Multiple sequence alignment - TraesCS6B01G304700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G304700 chr6B 100.000 2417 0 0 1 2417 545280267 545277851 0.000000e+00 4464
1 TraesCS6B01G304700 chr6A 90.283 1451 89 21 298 1706 503835250 503833810 0.000000e+00 1851
2 TraesCS6B01G304700 chr6D 88.582 1305 79 37 450 1706 363321128 363319846 0.000000e+00 1520
3 TraesCS6B01G304700 chr5B 92.672 655 44 3 1734 2387 558705227 558705878 0.000000e+00 941
4 TraesCS6B01G304700 chr5B 91.705 651 52 1 1731 2381 406066753 406066105 0.000000e+00 902
5 TraesCS6B01G304700 chr5B 91.502 659 51 4 1731 2387 445179616 445178961 0.000000e+00 902
6 TraesCS6B01G304700 chr5B 91.364 660 51 5 1730 2387 20151074 20151729 0.000000e+00 898
7 TraesCS6B01G304700 chr5B 93.213 221 14 1 1 220 682190889 682191109 8.330000e-85 324
8 TraesCS6B01G304700 chr5B 91.244 217 14 4 5 219 387362070 387362283 8.450000e-75 291
9 TraesCS6B01G304700 chr3B 91.806 659 49 4 1731 2387 49870013 49869358 0.000000e+00 913
10 TraesCS6B01G304700 chr7B 91.781 657 49 3 1732 2387 217303294 217303946 0.000000e+00 909
11 TraesCS6B01G304700 chr7B 93.519 216 11 3 5 219 40196850 40196637 3.880000e-83 318
12 TraesCS6B01G304700 chr7B 83.146 178 24 3 1237 1414 334798533 334798704 8.950000e-35 158
13 TraesCS6B01G304700 chr3D 91.756 655 50 2 1735 2389 505410803 505410153 0.000000e+00 907
14 TraesCS6B01G304700 chr3D 92.593 81 4 2 213 291 179916743 179916663 5.460000e-22 115
15 TraesCS6B01G304700 chr4B 91.502 659 51 4 1731 2387 16082502 16081847 0.000000e+00 902
16 TraesCS6B01G304700 chr4B 91.225 661 53 4 1728 2387 617392717 617393373 0.000000e+00 894
17 TraesCS6B01G304700 chr2D 92.683 82 4 2 213 292 110637201 110637282 1.520000e-22 117
18 TraesCS6B01G304700 chr2D 92.500 80 4 2 213 290 49614533 49614454 1.960000e-21 113
19 TraesCS6B01G304700 chr2D 92.500 80 4 2 213 290 629478048 629478127 1.960000e-21 113
20 TraesCS6B01G304700 chr2D 91.250 80 4 2 213 289 578941728 578941807 3.290000e-19 106
21 TraesCS6B01G304700 chr7D 91.250 80 5 2 213 290 563845888 563845967 9.140000e-20 108
22 TraesCS6B01G304700 chr4D 91.250 80 5 2 213 290 310113692 310113771 9.140000e-20 108
23 TraesCS6B01G304700 chr5D 90.244 82 6 2 213 292 499958863 499958782 3.290000e-19 106
24 TraesCS6B01G304700 chr1B 86.275 102 6 8 213 307 671524241 671524341 1.180000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G304700 chr6B 545277851 545280267 2416 True 4464 4464 100.000 1 2417 1 chr6B.!!$R1 2416
1 TraesCS6B01G304700 chr6A 503833810 503835250 1440 True 1851 1851 90.283 298 1706 1 chr6A.!!$R1 1408
2 TraesCS6B01G304700 chr6D 363319846 363321128 1282 True 1520 1520 88.582 450 1706 1 chr6D.!!$R1 1256
3 TraesCS6B01G304700 chr5B 558705227 558705878 651 False 941 941 92.672 1734 2387 1 chr5B.!!$F3 653
4 TraesCS6B01G304700 chr5B 406066105 406066753 648 True 902 902 91.705 1731 2381 1 chr5B.!!$R1 650
5 TraesCS6B01G304700 chr5B 445178961 445179616 655 True 902 902 91.502 1731 2387 1 chr5B.!!$R2 656
6 TraesCS6B01G304700 chr5B 20151074 20151729 655 False 898 898 91.364 1730 2387 1 chr5B.!!$F1 657
7 TraesCS6B01G304700 chr3B 49869358 49870013 655 True 913 913 91.806 1731 2387 1 chr3B.!!$R1 656
8 TraesCS6B01G304700 chr7B 217303294 217303946 652 False 909 909 91.781 1732 2387 1 chr7B.!!$F1 655
9 TraesCS6B01G304700 chr3D 505410153 505410803 650 True 907 907 91.756 1735 2389 1 chr3D.!!$R2 654
10 TraesCS6B01G304700 chr4B 16081847 16082502 655 True 902 902 91.502 1731 2387 1 chr4B.!!$R1 656
11 TraesCS6B01G304700 chr4B 617392717 617393373 656 False 894 894 91.225 1728 2387 1 chr4B.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.033504 TTGTCCAGCGAAGACACCTC 59.966 55.0 6.08 0.0 43.7 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1893 0.311165 CGCTAGGTGGTCTACGGATG 59.689 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.824166 GCCTGCAAGCGCGACATG 62.824 66.667 12.10 6.01 42.97 3.21
22 23 4.170062 CCTGCAAGCGCGACATGG 62.170 66.667 12.10 0.00 42.97 3.66
23 24 3.120385 CTGCAAGCGCGACATGGA 61.120 61.111 12.10 5.15 42.97 3.41
24 25 3.092192 CTGCAAGCGCGACATGGAG 62.092 63.158 12.10 11.91 42.97 3.86
25 26 4.527157 GCAAGCGCGACATGGAGC 62.527 66.667 12.10 0.57 0.00 4.70
26 27 3.120385 CAAGCGCGACATGGAGCA 61.120 61.111 12.10 0.00 34.98 4.26
27 28 2.358615 AAGCGCGACATGGAGCAA 60.359 55.556 12.10 0.00 34.98 3.91
28 29 1.746615 AAGCGCGACATGGAGCAAT 60.747 52.632 12.10 0.39 34.98 3.56
29 30 1.985447 AAGCGCGACATGGAGCAATG 61.985 55.000 12.10 0.00 34.98 2.82
30 31 2.711311 CGCGACATGGAGCAATGG 59.289 61.111 0.00 0.00 31.46 3.16
31 32 2.410469 GCGACATGGAGCAATGGC 59.590 61.111 9.38 0.00 41.61 4.40
55 56 3.762247 CCGGGGCCAAGTGCATTG 61.762 66.667 4.39 0.00 43.89 2.82
56 57 2.676121 CGGGGCCAAGTGCATTGA 60.676 61.111 4.39 0.00 41.83 2.57
57 58 2.703798 CGGGGCCAAGTGCATTGAG 61.704 63.158 4.39 3.19 41.83 3.02
58 59 1.607467 GGGGCCAAGTGCATTGAGT 60.607 57.895 4.39 0.00 41.83 3.41
59 60 1.187567 GGGGCCAAGTGCATTGAGTT 61.188 55.000 4.39 0.00 41.83 3.01
60 61 1.544724 GGGCCAAGTGCATTGAGTTA 58.455 50.000 4.39 0.00 41.83 2.24
61 62 1.202348 GGGCCAAGTGCATTGAGTTAC 59.798 52.381 4.39 0.00 41.83 2.50
62 63 1.202348 GGCCAAGTGCATTGAGTTACC 59.798 52.381 0.00 2.00 41.83 2.85
63 64 1.202348 GCCAAGTGCATTGAGTTACCC 59.798 52.381 9.56 0.00 41.83 3.69
64 65 2.795329 CCAAGTGCATTGAGTTACCCT 58.205 47.619 9.56 0.00 41.83 4.34
65 66 3.157087 CCAAGTGCATTGAGTTACCCTT 58.843 45.455 9.56 0.00 41.83 3.95
66 67 3.573967 CCAAGTGCATTGAGTTACCCTTT 59.426 43.478 9.56 0.00 41.83 3.11
67 68 4.549458 CAAGTGCATTGAGTTACCCTTTG 58.451 43.478 0.00 0.00 41.83 2.77
68 69 3.157087 AGTGCATTGAGTTACCCTTTGG 58.843 45.455 0.00 0.00 37.80 3.28
69 70 7.518600 CAAGTGCATTGAGTTACCCTTTGGG 62.519 48.000 0.32 0.32 44.81 4.12
