Multiple sequence alignment - TraesCS6B01G302300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G302300 chr6B 100.000 5862 0 0 1 5862 542016152 542010291 0.000000e+00 10826.0
1 TraesCS6B01G302300 chr6B 76.613 496 83 19 3851 4321 343006142 343006629 5.870000e-60 243.0
2 TraesCS6B01G302300 chr6D 95.696 2370 88 5 3496 5862 360343061 360340703 0.000000e+00 3799.0
3 TraesCS6B01G302300 chr6D 93.144 1094 26 12 231 1298 360344431 360343361 0.000000e+00 1559.0
4 TraesCS6B01G302300 chr6D 87.634 186 11 10 3233 3414 428047041 428047218 7.700000e-49 206.0
5 TraesCS6B01G302300 chr6D 97.015 67 2 0 3163 3229 360343361 360343295 4.800000e-21 113.0
6 TraesCS6B01G302300 chr6D 87.368 95 7 1 3411 3505 360343286 360343197 2.890000e-18 104.0
7 TraesCS6B01G302300 chr6A 94.897 2371 101 11 3500 5862 501501060 501498702 0.000000e+00 3690.0
8 TraesCS6B01G302300 chr6A 94.839 1085 23 9 234 1298 501502416 501501345 0.000000e+00 1663.0
9 TraesCS6B01G302300 chr6A 94.320 757 36 4 1297 2050 29802768 29802016 0.000000e+00 1153.0
10 TraesCS6B01G302300 chr6A 77.698 834 114 34 1298 2091 51434658 51433857 1.500000e-120 444.0
11 TraesCS6B01G302300 chr6A 90.351 228 22 0 1 228 155252035 155252262 3.430000e-77 300.0
12 TraesCS6B01G302300 chr6A 93.671 79 3 2 3151 3229 501501353 501501277 3.710000e-22 117.0
13 TraesCS6B01G302300 chr6A 86.047 86 7 1 3416 3501 501501277 501501197 2.910000e-13 87.9
14 TraesCS6B01G302300 chr2B 90.347 808 32 9 1298 2091 535239580 535240355 0.000000e+00 1018.0
15 TraesCS6B01G302300 chr2B 92.582 674 39 7 2497 3164 535240723 535241391 0.000000e+00 957.0
16 TraesCS6B01G302300 chr2B 90.909 341 14 2 2173 2496 535240354 535240694 5.390000e-120 442.0
17 TraesCS6B01G302300 chr2B 91.342 231 19 1 1 231 454345949 454346178 1.230000e-81 315.0
18 TraesCS6B01G302300 chr2B 90.909 231 21 0 1 231 566618167 566617937 1.590000e-80 311.0
19 TraesCS6B01G302300 chr2B 90.476 231 22 0 1 231 722403483 722403253 7.380000e-79 305.0
20 TraesCS6B01G302300 chr2B 90.722 97 5 3 2087 2181 494265082 494265176 6.170000e-25 126.0
21 TraesCS6B01G302300 chr5D 87.081 596 43 13 1504 2091 519798876 519798307 1.380000e-180 643.0
22 TraesCS6B01G302300 chr5D 90.385 468 34 5 2706 3164 519797828 519797363 6.500000e-169 604.0
23 TraesCS6B01G302300 chr5D 85.714 462 28 10 2176 2603 519798305 519797848 2.490000e-123 453.0
24 TraesCS6B01G302300 chr5D 86.331 139 17 2 1298 1436 519799353 519799217 3.660000e-32 150.0
25 TraesCS6B01G302300 chr5A 77.830 848 116 35 1284 2091 44900857 44900042 5.350000e-125 459.0
26 TraesCS6B01G302300 chr5A 96.429 84 3 0 2303 2386 659396326 659396409 7.920000e-29 139.0
27 TraesCS6B01G302300 chr4B 93.074 231 15 1 1 231 88737681 88737452 2.620000e-88 337.0
28 TraesCS6B01G302300 chr4B 88.701 177 18 2 3242 3418 500417061 500416887 1.280000e-51 215.0
29 TraesCS6B01G302300 chr4B 75.820 244 51 7 4076 4316 622436320 622436082 3.710000e-22 117.0
30 TraesCS6B01G302300 chr4B 94.000 50 3 0 3117 3166 158283431 158283382 6.300000e-10 76.8
31 TraesCS6B01G302300 chr4B 88.235 51 6 0 3114 3164 49441353 49441403 1.760000e-05 62.1
32 TraesCS6B01G302300 chr2A 92.208 231 18 0 1 231 678005369 678005139 1.580000e-85 327.0
33 TraesCS6B01G302300 chr2A 91.124 169 15 0 3245 3413 768693137 768693305 4.570000e-56 230.0
34 TraesCS6B01G302300 chr1D 90.517 232 21 1 1 231 189534215 189533984 7.380000e-79 305.0
35 TraesCS6B01G302300 chr1D 88.506 174 13 2 3245 3418 121624622 121624456 2.770000e-48 204.0
