Multiple sequence alignment - TraesCS6B01G302400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G302400 chr6B 100.000 3647 0 0 1 3647 542222567 542226213 0.000000e+00 6735.0
1 TraesCS6B01G302400 chr6D 91.089 3030 134 60 709 3647 360680484 360683468 0.000000e+00 3975.0
2 TraesCS6B01G302400 chr6D 88.184 694 53 10 1 693 360679737 360680402 0.000000e+00 800.0
3 TraesCS6B01G302400 chr6A 91.504 1589 70 33 709 2264 501791458 501793014 0.000000e+00 2126.0
4 TraesCS6B01G302400 chr6A 93.101 1348 52 23 2331 3647 501793104 501794441 0.000000e+00 1936.0
5 TraesCS6B01G302400 chr6A 86.127 692 56 18 1 690 501789018 501789671 0.000000e+00 710.0
6 TraesCS6B01G302400 chr5D 84.259 1080 106 30 1209 2268 458776973 458778008 0.000000e+00 994.0
7 TraesCS6B01G302400 chr5D 81.349 504 48 25 2331 2807 458778034 458778518 5.750000e-98 368.0
8 TraesCS6B01G302400 chr5D 93.333 45 2 1 998 1041 458776872 458776916 8.450000e-07 65.8
9 TraesCS6B01G302400 chr5B 92.453 477 34 2 1463 1939 562452602 562453076 0.000000e+00 680.0
10 TraesCS6B01G302400 chr5B 90.446 157 14 1 2331 2487 562454532 562454687 4.770000e-49 206.0
11 TraesCS6B01G302400 chr5B 79.916 239 28 12 2573 2807 562456252 562456474 1.360000e-34 158.0
12 TraesCS6B01G302400 chr5B 98.438 64 1 0 1955 2018 562453068 562453131 2.980000e-21 113.0
13 TraesCS6B01G302400 chr7B 83.133 166 24 4 1201 1364 157219380 157219217 8.160000e-32 148.0
14 TraesCS6B01G302400 chr7A 83.133 166 24 4 1201 1364 203042071 203041908 8.160000e-32 148.0
15 TraesCS6B01G302400 chr7D 80.423 189 33 4 1195 1381 193587050 193586864 1.370000e-29 141.0
16 TraesCS6B01G302400 chr2B 87.952 83 8 2 300 382 468650371 468650451 3.000000e-16 97.1
17 TraesCS6B01G302400 chr2B 97.297 37 1 0 339 375 772335879 772335843 3.040000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G302400 chr6B 542222567 542226213 3646 False 6735.000000 6735 100.000000 1 3647 1 chr6B.!!$F1 3646
1 TraesCS6B01G302400 chr6D 360679737 360683468 3731 False 2387.500000 3975 89.636500 1 3647 2 chr6D.!!$F1 3646
2 TraesCS6B01G302400 chr6A 501789018 501794441 5423 False 1590.666667 2126 90.244000 1 3647 3 chr6A.!!$F1 3646
3 TraesCS6B01G302400 chr5D 458776872 458778518 1646 False 475.933333 994 86.313667 998 2807 3 chr5D.!!$F1 1809
4 TraesCS6B01G302400 chr5B 562452602 562456474 3872 False 289.250000 680 90.313250 1463 2807 4 chr5B.!!$F1 1344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 296 0.244450 CGTACTCGGGCTGTAACCAA 59.756 55.0 0.00 0.0 0.00 3.67 F
426 430 0.386113 GACTGAGGGAGCATCGTACC 59.614 60.0 0.00 0.0 34.37 3.34 F