81 82 2.554370 CCTTTGGGGAAGTAACGTGA 57.446 50.000 0.00 0.00 37.23 4.35
82 83 2.853705 CCTTTGGGGAAGTAACGTGAA 58.146 47.619 0.00 0.00 37.23 3.18
83 84 3.215975 CCTTTGGGGAAGTAACGTGAAA 58.784 45.455 0.00 0.00 37.23 2.69
84 85 3.633065 CCTTTGGGGAAGTAACGTGAAAA 59.367 43.478 0.00 0.00 37.23 2.29
85 86 4.279922 CCTTTGGGGAAGTAACGTGAAAAT 59.720 41.667 0.00 0.00 37.23 1.82
86 87 5.474189 CCTTTGGGGAAGTAACGTGAAAATA 59.526 40.000 0.00 0.00 37.23 1.40
87 88 6.152154 CCTTTGGGGAAGTAACGTGAAAATAT 59.848 38.462 0.00 0.00 37.23 1.28
88 89 7.309560 CCTTTGGGGAAGTAACGTGAAAATATT 60.310 37.037 0.00 0.00 37.23 1.28
89 90 6.746745 TGGGGAAGTAACGTGAAAATATTC 57.253 37.500 0.00 0.00 36.04 1.75
90 91 5.648960 TGGGGAAGTAACGTGAAAATATTCC 59.351 40.000 0.00 0.00 34.49 3.01
91 92 5.648960 GGGGAAGTAACGTGAAAATATTCCA 59.351 40.000 12.17 0.00 37.32 3.53
92 93 6.320418 GGGGAAGTAACGTGAAAATATTCCAT 59.680 38.462 12.17 0.00 37.32 3.41
93 94 7.499895 GGGGAAGTAACGTGAAAATATTCCATA 59.500 37.037 12.17 0.00 37.32 2.74
94 95 8.557029 GGGAAGTAACGTGAAAATATTCCATAG 58.443 37.037 12.17 0.00 37.32 2.23
95 96 8.557029 GGAAGTAACGTGAAAATATTCCATAGG 58.443 37.037 0.00 0.00 35.97 2.57
96 97 9.321562 GAAGTAACGTGAAAATATTCCATAGGA 57.678 33.333 0.00 0.00 34.49 2.94
97 98 8.658499 AGTAACGTGAAAATATTCCATAGGAC 57.342 34.615 0.00 0.00 34.49 3.85
98 99 8.483758 AGTAACGTGAAAATATTCCATAGGACT 58.516 33.333 0.00 0.00 34.49 3.85
99 100 9.106070 GTAACGTGAAAATATTCCATAGGACTT 57.894 33.333 0.00 0.00 34.49 3.01
101 102 8.888579 ACGTGAAAATATTCCATAGGACTTAG 57.111 34.615 0.00 0.00 34.49 2.18
102 103 7.931948 ACGTGAAAATATTCCATAGGACTTAGG 59.068 37.037 0.00 0.00 34.49 2.69
103 104 7.095187 CGTGAAAATATTCCATAGGACTTAGGC 60.095 40.741 0.00 0.00 34.49 3.93
104 105 7.175119 GTGAAAATATTCCATAGGACTTAGGCC 59.825 40.741 0.00 0.00 34.49 5.19
105 106 5.780958 AATATTCCATAGGACTTAGGCCC 57.219 43.478 0.00 0.00 0.00 5.80
106 107 2.579624 TTCCATAGGACTTAGGCCCA 57.420 50.000 0.00 0.00 0.00 5.36
107 108 2.103153 TCCATAGGACTTAGGCCCAG 57.897 55.000 0.00 0.00 0.00 4.45
108 109 0.398318 CCATAGGACTTAGGCCCAGC 59.602 60.000 0.00 0.00 0.00 4.85
109 110 1.428869 CATAGGACTTAGGCCCAGCT 58.571 55.000 0.00 0.00 0.00 4.24
110 111 1.771255 CATAGGACTTAGGCCCAGCTT 59.229 52.381 0.00 0.00 0.00 3.74
111 112 1.497161 TAGGACTTAGGCCCAGCTTC 58.503 55.000 0.00 0.00 0.00 3.86
112 113 0.547712 AGGACTTAGGCCCAGCTTCA 60.548 55.000 0.00 0.00 0.00 3.02
113 114 0.107459 GGACTTAGGCCCAGCTTCAG 60.107 60.000 0.00 0.00 0.00 3.02
114 115 0.107459 GACTTAGGCCCAGCTTCAGG 60.107 60.000 0.00 0.00 0.00 3.86
116 117 2.276309 CTTAGGCCCAGCTTCAGGGG 62.276 65.000 9.56 6.12 46.86 4.79
123 124 3.255397 AGCTTCAGGGGCAGCTGT 61.255 61.111 16.64 0.00 44.98 4.40
124 125 1.920325 AGCTTCAGGGGCAGCTGTA 60.920 57.895 16.64 0.00 44.98 2.74
125 126 1.002134 GCTTCAGGGGCAGCTGTAA 60.002 57.895 16.64 0.12 32.87 2.41
126 127 0.394899 GCTTCAGGGGCAGCTGTAAT 60.395 55.000 16.64 0.00 32.87 1.89
127 128 1.957113 GCTTCAGGGGCAGCTGTAATT 60.957 52.381 16.64 0.00 32.87 1.40
128 129 2.450476 CTTCAGGGGCAGCTGTAATTT 58.550 47.619 16.64 0.00 0.00 1.82
129 130 2.603075 TCAGGGGCAGCTGTAATTTT 57.397 45.000 16.64 0.00 0.00 1.82
130 131 2.888212 TCAGGGGCAGCTGTAATTTTT 58.112 42.857 16.64 0.00 0.00 1.94
131 132 2.825532 TCAGGGGCAGCTGTAATTTTTC 59.174 45.455 16.64 0.00 0.00 2.29
132 133 2.094026 CAGGGGCAGCTGTAATTTTTCC 60.094 50.000 16.64 4.83 0.00 3.13
133 134 1.899142 GGGGCAGCTGTAATTTTTCCA 59.101 47.619 16.64 0.00 0.00 3.53
134 135 2.501316 GGGGCAGCTGTAATTTTTCCAT 59.499 45.455 16.64 0.00 0.00 3.41
135 136 3.430790 GGGGCAGCTGTAATTTTTCCATC 60.431 47.826 16.64 0.00 0.00 3.51
136 137 3.448660 GGGCAGCTGTAATTTTTCCATCT 59.551 43.478 16.64 0.00 0.00 2.90
137 138 4.081476 GGGCAGCTGTAATTTTTCCATCTT 60.081 41.667 16.64 0.00 0.00 2.40
138 139 5.105063 GGCAGCTGTAATTTTTCCATCTTC 58.895 41.667 16.64 0.00 0.00 2.87
139 140 5.105595 GGCAGCTGTAATTTTTCCATCTTCT 60.106 40.000 16.64 0.00 0.00 2.85
140 141 6.393171 GCAGCTGTAATTTTTCCATCTTCTT 58.607 36.000 16.64 0.00 0.00 2.52
141 142 6.309737 GCAGCTGTAATTTTTCCATCTTCTTG 59.690 38.462 16.64 0.00 0.00 3.02
142 143 7.596494 CAGCTGTAATTTTTCCATCTTCTTGA 58.404 34.615 5.25 0.00 0.00 3.02
143 144 8.248945 CAGCTGTAATTTTTCCATCTTCTTGAT 58.751 33.333 5.25 0.00 35.40 2.57
144 145 8.465201 AGCTGTAATTTTTCCATCTTCTTGATC 58.535 33.333 0.00 0.00 32.05 2.92
145 146 8.246180 GCTGTAATTTTTCCATCTTCTTGATCA 58.754 33.333 0.00 0.00 32.05 2.92
146 147 9.565213 CTGTAATTTTTCCATCTTCTTGATCAC 57.435 33.333 0.00 0.00 32.05 3.06
147 148 9.300681 TGTAATTTTTCCATCTTCTTGATCACT 57.699 29.630 0.00 0.00 32.05 3.41
150 151 7.822161 TTTTTCCATCTTCTTGATCACTTGA 57.178 32.000 0.00 0.00 32.05 3.02
151 152 8.413309 TTTTTCCATCTTCTTGATCACTTGAT 57.587 30.769 0.00 0.00 37.51 2.57
164 165 4.974645 TCACTTGATCACCCTTTGTACT 57.025 40.909 0.00 0.00 0.00 2.73
165 166 4.894784 TCACTTGATCACCCTTTGTACTC 58.105 43.478 0.00 0.00 0.00 2.59
166 167 4.593206 TCACTTGATCACCCTTTGTACTCT 59.407 41.667 0.00 0.00 0.00 3.24
167 168 4.932200 CACTTGATCACCCTTTGTACTCTC 59.068 45.833 0.00 0.00 0.00 3.20
168 169 4.841246 ACTTGATCACCCTTTGTACTCTCT 59.159 41.667 0.00 0.00 0.00 3.10
169 170 5.046950 ACTTGATCACCCTTTGTACTCTCTC 60.047 44.000 0.00 0.00 0.00 3.20
170 171 4.678256 TGATCACCCTTTGTACTCTCTCT 58.322 43.478 0.00 0.00 0.00 3.10
171 172 5.087323 TGATCACCCTTTGTACTCTCTCTT 58.913 41.667 0.00 0.00 0.00 2.85
172 173 5.186021 TGATCACCCTTTGTACTCTCTCTTC 59.814 44.000 0.00 0.00 0.00 2.87
173 174 4.742012 TCACCCTTTGTACTCTCTCTTCT 58.258 43.478 0.00 0.00 0.00 2.85
174 175 4.524714 TCACCCTTTGTACTCTCTCTTCTG 59.475 45.833 0.00 0.00 0.00 3.02
175 176 3.259625 ACCCTTTGTACTCTCTCTTCTGC 59.740 47.826 0.00 0.00 0.00 4.26