36 TraesCS6B01G302300 chr1D 79.918 244 30 12 3848 4079 302712626 302712862 1.690000e-35 161.0
37 TraesCS6B01G302300 chr4A 90.435 230 22 0 2 231 311662503 311662274 2.650000e-78 303.0
38 TraesCS6B01G302300 chr4A 87.963 108 7 5 2090 2192 379041032 379040926 7.980000e-24 122.0
39 TraesCS6B01G302300 chr4D 90.043 231 23 0 1 231 81216140 81215910 3.430000e-77 300.0
40 TraesCS6B01G302300 chr4D 86.726 113 7 6 2074 2182 282080046 282079938 1.030000e-22 119.0
41 TraesCS6B01G302300 chr2D 95.105 143 7 0 3272 3414 74951200 74951058 5.910000e-55 226.0
42 TraesCS6B01G302300 chr2D 88.679 106 8 4 2070 2174 534925447 534925549 6.170000e-25 126.0
43 TraesCS6B01G302300 chr2D 82.474 97 16 1 3849 3944 107011236 107011332 3.760000e-12 84.2
44 TraesCS6B01G302300 chr7D 79.341 334 49 13 3860 4176 578131428 578131098 3.560000e-52 217.0
45 TraesCS6B01G302300 chr7D 76.014 296 52 16 3866 4151 53561635 53561349 1.020000e-27 135.0
46 TraesCS6B01G302300 chr7D 93.333 90 2 3 2087 2174 498229835 498229922 4.770000e-26 130.0
47 TraesCS6B01G302300 chr7D 89.000 100 5 5 2084 2180 195626189 195626093 1.030000e-22 119.0
48 TraesCS6B01G302300 chr7B 89.080 174 17 2 3242 3415 442137375 442137546 1.280000e-51 215.0
49 TraesCS6B01G302300 chr7B 87.500 112 8 5 2073 2181 639796300 639796192 2.220000e-24 124.0
50 TraesCS6B01G302300 chr5B 88.701 177 18 2 3242 3418 392179973 392179799 1.280000e-51 215.0
51 TraesCS6B01G302300 chr5B 78.750 240 43 8 1698 1935 614350630 614350863 2.830000e-33 154.0
52 TraesCS6B01G302300 chr5B 93.407 91 2 3 2086 2174 264876390 264876302 1.330000e-26 132.0
53 TraesCS6B01G302300 chr5B 91.398 93 6 2 2084 2175 264876296 264876387 6.170000e-25 126.0
54 TraesCS6B01G302300 chr5B 72.072 444 91 21 3899 4320 10096657 10097089 1.040000e-17 102.0
55 TraesCS6B01G302300 chr3B 89.080 174 14 3 3242 3415 560719362 560719530 1.660000e-50 211.0
56 TraesCS6B01G302300 chr3B 72.984 496 94 19 3852 4321 181296233 181295752 2.850000e-28 137.0
57 TraesCS6B01G302300 chr3B 72.059 476 90 25 3868 4322 778675672 778675219 1.040000e-17 102.0
58 TraesCS6B01G302300 chr1B 88.506 174 14 2 3242 3415 229945285 229945452 7.700000e-49 206.0
59 TraesCS6B01G302300 chr7A 83.626 171 24 3 1766 1935 2556894 2556727 2.190000e-34 158.0
60 TraesCS6B01G302300 chr7A 83.333 84 14 0 3849 3932 471792065 471792148 1.750000e-10 78.7
61 TraesCS6B01G302300 chrUn 78.750 240 43 8 1698 1935 335760231 335760464 2.830000e-33 154.0
62 TraesCS6B01G302300 chrUn 75.820 244 51 7 4076 4316 60348513 60348275 3.710000e-22 117.0
63 TraesCS6B01G302300 chr3D 82.828 99 12 4 3849 3944 478641583 478641679 3.760000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G302300 chr6B 542010291 542016152 5861 True 10826.000000 10826 100.000000 1 5862 1 chr6B.!!$R1 5861
1 TraesCS6B01G302300 chr6D 360340703 360344431 3728 True 1393.750000 3799 93.305750 231 5862 4 chr6D.!!$R1 5631
2 TraesCS6B01G302300 chr6A 501498702 501502416 3714 True 1389.475000 3690 92.363500 234 5862 4 chr6A.!!$R3 5628
3 TraesCS6B01G302300 chr6A 29802016 29802768 752 True 1153.000000 1153 94.320000 1297 2050 1 chr6A.!!$R1 753
4 TraesCS6B01G302300 chr6A 51433857 51434658 801 True 444.000000 444 77.698000 1298 2091 1 chr6A.!!$R2 793
5 TraesCS6B01G302300 chr2B 535239580 535241391 1811 False 805.666667 1018 91.279333 1298 3164 3 chr2B.!!$F3 1866
6 TraesCS6B01G302300 chr5D 519797363 519799353 1990 True 462.500000 643 87.377750 1298 3164 4 chr5D.!!$R1 1866
