.10 13.50 46.13 1.89
48 49 1.154054 CCAGCAGCGCGCAAAAATA 60.154 52.632 35.10 0.00 46.13 1.40
49 50 2.431260 CCAGCAGCGCGCAAAAAT 60.431 55.556 35.10 9.38 46.13 1.82
50 51 3.541093 CTCCAGCAGCGCGCAAAAA 62.541 57.895 35.10 12.17 46.13 1.94
51 52 4.029186 CTCCAGCAGCGCGCAAAA 62.029 61.111 35.10 11.03 46.13 2.44
75 76 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
76 77 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
81 82 2.951227 GCCGCGCTAAAATGCAGC 60.951 61.111 5.56 0.00 35.61 5.25
82 83 1.584483 CAGCCGCGCTAAAATGCAG 60.584 57.895 5.56 0.00 36.40 4.41
83 84 2.484662 CAGCCGCGCTAAAATGCA 59.515 55.556 5.56 0.00 36.40 3.96
84 85 2.951227 GCAGCCGCGCTAAAATGC 60.951 61.111 5.56 4.97 36.40 3.56
85 86 1.584483 CAGCAGCCGCGCTAAAATG 60.584 57.895 5.56 0.00 45.49 2.32
86 87 2.764314 CCAGCAGCCGCGCTAAAAT 61.764 57.895 5.56 0.00 45.49 1.82
87 88 3.430862 CCAGCAGCCGCGCTAAAA 61.431 61.111 5.56 0.00 45.49 1.52
88 89 4.386951 TCCAGCAGCCGCGCTAAA 62.387 61.111 5.56 0.00 45.49 1.85
89 90 4.819761 CTCCAGCAGCCGCGCTAA 62.820 66.667 5.56 1.87 45.49 3.09
117 118 3.588891 AAAACCTGTTAGCGCGCGC 62.589 57.895 45.10 45.10 42.33 6.86
118 119 1.082366 AAAAACCTGTTAGCGCGCG 60.082 52.632 28.44 28.44 0.00 6.86
119 120 4.935630 AAAAACCTGTTAGCGCGC 57.064 50.000 26.66 26.66 0.00 6.86
147 148 2.598632 CCAACAGCCGCGCTATAGC 61.599 63.158 15.09 15.09 36.40 2.97
148 149 0.941463 CTCCAACAGCCGCGCTATAG 60.941 60.000 5.56 0.00 36.40 1.31
149 150 1.067416 CTCCAACAGCCGCGCTATA 59.933 57.895 5.56 0.00 36.40 1.31
150 151 2.032860 ATCTCCAACAGCCGCGCTAT 62.033 55.000 5.56 0.00 36.40 2.97
151 152 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
152 153 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
153 154 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
154 155 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
155 156 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
156 157 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
167 168 1.790387 GCACGTGGTTGAGAGCATC 59.210 57.895 18.88 0.00 35.44 3.91
168 169 2.029288 CGCACGTGGTTGAGAGCAT 61.029 57.895 18.88 0.00 35.44 3.79
169 170 2.077821 TACGCACGTGGTTGAGAGCA 62.078 55.000 18.88 0.00 0.00 4.26
173 174 3.545911 GGTACGCACGTGGTTGAG 58.454 61.111 18.88 0.00 0.00 3.02
194 195 0.601558 GCCTACACGGTCTCACTTCA 59.398 55.000 0.00 0.00 34.25 3.02
209 210 0.174162 GGTAGAAAAGCCGTCGCCTA 59.826 55.000 0.00 0.00 34.57 3.93
230 231 2.747822 GCGTGGCTCGACTCGTCTA 61.748 63.158 13.77 0.00 42.86 2.59
247 248 0.108472 GGTTGTAGTACAGGGACGGC 60.108 60.000 2.68 0.00 0.00 5.68
253 254 3.755378 ACGAGTAGTGGTTGTAGTACAGG 59.245 47.826 2.68 0.00 0.00 4.00
714 746 3.003763 GAGGGGAAGGTGGCGTCT 61.004 66.667 0.00 0.00 0.00 4.18
715 747 4.097361 GGAGGGGAAGGTGGCGTC 62.097 72.222 0.00 0.00 0.00 5.19
970 1019 2.730090 CGGTTACGTACGACTCTGCAAT 60.730 50.000 24.41 0.00 34.81 3.56
998 1053 2.337583 CCGCGTCTTTCTTCTTCATGA 58.662 47.619 4.92 0.00 0.00 3.07
1119 1177 3.368571 GGCTGGAGCTGCCACAAC 61.369 66.667 8.63 0.00 45.75 3.32
1194 1252 3.319198 GAGGTTGTGGCGAGGGGA 61.319 66.667 0.00 0.00 0.00 4.81
1218 1276 3.736100 TTGATGTTGCTGGCGGCG 61.736 61.111 14.59 0.51 45.43 6.46