433 437 0.389426 GGAGCATCGTACCGTGTGTT 60.389 55.0 0.00 0.0 34.37 3.32 F
2220 5201 0.670546 GGCAGACGCTTGCAAGAGTA 60.671 55.0 31.75 0.0 45.86 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1213 3029 0.674895 GCCCACGATCTTCTTGCTGT 60.675 55.000 0.00 0.0 0.00 4.40 R
2325 5306 0.104855 GCCGTATCCTGATCACAGCA 59.895 55.000 0.00 0.0 42.25 4.41 R
2326 5307 0.941463 CGCCGTATCCTGATCACAGC 60.941 60.000 0.00 0.0 42.25 4.40 R
3245 7778 4.767578 ACACTGGATGCAGTCTATCAAT 57.232 40.909 17.98 0.0 32.26 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 0.314935 CCATTGGCGCTCTTGTTTGT 59.685 50.000 7.64 0.00 0.00 2.83
44 46 2.756840 TGTGCACCATTCTGAGAGAG 57.243 50.000 15.69 0.00 0.00 3.20
49 51 2.028658 GCACCATTCTGAGAGAGTGTCA 60.029 50.000 9.36 0.00 30.90 3.58
71 73 0.396435 CACTGTTGGCACCCAGTCTA 59.604 55.000 14.31 0.00 37.42 2.59
100 102 5.122396 GTCCAAAGAATGAAGTATCGCTGTT 59.878 40.000 0.00 0.00 0.00 3.16
112 114 0.790207 TCGCTGTTCAAATCTGACGC 59.210 50.000 0.00 0.00 0.00 5.19
136 138 0.815095 ATACGCGGTGTGACAGATGA 59.185 50.000 12.47 0.00 0.00 2.92
146 148 3.040477 TGTGACAGATGATGGCCTATGA 58.960 45.455 3.32 0.00 35.23 2.15
159 161 4.566837 TGGCCTATGATTTCTTCCTCCTA 58.433 43.478 3.32 0.00 0.00 2.94
183 185 0.396435 CATAGCGGGCATTGGTCCTA 59.604 55.000 0.00 0.00 36.31 2.94
209 211 1.107114 CAGTCCTCACCGTGCTAGAT 58.893 55.000 0.00 0.00 0.00 1.98
294 296 0.244450 CGTACTCGGGCTGTAACCAA 59.756 55.000 0.00 0.00 0.00 3.67
311 313 1.135527 CCAAGTAACTATGCGGACGGA 59.864 52.381 0.00 0.00 0.00 4.69
418 422 2.694109 AGTATTTACGGACTGAGGGAGC 59.306 50.000 0.00 0.00 0.00 4.70
426 430 0.386113 GACTGAGGGAGCATCGTACC 59.614 60.000 0.00 0.00 34.37 3.34
433 437 0.389426 GGAGCATCGTACCGTGTGTT 60.389 55.000 0.00 0.00 34.37 3.32
587 591 1.985116 GACGGGACAGCCTTCCTCT 60.985 63.158 1.37 0.00 35.76 3.69
596 600 1.138661 CAGCCTTCCTCTCACATCTCC 59.861 57.143 0.00 0.00 0.00 3.71
616 620 1.774894 TTGTTCACCCTTAGCCGCCT 61.775 55.000 0.00 0.00 0.00 5.52
676 680 1.671379 GCACTTCCCTTCCCGTGTC 60.671 63.158 0.00 0.00 0.00 3.67
760 2538 0.682855 TTTTATTCCGCCCAGCCCAG 60.683 55.000 0.00 0.00 0.00 4.45
761 2539 3.714487 TTATTCCGCCCAGCCCAGC 62.714 63.158 0.00 0.00 0.00 4.85
825 2610 3.735181 GGAACCTACTACAGTGGCG 57.265 57.895 0.00 0.00 0.00 5.69
837 2622 2.509336 GTGGCGAGTCGATGGGTG 60.509 66.667 18.61 0.00 0.00 4.61
838 2623 2.994995 TGGCGAGTCGATGGGTGT 60.995 61.111 18.61 0.00 0.00 4.16
915 2707 3.420606 CCACTCGCAGCAGCAGTG 61.421 66.667 19.46 19.46 43.38 3.66
948 2762 2.028748 GCACACCAATCCAGCTGATTTT 60.029 45.455 17.39 2.40 41.85 1.82