7 TraesCS6B01G302300 chr5A 44900042 44900857 815 True 459.000000 459 77.830000 1284 2091 1 chr5A.!!$R1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.250295 CCCACGAAAGCACTCTTGGA 60.250 55.000 10.96 0.00 36.98 3.53 F
468 478 0.762418 CCCAAACCTTCCCCCAAAAC 59.238 55.000 0.00 0.00 0.00 2.43 F
469 479 1.694370 CCCAAACCTTCCCCCAAAACT 60.694 52.381 0.00 0.00 0.00 2.66 F
1318 1359 1.720694 TAGACCATGATGACGCGCGA 61.721 55.000 39.36 16.76 0.00 5.87 F
2616 3035 2.499289 AGGTTCACAGCTATCCAGACAG 59.501 50.000 0.00 0.00 0.00 3.51 F
3238 3668 0.256464 CGGCCCAACCCAACCTATAA 59.744 55.000 0.00 0.00 33.26 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2237 1.082690 GCTACTCTTTGCAGGTCAGC 58.917 55.000 0.0 0.0 0.00 4.26 R
2128 2480 3.128938 AGAGCGTTTAGATCACTTAGCGT 59.871 43.478 0.0 0.0 37.82 5.07 R
2129 2481 3.696898 AGAGCGTTTAGATCACTTAGCG 58.303 45.455 0.0 0.0 37.82 4.26 R
2643 3062 0.036388 CCGCCTCTTCCAGCAAGTTA 60.036 55.000 0.0 0.0 33.27 2.24 R
4118 4696 0.537143 TTTCTTGCATCGGTGGCTGT 60.537 50.000 0.0 0.0 0.00 4.40 R
5187 5767 0.480252 AAAGAGAACAAGGCAGGGCT 59.520 50.000 0.0 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.619316 CTACGAGTAGGAATAGAAAATGAGATG 57.381 37.037 2.46 0.00 0.00 2.90
35 36 8.012957 ACGAGTAGGAATAGAAAATGAGATGT 57.987 34.615 0.00 0.00 0.00 3.06
36 37 8.138712 ACGAGTAGGAATAGAAAATGAGATGTC 58.861 37.037 0.00 0.00 0.00 3.06
37 38 7.596995 CGAGTAGGAATAGAAAATGAGATGTCC 59.403 40.741 0.00 0.00 0.00 4.02
38 39 8.560124 AGTAGGAATAGAAAATGAGATGTCCT 57.440 34.615 0.00 0.00 36.88 3.85
39 40 8.997734 AGTAGGAATAGAAAATGAGATGTCCTT 58.002 33.333 0.00 0.00 34.80 3.36
40 41 9.620259 GTAGGAATAGAAAATGAGATGTCCTTT 57.380 33.333 0.00 0.00 34.80 3.11
41 42 8.517062 AGGAATAGAAAATGAGATGTCCTTTG 57.483 34.615 0.00 0.00 28.44 2.77
42 43 8.112183 AGGAATAGAAAATGAGATGTCCTTTGT 58.888 33.333 0.00 0.00 28.44 2.83
43 44 8.743714 GGAATAGAAAATGAGATGTCCTTTGTT 58.256 33.333 0.00 0.00 0.00 2.83
48 49 8.912988 AGAAAATGAGATGTCCTTTGTTTTACA 58.087 29.630 0.00 0.00 0.00 2.41
49 50 9.696917 GAAAATGAGATGTCCTTTGTTTTACAT 57.303 29.630 0.00 0.00 35.34 2.29
50 51 9.696917 AAAATGAGATGTCCTTTGTTTTACATC 57.303 29.630 6.25 6.25 45.49 3.06
51 52 8.408043 AATGAGATGTCCTTTGTTTTACATCA 57.592 30.769 14.63 0.00 46.84 3.07
52 53 8.585471 ATGAGATGTCCTTTGTTTTACATCAT 57.415 30.769 14.63 1.97 46.84 2.45
53 54 9.685276 ATGAGATGTCCTTTGTTTTACATCATA 57.315 29.630 14.63 5.42 46.84 2.15
54 55 9.166173 TGAGATGTCCTTTGTTTTACATCATAG 57.834 33.333 14.63 0.00 46.84 2.23
55 56 8.511604 AGATGTCCTTTGTTTTACATCATAGG 57.488 34.615 14.63 0.00 46.84 2.57
56 57 8.328758 AGATGTCCTTTGTTTTACATCATAGGA 58.671 33.333 14.63 0.00 46.84 2.94
57 58 9.125026 GATGTCCTTTGTTTTACATCATAGGAT 57.875 33.333 8.92 0.00 44.84 3.24
58 59 8.877864 TGTCCTTTGTTTTACATCATAGGATT 57.122 30.769 7.39 0.00 41.26 3.01
59 60 9.308000 TGTCCTTTGTTTTACATCATAGGATTT 57.692 29.630 7.39 0.00 41.26 2.17
84 85 9.793259 TTTTTCCATTGAGTCTAGACTAATGTT 57.207 29.630 29.22 13.68 42.66 2.71
85 86 9.793259 TTTTCCATTGAGTCTAGACTAATGTTT 57.207 29.630 29.22 13.16 42.66 2.83
93 94 9.702253 TGAGTCTAGACTAATGTTTATTCTCCT 57.298 33.333 25.23 0.00 42.66 3.69
107 108 9.177608 TGTTTATTCTCCTATGAAATGTGAAGG 57.822 33.333 0.00 0.00 0.00 3.46
108 109 9.396022 GTTTATTCTCCTATGAAATGTGAAGGA 57.604 33.333 0.00 0.00 35.14 3.36
112 113 7.308450 TCTCCTATGAAATGTGAAGGATAGG 57.692 40.000 0.00 0.00 35.84 2.57
113 114 7.075797 TCTCCTATGAAATGTGAAGGATAGGA 58.924 38.462 0.00 0.00 39.29 2.94
114 115 7.568738 TCTCCTATGAAATGTGAAGGATAGGAA 59.431 37.037 0.00 0.00 40.44 3.36