1219 1277 2.126346 GTTGATGTTGCTGGCGGC 60.126 61.111 12.43 12.43 42.22 6.53
1220 1278 0.664166 GTTGTTGATGTTGCTGGCGG 60.664 55.000 0.00 0.00 0.00 6.13
1221 1279 0.030504 TGTTGTTGATGTTGCTGGCG 59.969 50.000 0.00 0.00 0.00 5.69
1222 1280 1.067516 AGTGTTGTTGATGTTGCTGGC 59.932 47.619 0.00 0.00 0.00 4.85
1223 1281 2.358582 TCAGTGTTGTTGATGTTGCTGG 59.641 45.455 0.00 0.00 0.00 4.85
1224 1282 3.549423 CCTCAGTGTTGTTGATGTTGCTG 60.549 47.826 0.00 0.00 0.00 4.41
1225 1283 2.620115 CCTCAGTGTTGTTGATGTTGCT 59.380 45.455 0.00 0.00 0.00 3.91
1226 1284 2.358898 ACCTCAGTGTTGTTGATGTTGC 59.641 45.455 0.00 0.00 0.00 4.17
1227 1285 4.096231 TGAACCTCAGTGTTGTTGATGTTG 59.904 41.667 5.05 0.00 34.81 3.33
1228 1286 4.096382 GTGAACCTCAGTGTTGTTGATGTT 59.904 41.667 5.05 0.00 36.53 2.71
1229 1287 3.627577 GTGAACCTCAGTGTTGTTGATGT 59.372 43.478 5.05 0.00 0.00 3.06
1230 1288 3.879295 AGTGAACCTCAGTGTTGTTGATG 59.121 43.478 5.05 0.00 0.00 3.07
1231 1289 4.130118 GAGTGAACCTCAGTGTTGTTGAT 58.870 43.478 5.05 0.00 40.17 2.57
1232 1290 3.531538 GAGTGAACCTCAGTGTTGTTGA 58.468 45.455 5.05 0.00 40.17 3.18
1248 1306 2.649034 GTCGAGTTGGCGGAGTGA 59.351 61.111 0.00 0.00 0.00 3.41
1273 1331 2.359975 GCCCTTGGTAGCTGCGTT 60.360 61.111 0.00 0.00 0.00 4.84
1440 1558 3.423154 GGCTTGTTCGTGCTCGGG 61.423 66.667 8.49 0.00 37.69 5.14
1445 1563 4.683334 GCACCGGCTTGTTCGTGC 62.683 66.667 0.00 0.00 36.96 5.34
1497 1615 1.373873 GTTCGTGTTCGGGTCCTCC 60.374 63.158 0.00 0.00 37.69 4.30
1498 1616 0.249573 TTGTTCGTGTTCGGGTCCTC 60.250 55.000 0.00 0.00 37.69 3.71
1499 1617 0.249741 CTTGTTCGTGTTCGGGTCCT 60.250 55.000 0.00 0.00 37.69 3.85
1500 1618 1.838568 GCTTGTTCGTGTTCGGGTCC 61.839 60.000 0.00 0.00 37.69 4.46
1501 1619 1.568025 GCTTGTTCGTGTTCGGGTC 59.432 57.895 0.00 0.00 37.69 4.46
1502 1620 1.890510 GGCTTGTTCGTGTTCGGGT 60.891 57.895 0.00 0.00 37.69 5.28
1503 1621 2.943653 GGCTTGTTCGTGTTCGGG 59.056 61.111 0.00 0.00 37.69 5.14
1504 1622 2.549282 CGGCTTGTTCGTGTTCGG 59.451 61.111 0.00 0.00 37.69 4.30
1505 1623 2.241880 ACCGGCTTGTTCGTGTTCG 61.242 57.895 0.00 0.00 38.55 3.95
1506 1624 1.278637 CACCGGCTTGTTCGTGTTC 59.721 57.895 0.00 0.00 0.00 3.18
1507 1625 2.830285 GCACCGGCTTGTTCGTGTT 61.830 57.895 0.00 0.00 36.96 3.32
1508 1626 3.276846 GCACCGGCTTGTTCGTGT 61.277 61.111 0.00 0.00 36.96 4.49
1525 1643 2.594119 CTTACGTGCGGTCGAGGGAG 62.594 65.000 0.00 0.00 34.70 4.30
1526 1644 2.672651 TTACGTGCGGTCGAGGGA 60.673 61.111 0.00 0.00 34.70 4.20
1527 1645 2.202570 CTTACGTGCGGTCGAGGG 60.203 66.667 0.00 0.00 34.70 4.30
1528 1646 2.879462 GCTTACGTGCGGTCGAGG 60.879 66.667 0.00 0.00 34.70 4.63
1529 1647 1.868251 GAGCTTACGTGCGGTCGAG 60.868 63.158 0.00 0.00 38.13 4.04
1530 1648 2.177531 GAGCTTACGTGCGGTCGA 59.822 61.111 0.00 0.00 38.13 4.20
1531 1649 3.238241 CGAGCTTACGTGCGGTCG 61.238 66.667 20.32 20.32 43.30 4.79
1532 1650 2.879462 CCGAGCTTACGTGCGGTC 60.879 66.667 0.00 3.04 38.99 4.79
1676 1794 2.754375 GCCTTTTCGGGTCCTCCA 59.246 61.111 0.00 0.00 34.36 3.86
2083 2225 2.125106 GAACGGCGGGCTGAAGAT 60.125 61.111 13.24 0.00 0.00 2.40
2284 2426 1.221840 GGATGTCCTGCACCGTGAT 59.778 57.895 1.65 0.00 0.00 3.06