176 177 3.513515 CCCTTTGTACTCTCTCTTCTGCT 59.486 47.826 0.00 0.00 0.00 4.24
177 178 4.381505 CCCTTTGTACTCTCTCTTCTGCTC 60.382 50.000 0.00 0.00 0.00 4.26
178 179 4.219507 CCTTTGTACTCTCTCTTCTGCTCA 59.780 45.833 0.00 0.00 0.00 4.26
179 180 5.279206 CCTTTGTACTCTCTCTTCTGCTCAA 60.279 44.000 0.00 0.00 0.00 3.02
180 181 5.791336 TTGTACTCTCTCTTCTGCTCAAA 57.209 39.130 0.00 0.00 0.00 2.69
181 182 5.991933 TGTACTCTCTCTTCTGCTCAAAT 57.008 39.130 0.00 0.00 0.00 2.32
182 183 5.960113 TGTACTCTCTCTTCTGCTCAAATC 58.040 41.667 0.00 0.00 0.00 2.17
183 184 5.478332 TGTACTCTCTCTTCTGCTCAAATCA 59.522 40.000 0.00 0.00 0.00 2.57
184 185 5.480642 ACTCTCTCTTCTGCTCAAATCAA 57.519 39.130 0.00 0.00 0.00 2.57
185 186 6.052405 ACTCTCTCTTCTGCTCAAATCAAT 57.948 37.500 0.00 0.00 0.00 2.57
186 187 5.875910 ACTCTCTCTTCTGCTCAAATCAATG 59.124 40.000 0.00 0.00 0.00 2.82
187 188 6.046290 TCTCTCTTCTGCTCAAATCAATGA 57.954 37.500 0.00 0.00 0.00 2.57
188 189 6.470278 TCTCTCTTCTGCTCAAATCAATGAA 58.530 36.000 0.00 0.00 0.00 2.57
189 190 6.938596 TCTCTCTTCTGCTCAAATCAATGAAA 59.061 34.615 0.00 0.00 0.00 2.69
190 191 7.610692 TCTCTCTTCTGCTCAAATCAATGAAAT 59.389 33.333 0.00 0.00 0.00 2.17
191 192 7.535997 TCTCTTCTGCTCAAATCAATGAAATG 58.464 34.615 0.00 0.00 0.00 2.32
192 193 7.176165 TCTCTTCTGCTCAAATCAATGAAATGT 59.824 33.333 0.00 0.00 0.00 2.71
193 194 7.310664 TCTTCTGCTCAAATCAATGAAATGTC 58.689 34.615 0.00 0.00 0.00 3.06
194 195 6.578163 TCTGCTCAAATCAATGAAATGTCA 57.422 33.333 0.00 0.00 38.41 3.58
195 196 6.617879 TCTGCTCAAATCAATGAAATGTCAG 58.382 36.000 0.00 2.97 37.14 3.51
196 197 5.165676 TGCTCAAATCAATGAAATGTCAGC 58.834 37.500 0.00 0.00 37.14 4.26
197 198 5.165676 GCTCAAATCAATGAAATGTCAGCA 58.834 37.500 0.00 0.00 37.14 4.41
198 199 5.810587 GCTCAAATCAATGAAATGTCAGCAT 59.189 36.000 0.00 0.00 37.14 3.79
199 200 6.312918 GCTCAAATCAATGAAATGTCAGCATT 59.687 34.615 0.00 0.00 46.38 3.56
200 201 7.589574 TCAAATCAATGAAATGTCAGCATTG 57.410 32.000 14.81 14.81 43.89 2.82
201 202 6.091577 TCAAATCAATGAAATGTCAGCATTGC 59.908 34.615 15.61 0.00 45.12 3.56
202 203 4.794278 TCAATGAAATGTCAGCATTGCT 57.206 36.364 5.03 5.03 45.12 3.91
211 212 3.446570 AGCATTGCTGGCCGCTTC 61.447 61.111 11.09 6.88 37.57 3.86
212 213 3.751246 GCATTGCTGGCCGCTTCA 61.751 61.111 18.14 1.98 40.11 3.02
213 214 2.964174 CATTGCTGGCCGCTTCAA 59.036 55.556 18.14 10.35 40.11 2.69
214 215 1.289694 CATTGCTGGCCGCTTCAAA 59.710 52.632 18.14 6.78 40.11 2.69
215 216 0.319727 CATTGCTGGCCGCTTCAAAA 60.320 50.000 18.14 6.47 40.11 2.44
216 217 0.392336 ATTGCTGGCCGCTTCAAAAA 59.608 45.000 18.14 5.87 40.11 1.94
238 239 3.472283 AAAAATGCAGCATGTTGTCCA 57.528 38.095 11.82 1.98 39.31 4.02
239 240 2.736144 AAATGCAGCATGTTGTCCAG 57.264 45.000 9.18 0.00 39.31 3.86
240 241 0.245539 AATGCAGCATGTTGTCCAGC 59.754 50.000 9.18 0.00 39.31 4.85
241 242 1.929806 ATGCAGCATGTTGTCCAGCG 61.930 55.000 7.23 0.00 39.31 5.18
242 243 2.327343 GCAGCATGTTGTCCAGCGA 61.327 57.895 11.44 0.00 39.31 4.93
243 244 1.855213 GCAGCATGTTGTCCAGCGAA 61.855 55.000 11.44 0.00 39.31 4.70
244 245 0.167470 CAGCATGTTGTCCAGCGAAG 59.833 55.000 0.65 0.00 0.00 3.79
245 246 0.035317 AGCATGTTGTCCAGCGAAGA 59.965 50.000 0.00 0.00 0.00 2.87
246 247 0.166814 GCATGTTGTCCAGCGAAGAC 59.833 55.000 0.00 0.00 34.72 3.01
247 248 1.511850 CATGTTGTCCAGCGAAGACA 58.488 50.000 2.85 2.85 42.36 3.41
248 249 1.195448 CATGTTGTCCAGCGAAGACAC 59.805 52.381 6.08 3.76 43.70 3.67
249 250 0.531974 TGTTGTCCAGCGAAGACACC 60.532 55.000 6.08 1.08 43.70 4.16
250 251 0.249911 GTTGTCCAGCGAAGACACCT 60.250 55.000 6.08 0.00 43.70 4.00
251 252 0.033504 TTGTCCAGCGAAGACACCTC 59.966 55.000 6.08 0.00 43.70 3.85
252 253 1.112916 TGTCCAGCGAAGACACCTCA 61.113 55.000 2.85 0.00 39.29 3.86
253 254 0.389166 GTCCAGCGAAGACACCTCAG 60.389 60.000 0.00 0.00 34.27 3.35
254 255 0.539669 TCCAGCGAAGACACCTCAGA 60.540 55.000 0.00 0.00 0.00 3.27
255 256 0.534412 CCAGCGAAGACACCTCAGAT 59.466 55.000 0.00 0.00 0.00 2.90
256 257 1.470632 CCAGCGAAGACACCTCAGATC 60.471 57.143 0.00 0.00 0.00 2.75
257 258 0.453793 AGCGAAGACACCTCAGATCG 59.546 55.000 0.00 0.00 0.00 3.69
258 259 0.171455 GCGAAGACACCTCAGATCGT 59.829 55.000 0.00 0.00 33.18 3.73
259 260 1.400846 GCGAAGACACCTCAGATCGTA 59.599 52.381 0.00 0.00 33.18 3.43
260 261 2.033550 GCGAAGACACCTCAGATCGTAT 59.966 50.000 0.00 0.00 33.18 3.06
261 262 3.622828 CGAAGACACCTCAGATCGTATG 58.377 50.000 0.00 0.00 0.00 2.39
262 263 3.065510 CGAAGACACCTCAGATCGTATGT 59.934 47.826 0.00 0.00 0.00 2.29
263 264 4.272748 CGAAGACACCTCAGATCGTATGTA 59.727 45.833 0.00 0.00 0.00 2.29
264 265 5.502153 AAGACACCTCAGATCGTATGTAC 57.498 43.478 0.00 0.00 0.00 2.90
265 266 4.524053 AGACACCTCAGATCGTATGTACA 58.476 43.478 0.00 0.00 0.00 2.90
266 267 4.948004 AGACACCTCAGATCGTATGTACAA 59.052 41.667 0.00 0.00 0.00 2.41
267 268 5.417894 AGACACCTCAGATCGTATGTACAAA 59.582 40.000 0.00 0.00 0.00 2.83
268 269 5.651530 ACACCTCAGATCGTATGTACAAAG 58.348 41.667 0.00 0.00 0.00 2.77
269 270 5.417894 ACACCTCAGATCGTATGTACAAAGA 59.582 40.000 0.00 0.00 0.00 2.52
270 271 6.096987 ACACCTCAGATCGTATGTACAAAGAT 59.903 38.462 0.00 5.21 0.00 2.40
271 272 6.638873 CACCTCAGATCGTATGTACAAAGATC 59.361 42.308 21.20 21.20 38.29 2.75
272 273 5.853810 CCTCAGATCGTATGTACAAAGATCG 59.146 44.000 21.89 18.41 41.65 3.69
273 274 6.373186 TCAGATCGTATGTACAAAGATCGT 57.627 37.500 21.89 13.57 41.65 3.73
274 275 6.199393 TCAGATCGTATGTACAAAGATCGTG 58.801 40.000 21.89 19.94 41.65 4.35
275 276 5.971792 CAGATCGTATGTACAAAGATCGTGT 59.028 40.000 21.89 9.62 41.65 4.49
276 277 5.971792 AGATCGTATGTACAAAGATCGTGTG 59.028 40.000 21.89 4.03 41.65 3.82
277 278 3.855379 TCGTATGTACAAAGATCGTGTGC 59.145 43.478 13.51 12.63 32.80 4.57
278 279 3.610677 CGTATGTACAAAGATCGTGTGCA 59.389 43.478 19.84 19.84 44.12 4.57