115 116 7.739825 TCCTATGAAATGTGAAGGATAGGAAG 58.260 38.462 0.00 0.00 38.86 3.46
116 117 7.568738 TCCTATGAAATGTGAAGGATAGGAAGA 59.431 37.037 0.00 0.00 38.86 2.87
117 118 8.213679 CCTATGAAATGTGAAGGATAGGAAGAA 58.786 37.037 0.00 0.00 36.16 2.52
118 119 9.790344 CTATGAAATGTGAAGGATAGGAAGAAT 57.210 33.333 0.00 0.00 0.00 2.40
120 121 8.511604 TGAAATGTGAAGGATAGGAAGAATTC 57.488 34.615 0.00 0.00 46.67 2.17
159 160 9.454859 AAGATTCTATTCCTACAAACCAAAGAG 57.545 33.333 0.00 0.00 0.00 2.85
160 161 7.554476 AGATTCTATTCCTACAAACCAAAGAGC 59.446 37.037 0.00 0.00 0.00 4.09
161 162 6.121776 TCTATTCCTACAAACCAAAGAGCA 57.878 37.500 0.00 0.00 0.00 4.26
162 163 6.173339 TCTATTCCTACAAACCAAAGAGCAG 58.827 40.000 0.00 0.00 0.00 4.24
163 164 3.857157 TCCTACAAACCAAAGAGCAGT 57.143 42.857 0.00 0.00 0.00 4.40
164 165 4.967084 TCCTACAAACCAAAGAGCAGTA 57.033 40.909 0.00 0.00 0.00 2.74
165 166 5.298989 TCCTACAAACCAAAGAGCAGTAA 57.701 39.130 0.00 0.00 0.00 2.24
166 167 5.686753 TCCTACAAACCAAAGAGCAGTAAA 58.313 37.500 0.00 0.00 0.00 2.01
167 168 5.763204 TCCTACAAACCAAAGAGCAGTAAAG 59.237 40.000 0.00 0.00 0.00 1.85
168 169 5.763204 CCTACAAACCAAAGAGCAGTAAAGA 59.237 40.000 0.00 0.00 0.00 2.52
169 170 6.262273 CCTACAAACCAAAGAGCAGTAAAGAA 59.738 38.462 0.00 0.00 0.00 2.52
170 171 6.524101 ACAAACCAAAGAGCAGTAAAGAAA 57.476 33.333 0.00 0.00 0.00 2.52
171 172 7.112452 ACAAACCAAAGAGCAGTAAAGAAAT 57.888 32.000 0.00 0.00 0.00 2.17
172 173 7.555965 ACAAACCAAAGAGCAGTAAAGAAATT 58.444 30.769 0.00 0.00 0.00 1.82
173 174 8.040727 ACAAACCAAAGAGCAGTAAAGAAATTT 58.959 29.630 0.00 0.00 0.00 1.82
174 175 8.882736 CAAACCAAAGAGCAGTAAAGAAATTTT 58.117 29.630 0.00 0.00 0.00 1.82
175 176 9.448438 AAACCAAAGAGCAGTAAAGAAATTTTT 57.552 25.926 0.00 0.00 0.00 1.94
176 177 8.648557 ACCAAAGAGCAGTAAAGAAATTTTTC 57.351 30.769 0.00 0.00 37.45 2.29
177 178 7.710907 ACCAAAGAGCAGTAAAGAAATTTTTCC 59.289 33.333 0.00 0.00 37.92 3.13
178 179 7.928167 CCAAAGAGCAGTAAAGAAATTTTTCCT 59.072 33.333 0.00 0.00 37.92 3.36
179 180 9.965824 CAAAGAGCAGTAAAGAAATTTTTCCTA 57.034 29.630 0.00 0.00 37.92 2.94
224 225 9.898152 AAATCTTTACAAAATTCCTTCAAACCA 57.102 25.926 0.00 0.00 0.00 3.67
225 226 9.898152 AATCTTTACAAAATTCCTTCAAACCAA 57.102 25.926 0.00 0.00 0.00 3.67
226 227 9.898152 ATCTTTACAAAATTCCTTCAAACCAAA 57.102 25.926 0.00 0.00 0.00 3.28
227 228 9.377312 TCTTTACAAAATTCCTTCAAACCAAAG 57.623 29.630 0.00 0.00 0.00 2.77
228 229 8.499403 TTTACAAAATTCCTTCAAACCAAAGG 57.501 30.769 0.00 0.00 43.94 3.11
232 233 1.604604 TCCTTCAAACCAAAGGAGCG 58.395 50.000 0.51 0.00 45.74 5.03
284 285 0.318762 AGAGACCCACGAAAGCACTC 59.681 55.000 0.00 0.00 0.00 3.51
285 286 0.318762 GAGACCCACGAAAGCACTCT 59.681 55.000 0.00 0.00 0.00 3.24
286 287 0.759346 AGACCCACGAAAGCACTCTT 59.241 50.000 0.00 0.00 0.00 2.85
287 288 0.868406 GACCCACGAAAGCACTCTTG 59.132 55.000 0.00 0.00 31.78 3.02
288 289 0.535102 ACCCACGAAAGCACTCTTGG 60.535 55.000 0.00 4.19 35.11 3.61
289 290 0.250295 CCCACGAAAGCACTCTTGGA 60.250 55.000 10.96 0.00 36.98 3.53
290 291 1.593196 CCACGAAAGCACTCTTGGAA 58.407 50.000 5.01 0.00 36.98 3.53
304 305 4.889995 ACTCTTGGAACTTGGAAGGAAAAG 59.110 41.667 0.00 0.00 0.00 2.27
317 318 4.037923 GGAAGGAAAAGCATGTCTCACAAA 59.962 41.667 0.00 0.00 0.00 2.83
356 357 2.841266 TGACCCTCGTGAAATCCCATAA 59.159 45.455 0.00 0.00 0.00 1.90
361 364 3.313526 CCTCGTGAAATCCCATAAGCAAG 59.686 47.826 0.00 0.00 0.00 4.01
468 478 0.762418 CCCAAACCTTCCCCCAAAAC 59.238 55.000 0.00 0.00 0.00 2.43
469 479 1.694370 CCCAAACCTTCCCCCAAAACT 60.694 52.381 0.00 0.00 0.00 2.66