957 2771 1.129998 CCAGCTGATTTTGAGCACGAG 59.870 52.381 17.39 0.00 39.05 4.18
1125 2939 4.005650 AGATGCGTCTTGACACATTTGAT 58.994 39.130 1.48 0.00 0.00 2.57
1137 2951 5.409826 TGACACATTTGATAATGCACACGTA 59.590 36.000 0.00 0.00 44.05 3.57
1142 2957 8.646356 CACATTTGATAATGCACACGTAAATTT 58.354 29.630 0.00 0.00 44.05 1.82
1143 2958 9.847706 ACATTTGATAATGCACACGTAAATTTA 57.152 25.926 0.00 0.00 44.05 1.40
1189 3005 2.029918 GGTGGGTTCATCTCTGTTTTGC 60.030 50.000 0.00 0.00 0.00 3.68
1394 3210 2.803133 CGGTCAGTCGCCACATATGATT 60.803 50.000 10.38 0.00 0.00 2.57
1396 3212 4.569943 GGTCAGTCGCCACATATGATTAT 58.430 43.478 10.38 0.00 0.00 1.28
1399 3215 6.390721 GTCAGTCGCCACATATGATTATACT 58.609 40.000 10.38 4.52 0.00 2.12
1400 3216 6.528423 GTCAGTCGCCACATATGATTATACTC 59.472 42.308 10.38 0.00 0.00 2.59
1401 3217 6.434340 TCAGTCGCCACATATGATTATACTCT 59.566 38.462 10.38 0.00 0.00 3.24
1403 3219 7.698550 CAGTCGCCACATATGATTATACTCTAC 59.301 40.741 10.38 0.00 0.00 2.59
1404 3220 7.612244 AGTCGCCACATATGATTATACTCTACT 59.388 37.037 10.38 0.00 0.00 2.57
1408 3235 9.504710 GCCACATATGATTATACTCTACTTACG 57.495 37.037 10.38 0.00 0.00 3.18
1449 3278 2.051692 TGGTAAGTGCCACACTAACCT 58.948 47.619 0.00 0.00 44.62 3.50
1450 3279 2.224426 TGGTAAGTGCCACACTAACCTG 60.224 50.000 0.00 0.00 44.62 4.00
1460 3289 4.141287 CCACACTAACCTGTCATTTTGGA 58.859 43.478 0.00 0.00 0.00 3.53
1754 3590 1.907807 GCCACCACCAAGCCATCAA 60.908 57.895 0.00 0.00 0.00 2.57
2080 5061 1.805943 TCTGTCCATGTTGTGATTGCG 59.194 47.619 0.00 0.00 0.00 4.85
2086 5067 2.485426 CCATGTTGTGATTGCGTCTCTT 59.515 45.455 0.00 0.00 0.00 2.85
2220 5201 0.670546 GGCAGACGCTTGCAAGAGTA 60.671 55.000 31.75 0.00 45.86 2.59
2255 5236 4.461431 GGTAAAAACAGATGAATTCCGGGT 59.539 41.667 0.00 0.00 0.00 5.28
2270 5251 1.673033 CCGGGTTGCTCTCTAACACTG 60.673 57.143 0.00 0.00 29.33 3.66
2274 5255 3.883489 GGGTTGCTCTCTAACACTGTTTT 59.117 43.478 0.00 0.00 0.00 2.43
2275 5256 5.061179 GGGTTGCTCTCTAACACTGTTTTA 58.939 41.667 0.00 0.00 0.00 1.52
2277 5258 6.206829 GGGTTGCTCTCTAACACTGTTTTATT 59.793 38.462 0.00 0.00 0.00 1.40
2278 5259 7.298854 GGTTGCTCTCTAACACTGTTTTATTC 58.701 38.462 0.00 0.00 0.00 1.75
2283 5264 9.204570 GCTCTCTAACACTGTTTTATTCTACAA 57.795 33.333 0.00 0.00 0.00 2.41
2298 5279 9.959749 TTTATTCTACAAAGACAAACATTCCAC 57.040 29.630 0.00 0.00 0.00 4.02
2299 5280 7.823745 ATTCTACAAAGACAAACATTCCACT 57.176 32.000 0.00 0.00 0.00 4.00
2300 5281 6.618287 TCTACAAAGACAAACATTCCACTG 57.382 37.500 0.00 0.00 0.00 3.66
2301 5282 6.119536 TCTACAAAGACAAACATTCCACTGT 58.880 36.000 0.00 0.00 0.00 3.55