2596 2738 9.128107 CTCGCAATCACAAATGTAAAAATAGTT 57.872 29.630 0.00 0.00 0.00 2.24
2597 2739 8.511321 TCTCGCAATCACAAATGTAAAAATAGT 58.489 29.630 0.00 0.00 0.00 2.12
2598 2740 8.894409 TCTCGCAATCACAAATGTAAAAATAG 57.106 30.769 0.00 0.00 0.00 1.73
2599 2741 9.502145 GATCTCGCAATCACAAATGTAAAAATA 57.498 29.630 0.00 0.00 0.00 1.40
2600 2742 8.246180 AGATCTCGCAATCACAAATGTAAAAAT 58.754 29.630 0.00 0.00 0.00 1.82
2601 2743 7.592938 AGATCTCGCAATCACAAATGTAAAAA 58.407 30.769 0.00 0.00 0.00 1.94
2605 2747 5.521372 CAGAGATCTCGCAATCACAAATGTA 59.479 40.000 16.97 0.00 34.09 2.29
2606 2748 4.331992 CAGAGATCTCGCAATCACAAATGT 59.668 41.667 16.97 0.00 34.09 2.71
2607 2749 4.331992 ACAGAGATCTCGCAATCACAAATG 59.668 41.667 16.97 7.72 34.09 2.32
2608 2750 4.511527 ACAGAGATCTCGCAATCACAAAT 58.488 39.130 16.97 0.00 34.09 2.32
2609 2751 3.928992 GACAGAGATCTCGCAATCACAAA 59.071 43.478 16.97 0.00 34.09 2.83
2610 2752 3.056607 TGACAGAGATCTCGCAATCACAA 60.057 43.478 16.97 0.00 34.09 3.33
2611 2753 2.493278 TGACAGAGATCTCGCAATCACA 59.507 45.455 16.97 8.85 34.09 3.58
2612 2754 2.857152 GTGACAGAGATCTCGCAATCAC 59.143 50.000 23.56 23.56 34.09 3.06
2653 2795 0.529378 GCATTTCCAACCAGCCTGAG 59.471 55.000 0.00 0.00 0.00 3.35
2664 2824 4.321601 CCGGTAGAACAAATTGCATTTCCA 60.322 41.667 0.00 0.00 0.00 3.53
2666 2826 4.805219 ACCGGTAGAACAAATTGCATTTC 58.195 39.130 4.49 0.00 0.00 2.17
2671 2831 3.313690 CCAAACCGGTAGAACAAATTGC 58.686 45.455 8.00 0.00 0.00 3.56
2711 2878 9.490379 CCCCTGTTCTACTGACAAAATATATAC 57.510 37.037 0.00 0.00 0.00 1.47
2712 2879 9.220906 ACCCCTGTTCTACTGACAAAATATATA 57.779 33.333 0.00 0.00 0.00 0.86
2713 2880 8.102484 ACCCCTGTTCTACTGACAAAATATAT 57.898 34.615 0.00 0.00 0.00 0.86
2722 2889 2.104281 ACACAACCCCTGTTCTACTGAC 59.896 50.000 0.00 0.00 35.47 3.51
2723 2890 2.404559 ACACAACCCCTGTTCTACTGA 58.595 47.619 0.00 0.00 35.47 3.41
2725 2892 2.508300 ACAACACAACCCCTGTTCTACT 59.492 45.455 0.00 0.00 35.47 2.57
2728 2895 2.525105 AACAACACAACCCCTGTTCT 57.475 45.000 0.00 0.00 35.47 3.01
2733 2900 4.583073 GTCTGAATTAACAACACAACCCCT 59.417 41.667 0.00 0.00 0.00 4.79
2734 2901 4.339814 TGTCTGAATTAACAACACAACCCC 59.660 41.667 0.00 0.00 0.00 4.95
2735 2902 5.508200 TGTCTGAATTAACAACACAACCC 57.492 39.130 0.00 0.00 0.00 4.11
2748 2915 7.572523 TTGAGAATGTCTGTTTGTCTGAATT 57.427 32.000 0.00 0.00 0.00 2.17
2750 2917 6.458751 GCTTTGAGAATGTCTGTTTGTCTGAA 60.459 38.462 0.00 0.00 0.00 3.02
2754 2921 5.173774 TGCTTTGAGAATGTCTGTTTGTC 57.826 39.130 0.00 0.00 0.00 3.18
2762 2929 7.171678 ACAAGTAGTAACTGCTTTGAGAATGTC 59.828 37.037 0.00 0.00 34.38 3.06
2793 2960 3.006110 CCCAATTGTTCAACAGACTGCAT 59.994 43.478 1.25 0.00 0.00 3.96
2794 2961 2.361757 CCCAATTGTTCAACAGACTGCA 59.638 45.455 1.25 0.00 0.00 4.41
2825 2992 3.118738 ACTGTTGAAGGTCGAACTCAAGT 60.119 43.478 1.89 2.70 0.00 3.16
2927 3094 5.505173 TGAAAGCTGGAGAACAAAAAGAG 57.495 39.130 0.00 0.00 0.00 2.85
2930 3097 5.360714 AGTGATGAAAGCTGGAGAACAAAAA 59.639 36.000 0.00 0.00 0.00 1.94
2964 3131 5.841810 TGCAGGACTAAATTTGACCAAAAG 58.158 37.500 0.00 0.00 33.56 2.27
3023 3190 7.309133 CCAAATGTGCTCAAGTAATGACCTTTA 60.309 37.037 0.00 0.00 33.47 1.85