470 480 2.426561 CCCAAACCTTCCCCCAAAACTA 60.427 50.000 0.00 0.00 0.00 2.24
471 481 2.631062 CCAAACCTTCCCCCAAAACTAC 59.369 50.000 0.00 0.00 0.00 2.73
472 482 2.281539 AACCTTCCCCCAAAACTACG 57.718 50.000 0.00 0.00 0.00 3.51
565 587 3.667960 CGCAAAATCTCTTTCCACGAAGG 60.668 47.826 0.00 0.00 39.47 3.46
861 889 2.103340 GGGAAGAGCTCGCTCGTC 59.897 66.667 21.39 21.39 46.90 4.20
1311 1352 6.600427 TCGTACTGTTTACTAGACCATGATGA 59.400 38.462 0.00 0.00 0.00 2.92
1318 1359 1.720694 TAGACCATGATGACGCGCGA 61.721 55.000 39.36 16.76 0.00 5.87
1402 1446 6.771076 TGTTTATGCATAGTTTGTGATCGAC 58.229 36.000 6.50 0.00 0.00 4.20
1405 1449 3.261580 TGCATAGTTTGTGATCGACTGG 58.738 45.455 0.00 0.00 0.00 4.00
1410 1454 2.800544 AGTTTGTGATCGACTGGAAACG 59.199 45.455 0.00 0.00 0.00 3.60
1437 1481 2.951229 AGAATATAAACGGCAGGGGG 57.049 50.000 0.00 0.00 0.00 5.40
1632 1961 8.306038 CAAAAATCATATCTTCTGTCCAAACCA 58.694 33.333 0.00 0.00 0.00 3.67
1824 2174 9.559732 CCATTCAATCTCCACATACAGTAATAA 57.440 33.333 0.00 0.00 0.00 1.40
1887 2237 2.513753 TCAACAGCCATTACCTTGTGG 58.486 47.619 0.00 0.00 38.55 4.17
2098 2450 6.885922 ACAGTACAATGTAAATACTCCCTCC 58.114 40.000 0.00 0.00 0.00 4.30
2099 2451 6.442564 ACAGTACAATGTAAATACTCCCTCCA 59.557 38.462 0.00 0.00 0.00 3.86
2100 2452 7.127339 ACAGTACAATGTAAATACTCCCTCCAT 59.873 37.037 0.00 0.00 0.00 3.41
2101 2453 8.647796 CAGTACAATGTAAATACTCCCTCCATA 58.352 37.037 0.00 0.00 0.00 2.74
2102 2454 9.220906 AGTACAATGTAAATACTCCCTCCATAA 57.779 33.333 0.00 0.00 0.00 1.90
2103 2455 9.841295 GTACAATGTAAATACTCCCTCCATAAA 57.159 33.333 0.00 0.00 0.00 1.40
2104 2456 8.980481 ACAATGTAAATACTCCCTCCATAAAG 57.020 34.615 0.00 0.00 0.00 1.85
2105 2457 8.778059 ACAATGTAAATACTCCCTCCATAAAGA 58.222 33.333 0.00 0.00 0.00 2.52
2106 2458 9.627123 CAATGTAAATACTCCCTCCATAAAGAA 57.373 33.333 0.00 0.00 0.00 2.52
2116 2468 8.379331 ACTCCCTCCATAAAGAAATATAAGAGC 58.621 37.037 0.00 0.00 0.00 4.09
2117 2469 7.386851 TCCCTCCATAAAGAAATATAAGAGCG 58.613 38.462 0.00 0.00 0.00 5.03
2118 2470 7.016268 TCCCTCCATAAAGAAATATAAGAGCGT 59.984 37.037 0.00 0.00 0.00 5.07
2119 2471 7.661847 CCCTCCATAAAGAAATATAAGAGCGTT 59.338 37.037 0.00 0.00 0.00 4.84
2120 2472 9.057089 CCTCCATAAAGAAATATAAGAGCGTTT 57.943 33.333 0.00 0.00 0.00 3.60
2146 2498 5.756950 TCAAACGCTAAGTGATCTAAACG 57.243 39.130 0.00 0.00 0.00 3.60
2147 2499 4.090930 TCAAACGCTAAGTGATCTAAACGC 59.909 41.667 0.00 0.00 0.00 4.84
2148 2500 3.505464 ACGCTAAGTGATCTAAACGCT 57.495 42.857 0.00 0.00 0.00 5.07
2149 2501 3.436496 ACGCTAAGTGATCTAAACGCTC 58.564 45.455 0.00 0.00 0.00 5.03
2150 2502 3.128938 ACGCTAAGTGATCTAAACGCTCT 59.871 43.478 0.00 0.00 0.00 4.09
2151 2503 4.106197 CGCTAAGTGATCTAAACGCTCTT 58.894 43.478 0.00 0.00 0.00 2.85
2152 2504 5.163683 ACGCTAAGTGATCTAAACGCTCTTA 60.164 40.000 0.00 0.00 0.00 2.10
2153 2505 5.915758 CGCTAAGTGATCTAAACGCTCTTAT 59.084 40.000 0.00 0.00 0.00 1.73
2154 2506 7.076362 CGCTAAGTGATCTAAACGCTCTTATA 58.924 38.462 0.00 0.00 0.00 0.98
2155 2507 7.751348 CGCTAAGTGATCTAAACGCTCTTATAT 59.249 37.037 0.00 0.00 0.00 0.86
2156 2508 9.413048 GCTAAGTGATCTAAACGCTCTTATATT 57.587 33.333 0.00 0.00 0.00 1.28
2165 2517 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2166 2518 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2167 2519 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2168 2520 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2169 2521 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2170 2522 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2171 2523 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2172 2524 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2173 2525 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