2303 5284 5.410067 ACAAAGACAAACATTCCACTGTTG 58.590 37.500 0.00 0.00 39.25 3.33
2304 5285 4.654091 AAGACAAACATTCCACTGTTGG 57.346 40.909 0.00 0.00 45.56 3.77
2305 5286 3.631250 AGACAAACATTCCACTGTTGGT 58.369 40.909 0.00 0.00 44.19 3.67
2306 5287 3.964909 GACAAACATTCCACTGTTGGTC 58.035 45.455 8.30 8.30 46.99 4.02
2307 5288 3.631250 ACAAACATTCCACTGTTGGTCT 58.369 40.909 0.00 0.00 38.62 3.85
2308 5289 3.632145 ACAAACATTCCACTGTTGGTCTC 59.368 43.478 0.00 0.00 38.62 3.36
2310 5291 3.576078 ACATTCCACTGTTGGTCTCAA 57.424 42.857 0.00 0.00 44.35 3.02
2323 5304 5.756195 TTGGTCTCAACTCACAAATCTTG 57.244 39.130 0.00 0.00 0.00 3.02
2324 5305 3.565482 TGGTCTCAACTCACAAATCTTGC 59.435 43.478 0.00 0.00 0.00 4.01
2325 5306 3.817647 GGTCTCAACTCACAAATCTTGCT 59.182 43.478 0.00 0.00 0.00 3.91
2326 5307 4.320057 GGTCTCAACTCACAAATCTTGCTG 60.320 45.833 0.00 0.00 0.00 4.41
2410 5434 1.519751 GGTACATGCCCAACAACGCA 61.520 55.000 0.00 0.00 39.79 5.24
2583 7085 2.821437 CTGGAGAGGTACTTCAAGGGA 58.179 52.381 7.82 0.00 41.55 4.20
2710 7226 5.163281 TGCCGGTTACCAGAAACTAAATA 57.837 39.130 1.90 0.00 0.00 1.40
2741 7257 1.153784 CCGTTGCAATGGCCATCAC 60.154 57.895 24.31 14.81 40.13 3.06
2745 7261 0.618107 TTGCAATGGCCATCACCCAT 60.618 50.000 21.08 0.00 44.75 4.00
2830 7350 6.476243 TCCTTTGCTGTATTTTTCTCGTAC 57.524 37.500 0.00 0.00 0.00 3.67
2841 7361 2.983402 TTCTCGTACACTGTCCTTCG 57.017 50.000 0.00 0.00 0.00 3.79
2914 7434 3.281727 TGAACCTTTGAAGAGTGCAGT 57.718 42.857 0.00 0.00 0.00 4.40
2927 7447 6.324770 TGAAGAGTGCAGTTCCTCATGATATA 59.675 38.462 0.00 0.00 0.00 0.86
2928 7448 6.931790 AGAGTGCAGTTCCTCATGATATAT 57.068 37.500 0.00 0.00 0.00 0.86
2955 7475 4.141711 ACTGACAAAAGCACTGGTAGAAGA 60.142 41.667 0.00 0.00 0.00 2.87
2978 7498 7.004691 AGAAAGGTAAGATTATGGTAATGGCC 58.995 38.462 0.00 0.00 0.00 5.36
2994 7514 6.948309 GGTAATGGCCTCTTTATTCACCATAT 59.052 38.462 3.32 0.00 36.91 1.78
3001 7521 8.860088 GGCCTCTTTATTCACCATATAACATTT 58.140 33.333 0.00 0.00 0.00 2.32
3110 7643 2.872245 TCTGCACAGTAACTTTGCTGAC 59.128 45.455 13.26 6.12 42.54 3.51
3245 7778 2.024176 TGGAGGGAAGCAGTGTCTAA 57.976 50.000 0.00 0.00 0.00 2.10
3527 8060 3.193267 GTGAATAAAGTTGCATGGCCTGA 59.807 43.478 3.32 0.00 0.00 3.86
3543 8076 2.562298 GCCTGAATTGTTCAATGGGACA 59.438 45.455 12.75 0.00 39.58 4.02
3614 8148 2.519377 TAACCCATATCGCAGTTCCG 57.481 50.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 13 1.065600 GCACAAACAAGAGCGCCAA 59.934 52.632 2.29 0.00 0.00 4.52
27 29 1.973515 ACACTCTCTCAGAATGGTGCA 59.026 47.619 0.00 0.00 36.16 4.57