3066 3239 9.750125 CTTTACTAAGATTTTTGGCTCAAAAGT 57.250 29.630 11.30 9.53 37.77 2.66
3069 3242 7.721402 TGCTTTACTAAGATTTTTGGCTCAAA 58.279 30.769 0.00 0.00 32.92 2.69
3092 3265 3.779759 TGTTTGTGAAACCAACAGATGC 58.220 40.909 0.00 0.00 46.02 3.91
3172 3345 9.869757 CGTGGAACCAAATCATGATATATAGTA 57.130 33.333 9.04 0.00 0.00 1.82
3173 3346 8.593679 TCGTGGAACCAAATCATGATATATAGT 58.406 33.333 9.04 0.00 0.00 2.12
3206 3463 1.040646 CAGGCAGGTAGAAGGCGATA 58.959 55.000 0.00 0.00 35.18 2.92
3220 3477 6.159299 TCAATTCATCTTTGTTTTCAGGCA 57.841 33.333 0.00 0.00 0.00 4.75
3244 3501 6.176896 ACAAAGCAAATTTTGTTTACTGGGT 58.823 32.000 11.00 3.87 46.18 4.51
3314 3760 7.120579 ACAATGCCGATTAGTCTGAAATGTAAA 59.879 33.333 0.00 0.00 0.00 2.01
3339 3787 3.242248 GGATCACGTCGTTGCTATGTTAC 59.758 47.826 0.00 0.00 0.00 2.50
3340 3788 3.441163 GGATCACGTCGTTGCTATGTTA 58.559 45.455 0.00 0.00 0.00 2.41
3361 3820 2.222223 GCGCACGTTAGTTAGTTCTTCG 60.222 50.000 0.30 0.00 0.00 3.79
3365 3824 3.717350 AATGCGCACGTTAGTTAGTTC 57.283 42.857 14.90 0.00 0.00 3.01
3366 3825 3.495377 TGAAATGCGCACGTTAGTTAGTT 59.505 39.130 14.90 0.00 0.00 2.24
3368 3827 3.404564 GTGAAATGCGCACGTTAGTTAG 58.595 45.455 14.90 0.00 0.00 2.34
3369 3828 2.158058 GGTGAAATGCGCACGTTAGTTA 59.842 45.455 14.90 0.00 37.13 2.24
3377 3836 1.966493 ATCGTCGGTGAAATGCGCAC 61.966 55.000 14.90 0.00 35.56 5.34
3381 3840 0.247814 CTGCATCGTCGGTGAAATGC 60.248 55.000 10.33 9.22 43.71 3.56
3521 3980 3.434319 TGCGTCGACCTCCCGTAC 61.434 66.667 10.58 0.00 0.00 3.67
3554 4013 4.021229 TGTGGTAGTGGTAGTACCTGATG 58.979 47.826 20.07 0.00 43.16 3.07
3644 4103 2.658422 GGGACGCCCTCAAACGTA 59.342 61.111 7.58 0.00 43.71 3.57
3647 4106 1.078637 GTAGGGGACGCCCTCAAAC 60.079 63.158 13.58 0.00 44.66 2.93
3720 4179 5.359756 TGTAAGAGATGATCCGATGGTTTG 58.640 41.667 0.00 0.00 0.00 2.93
3722 4181 5.815233 ATGTAAGAGATGATCCGATGGTT 57.185 39.130 0.00 0.00 0.00 3.67
3755 4222 4.341783 GCCACCTCCAGCTGCTGT 62.342 66.667 26.41 6.79 0.00 4.40
3760 4227 4.031129 CAGCAGCCACCTCCAGCT 62.031 66.667 0.00 0.00 40.89 4.24
3797 4271 6.761242 TCTCCACACATCCTAAATAAACATCG 59.239 38.462 0.00 0.00 0.00 3.84
3877 4360 1.062962 CCCCATTAAGTGAAGGGCCAT 60.063 52.381 6.18 0.00 37.69 4.40
3889 4372 4.470334 GCAAAAAGCAGATCCCCATTAA 57.530 40.909 0.00 0.00 44.79 1.40
3923 4418 5.298026 AGCAGAAAAAGGTGAAGAGAAAGAC 59.702 40.000 0.00 0.00 0.00 3.01
3924 4419 5.440610 AGCAGAAAAAGGTGAAGAGAAAGA 58.559 37.500 0.00 0.00 0.00 2.52
3925 4420 5.764487 AGCAGAAAAAGGTGAAGAGAAAG 57.236 39.130 0.00 0.00 0.00 2.62
3926 4421 5.418840 ACAAGCAGAAAAAGGTGAAGAGAAA 59.581 36.000 0.00 0.00 0.00 2.52
3927 4422 4.949856 ACAAGCAGAAAAAGGTGAAGAGAA 59.050 37.500 0.00 0.00 0.00 2.87
3928 4423 4.526970 ACAAGCAGAAAAAGGTGAAGAGA 58.473 39.130 0.00 0.00 0.00 3.10
3929 4424 4.261363 GGACAAGCAGAAAAAGGTGAAGAG 60.261 45.833 0.00 0.00 0.00 2.85
3930 4425 3.632145 GGACAAGCAGAAAAAGGTGAAGA 59.368 43.478 0.00 0.00 0.00 2.87
3931 4426 3.243535 GGGACAAGCAGAAAAAGGTGAAG 60.244 47.826 0.00 0.00 0.00 3.02
3932 4427 2.693074 GGGACAAGCAGAAAAAGGTGAA 59.307 45.455 0.00 0.00 0.00 3.18