2174 2526 9.597681 TCTTATATTTCTTTACGGAGGGAGTAT 57.402 33.333 0.00 0.00 0.00 2.12
2265 2620 2.879103 AATGGAAACGGGAGACACAT 57.121 45.000 0.00 0.00 0.00 3.21
2279 2634 5.828328 GGGAGACACATAAATTTAGGGAAGG 59.172 44.000 13.91 3.84 0.00 3.46
2299 2674 8.268605 GGGAAGGAAGATCAATAAGACTAACTT 58.731 37.037 0.00 0.00 42.04 2.66
2351 2733 7.517614 TGGTAACTGCTCAAAATGACAAATA 57.482 32.000 0.00 0.00 37.61 1.40
2469 2851 7.039644 ACAAATATATTTCGTGTCAACCCCAAA 60.040 33.333 7.76 0.00 0.00 3.28
2561 2980 7.063934 AGATTAGTATACCTGTAAAGGTGCC 57.936 40.000 15.50 2.27 43.03 5.01
2616 3035 2.499289 AGGTTCACAGCTATCCAGACAG 59.501 50.000 0.00 0.00 0.00 3.51
2634 3053 4.274700 CGGGTGGTGTCGACGTGT 62.275 66.667 11.62 0.00 0.00 4.49
2651 3072 2.671351 CGTGTCGTGATCCTAACTTGCT 60.671 50.000 0.00 0.00 0.00 3.91
2763 3185 3.612371 GAGCGACGACAAGAGGCGT 62.612 63.158 0.00 0.00 44.33 5.68
2776 3198 3.409026 AGAGGCGTTGACTCAAAAGAT 57.591 42.857 2.00 0.00 40.81 2.40
2881 3303 0.597637 CGCCGGCTTCCTGTACATAG 60.598 60.000 26.68 0.00 0.00 2.23
3076 3506 2.837498 CTGCGGGATGACAATGACATA 58.163 47.619 0.00 0.00 0.00 2.29
3137 3567 1.680522 ATCGCTGTGTGAGGCCCTAG 61.681 60.000 0.00 0.00 0.00 3.02
3144 3574 0.757188 TGTGAGGCCCTAGCTAGCTC 60.757 60.000 23.26 15.88 39.73 4.09
3146 3576 1.152440 GAGGCCCTAGCTAGCTCCA 60.152 63.158 23.26 3.28 39.73 3.86
3229 3659 4.758251 GCAATTGCGGCCCAACCC 62.758 66.667 15.87 0.00 35.99 4.11
3231 3661 2.525381 AATTGCGGCCCAACCCAA 60.525 55.556 8.59 0.17 35.99 4.12
3232 3662 2.878089 AATTGCGGCCCAACCCAAC 61.878 57.895 8.59 0.00 35.99 3.77
3237 3667 1.916738 CGGCCCAACCCAACCTATA 59.083 57.895 0.00 0.00 33.26 1.31
3238 3668 0.256464 CGGCCCAACCCAACCTATAA 59.744 55.000 0.00 0.00 33.26 0.98
3239 3669 1.341187 CGGCCCAACCCAACCTATAAA 60.341 52.381 0.00 0.00 33.26 1.40
3240 3670 2.822697 GGCCCAACCCAACCTATAAAA 58.177 47.619 0.00 0.00 0.00 1.52
3241 3671 3.380393 GGCCCAACCCAACCTATAAAAT 58.620 45.455 0.00 0.00 0.00 1.82
3242 3672 4.548669 GGCCCAACCCAACCTATAAAATA 58.451 43.478 0.00 0.00 0.00 1.40
3243 3673 4.587262 GGCCCAACCCAACCTATAAAATAG 59.413 45.833 0.00 0.00 0.00 1.73
3244 3674 5.205821 GCCCAACCCAACCTATAAAATAGT 58.794 41.667 0.00 0.00 0.00 2.12
3245 3675 6.367161 GCCCAACCCAACCTATAAAATAGTA 58.633 40.000 0.00 0.00 0.00 1.82
3246 3676 6.263842 GCCCAACCCAACCTATAAAATAGTAC 59.736 42.308 0.00 0.00 0.00 2.73
3247 3677 7.580007 CCCAACCCAACCTATAAAATAGTACT 58.420 38.462 0.00 0.00 0.00 2.73
3248 3678 7.718314 CCCAACCCAACCTATAAAATAGTACTC 59.282 40.741 0.00 0.00 0.00 2.59
3249 3679 7.718314 CCAACCCAACCTATAAAATAGTACTCC 59.282 40.741 0.00 0.00 0.00 3.85
3250 3680 7.384524 ACCCAACCTATAAAATAGTACTCCC 57.615 40.000 0.00 0.00 0.00 4.30
3251 3681 7.144430 ACCCAACCTATAAAATAGTACTCCCT 58.856 38.462 0.00 0.00 0.00 4.20
3252 3682 7.291885 ACCCAACCTATAAAATAGTACTCCCTC 59.708 40.741 0.00 0.00 0.00 4.30
3253 3683 7.256583 CCCAACCTATAAAATAGTACTCCCTCC 60.257 44.444 0.00 0.00 0.00 4.30
3254 3684 7.376615 CAACCTATAAAATAGTACTCCCTCCG 58.623 42.308 0.00 0.00 0.00 4.63
3255 3685 6.618501 ACCTATAAAATAGTACTCCCTCCGT 58.381 40.000 0.00 0.00 0.00 4.69
3256 3686 7.071917 ACCTATAAAATAGTACTCCCTCCGTT 58.928 38.462 0.00 0.00 0.00 4.44
3257 3687 7.232330 ACCTATAAAATAGTACTCCCTCCGTTC 59.768 40.741 0.00 0.00 0.00 3.95
3258 3688 4.750021 AAAATAGTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