71 73 5.352569 CGATACTTCATTCTTTGGACAAGCT 59.647 40.000 0.00 0.00 0.00 3.74
100 102 2.222707 CGTATTTGCGCGTCAGATTTGA 60.223 45.455 8.43 0.00 0.00 2.69
123 125 0.254178 AGGCCATCATCTGTCACACC 59.746 55.000 5.01 0.00 0.00 4.16
128 130 5.558818 AGAAATCATAGGCCATCATCTGTC 58.441 41.667 5.01 0.00 0.00 3.51
129 131 5.579753 AGAAATCATAGGCCATCATCTGT 57.420 39.130 5.01 0.00 0.00 3.41
136 138 3.986134 AGGAGGAAGAAATCATAGGCCAT 59.014 43.478 5.01 0.00 0.00 4.40
146 148 5.372373 GCTATGCAACTAGGAGGAAGAAAT 58.628 41.667 0.00 0.00 0.00 2.17
159 161 1.386525 CCAATGCCCGCTATGCAACT 61.387 55.000 0.00 0.00 42.92 3.16
183 185 0.836400 ACGGTGAGGACTGGACCATT 60.836 55.000 0.00 0.00 32.03 3.16
209 211 0.680921 CCCGTCCGTCTACCTAACCA 60.681 60.000 0.00 0.00 0.00 3.67
294 296 4.765856 AGAATATCCGTCCGCATAGTTACT 59.234 41.667 0.00 0.00 0.00 2.24
311 313 9.975218 GATAGAGAGAAGAGGGTAGAAGAATAT 57.025 37.037 0.00 0.00 0.00 1.28
384 388 6.470556 GTCCGTAAATACTTAGTCCGAGAAAC 59.529 42.308 0.00 0.00 0.00 2.78
395 399 4.340381 GCTCCCTCAGTCCGTAAATACTTA 59.660 45.833 0.00 0.00 0.00 2.24
444 448 4.794439 GCCATTTCCAACGCCGCC 62.794 66.667 0.00 0.00 0.00 6.13
587 591 2.338809 AGGGTGAACAAGGAGATGTGA 58.661 47.619 0.00 0.00 32.81 3.58
596 600 1.305930 GGCGGCTAAGGGTGAACAAG 61.306 60.000 0.00 0.00 0.00 3.16
744 2517 4.189580 GCTGGGCTGGGCGGAATA 62.190 66.667 0.00 0.00 0.00 1.75
761 2539 4.729918 GGGTGCACCTGGGCTGAG 62.730 72.222 33.91 0.00 35.85 3.35
788 2571 4.752879 CATTCCCGCCGGTCGTGT 62.753 66.667 15.38 0.00 36.19 4.49
807 2590 1.134560 CTCGCCACTGTAGTAGGTTCC 59.865 57.143 0.00 0.00 0.00 3.62
823 2608 2.740714 GCAACACCCATCGACTCGC 61.741 63.158 0.00 0.00 0.00 5.03
824 2609 1.374125 TGCAACACCCATCGACTCG 60.374 57.895 0.00 0.00 0.00 4.18
825 2610 1.626654 CGTGCAACACCCATCGACTC 61.627 60.000 0.00 0.00 35.74 3.36
915 2707 3.423154 GTGTGCGCTGGTAGTGGC 61.423 66.667 9.73 0.00 0.00 5.01
916 2708 2.742372 GGTGTGCGCTGGTAGTGG 60.742 66.667 9.73 0.00 0.00 4.00
917 2709 0.955428 ATTGGTGTGCGCTGGTAGTG 60.955 55.000 9.73 0.00 0.00 2.74
918 2710 0.673644 GATTGGTGTGCGCTGGTAGT 60.674 55.000 9.73 0.00 0.00 2.73
1125 2939 8.132604 TGATCGATAAATTTACGTGTGCATTA 57.867 30.769 0.00 0.00 0.00 1.90
1142 2957 8.272866 CGCTAACACATTTTAACATGATCGATA 58.727 33.333 8.57 0.00 0.00 2.92
1143 2958 7.125755 CGCTAACACATTTTAACATGATCGAT 58.874 34.615 8.57 0.00 0.00 3.59
1189 3005 0.875059 GGACGCCTGGAGAACAAAAG 59.125 55.000 3.87 0.00 0.00 2.27
1213 3029 0.674895 GCCCACGATCTTCTTGCTGT 60.675 55.000 0.00 0.00 0.00 4.40
1286 3102 4.680237 CCCAGCGCGTTCTCCACA 62.680 66.667 8.43 0.00 0.00 4.17