3933 4428 2.306847 GGGACAAGCAGAAAAAGGTGA 58.693 47.619 0.00 0.00 0.00 4.02
3934 4429 1.341209 GGGGACAAGCAGAAAAAGGTG 59.659 52.381 0.00 0.00 0.00 4.00
3966 4461 9.579932 AACATCATCACTCTACACAGATCTATA 57.420 33.333 0.00 0.00 0.00 1.31
3967 4462 8.358895 CAACATCATCACTCTACACAGATCTAT 58.641 37.037 0.00 0.00 0.00 1.98
3968 4463 7.201857 CCAACATCATCACTCTACACAGATCTA 60.202 40.741 0.00 0.00 0.00 1.98
3969 4464 6.406737 CCAACATCATCACTCTACACAGATCT 60.407 42.308 0.00 0.00 0.00 2.75
3970 4465 5.752472 CCAACATCATCACTCTACACAGATC 59.248 44.000 0.00 0.00 0.00 2.75
3971 4466 5.668471 CCAACATCATCACTCTACACAGAT 58.332 41.667 0.00 0.00 0.00 2.90
3972 4467 4.621510 GCCAACATCATCACTCTACACAGA 60.622 45.833 0.00 0.00 0.00 3.41
3973 4468 3.620374 GCCAACATCATCACTCTACACAG 59.380 47.826 0.00 0.00 0.00 3.66
3982 4480 4.622740 GCAGTAAAAAGCCAACATCATCAC 59.377 41.667 0.00 0.00 0.00 3.06
4038 4539 8.952278 ACTTTTTGACACTTTGTAGTATGTGAA 58.048 29.630 0.00 0.00 34.81 3.18
4040 4541 8.394877 TCACTTTTTGACACTTTGTAGTATGTG 58.605 33.333 0.00 0.00 36.59 3.21
4041 4542 8.500753 TCACTTTTTGACACTTTGTAGTATGT 57.499 30.769 0.00 0.00 31.96 2.29
4042 4543 8.070171 CCTCACTTTTTGACACTTTGTAGTATG 58.930 37.037 0.00 0.00 31.96 2.39
4043 4544 7.255139 GCCTCACTTTTTGACACTTTGTAGTAT 60.255 37.037 0.00 0.00 31.96 2.12
4044 4545 6.037830 GCCTCACTTTTTGACACTTTGTAGTA 59.962 38.462 0.00 0.00 31.96 1.82
4045 4546 5.163652 GCCTCACTTTTTGACACTTTGTAGT 60.164 40.000 0.00 0.00 34.00 2.73
4046 4547 5.273944 GCCTCACTTTTTGACACTTTGTAG 58.726 41.667 0.00 0.00 0.00 2.74
4047 4548 4.201871 CGCCTCACTTTTTGACACTTTGTA 60.202 41.667 0.00 0.00 0.00 2.41
4087 4588 6.532657 GGCCAAAAAGATCACAAATGATGTAG 59.467 38.462 0.00 0.00 46.01 2.74
4127 4951 1.450312 CATCCACCGTCCCTGCTTC 60.450 63.158 0.00 0.00 0.00 3.86
4130 4954 2.666596 GATCCATCCACCGTCCCTGC 62.667 65.000 0.00 0.00 0.00 4.85
4138 4962 0.814010 CCGGTTTCGATCCATCCACC 60.814 60.000 0.00 0.00 39.00 4.61
4139 4963 0.814010 CCCGGTTTCGATCCATCCAC 60.814 60.000 0.00 0.00 39.00 4.02
4140 4964 1.524961 CCCGGTTTCGATCCATCCA 59.475 57.895 0.00 0.00 39.00 3.41
4141 4965 1.227853 CCCCGGTTTCGATCCATCC 60.228 63.158 0.00 0.00 39.00 3.51
4159 4983 1.865340 GAAAACACCACACCTCGTCTC 59.135 52.381 0.00 0.00 0.00 3.36
4167 4996 0.748729 TGACCCGGAAAACACCACAC 60.749 55.000 0.73 0.00 0.00 3.82
4174 5003 0.747852 TTTTGCCTGACCCGGAAAAC 59.252 50.000 0.73 0.00 31.22 2.43
4185 5014 0.952010 GTGCCAGCCATTTTTGCCTG 60.952 55.000 0.00 0.00 0.00 4.85
4247 5080 2.072487 CCCGTCCATCACCCCTGAT 61.072 63.158 0.00 0.00 37.65 2.90
4261 5094 1.001760 ATACCAGTCTCAGGCCCGT 59.998 57.895 0.00 0.00 0.00 5.28
4262 5095 1.443407 CATACCAGTCTCAGGCCCG 59.557 63.158 0.00 0.00 0.00 6.13
4263 5096 1.700042 CCCATACCAGTCTCAGGCCC 61.700 65.000 0.00 0.00 0.00 5.80
4264 5097 0.691078 TCCCATACCAGTCTCAGGCC 60.691 60.000 0.00 0.00 0.00 5.19
4277 5110 1.000739 ACCGTTCGTCCCTCCCATA 59.999 57.895 0.00 0.00 0.00 2.74
4463 5306 1.468520 CCCGTGAACCAATCATCACAC 59.531 52.381 6.70 0.00 44.84 3.82
4500 5344 2.998097 CCCCGATCTTGGAAGGCA 59.002 61.111 0.00 0.00 0.00 4.75
4521 5365 3.403057 CGTTCCGTGGAGTGCACG 61.403 66.667 27.94 27.94 44.67 5.34