3259 3689 3.684408 AATAGTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
3260 3690 4.803329 AATAGTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
3261 3691 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
3262 3692 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3263 3693 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3264 3694 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3265 3695 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3266 3696 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3267 3697 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3268 3698 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3269 3699 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3270 3700 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3271 3701 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3272 3702 7.529555 TCCCTCCGTTCCTAAATATAAGTCTA 58.470 38.462 0.00 0.00 0.00 2.59
3273 3703 8.175431 TCCCTCCGTTCCTAAATATAAGTCTAT 58.825 37.037 0.00 0.00 0.00 1.98
3274 3704 9.471702 CCCTCCGTTCCTAAATATAAGTCTATA 57.528 37.037 0.00 0.00 0.00 1.31
3300 3730 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
3301 3731 8.986991 AGTCTTTGTAGAGATTTCACTATGGAT 58.013 33.333 0.00 0.00 0.00 3.41
3302 3732 9.255304 GTCTTTGTAGAGATTTCACTATGGATC 57.745 37.037 0.00 0.00 0.00 3.36
3303 3733 8.981659 TCTTTGTAGAGATTTCACTATGGATCA 58.018 33.333 0.00 0.00 0.00 2.92
3304 3734 9.775854 CTTTGTAGAGATTTCACTATGGATCAT 57.224 33.333 0.00 0.00 0.00 2.45
3356 3786 6.459923 AGTGTAGACTCACTCATTTTTCTCC 58.540 40.000 0.00 0.00 44.07 3.71
3357 3787 5.346281 GTGTAGACTCACTCATTTTTCTCCG 59.654 44.000 0.00 0.00 35.68 4.63
3358 3788 4.608948 AGACTCACTCATTTTTCTCCGT 57.391 40.909 0.00 0.00 0.00 4.69
3359 3789 5.723672 AGACTCACTCATTTTTCTCCGTA 57.276 39.130 0.00 0.00 0.00 4.02
3360 3790 6.287589 AGACTCACTCATTTTTCTCCGTAT 57.712 37.500 0.00 0.00 0.00 3.06
3361 3791 6.102663 AGACTCACTCATTTTTCTCCGTATG 58.897 40.000 0.00 0.00 0.00 2.39
3362 3792 5.794894 ACTCACTCATTTTTCTCCGTATGT 58.205 37.500 0.00 0.00 0.00 2.29
3363 3793 6.931838 ACTCACTCATTTTTCTCCGTATGTA 58.068 36.000 0.00 0.00 0.00 2.29
3364 3794 7.036220 ACTCACTCATTTTTCTCCGTATGTAG 58.964 38.462 0.00 0.00 0.00 2.74
3365 3795 6.931838 TCACTCATTTTTCTCCGTATGTAGT 58.068 36.000 0.00 0.00 0.00 2.73
3366 3796 7.033791 TCACTCATTTTTCTCCGTATGTAGTC 58.966 38.462 0.00 0.00 0.00 2.59
3367 3797 6.255887 CACTCATTTTTCTCCGTATGTAGTCC 59.744 42.308 0.00 0.00 0.00 3.85
3368 3798 5.345702 TCATTTTTCTCCGTATGTAGTCCG 58.654 41.667 0.00 0.00 0.00 4.79
3369 3799 4.789012 TTTTTCTCCGTATGTAGTCCGT 57.211 40.909 0.00 0.00 0.00 4.69
3370 3800 5.895636 TTTTTCTCCGTATGTAGTCCGTA 57.104 39.130 0.00 0.00 0.00 4.02
3371 3801 5.490139 TTTTCTCCGTATGTAGTCCGTAG 57.510 43.478 0.00 0.00 0.00 3.51
3372 3802 3.827008 TCTCCGTATGTAGTCCGTAGT 57.173 47.619 0.00 0.00 0.00 2.73
3373 3803 3.461061 TCTCCGTATGTAGTCCGTAGTG 58.539 50.000 0.00 0.00 0.00 2.74
3374 3804 2.547211 CTCCGTATGTAGTCCGTAGTGG 59.453 54.545 0.00 0.00 40.09 4.00
3387 3817 5.068234 TCCGTAGTGGAATGTCTACAAAG 57.932 43.478 0.00 0.00 46.38 2.77
3388 3818 4.768448 TCCGTAGTGGAATGTCTACAAAGA 59.232 41.667 0.00 0.00 46.38 2.52
3389 3819 4.863131 CCGTAGTGGAATGTCTACAAAGAC 59.137 45.833 0.00 0.00 46.25 3.01
3390 3820 5.336531 CCGTAGTGGAATGTCTACAAAGACT 60.337 44.000 7.04 0.00 46.23 3.24
3391 3821 6.793454 CCGTAGTGGAATGTCTACAAAGACTT 60.793 42.308 7.04 0.00 46.23 3.01