279 280 4.090786 CGTATGTACAAAGATCGTGTGCAA 59.909 41.667 20.87 11.58 43.40 4.08
280 281 5.388994 CGTATGTACAAAGATCGTGTGCAAA 60.389 40.000 20.87 5.66 43.40 3.68
281 282 4.466567 TGTACAAAGATCGTGTGCAAAG 57.533 40.909 16.84 0.00 38.44 2.77
282 283 2.405892 ACAAAGATCGTGTGCAAAGC 57.594 45.000 4.49 0.00 0.00 3.51
283 284 1.675483 ACAAAGATCGTGTGCAAAGCA 59.325 42.857 4.49 0.00 35.60 3.91
284 285 2.098934 ACAAAGATCGTGTGCAAAGCAA 59.901 40.909 4.49 0.00 41.47 3.91
285 286 3.243501 ACAAAGATCGTGTGCAAAGCAAT 60.244 39.130 4.49 0.00 41.47 3.56
286 287 3.648339 AAGATCGTGTGCAAAGCAATT 57.352 38.095 0.00 0.00 41.47 2.32
287 288 3.648339 AGATCGTGTGCAAAGCAATTT 57.352 38.095 0.00 0.00 41.47 1.82
288 289 3.568538 AGATCGTGTGCAAAGCAATTTC 58.431 40.909 0.00 0.00 41.47 2.17
289 290 1.752753 TCGTGTGCAAAGCAATTTCG 58.247 45.000 0.00 0.00 41.47 3.46
290 291 1.064803 TCGTGTGCAAAGCAATTTCGT 59.935 42.857 0.00 0.00 41.47 3.85
291 292 2.288186 TCGTGTGCAAAGCAATTTCGTA 59.712 40.909 0.00 0.00 41.47 3.43
292 293 2.651703 CGTGTGCAAAGCAATTTCGTAG 59.348 45.455 0.00 0.00 41.47 3.51
293 294 3.628017 GTGTGCAAAGCAATTTCGTAGT 58.372 40.909 0.00 0.00 41.47 2.73
294 295 4.609559 CGTGTGCAAAGCAATTTCGTAGTA 60.610 41.667 0.00 0.00 41.47 1.82
295 296 4.611366 GTGTGCAAAGCAATTTCGTAGTAC 59.389 41.667 0.00 0.00 41.47 2.73
296 297 4.273724 TGTGCAAAGCAATTTCGTAGTACA 59.726 37.500 0.38 0.00 41.47 2.90
301 302 7.546316 TGCAAAGCAATTTCGTAGTACAGTATA 59.454 33.333 0.38 0.00 34.76 1.47
306 307 9.293404 AGCAATTTCGTAGTACAGTATATCCTA 57.707 33.333 0.38 0.00 0.00 2.94
375 378 0.390209 TTTCTGGCGGGCTACGTTAC 60.390 55.000 2.38 0.00 46.52 2.50
398 403 2.403259 TGTGCGTTCGCTATCCATATG 58.597 47.619 17.63 0.00 0.00 1.78
403 408 1.126846 GTTCGCTATCCATATGTGCGC 59.873 52.381 18.26 0.00 45.24 6.09
416 421 3.120385 TGCGCACATGAAGCCGAG 61.120 61.111 5.66 0.00 0.00 4.63
427 432 2.343101 TGAAGCCGAGGTAAAATCGTG 58.657 47.619 0.00 0.00 38.50 4.35
430 435 2.774687 AGCCGAGGTAAAATCGTGTTT 58.225 42.857 0.00 0.00 38.50 2.83
520 537 4.157840 GCTTTCCTAATTCCAACCGTCAAT 59.842 41.667 0.00 0.00 0.00 2.57
611 634 4.820744 GACCGGCCACCCATGCAT 62.821 66.667 0.00 0.00 0.00 3.96
652 675 2.745884 CGCAAAGCCCCATCGTCA 60.746 61.111 0.00 0.00 0.00 4.35
716 743 4.513442 AGTTAGAGCCGCAAATACAATGA 58.487 39.130 0.00 0.00 0.00 2.57
826 862 8.373048 TGATTAATTTTAGCTATACGTGGTGG 57.627 34.615 0.00 0.00 0.00 4.61
828 864 7.542534 TTAATTTTAGCTATACGTGGTGGTG 57.457 36.000 0.00 0.00 0.00 4.17
850 886 1.930567 TCATTAACTAGCCGAACCGC 58.069 50.000 0.00 0.00 0.00 5.68
895 931 1.472026 GCTCTACAAATACCCGCGGAA 60.472 52.381 30.73 15.54 0.00 4.30
943 980 3.667429 GATTCGCAAGCGCACCACC 62.667 63.158 11.47 0.00 38.40 4.61
960 997 0.617249 ACCAGAGGAGAGGAGCCAAG 60.617 60.000 0.00 0.00 0.00 3.61
991 1046 2.042843 GCGAGGAGGAGGAAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
1205 1260 1.196354 GACGTCGTCGAAGAAGGAGAA 59.804 52.381 15.21 0.00 39.69 2.87
1206 1261 1.069364 ACGTCGTCGAAGAAGGAGAAC 60.069 52.381 15.21 0.00 39.69 3.01
1254 1321 4.828296 GAGGCGGAGGACGGGGTA 62.828 72.222 0.00 0.00 44.51 3.69
1433 1500 4.817909 ATCGTCCCCTCCCACCCC 62.818 72.222 0.00 0.00 0.00 4.95
1550 1625 1.197949 GCTCTGTTTTTCCTTCGCTCC 59.802 52.381 0.00 0.00 0.00 4.70
1555 1630 2.104111 TGTTTTTCCTTCGCTCCTCTCA 59.896 45.455 0.00 0.00 0.00 3.27
1615 1690 1.110518 TAGTGAGCACCGTGACACCA 61.111 55.000 18.81 8.62 34.33 4.17
1633 1708 9.016623 GTGACACCATGTAAAAGAAGTTTTAAC 57.983 33.333 0.00 0.00 39.34 2.01
1654 1729 6.686130 AACGAACAGTGTTACTAAATCTCG 57.314 37.500 8.88 7.55 0.00 4.04
1662 1737 4.206609 GTGTTACTAAATCTCGGTCGATGC 59.793 45.833 0.00 0.00 0.00 3.91
1703 1779 5.295292 ACATGGAAATCGTGCTAAATCTCAG 59.705 40.000 0.00 0.00 35.84 3.35
1706 1782 6.042777 TGGAAATCGTGCTAAATCTCAGTAG 58.957 40.000 0.00 0.00 0.00 2.57
1707 1783 5.050702 GGAAATCGTGCTAAATCTCAGTAGC 60.051 44.000 0.00 0.00 42.56 3.58
1708 1784 4.927978 ATCGTGCTAAATCTCAGTAGCT 57.072 40.909 0.00 0.00 42.67 3.32
1709 1785 4.720649 TCGTGCTAAATCTCAGTAGCTT 57.279 40.909 0.00 0.00 42.67 3.74
1710 1786 5.073311 TCGTGCTAAATCTCAGTAGCTTT 57.927 39.130 0.00 0.00 42.67 3.51
1711 1787 4.864806 TCGTGCTAAATCTCAGTAGCTTTG 59.135 41.667 0.00 0.00 42.67 2.77
1712 1788 4.493220 CGTGCTAAATCTCAGTAGCTTTGC 60.493 45.833 0.00 0.00 42.67 3.68
1713 1789 4.633565 GTGCTAAATCTCAGTAGCTTTGCT 59.366 41.667 0.00 0.00 42.67 3.91
1714 1790 5.123027 GTGCTAAATCTCAGTAGCTTTGCTT 59.877 40.000 0.00 0.00 42.67 3.91
1715 1791 5.707298 TGCTAAATCTCAGTAGCTTTGCTTT 59.293 36.000 0.00 0.00 42.67 3.51
1716 1792 6.128172 TGCTAAATCTCAGTAGCTTTGCTTTC 60.128 38.462 0.00 0.00 42.67 2.62
1717 1793 4.935885 AATCTCAGTAGCTTTGCTTTCG 57.064 40.909 0.00 0.00 40.44 3.46
1718 1794 3.386768 TCTCAGTAGCTTTGCTTTCGT 57.613 42.857 0.00 0.00 40.44 3.85
1719 1795 3.318017 TCTCAGTAGCTTTGCTTTCGTC 58.682 45.455 0.00 0.00 40.44 4.20
1720 1796 3.059884 CTCAGTAGCTTTGCTTTCGTCA 58.940 45.455 0.00 0.00 40.44 4.35
1721 1797 2.800544 TCAGTAGCTTTGCTTTCGTCAC 59.199 45.455 0.00 0.00 40.44 3.67
1722 1798 2.802816 CAGTAGCTTTGCTTTCGTCACT 59.197 45.455 0.00 0.00 40.44 3.41
1723 1799 2.802816 AGTAGCTTTGCTTTCGTCACTG 59.197 45.455 0.00 0.00 40.44 3.66
1724 1800 1.668419 AGCTTTGCTTTCGTCACTGT 58.332 45.000 0.00 0.00 33.89 3.55
1725 1801 1.331756 AGCTTTGCTTTCGTCACTGTG 59.668 47.619 0.17 0.17 33.89 3.66
1726 1802 1.330521 GCTTTGCTTTCGTCACTGTGA 59.669 47.619 6.36 6.36 0.00 3.58
1727 1803 2.851008 GCTTTGCTTTCGTCACTGTGAC 60.851 50.000 26.86 26.86 43.65 3.67
1728 1804 2.309528 TTGCTTTCGTCACTGTGACT 57.690 45.000 31.34 0.00 44.85 3.41
1729 1805 1.570813 TGCTTTCGTCACTGTGACTG 58.429 50.000 31.34 25.00 44.85 3.51
1892 1968 1.823295 CCGTCATCGTCCCTCCATT 59.177 57.895 0.00 0.00 35.01 3.16