4527 5371 1.434555 TACATTTGCGTTCCGTGGAG 58.565 50.000 0.00 0.00 0.00 3.86
4533 5377 2.989422 ACAGCTTACATTTGCGTTCC 57.011 45.000 0.00 0.00 0.00 3.62
4535 5379 3.380142 CCAAACAGCTTACATTTGCGTT 58.620 40.909 0.00 0.00 32.98 4.84
4536 5380 2.862140 GCCAAACAGCTTACATTTGCGT 60.862 45.455 0.00 0.00 32.98 5.24
4545 5389 2.941210 CCGAAGGCCAAACAGCTTA 58.059 52.632 5.01 0.00 46.14 3.09
4546 5390 3.763671 CCGAAGGCCAAACAGCTT 58.236 55.556 5.01 0.00 46.14 3.74
4558 5402 0.035056 AGCAAATCCCAGGTCCGAAG 60.035 55.000 0.00 0.00 0.00 3.79
4559 5403 1.281419 TAGCAAATCCCAGGTCCGAA 58.719 50.000 0.00 0.00 0.00 4.30
4560 5404 1.507140 ATAGCAAATCCCAGGTCCGA 58.493 50.000 0.00 0.00 0.00 4.55
4561 5405 1.949525 CAATAGCAAATCCCAGGTCCG 59.050 52.381 0.00 0.00 0.00 4.79
4562 5406 1.683385 GCAATAGCAAATCCCAGGTCC 59.317 52.381 0.00 0.00 41.58 4.46
4563 5407 2.360165 CAGCAATAGCAAATCCCAGGTC 59.640 50.000 0.00 0.00 45.49 3.85
4564 5408 2.381911 CAGCAATAGCAAATCCCAGGT 58.618 47.619 0.00 0.00 45.49 4.00
4565 5409 1.684983 CCAGCAATAGCAAATCCCAGG 59.315 52.381 0.00 0.00 45.49 4.45
4566 5410 1.068127 GCCAGCAATAGCAAATCCCAG 59.932 52.381 0.00 0.00 45.49 4.45
4567 5411 1.113788 GCCAGCAATAGCAAATCCCA 58.886 50.000 0.00 0.00 45.49 4.37
4568 5412 0.390492 GGCCAGCAATAGCAAATCCC 59.610 55.000 0.00 0.00 45.49 3.85
4569 5413 1.068127 CAGGCCAGCAATAGCAAATCC 59.932 52.381 5.01 0.00 45.49 3.01
4570 5414 1.068127 CCAGGCCAGCAATAGCAAATC 59.932 52.381 5.01 0.00 45.49 2.17
4571 5415 1.117150 CCAGGCCAGCAATAGCAAAT 58.883 50.000 5.01 0.00 45.49 2.32
4572 5416 0.251742 ACCAGGCCAGCAATAGCAAA 60.252 50.000 5.01 0.00 45.49 3.68
4573 5417 0.251742 AACCAGGCCAGCAATAGCAA 60.252 50.000 5.01 0.00 45.49 3.91
4574 5418 0.251742 AAACCAGGCCAGCAATAGCA 60.252 50.000 5.01 0.00 45.49 3.49
4575 5419 0.897621 AAAACCAGGCCAGCAATAGC 59.102 50.000 5.01 0.00 42.56 2.97
4576 5420 3.509575 TGTTAAAACCAGGCCAGCAATAG 59.490 43.478 5.01 0.00 0.00 1.73
4577 5421 3.257127 GTGTTAAAACCAGGCCAGCAATA 59.743 43.478 5.01 0.00 0.00 1.90
4578 5422 2.037121 GTGTTAAAACCAGGCCAGCAAT 59.963 45.455 5.01 0.00 0.00 3.56
4579 5423 1.410882 GTGTTAAAACCAGGCCAGCAA 59.589 47.619 5.01 0.00 0.00 3.91
4580 5424 1.036707 GTGTTAAAACCAGGCCAGCA 58.963 50.000 5.01 0.00 0.00 4.41
4581 5425 0.317160 GGTGTTAAAACCAGGCCAGC 59.683 55.000 10.17 0.00 40.22 4.85
4582 5426 0.596082 CGGTGTTAAAACCAGGCCAG 59.404 55.000 15.30 0.00 40.53 4.85
4583 5427 0.106619 ACGGTGTTAAAACCAGGCCA 60.107 50.000 15.30 0.00 40.53 5.36
4584 5428 0.594602 GACGGTGTTAAAACCAGGCC 59.405 55.000 15.30 0.00 40.53 5.19
4585 5429 0.594602 GGACGGTGTTAAAACCAGGC 59.405 55.000 15.30 9.43 40.53 4.85
4586 5430 1.970092 TGGACGGTGTTAAAACCAGG 58.030 50.000 15.30 2.04 40.53 4.45
4587 5431 3.408634 AGATGGACGGTGTTAAAACCAG 58.591 45.455 15.30 9.85 40.53 4.00
4588 5432 3.495434 AGATGGACGGTGTTAAAACCA 57.505 42.857 15.30 0.00 40.53 3.67
4589 5433 4.841443 AAAGATGGACGGTGTTAAAACC 57.159 40.909 4.53 4.53 36.82 3.27
4590 5434 5.217393 GGAAAAGATGGACGGTGTTAAAAC 58.783 41.667 0.00 0.00 0.00 2.43
4591 5435 4.023878 CGGAAAAGATGGACGGTGTTAAAA 60.024 41.667 0.00 0.00 0.00 1.52