1310 3126 2.750237 TGCGACTCGAGCCAGCTA 60.750 61.111 22.07 10.45 0.00 3.32
1382 3198 9.504710 CGTAAGTAGAGTATAATCATATGTGGC 57.495 37.037 2.62 0.00 0.00 5.01
1394 3210 4.060900 CCGCTGGTCGTAAGTAGAGTATA 58.939 47.826 0.00 0.00 36.19 1.47
1396 3212 2.283298 CCGCTGGTCGTAAGTAGAGTA 58.717 52.381 0.00 0.00 36.19 2.59
1399 3215 1.805254 GCCGCTGGTCGTAAGTAGA 59.195 57.895 0.00 0.00 36.19 2.59
1400 3216 1.585521 CGCCGCTGGTCGTAAGTAG 60.586 63.158 0.00 0.00 36.19 2.57
1401 3217 2.039974 TCGCCGCTGGTCGTAAGTA 61.040 57.895 9.61 0.00 36.19 2.24
1403 3219 2.879462 GTCGCCGCTGGTCGTAAG 60.879 66.667 9.61 0.00 36.19 2.34
1404 3220 4.424566 GGTCGCCGCTGGTCGTAA 62.425 66.667 9.61 0.00 36.19 3.18
1408 3235 2.171725 GTAATGGTCGCCGCTGGTC 61.172 63.158 0.00 0.00 0.00 4.02
1411 3238 2.098233 AACGTAATGGTCGCCGCTG 61.098 57.895 0.00 0.00 0.00 5.18
1449 3278 2.553770 CGCGCGTCCAAAATGACA 59.446 55.556 24.19 0.00 34.88 3.58
1450 3279 2.869702 GCGCGCGTCCAAAATGAC 60.870 61.111 32.35 6.30 0.00 3.06
1482 3318 1.153745 GTCCGCGATGTGCTTCTCT 60.154 57.895 8.23 0.00 43.27 3.10
1746 3582 2.671070 CACTCCCCGTTGATGGCT 59.329 61.111 0.00 0.00 0.00 4.75
2034 3870 1.032014 GCTGGCAAAGTTGGTTCTCA 58.968 50.000 0.00 0.00 0.00 3.27
2080 5061 5.491635 AGAAGAACAGCAAACAAAGAGAC 57.508 39.130 0.00 0.00 0.00 3.36
2086 5067 3.381272 CCTGGAAGAAGAACAGCAAACAA 59.619 43.478 0.00 0.00 34.07 2.83
2255 5236 9.204570 GTAGAATAAAACAGTGTTAGAGAGCAA 57.795 33.333 9.37 0.00 0.00 3.91
2274 5255 8.783093 CAGTGGAATGTTTGTCTTTGTAGAATA 58.217 33.333 0.00 0.00 30.65 1.75
2275 5256 7.285401 ACAGTGGAATGTTTGTCTTTGTAGAAT 59.715 33.333 0.00 0.00 30.65 2.40
2277 5258 6.119536 ACAGTGGAATGTTTGTCTTTGTAGA 58.880 36.000 0.00 0.00 0.00 2.59
2278 5259 6.377327 ACAGTGGAATGTTTGTCTTTGTAG 57.623 37.500 0.00 0.00 0.00 2.74
2301 5282 4.036734 GCAAGATTTGTGAGTTGAGACCAA 59.963 41.667 0.00 0.00 0.00 3.67
2303 5284 3.817647 AGCAAGATTTGTGAGTTGAGACC 59.182 43.478 0.00 0.00 0.00 3.85
2304 5285 4.781071 CAGCAAGATTTGTGAGTTGAGAC 58.219 43.478 0.00 0.00 0.00 3.36
2305 5286 3.251729 GCAGCAAGATTTGTGAGTTGAGA 59.748 43.478 0.00 0.00 0.00 3.27
2306 5287 3.252701 AGCAGCAAGATTTGTGAGTTGAG 59.747 43.478 0.00 0.00 0.00 3.02
2307 5288 3.004002 CAGCAGCAAGATTTGTGAGTTGA 59.996 43.478 0.00 0.00 0.00 3.18
2308 5289 3.243301 ACAGCAGCAAGATTTGTGAGTTG 60.243 43.478 0.00 0.00 0.00 3.16
2310 5291 2.292569 CACAGCAGCAAGATTTGTGAGT 59.707 45.455 4.56 0.00 41.12 3.41
2311 5292 2.551032 TCACAGCAGCAAGATTTGTGAG 59.449 45.455 8.44 0.00 42.10 3.51
2313 5294 3.057806 TGATCACAGCAGCAAGATTTGTG 60.058 43.478 4.24 4.24 40.25 3.33