1927 2003 5.047847 GCACAACTTGTTGTAGTAGACAGA 58.952 41.667 17.26 0.00 39.88 3.41
1952 2028 4.124351 TCGTCGTGCTAAGGCCCG 62.124 66.667 0.00 0.00 40.49 6.13
1957 2033 2.420568 CGTGCTAAGGCCCGGTAGA 61.421 63.158 0.00 0.00 35.79 2.59
1983 2059 1.724582 GCACCAGAACAGCAACCGTT 61.725 55.000 0.00 0.00 0.00 4.44
2085 2161 5.537674 GCAAATCCACCAAAGATAGATCCAT 59.462 40.000 0.00 0.00 0.00 3.41
2204 2280 2.082231 CCGTCTCGTCTTCCTGAGTAA 58.918 52.381 0.00 0.00 33.88 2.24
2246 2322 4.807304 ACTGAAAGAAACGACTAAAAGCGA 59.193 37.500 0.00 0.00 37.43 4.93
2389 2467 4.157120 GGAGGCGGCGGCTAGAAA 62.157 66.667 36.29 0.00 38.98 2.52
2390 2468 2.586357 GAGGCGGCGGCTAGAAAG 60.586 66.667 36.29 0.00 38.98 2.62
2391 2469 3.075005 AGGCGGCGGCTAGAAAGA 61.075 61.111 35.47 0.00 36.44 2.52
2392 2470 2.586357 GGCGGCGGCTAGAAAGAG 60.586 66.667 27.22 0.00 39.81 2.85
2393 2471 2.586357 GCGGCGGCTAGAAAGAGG 60.586 66.667 9.78 0.00 35.83 3.69
2394 2472 3.077519 GCGGCGGCTAGAAAGAGGA 62.078 63.158 9.78 0.00 35.83 3.71
2395 2473 1.066587 CGGCGGCTAGAAAGAGGAG 59.933 63.158 7.61 0.00 0.00 3.69
2396 2474 1.384989 CGGCGGCTAGAAAGAGGAGA 61.385 60.000 7.61 0.00 0.00 3.71
2397 2475 0.103390 GGCGGCTAGAAAGAGGAGAC 59.897 60.000 0.00 0.00 0.00 3.36
2398 2476 0.818296 GCGGCTAGAAAGAGGAGACA 59.182 55.000 0.00 0.00 0.00 3.41
2399 2477 1.470112 GCGGCTAGAAAGAGGAGACAC 60.470 57.143 0.00 0.00 0.00 3.67
2400 2478 1.135333 CGGCTAGAAAGAGGAGACACC 59.865 57.143 0.00 0.00 39.35 4.16
2401 2479 2.180276 GGCTAGAAAGAGGAGACACCA 58.820 52.381 0.00 0.00 42.04 4.17
2402 2480 2.093921 GGCTAGAAAGAGGAGACACCAC 60.094 54.545 0.00 0.00 42.04 4.16
2403 2481 2.093921 GCTAGAAAGAGGAGACACCACC 60.094 54.545 0.00 0.00 42.04 4.61
2404 2482 1.353091 AGAAAGAGGAGACACCACCC 58.647 55.000 0.00 0.00 42.04 4.61
2405 2483 0.037232 GAAAGAGGAGACACCACCCG 60.037 60.000 0.00 0.00 42.04 5.28
2406 2484 0.471211 AAAGAGGAGACACCACCCGA 60.471 55.000 0.00 0.00 42.04 5.14
2407 2485 1.186267 AAGAGGAGACACCACCCGAC 61.186 60.000 0.00 0.00 42.04 4.79
2408 2486 1.906824 GAGGAGACACCACCCGACA 60.907 63.158 0.00 0.00 42.04 4.35
2409 2487 1.229209 AGGAGACACCACCCGACAT 60.229 57.895 0.00 0.00 42.04 3.06
2410 2488 0.040646 AGGAGACACCACCCGACATA 59.959 55.000 0.00 0.00 42.04 2.29
2411 2489 1.120530 GGAGACACCACCCGACATAT 58.879 55.000 0.00 0.00 38.79 1.78
2412 2490 1.068741 GGAGACACCACCCGACATATC 59.931 57.143 0.00 0.00 38.79 1.63
2413 2491 1.754803 GAGACACCACCCGACATATCA 59.245 52.381 0.00 0.00 0.00 2.15
2414 2492 1.757118 AGACACCACCCGACATATCAG 59.243 52.381 0.00 0.00 0.00 2.90
2415 2493 1.480954 GACACCACCCGACATATCAGT 59.519 52.381 0.00 0.00 0.00 3.41
2416 2494 1.207089 ACACCACCCGACATATCAGTG 59.793 52.381 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.170062 CCATGTCGCGCTTGCAGG 62.170 66.667 5.56 3.01 39.07 4.85
6 7 3.092192 CTCCATGTCGCGCTTGCAG 62.092 63.158 5.56 0.00 39.07 4.41
7 8 3.120385 CTCCATGTCGCGCTTGCA 61.120 61.111 5.56 1.32 39.07 4.08
8 9 4.527157 GCTCCATGTCGCGCTTGC 62.527 66.667 5.56 0.00 0.00 4.01
9 10 1.985447 ATTGCTCCATGTCGCGCTTG 61.985 55.000 5.56 5.35 0.00 4.01
10 11 1.746615 ATTGCTCCATGTCGCGCTT 60.747 52.632 5.56 0.00 0.00 4.68
11 12 2.124983 ATTGCTCCATGTCGCGCT 60.125 55.556 5.56 0.00 0.00 5.92
12 13 2.023741 CATTGCTCCATGTCGCGC 59.976 61.111 0.00 0.00 0.00 6.86
13 14 2.711311 CCATTGCTCCATGTCGCG 59.289 61.111 0.00 0.00 0.00 5.87
14 15 2.410469 GCCATTGCTCCATGTCGC 59.590 61.111 0.00 0.00 33.53 5.19
15 16 1.368345 TTCGCCATTGCTCCATGTCG 61.368 55.000 0.00 0.00 34.43 4.35
16 17 1.027357 ATTCGCCATTGCTCCATGTC 58.973 50.000 0.00 0.00 34.43 3.06
17 18 0.742505 CATTCGCCATTGCTCCATGT 59.257 50.000 0.00 0.00 34.43 3.21
18 19 0.031585 CCATTCGCCATTGCTCCATG 59.968 55.000 0.00 0.00 34.43 3.66
19 20 1.741327 GCCATTCGCCATTGCTCCAT 61.741 55.000 0.00 0.00 34.43 3.41
20 21 2.417257 GCCATTCGCCATTGCTCCA 61.417 57.895 0.00 0.00 34.43 3.86
21 22 2.414594 GCCATTCGCCATTGCTCC 59.585 61.111 0.00 0.00 34.43 4.70
38 39 3.762247 CAATGCACTTGGCCCCGG 61.762 66.667 0.00 0.00 43.89 5.73
39 40 2.676121 TCAATGCACTTGGCCCCG 60.676 61.111 0.00 0.00 43.89 5.73
40 41 1.187567 AACTCAATGCACTTGGCCCC 61.188 55.000 0.00 0.00 43.89 5.80
41 42 1.202348 GTAACTCAATGCACTTGGCCC 59.798 52.381 0.00 0.00 43.89 5.80
42 43 1.202348 GGTAACTCAATGCACTTGGCC 59.798 52.381 0.00 0.00 43.89 5.36
43 44 1.202348 GGGTAACTCAATGCACTTGGC 59.798 52.381 0.00 0.00 45.13 4.52
44 45 2.795329 AGGGTAACTCAATGCACTTGG 58.205 47.619 0.00 0.00 35.43 3.61
45 46 4.549458 CAAAGGGTAACTCAATGCACTTG 58.451 43.478 0.00 0.00 28.56 3.16
46 47 3.573967 CCAAAGGGTAACTCAATGCACTT 59.426 43.478 0.00 0.00 29.20 3.16
47 48 3.157087 CCAAAGGGTAACTCAATGCACT 58.843 45.455 0.00 0.00 0.00 4.40
48 49 2.231235 CCCAAAGGGTAACTCAATGCAC 59.769 50.000 0.00 0.00 38.25 4.57
49 50 2.524306 CCCAAAGGGTAACTCAATGCA 58.476 47.619 0.00 0.00 38.25 3.96
62 63 2.554370 TCACGTTACTTCCCCAAAGG 57.446 50.000 0.00 0.00 39.47 3.11
63 64 4.904253 TTTTCACGTTACTTCCCCAAAG 57.096 40.909 0.00 0.00 41.08 2.77
64 65 7.309316 GGAATATTTTCACGTTACTTCCCCAAA 60.309 37.037 0.00 0.00 33.23 3.28
65 66 6.151480 GGAATATTTTCACGTTACTTCCCCAA 59.849 38.462 0.00 0.00 33.23 4.12
66 67 5.648960 GGAATATTTTCACGTTACTTCCCCA 59.351 40.000 0.00 0.00 33.23 4.96
67 68 5.648960 TGGAATATTTTCACGTTACTTCCCC 59.351 40.000 0.00 0.00 33.23 4.81
68 69 6.746745 TGGAATATTTTCACGTTACTTCCC 57.253 37.500 0.00 0.00 33.23 3.97
69 70 8.557029 CCTATGGAATATTTTCACGTTACTTCC 58.443 37.037 0.00 0.00 33.23 3.46
70 71 9.321562 TCCTATGGAATATTTTCACGTTACTTC 57.678 33.333 0.00 0.00 33.23 3.01
71 72 9.106070 GTCCTATGGAATATTTTCACGTTACTT 57.894 33.333 0.00 0.00 31.38 2.24
72 73 8.483758 AGTCCTATGGAATATTTTCACGTTACT 58.516 33.333 0.00 0.00 31.38 2.24
73 74 8.658499 AGTCCTATGGAATATTTTCACGTTAC 57.342 34.615 0.00 0.00 31.38 2.50