4592 5436 3.499157 CGGAAAAGATGGACGGTGTTAAA 59.501 43.478 0.00 0.00 0.00 1.52
4593 5437 3.068560 CGGAAAAGATGGACGGTGTTAA 58.931 45.455 0.00 0.00 0.00 2.01
4594 5438 2.613474 CCGGAAAAGATGGACGGTGTTA 60.613 50.000 0.00 0.00 39.70 2.41
4595 5439 1.519408 CGGAAAAGATGGACGGTGTT 58.481 50.000 0.00 0.00 0.00 3.32
4596 5440 0.321298 CCGGAAAAGATGGACGGTGT 60.321 55.000 0.00 0.00 39.70 4.16
4597 5441 1.644786 GCCGGAAAAGATGGACGGTG 61.645 60.000 5.05 0.00 45.85 4.94
4598 5442 1.376812 GCCGGAAAAGATGGACGGT 60.377 57.895 5.05 0.00 45.85 4.83
4599 5443 1.078426 AGCCGGAAAAGATGGACGG 60.078 57.895 5.05 0.00 46.78 4.79
4600 5444 1.090052 GGAGCCGGAAAAGATGGACG 61.090 60.000 5.05 0.00 0.00 4.79
4601 5445 1.090052 CGGAGCCGGAAAAGATGGAC 61.090 60.000 5.05 0.00 35.56 4.02
4602 5446 1.220749 CGGAGCCGGAAAAGATGGA 59.779 57.895 5.05 0.00 35.56 3.41
4603 5447 3.813596 CGGAGCCGGAAAAGATGG 58.186 61.111 5.05 0.00 35.56 3.51
4620 5464 0.913924 TCTCCATTTTCCGGTACCCC 59.086 55.000 6.25 0.00 0.00 4.95
4621 5465 2.793288 TTCTCCATTTTCCGGTACCC 57.207 50.000 6.25 0.00 0.00 3.69
4622 5466 5.184287 TCAAATTTCTCCATTTTCCGGTACC 59.816 40.000 0.16 0.16 0.00 3.34
4623 5467 6.262193 TCAAATTTCTCCATTTTCCGGTAC 57.738 37.500 0.00 0.00 0.00 3.34
4624 5468 6.889722 AGATCAAATTTCTCCATTTTCCGGTA 59.110 34.615 0.00 0.00 0.00 4.02
4625 5469 5.716703 AGATCAAATTTCTCCATTTTCCGGT 59.283 36.000 0.00 0.00 0.00 5.28
4626 5470 6.212888 AGATCAAATTTCTCCATTTTCCGG 57.787 37.500 0.00 0.00 0.00 5.14
4627 5471 9.076596 GTTAAGATCAAATTTCTCCATTTTCCG 57.923 33.333 0.00 0.00 0.00 4.30
4628 5472 9.371136 GGTTAAGATCAAATTTCTCCATTTTCC 57.629 33.333 0.00 0.00 0.00 3.13
4629 5473 9.371136 GGGTTAAGATCAAATTTCTCCATTTTC 57.629 33.333 0.00 0.00 0.00 2.29
4630 5474 8.879227 TGGGTTAAGATCAAATTTCTCCATTTT 58.121 29.630 0.00 0.00 0.00 1.82
4631 5475 8.314021 GTGGGTTAAGATCAAATTTCTCCATTT 58.686 33.333 0.00 0.00 0.00 2.32
4632 5476 7.454380 TGTGGGTTAAGATCAAATTTCTCCATT 59.546 33.333 0.00 0.00 0.00 3.16
4633 5477 6.953520 TGTGGGTTAAGATCAAATTTCTCCAT 59.046 34.615 0.00 0.00 0.00 3.41
4634 5478 6.208599 GTGTGGGTTAAGATCAAATTTCTCCA 59.791 38.462 0.00 0.00 0.00 3.86
4635 5479 6.434340 AGTGTGGGTTAAGATCAAATTTCTCC 59.566 38.462 0.00 0.00 0.00 3.71
4636 5480 7.454260 AGTGTGGGTTAAGATCAAATTTCTC 57.546 36.000 0.00 0.00 0.00 2.87
4637 5481 7.839680 AAGTGTGGGTTAAGATCAAATTTCT 57.160 32.000 0.00 0.00 0.00 2.52
4638 5482 9.406828 GTAAAGTGTGGGTTAAGATCAAATTTC 57.593 33.333 0.00 0.00 0.00 2.17
4639 5483 9.143155 AGTAAAGTGTGGGTTAAGATCAAATTT 57.857 29.630 0.00 0.00 0.00 1.82
4640 5484 8.706322 AGTAAAGTGTGGGTTAAGATCAAATT 57.294 30.769 0.00 0.00 0.00 1.82
4641 5485 9.227777 GTAGTAAAGTGTGGGTTAAGATCAAAT 57.772 33.333 0.00 0.00 0.00 2.32
4642 5486 8.434392 AGTAGTAAAGTGTGGGTTAAGATCAAA 58.566 33.333 0.00 0.00 0.00 2.69
4643 5487 7.970102 AGTAGTAAAGTGTGGGTTAAGATCAA 58.030 34.615 0.00 0.00 0.00 2.57
4644 5488 7.310237 GGAGTAGTAAAGTGTGGGTTAAGATCA 60.310 40.741 0.00 0.00 0.00 2.92
4645 5489 7.040494 GGAGTAGTAAAGTGTGGGTTAAGATC 58.960 42.308 0.00 0.00 0.00 2.75
4646 5490 6.070366 GGGAGTAGTAAAGTGTGGGTTAAGAT 60.070 42.308 0.00 0.00 0.00 2.40