2314 5295 3.151554 TGATCACAGCAGCAAGATTTGT 58.848 40.909 0.00 0.00 0.00 2.83
2315 5296 3.427638 CCTGATCACAGCAGCAAGATTTG 60.428 47.826 0.00 0.00 42.25 2.32
2316 5297 2.753452 CCTGATCACAGCAGCAAGATTT 59.247 45.455 0.00 0.00 42.25 2.17
2317 5298 2.026542 TCCTGATCACAGCAGCAAGATT 60.027 45.455 0.00 0.00 42.25 2.40
2318 5299 1.558294 TCCTGATCACAGCAGCAAGAT 59.442 47.619 0.00 0.00 42.25 2.40
2319 5300 0.978907 TCCTGATCACAGCAGCAAGA 59.021 50.000 0.00 0.00 42.25 3.02
2321 5302 2.739609 CGTATCCTGATCACAGCAGCAA 60.740 50.000 0.00 0.00 42.25 3.91
2322 5303 1.202452 CGTATCCTGATCACAGCAGCA 60.202 52.381 0.00 0.00 42.25 4.41
2323 5304 1.495878 CGTATCCTGATCACAGCAGC 58.504 55.000 0.00 0.00 42.25 5.25
2324 5305 1.871408 GCCGTATCCTGATCACAGCAG 60.871 57.143 0.00 0.00 42.25 4.24
2325 5306 0.104855 GCCGTATCCTGATCACAGCA 59.895 55.000 0.00 0.00 42.25 4.41
2326 5307 0.941463 CGCCGTATCCTGATCACAGC 60.941 60.000 0.00 0.00 42.25 4.40
2410 5434 1.224592 GGAGATGTGCGGGGTCATT 59.775 57.895 0.00 0.00 0.00 2.57
2583 7085 3.003763 GGCTCCGGGAAGTCCTGT 61.004 66.667 0.00 0.00 40.86 4.00
2682 7185 1.078497 CTGGTAACCGGCATGCTGA 60.078 57.895 28.32 5.05 0.00 4.26
2686 7189 1.821216 AGTTTCTGGTAACCGGCATG 58.179 50.000 0.00 0.00 0.00 4.06
2687 7190 3.706600 TTAGTTTCTGGTAACCGGCAT 57.293 42.857 0.00 0.00 0.00 4.40
2692 7208 9.569167 GCATCTTTTATTTAGTTTCTGGTAACC 57.431 33.333 0.00 0.00 0.00 2.85
2696 7212 8.306761 CCAAGCATCTTTTATTTAGTTTCTGGT 58.693 33.333 0.00 0.00 0.00 4.00
2710 7226 0.319813 GCAACGGCCAAGCATCTTTT 60.320 50.000 2.24 0.00 0.00 2.27
2830 7350 2.345641 CGAAATACAGCGAAGGACAGTG 59.654 50.000 0.00 0.00 0.00 3.66
2900 7420 3.558931 TGAGGAACTGCACTCTTCAAA 57.441 42.857 3.98 0.00 41.55 2.69
2927 7447 4.207165 ACCAGTGCTTTTGTCAGTACAAT 58.793 39.130 0.00 0.00 44.85 2.71
2928 7448 3.616219 ACCAGTGCTTTTGTCAGTACAA 58.384 40.909 0.00 0.00 43.85 2.41
2942 7462 5.148651 TCTTACCTTTCTTCTACCAGTGC 57.851 43.478 0.00 0.00 0.00 4.40
2955 7475 6.922540 AGGCCATTACCATAATCTTACCTTT 58.077 36.000 5.01 0.00 0.00 3.11
2994 7514 6.968263 TGTTCATGGGAAAGTCAAATGTTA 57.032 33.333 0.00 0.00 34.13 2.41
3001 7521 3.304911 TGGTTGTTCATGGGAAAGTCA 57.695 42.857 0.00 0.00 34.13 3.41
3110 7643 6.324819 CAACCATTTAGCCATAAACTCTGTG 58.675 40.000 0.00 0.00 33.78 3.66
3245 7778 4.767578 ACACTGGATGCAGTCTATCAAT 57.232 40.909 17.98 0.00 32.26 2.57
3527 8060 7.119553 GTGCAATTTATGTCCCATTGAACAATT 59.880 33.333 0.00 0.00 36.71 2.32
3614 8148 5.163457 TGAGGTGACAAAATTTTGAGAACCC 60.163 40.000 32.20 24.44 40.55 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.