75 76 9.326413 CTAAGTCCTATGGAATATTTTCACGTT 57.674 33.333 0.00 0.00 31.38 3.99
76 77 7.931948 CCTAAGTCCTATGGAATATTTTCACGT 59.068 37.037 0.00 0.00 31.38 4.49
77 78 7.095187 GCCTAAGTCCTATGGAATATTTTCACG 60.095 40.741 0.00 0.00 31.38 4.35
78 79 7.175119 GGCCTAAGTCCTATGGAATATTTTCAC 59.825 40.741 0.00 0.00 31.38 3.18
79 80 7.231467 GGCCTAAGTCCTATGGAATATTTTCA 58.769 38.462 0.00 0.00 31.38 2.69
80 81 6.659668 GGGCCTAAGTCCTATGGAATATTTTC 59.340 42.308 0.84 0.00 33.65 2.29
81 82 6.104094 TGGGCCTAAGTCCTATGGAATATTTT 59.896 38.462 4.53 0.00 39.18 1.82
82 83 5.615261 TGGGCCTAAGTCCTATGGAATATTT 59.385 40.000 4.53 0.00 39.18 1.40
83 84 5.170198 TGGGCCTAAGTCCTATGGAATATT 58.830 41.667 4.53 0.00 39.18 1.28
84 85 4.774779 TGGGCCTAAGTCCTATGGAATAT 58.225 43.478 4.53 0.00 39.18 1.28
85 86 4.168101 CTGGGCCTAAGTCCTATGGAATA 58.832 47.826 4.53 0.00 39.18 1.75
86 87 2.982488 CTGGGCCTAAGTCCTATGGAAT 59.018 50.000 4.53 0.00 39.18 3.01
87 88 2.408565 CTGGGCCTAAGTCCTATGGAA 58.591 52.381 4.53 0.00 39.18 3.53
88 89 2.040144 GCTGGGCCTAAGTCCTATGGA 61.040 57.143 4.53 0.00 39.18 3.41
89 90 0.398318 GCTGGGCCTAAGTCCTATGG 59.602 60.000 4.53 0.00 39.18 2.74
90 91 1.428869 AGCTGGGCCTAAGTCCTATG 58.571 55.000 4.53 0.00 39.18 2.23
91 92 2.050918 GAAGCTGGGCCTAAGTCCTAT 58.949 52.381 4.53 0.00 39.18 2.57
92 93 1.273609 TGAAGCTGGGCCTAAGTCCTA 60.274 52.381 4.53 0.00 39.18 2.94
93 94 0.547712 TGAAGCTGGGCCTAAGTCCT 60.548 55.000 4.53 0.00 39.18 3.85
94 95 0.107459 CTGAAGCTGGGCCTAAGTCC 60.107 60.000 4.53 0.00 38.73 3.85
95 96 0.107459 CCTGAAGCTGGGCCTAAGTC 60.107 60.000 4.53 0.00 0.00 3.01
96 97 1.566298 CCCTGAAGCTGGGCCTAAGT 61.566 60.000 4.53 0.00 35.90 2.24
97 98 1.225704 CCCTGAAGCTGGGCCTAAG 59.774 63.158 4.53 1.52 35.90 2.18
98 99 2.308722 CCCCTGAAGCTGGGCCTAA 61.309 63.158 4.53 0.00 40.67 2.69
99 100 2.692368 CCCCTGAAGCTGGGCCTA 60.692 66.667 4.53 0.00 40.67 3.93
107 108 0.394899 ATTACAGCTGCCCCTGAAGC 60.395 55.000 15.27 0.00 39.82 3.86
108 109 2.134789 AATTACAGCTGCCCCTGAAG 57.865 50.000 15.27 0.00 36.67 3.02
109 110 2.603075 AAATTACAGCTGCCCCTGAA 57.397 45.000 15.27 0.00 36.67 3.02
110 111 2.603075 AAAATTACAGCTGCCCCTGA 57.397 45.000 15.27 0.00 36.67 3.86
111 112 2.094026 GGAAAAATTACAGCTGCCCCTG 60.094 50.000 15.27 0.00 38.78 4.45
112 113 2.179427 GGAAAAATTACAGCTGCCCCT 58.821 47.619 15.27 0.00 0.00 4.79
113 114 1.899142 TGGAAAAATTACAGCTGCCCC 59.101 47.619 15.27 4.15 0.00 5.80
114 115 3.448660 AGATGGAAAAATTACAGCTGCCC 59.551 43.478 15.27 3.09 28.54 5.36
115 116 4.725790 AGATGGAAAAATTACAGCTGCC 57.274 40.909 15.27 4.59 28.54 4.85
116 117 5.958955 AGAAGATGGAAAAATTACAGCTGC 58.041 37.500 15.27 0.00 30.39 5.25
117 118 7.596494 TCAAGAAGATGGAAAAATTACAGCTG 58.404 34.615 13.48 13.48 30.39 4.24
118 119 7.765695 TCAAGAAGATGGAAAAATTACAGCT 57.234 32.000 0.00 0.00 31.32 4.24
119 120 8.246180 TGATCAAGAAGATGGAAAAATTACAGC 58.754 33.333 0.00 0.00 37.00 4.40
120 121 9.565213 GTGATCAAGAAGATGGAAAAATTACAG 57.435 33.333 0.00 0.00 37.00 2.74
121 122 9.300681 AGTGATCAAGAAGATGGAAAAATTACA 57.699 29.630 0.00 0.00 37.00 2.41
124 125 8.863086 TCAAGTGATCAAGAAGATGGAAAAATT 58.137 29.630 0.00 0.00 37.00 1.82
125 126 8.413309 TCAAGTGATCAAGAAGATGGAAAAAT 57.587 30.769 0.00 0.00 37.00 1.82
126 127 7.822161 TCAAGTGATCAAGAAGATGGAAAAA 57.178 32.000 0.00 0.00 37.00 1.94
142 143 5.249393 AGAGTACAAAGGGTGATCAAGTGAT 59.751 40.000 0.00 0.00 37.51 3.06
143 144 4.593206 AGAGTACAAAGGGTGATCAAGTGA 59.407 41.667 0.00 0.00 0.00 3.41
144 145 4.899502 AGAGTACAAAGGGTGATCAAGTG 58.100 43.478 0.00 0.00 0.00 3.16
145 146 4.841246 AGAGAGTACAAAGGGTGATCAAGT 59.159 41.667 0.00 0.00 0.00 3.16
146 147 5.186797 AGAGAGAGTACAAAGGGTGATCAAG 59.813 44.000 0.00 0.00 0.00 3.02
147 148 5.087323 AGAGAGAGTACAAAGGGTGATCAA 58.913 41.667 0.00 0.00 0.00 2.57
148 149 4.678256 AGAGAGAGTACAAAGGGTGATCA 58.322 43.478 0.00 0.00 0.00 2.92
149 150 5.420739 AGAAGAGAGAGTACAAAGGGTGATC 59.579 44.000 0.00 0.00 0.00 2.92
150 151 5.186797 CAGAAGAGAGAGTACAAAGGGTGAT 59.813 44.000 0.00 0.00 0.00 3.06
151 152 4.524714 CAGAAGAGAGAGTACAAAGGGTGA 59.475 45.833 0.00 0.00 0.00 4.02
152 153 4.815269 CAGAAGAGAGAGTACAAAGGGTG 58.185 47.826 0.00 0.00 0.00 4.61
153 154 3.259625 GCAGAAGAGAGAGTACAAAGGGT 59.740 47.826 0.00 0.00 0.00 4.34
154 155 3.513515 AGCAGAAGAGAGAGTACAAAGGG 59.486 47.826 0.00 0.00 0.00 3.95
155 156 4.219507 TGAGCAGAAGAGAGAGTACAAAGG 59.780 45.833 0.00 0.00 0.00 3.11
156 157 5.384063 TGAGCAGAAGAGAGAGTACAAAG 57.616 43.478 0.00 0.00 0.00 2.77
157 158 5.791336 TTGAGCAGAAGAGAGAGTACAAA 57.209 39.130 0.00 0.00 0.00 2.83
158 159 5.791336 TTTGAGCAGAAGAGAGAGTACAA 57.209 39.130 0.00 0.00 0.00 2.41
159 160 5.478332 TGATTTGAGCAGAAGAGAGAGTACA 59.522 40.000 0.00 0.00 0.00 2.90
160 161 5.960113 TGATTTGAGCAGAAGAGAGAGTAC 58.040 41.667 0.00 0.00 0.00 2.73
161 162 6.596309 TTGATTTGAGCAGAAGAGAGAGTA 57.404 37.500 0.00 0.00 0.00 2.59
162 163 5.480642 TTGATTTGAGCAGAAGAGAGAGT 57.519 39.130 0.00 0.00 0.00 3.24
163 164 6.107343 TCATTGATTTGAGCAGAAGAGAGAG 58.893 40.000 0.00 0.00 0.00 3.20
164 165 6.046290 TCATTGATTTGAGCAGAAGAGAGA 57.954 37.500 0.00 0.00 0.00 3.10
165 166 6.738832 TTCATTGATTTGAGCAGAAGAGAG 57.261 37.500 0.00 0.00 0.00 3.20
166 167 7.176165 ACATTTCATTGATTTGAGCAGAAGAGA 59.824 33.333 4.01 0.00 0.00 3.10
167 168 7.313646 ACATTTCATTGATTTGAGCAGAAGAG 58.686 34.615 4.01 0.00 0.00 2.85
168 169 7.040271 TGACATTTCATTGATTTGAGCAGAAGA 60.040 33.333 4.01 0.00 0.00 2.87
169 170 7.088272 TGACATTTCATTGATTTGAGCAGAAG 58.912 34.615 4.01 0.00 0.00 2.85
170 171 6.983984 TGACATTTCATTGATTTGAGCAGAA 58.016 32.000 4.01 0.00 0.00 3.02
171 172 6.578163 TGACATTTCATTGATTTGAGCAGA 57.422 33.333 4.01 0.00 0.00 4.26
172 173 5.288712 GCTGACATTTCATTGATTTGAGCAG 59.711 40.000 0.00 9.64 0.00 4.24