4647 5491 5.246883 GGGAGTAGTAAAGTGTGGGTTAAGA 59.753 44.000 0.00 0.00 0.00 2.10
4648 5492 5.247792 AGGGAGTAGTAAAGTGTGGGTTAAG 59.752 44.000 0.00 0.00 0.00 1.85
4649 5493 5.157395 AGGGAGTAGTAAAGTGTGGGTTAA 58.843 41.667 0.00 0.00 0.00 2.01
4650 5494 4.755437 AGGGAGTAGTAAAGTGTGGGTTA 58.245 43.478 0.00 0.00 0.00 2.85
4651 5495 3.581770 GAGGGAGTAGTAAAGTGTGGGTT 59.418 47.826 0.00 0.00 0.00 4.11
4652 5496 3.171528 GAGGGAGTAGTAAAGTGTGGGT 58.828 50.000 0.00 0.00 0.00 4.51
4653 5497 2.500504 GGAGGGAGTAGTAAAGTGTGGG 59.499 54.545 0.00 0.00 0.00 4.61
4654 5498 2.165845 CGGAGGGAGTAGTAAAGTGTGG 59.834 54.545 0.00 0.00 0.00 4.17
4655 5499 2.824341 ACGGAGGGAGTAGTAAAGTGTG 59.176 50.000 0.00 0.00 0.00 3.82
4656 5500 3.087781 GACGGAGGGAGTAGTAAAGTGT 58.912 50.000 0.00 0.00 0.00 3.55
4657 5501 3.354467 AGACGGAGGGAGTAGTAAAGTG 58.646 50.000 0.00 0.00 0.00 3.16
4658 5502 3.009916 TGAGACGGAGGGAGTAGTAAAGT 59.990 47.826 0.00 0.00 0.00 2.66
4659 5503 3.618351 TGAGACGGAGGGAGTAGTAAAG 58.382 50.000 0.00 0.00 0.00 1.85
4660 5504 3.726557 TGAGACGGAGGGAGTAGTAAA 57.273 47.619 0.00 0.00 0.00 2.01
4661 5505 3.947612 ATGAGACGGAGGGAGTAGTAA 57.052 47.619 0.00 0.00 0.00 2.24
4662 5506 5.579753 ATTATGAGACGGAGGGAGTAGTA 57.420 43.478 0.00 0.00 0.00 1.82
4663 5507 3.947612 TTATGAGACGGAGGGAGTAGT 57.052 47.619 0.00 0.00 0.00 2.73
4664 5508 8.047911 TCTTATATTATGAGACGGAGGGAGTAG 58.952 40.741 0.00 0.00 0.00 2.57
4665 5509 7.828223 GTCTTATATTATGAGACGGAGGGAGTA 59.172 40.741 11.50 0.00 36.39 2.59
4666 5510 6.660094 GTCTTATATTATGAGACGGAGGGAGT 59.340 42.308 11.50 0.00 36.39 3.85
4667 5511 7.090953 GTCTTATATTATGAGACGGAGGGAG 57.909 44.000 11.50 0.00 36.39 4.30
4675 5519 8.062448 GTGCCAAAACGTCTTATATTATGAGAC 58.938 37.037 15.28 15.28 41.11 3.36
4676 5520 7.985184 AGTGCCAAAACGTCTTATATTATGAGA 59.015 33.333 0.00 0.00 0.00 3.27
4677 5521 8.142994 AGTGCCAAAACGTCTTATATTATGAG 57.857 34.615 0.00 0.00 0.00 2.90
4678 5522 9.256477 CTAGTGCCAAAACGTCTTATATTATGA 57.744 33.333 0.00 0.00 0.00 2.15
4679 5523 9.042008 ACTAGTGCCAAAACGTCTTATATTATG 57.958 33.333 0.00 0.00 0.00 1.90
4680 5524 9.042008 CACTAGTGCCAAAACGTCTTATATTAT 57.958 33.333 10.54 0.00 0.00 1.28
4681 5525 8.036575 ACACTAGTGCCAAAACGTCTTATATTA 58.963 33.333 22.90 0.00 0.00 0.98
4682 5526 6.877322 ACACTAGTGCCAAAACGTCTTATATT 59.123 34.615 22.90 0.00 0.00 1.28
4683 5527 6.403878 ACACTAGTGCCAAAACGTCTTATAT 58.596 36.000 22.90 0.00 0.00 0.86
4684 5528 5.786311 ACACTAGTGCCAAAACGTCTTATA 58.214 37.500 22.90 0.00 0.00 0.98
4685 5529 4.638304 ACACTAGTGCCAAAACGTCTTAT 58.362 39.130 22.90 0.00 0.00 1.73
4686 5530 4.062677 ACACTAGTGCCAAAACGTCTTA 57.937 40.909 22.90 0.00 0.00 2.10
4687 5531 2.914059 ACACTAGTGCCAAAACGTCTT 58.086 42.857 22.90 0.00 0.00 3.01
4688 5532 2.614829 ACACTAGTGCCAAAACGTCT 57.385 45.000 22.90 0.00 0.00 4.18
4689 5533 3.387397 ACTACACTAGTGCCAAAACGTC 58.613 45.455 22.90 0.00 37.69 4.34
4690 5534 3.464111 ACTACACTAGTGCCAAAACGT 57.536 42.857 22.90 3.20 37.69 3.99
4719 5563 9.784531 CTCCCTCTGTCACATAATATAAAATGT 57.215 33.333 0.00 0.00 36.78 2.71
4720 5564 9.784531 ACTCCCTCTGTCACATAATATAAAATG 57.215 33.333 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.