173 174 5.165676 GCTGACATTTCATTGATTTGAGCA 58.834 37.500 0.00 2.10 0.00 4.26
174 175 5.165676 TGCTGACATTTCATTGATTTGAGC 58.834 37.500 4.01 0.00 0.00 4.26
175 176 7.674008 GCAATGCTGACATTTCATTGATTTGAG 60.674 37.037 20.26 2.89 44.21 3.02
176 177 6.091577 GCAATGCTGACATTTCATTGATTTGA 59.908 34.615 20.26 0.00 44.21 2.69
177 178 6.092122 AGCAATGCTGACATTTCATTGATTTG 59.908 34.615 7.07 0.00 44.21 2.32
178 179 6.170506 AGCAATGCTGACATTTCATTGATTT 58.829 32.000 7.07 8.85 44.21 2.17
179 180 5.730550 AGCAATGCTGACATTTCATTGATT 58.269 33.333 7.07 10.44 44.21 2.57
180 181 5.339008 AGCAATGCTGACATTTCATTGAT 57.661 34.783 7.07 14.94 44.21 2.57
181 182 4.794278 AGCAATGCTGACATTTCATTGA 57.206 36.364 7.07 0.00 44.21 2.57
218 219 3.395639 CTGGACAACATGCTGCATTTTT 58.604 40.909 13.38 6.41 0.00 1.94
219 220 2.868839 GCTGGACAACATGCTGCATTTT 60.869 45.455 13.38 10.51 42.26 1.82
220 221 1.337447 GCTGGACAACATGCTGCATTT 60.337 47.619 13.38 3.45 42.26 2.32
221 222 0.245539 GCTGGACAACATGCTGCATT 59.754 50.000 13.38 0.00 42.26 3.56
222 223 1.888018 GCTGGACAACATGCTGCAT 59.112 52.632 9.81 9.81 42.26 3.96
223 224 2.619165 CGCTGGACAACATGCTGCA 61.619 57.895 4.13 4.13 42.74 4.41
224 225 1.855213 TTCGCTGGACAACATGCTGC 61.855 55.000 0.00 0.00 39.77 5.25
225 226 0.167470 CTTCGCTGGACAACATGCTG 59.833 55.000 0.00 0.00 0.00 4.41
226 227 0.035317 TCTTCGCTGGACAACATGCT 59.965 50.000 0.00 0.00 0.00 3.79
227 228 0.166814 GTCTTCGCTGGACAACATGC 59.833 55.000 0.00 0.00 34.23 4.06
228 229 1.195448 GTGTCTTCGCTGGACAACATG 59.805 52.381 6.53 0.00 43.90 3.21
229 230 1.512926 GTGTCTTCGCTGGACAACAT 58.487 50.000 6.53 0.00 43.90 2.71
230 231 0.531974 GGTGTCTTCGCTGGACAACA 60.532 55.000 12.82 0.00 46.88 3.33
231 232 2.235546 GGTGTCTTCGCTGGACAAC 58.764 57.895 6.53 5.75 43.90 3.32
232 233 0.033504 GAGGTGTCTTCGCTGGACAA 59.966 55.000 6.53 0.00 43.90 3.18
233 234 1.112916 TGAGGTGTCTTCGCTGGACA 61.113 55.000 0.00 0.00 40.78 4.02
234 235 0.389166 CTGAGGTGTCTTCGCTGGAC 60.389 60.000 0.00 0.00 0.00 4.02
235 236 0.539669 TCTGAGGTGTCTTCGCTGGA 60.540 55.000 0.00 0.00 0.00 3.86
236 237 0.534412 ATCTGAGGTGTCTTCGCTGG 59.466 55.000 0.00 0.00 0.00 4.85
237 238 1.796982 CGATCTGAGGTGTCTTCGCTG 60.797 57.143 0.00 0.00 0.00 5.18
238 239 0.453793 CGATCTGAGGTGTCTTCGCT 59.546 55.000 0.00 0.00 0.00 4.93
239 240 0.171455 ACGATCTGAGGTGTCTTCGC 59.829 55.000 0.00 0.00 0.00 4.70
240 241 3.065510 ACATACGATCTGAGGTGTCTTCG 59.934 47.826 0.00 0.00 0.00 3.79
241 242 4.640789 ACATACGATCTGAGGTGTCTTC 57.359 45.455 0.00 0.00 0.00 2.87
242 243 4.948004 TGTACATACGATCTGAGGTGTCTT 59.052 41.667 0.00 0.00 0.00 3.01
243 244 4.524053 TGTACATACGATCTGAGGTGTCT 58.476 43.478 0.00 0.00 0.00 3.41
244 245 4.895224 TGTACATACGATCTGAGGTGTC 57.105 45.455 0.00 0.00 0.00 3.67
245 246 5.417894 TCTTTGTACATACGATCTGAGGTGT 59.582 40.000 0.00 0.00 0.00 4.16
246 247 5.891451 TCTTTGTACATACGATCTGAGGTG 58.109 41.667 0.00 0.00 0.00 4.00
247 248 6.513556 CGATCTTTGTACATACGATCTGAGGT 60.514 42.308 19.00 0.00 0.00 3.85
248 249 5.853810 CGATCTTTGTACATACGATCTGAGG 59.146 44.000 19.00 7.38 0.00 3.86
249 250 6.358294 CACGATCTTTGTACATACGATCTGAG 59.642 42.308 19.00 11.28 0.00 3.35
250 251 6.183360 ACACGATCTTTGTACATACGATCTGA 60.183 38.462 19.00 2.20 0.00 3.27
251 252 5.971792 ACACGATCTTTGTACATACGATCTG 59.028 40.000 19.00 17.55 0.00 2.90
252 253 5.971792 CACACGATCTTTGTACATACGATCT 59.028 40.000 19.00 9.63 0.00 2.75
253 254 5.331607 GCACACGATCTTTGTACATACGATC 60.332 44.000 14.66 14.66 0.00 3.69
254 255 4.503007 GCACACGATCTTTGTACATACGAT 59.497 41.667 0.00 0.00 0.00 3.73
255 256 3.855379 GCACACGATCTTTGTACATACGA 59.145 43.478 0.00 0.00 0.00 3.43
256 257 3.610677 TGCACACGATCTTTGTACATACG 59.389 43.478 0.00 1.53 0.00 3.06
257 258 5.524511 TTGCACACGATCTTTGTACATAC 57.475 39.130 0.00 0.00 0.00 2.39
258 259 5.390461 GCTTTGCACACGATCTTTGTACATA 60.390 40.000 0.00 0.00 0.00 2.29
259 260 4.613622 GCTTTGCACACGATCTTTGTACAT 60.614 41.667 0.00 0.00 0.00 2.29
260 261 3.303725 GCTTTGCACACGATCTTTGTACA 60.304 43.478 0.00 0.00 0.00 2.90
261 262 3.226347 GCTTTGCACACGATCTTTGTAC 58.774 45.455 0.00 0.00 0.00 2.90
262 263 2.875317 TGCTTTGCACACGATCTTTGTA 59.125 40.909 0.00 0.00 31.71 2.41
263 264 1.675483 TGCTTTGCACACGATCTTTGT 59.325 42.857 0.00 0.00 31.71 2.83
264 265 2.404265 TGCTTTGCACACGATCTTTG 57.596 45.000 0.00 0.00 31.71 2.77
265 266 3.648339 ATTGCTTTGCACACGATCTTT 57.352 38.095 0.00 0.00 38.71 2.52
266 267 3.648339 AATTGCTTTGCACACGATCTT 57.352 38.095 0.00 0.00 38.71 2.40
267 268 3.568538 GAAATTGCTTTGCACACGATCT 58.431 40.909 0.00 0.00 38.71 2.75
268 269 2.339400 CGAAATTGCTTTGCACACGATC 59.661 45.455 0.00 0.00 38.71 3.69
269 270 2.287547 ACGAAATTGCTTTGCACACGAT 60.288 40.909 0.00 0.00 38.71 3.73
270 271 1.064803 ACGAAATTGCTTTGCACACGA 59.935 42.857 0.00 0.00 38.71 4.35
271 272 1.476074 ACGAAATTGCTTTGCACACG 58.524 45.000 0.00 0.00 38.71 4.49
272 273 3.628017 ACTACGAAATTGCTTTGCACAC 58.372 40.909 0.00 0.00 38.71 3.82
273 274 3.980646 ACTACGAAATTGCTTTGCACA 57.019 38.095 0.00 0.00 38.71 4.57
274 275 4.778904 TGTACTACGAAATTGCTTTGCAC 58.221 39.130 0.00 0.00 38.71 4.57
275 276 4.513692 ACTGTACTACGAAATTGCTTTGCA 59.486 37.500 0.00 0.00 36.47 4.08
276 277 5.030874 ACTGTACTACGAAATTGCTTTGC 57.969 39.130 0.00 0.00 0.00 3.68
278 279 9.257651 GGATATACTGTACTACGAAATTGCTTT 57.742 33.333 0.00 0.00 0.00 3.51
279 280 8.639761 AGGATATACTGTACTACGAAATTGCTT 58.360 33.333 0.00 0.00 0.00 3.91
280 281 8.179509 AGGATATACTGTACTACGAAATTGCT 57.820 34.615 0.00 0.00 0.00 3.91
281 282 9.557338 CTAGGATATACTGTACTACGAAATTGC 57.443 37.037 0.00 0.00 0.00 3.56
338 339 8.379902 CGCCAGAAATTTCCAAATTTGTTATAC 58.620 33.333 16.73 2.96 45.70 1.47
339 340 7.547370 CCGCCAGAAATTTCCAAATTTGTTATA 59.453 33.333 16.73 1.12 45.70 0.98
340 341 6.371271 CCGCCAGAAATTTCCAAATTTGTTAT 59.629 34.615 16.73 4.58 45.70 1.89
342 343 4.514816 CCGCCAGAAATTTCCAAATTTGTT 59.485 37.500 16.73 4.19 45.70 2.83
343 344 4.064388 CCGCCAGAAATTTCCAAATTTGT 58.936 39.130 16.73 7.82 45.70 2.83
344 345 3.436359 CCCGCCAGAAATTTCCAAATTTG 59.564 43.478 14.61 11.40 45.70 2.32
346 347 2.615240 GCCCGCCAGAAATTTCCAAATT 60.615 45.455 14.61 0.00 40.15 1.82
348 349 0.320050 GCCCGCCAGAAATTTCCAAA 59.680 50.000 14.61 0.00 0.00 3.28
349 350 0.541764 AGCCCGCCAGAAATTTCCAA 60.542 50.000 14.61 0.00 0.00 3.53
351 352 0.738975 GTAGCCCGCCAGAAATTTCC 59.261 55.000 14.61 0.00 0.00 3.13
362 365 1.079612 ACAAGGTAACGTAGCCCGC 60.080 57.895 4.88 0.00 46.39 6.13
375 378 0.739462 TGGATAGCGAACGCACAAGG 60.739 55.000 20.66 0.00 44.88 3.61
398 403 3.372676 CTCGGCTTCATGTGCGCAC 62.373 63.158 33.11 33.11 0.00 5.34
403 408 3.242413 CGATTTTACCTCGGCTTCATGTG 60.242 47.826 0.00 0.00 32.58 3.21
407 412 2.289195 ACACGATTTTACCTCGGCTTCA 60.289 45.455 0.00 0.00 40.37 3.02
416 421 3.907894 TGGCTGAAACACGATTTTACC 57.092 42.857 0.00 0.00 0.00 2.85
427 432 5.184671 AGAATCAAAAGGAGATGGCTGAAAC 59.815 40.000 0.00 0.00 0.00 2.78
430 435 4.581309 AGAATCAAAAGGAGATGGCTGA 57.419 40.909 0.00 0.00 0.00 4.26
493 510 3.377172 CGGTTGGAATTAGGAAAGCGATT 59.623 43.478 0.00 0.00 43.96 3.34
520 537 1.134551 GTGGCTTTGCTGGTTTGGAAA 60.135 47.619 0.00 0.00 0.00 3.13
580 599 2.409055 CGGTCGGATGGGTCGTACA 61.409 63.158 0.00 0.00 0.00 2.90
610 633 4.581824 GTGGCAGAATTACATGTCCATCAT 59.418 41.667 0.00 0.00 37.22 2.45
611 634 3.947196 GTGGCAGAATTACATGTCCATCA 59.053 43.478 0.00 0.00 0.00 3.07
652 675 0.110486 GGGCGTATTGATGGGGTGAT 59.890 55.000 0.00 0.00 0.00 3.06
698 721 2.939103 GTCTCATTGTATTTGCGGCTCT 59.061 45.455 0.00 0.00 0.00 4.09
699 722 2.032178 GGTCTCATTGTATTTGCGGCTC 59.968 50.000 0.00 0.00 0.00 4.70
716 743 4.822896 AGCTCTAATTAAGATCGTCGGTCT 59.177 41.667 1.05 1.05 32.41 3.85
810 846 2.459644 ACCACCACCACGTATAGCTAA 58.540 47.619 0.00 0.00 0.00 3.09
811 847 2.148446 ACCACCACCACGTATAGCTA 57.852 50.000 0.00 0.00 0.00 3.32
812 848 1.206371 GAACCACCACCACGTATAGCT 59.794 52.381 0.00 0.00 0.00 3.32
813 849 1.066716 TGAACCACCACCACGTATAGC 60.067 52.381 0.00 0.00 0.00 2.97
814 850 3.536956 ATGAACCACCACCACGTATAG 57.463 47.619 0.00 0.00 0.00 1.31
815 851 3.985019 AATGAACCACCACCACGTATA 57.015 42.857 0.00 0.00 0.00 1.47
816 852 2.871096 AATGAACCACCACCACGTAT 57.129 45.000 0.00 0.00 0.00 3.06
825 861 3.255969 TCGGCTAGTTAATGAACCACC 57.744 47.619 0.00 0.00 36.08 4.61
826 862 4.595198 GTTCGGCTAGTTAATGAACCAC 57.405 45.455 0.00 0.00 36.08 4.16
943 980 1.970352 GCCTTGGCTCCTCTCCTCTG 61.970 65.000 4.11 0.00 0.00 3.35
991 1046 4.735132 CACGCCCATGGTCGACGT 62.735 66.667 23.95 16.95 37.47 4.34
1186 1241 1.069364 GTTCTCCTTCTTCGACGACGT 60.069 52.381 0.00 0.00 40.69 4.34
1245 1312 1.408453 CCTTCCTCCATACCCCGTCC 61.408 65.000 0.00 0.00 0.00 4.79
1254 1321 4.166539 CCATGAGTATCTCCTTCCTCCAT 58.833 47.826 0.00 0.00 34.92 3.41
1442 1509 3.922893 GCGAGCTGCTGCGATCAC 61.923 66.667 20.23 0.00 45.42 3.06
1462 1533 2.464459 GGATCTTGGCCAAGTCGCG 61.464 63.158 37.97 19.02 39.38 5.87
1555 1630 3.971245 AAAGCAGAGGTTTCTCGAGAT 57.029 42.857 17.44 0.00 44.47 2.75
1615 1690 9.498307 CACTGTTCGTTAAAACTTCTTTTACAT 57.502 29.630 0.00 0.00 32.59 2.29
1633 1708 5.159209 ACCGAGATTTAGTAACACTGTTCG 58.841 41.667 0.00 0.00 0.00 3.95
1654 1729 9.672086 GTAAGATCTCATTATATAGCATCGACC 57.328 37.037 0.00 0.00 0.00 4.79
1703 1779 2.544267 ACAGTGACGAAAGCAAAGCTAC 59.456 45.455 0.00 0.00 38.25 3.58
1706 1782 1.330521 TCACAGTGACGAAAGCAAAGC 59.669 47.619 0.00 0.00 0.00 3.51
1707 1783 2.974165 GTCACAGTGACGAAAGCAAAG 58.026 47.619 17.96 0.00 37.67 2.77
1771 1847 6.717997 TCTGGTATTCGTTCTACTGCCATATA 59.282 38.462 0.00 0.00 0.00 0.86
1772 1848 5.538813 TCTGGTATTCGTTCTACTGCCATAT 59.461 40.000 0.00 0.00 0.00 1.78
1773 1849 4.891168 TCTGGTATTCGTTCTACTGCCATA 59.109 41.667 0.00 0.00 0.00 2.74
1811 1887 2.091499 AGGTGGTCTACGGATGTGGATA 60.091 50.000 0.00 0.00 37.94 2.59
1817 1893 0.311165 CGCTAGGTGGTCTACGGATG 59.689 60.000 0.00 0.00 0.00 3.51
1883 1959 1.688311 CCGACTCTGGTAATGGAGGGA 60.688 57.143 0.00 0.00 34.22 4.20
1892 1968 0.830444 AGTTGTGCCCGACTCTGGTA 60.830 55.000 0.00 0.00 28.47 3.25
1927 2003 1.518056 TTAGCACGACGACTTCCCGT 61.518 55.000 0.00 0.00 46.43 5.28
1952 2028 1.741770 CTGGTGCGCTGGTTCTACC 60.742 63.158 9.73 6.39 39.22 3.18
1957 2033 1.893808 CTGTTCTGGTGCGCTGGTT 60.894 57.895 9.73 0.00 0.00 3.67
1983 2059 4.794278 TCTACGTTATTCTTCACCTGCA 57.206 40.909 0.00 0.00 0.00 4.41
1988 2064 7.481642 TCCTTCTGATCTACGTTATTCTTCAC 58.518 38.462 0.00 0.00 0.00 3.18
2085 2161 0.387929 GTGTGGAGGTGTGTCTTCGA 59.612 55.000 0.00 0.00 0.00 3.71
2160 2236 2.648059 CGGCTCCCTGAAGATGAAATT 58.352 47.619 0.00 0.00 0.00 1.82
2204 2280 3.632145 CAGTTTTGCTAGGGTTTGTGTCT 59.368 43.478 0.00 0.00 0.00 3.41
2361 2438 2.765807 CGCCTCCACCTCCTCCAT 60.766 66.667 0.00 0.00 0.00 3.41
2389 2467 1.606889 GTCGGGTGGTGTCTCCTCT 60.607 63.158 0.00 0.00 37.07 3.69
2390 2468 1.258445 ATGTCGGGTGGTGTCTCCTC 61.258 60.000 0.00 0.00 37.07 3.71
2391 2469 0.040646 TATGTCGGGTGGTGTCTCCT 59.959 55.000 0.00 0.00 37.07 3.69
2392 2470 1.068741 GATATGTCGGGTGGTGTCTCC 59.931 57.143 0.00 0.00 0.00 3.71
2393 2471 1.754803 TGATATGTCGGGTGGTGTCTC 59.245 52.381 0.00 0.00 0.00 3.36
2394 2472 1.757118 CTGATATGTCGGGTGGTGTCT 59.243 52.381 0.00 0.00 0.00 3.41
2395 2473 1.480954 ACTGATATGTCGGGTGGTGTC 59.519 52.381 3.11 0.00 34.90 3.67
2396 2474 1.207089 CACTGATATGTCGGGTGGTGT 59.793 52.381 3.11 0.00 34.90 4.16
2397 2475 1.939974 CACTGATATGTCGGGTGGTG 58.060 55.000 3.11 0.00 34.90 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.