3392 3822 7.576287 CCGTAGTGGAATGTCTACAAAGACTTA 60.576 40.741 7.04 0.00 46.23 2.24
3407 3837 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3408 3838 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3409 3839 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3421 3851 1.794714 ACGGAGGGAGTAGCATTCAT 58.205 50.000 0.00 0.00 0.00 2.57
3424 3854 2.366916 CGGAGGGAGTAGCATTCATTCT 59.633 50.000 0.00 0.00 0.00 2.40
3454 3884 7.153217 TCAATCGAGTATATCTTGCGGATTA 57.847 36.000 0.00 0.00 35.98 1.75
3455 3885 7.599171 TCAATCGAGTATATCTTGCGGATTAA 58.401 34.615 0.00 0.00 35.98 1.40
3456 3886 7.541091 TCAATCGAGTATATCTTGCGGATTAAC 59.459 37.037 0.00 0.00 35.98 2.01
3457 3887 6.321848 TCGAGTATATCTTGCGGATTAACA 57.678 37.500 0.00 0.00 35.98 2.41
3458 3888 6.741109 TCGAGTATATCTTGCGGATTAACAA 58.259 36.000 0.00 0.00 35.98 2.83
3464 3894 9.562583 GTATATCTTGCGGATTAACAAAACAAA 57.437 29.630 0.00 0.00 35.98 2.83
3469 3899 5.833082 TGCGGATTAACAAAACAAAAGCTA 58.167 33.333 0.00 0.00 0.00 3.32
3486 3916 9.692325 ACAAAAGCTATGATCTAGAATTCCTTT 57.308 29.630 0.65 0.00 0.00 3.11
3514 4090 2.223572 CGCCAAATTTATGTGGAGCTCC 60.224 50.000 26.78 26.78 37.03 4.70
3549 4125 1.235724 GTGGAGTTAAGTGTGGGTGC 58.764 55.000 0.00 0.00 0.00 5.01
3564 4140 3.769300 GTGGGTGCTGATCCCTTTTAATT 59.231 43.478 8.58 0.00 44.84 1.40
3667 4243 6.401796 GCAATGATTTGGAATGCTCACTTTTC 60.402 38.462 0.00 0.00 34.29 2.29
3694 4270 3.419264 TTTGCATGTATGAATCACGGC 57.581 42.857 0.00 0.00 0.00 5.68
3701 4277 1.063469 GTATGAATCACGGCGGTTTGG 59.937 52.381 13.24 0.00 0.00 3.28
3780 4356 5.067954 TGATAAATCACATGGATGCTCTGG 58.932 41.667 0.00 0.00 36.02 3.86
3801 4377 7.497595 TCTGGTATATGCTACTTCATTCGTTT 58.502 34.615 0.00 0.00 0.00 3.60
3805 4381 8.223769 GGTATATGCTACTTCATTCGTTTCATG 58.776 37.037 0.00 0.00 0.00 3.07
3823 4399 2.719531 TGTTAGTGTCCTGGCACAAA 57.280 45.000 18.81 7.69 41.52 2.83
3857 4433 6.117488 GGAACGGAGGGAGTATTTAATTCAA 58.883 40.000 0.00 0.00 0.00 2.69
3863 4439 7.390440 CGGAGGGAGTATTTAATTCAATATGCA 59.610 37.037 0.00 0.00 0.00 3.96
3864 4440 9.247861 GGAGGGAGTATTTAATTCAATATGCAT 57.752 33.333 3.79 3.79 0.00 3.96
3895 4471 2.027385 GAGCCCTCCCATTCAATTGAC 58.973 52.381 7.89 0.00 0.00 3.18
3932 4508 5.336372 GGATTTGGTTCATGATTTTGACCGA 60.336 40.000 8.60 4.52 0.00 4.69
4012 4588 8.410141 TGATTCAGTATTTTTGAACGGTTTCTT 58.590 29.630 0.00 0.00 37.38 2.52
4102 4679 5.843673 AACACCAACATGTGACATTGTAA 57.156 34.783 0.00 0.00 39.57 2.41
4127 4705 5.633601 CACAATATAGTACATACAGCCACCG 59.366 44.000 0.00 0.00 0.00 4.94
4129 4707 6.210784 ACAATATAGTACATACAGCCACCGAT 59.789 38.462 0.00 0.00 0.00 4.18
4141 4719 1.666888 GCCACCGATGCAAGAAACTTG 60.667 52.381 7.07 7.07 0.00 3.16
4145 4723 0.454957 CGATGCAAGAAACTTGCCCG 60.455 55.000 26.21 24.06 44.32 6.13
4170 4748 5.992217 CCTAAGTATTGGTGGATTAGCAGAC 59.008 44.000 0.00 0.00 38.18 3.51
4182 4760 5.181748 GGATTAGCAGACAACACAGAATCT 58.818 41.667 0.00 0.00 0.00 2.40
4188 4766 4.321718 CAGACAACACAGAATCTCACCAT 58.678 43.478 0.00 0.00 0.00 3.55
4213 4791 1.176619 AAGCCCACTAAAACACCGCC 61.177 55.000 0.00 0.00 0.00 6.13
4216 4794 1.883209 GCCCACTAAAACACCGCCTTA 60.883 52.381 0.00 0.00 0.00 2.69
4245 4825 3.259374 ACACTTCATCATCTTCCTCACGT 59.741 43.478 0.00 0.00 0.00 4.49
4361 4941 7.544915 GTCCTAGTTAGATGTGTTTGGAGTTAC 59.455 40.741 0.00 0.00 0.00 2.50
4364 4944 3.764237 AGATGTGTTTGGAGTTACGGT 57.236 42.857 0.00 0.00 0.00 4.83
4670 5250 6.550854 TCAAGAATGACTTTGGGACAGATTTT 59.449 34.615 0.00 0.00 42.39 1.82
4757 5337 2.045536 GACCCCAAGCAGGCAGAG 60.046 66.667 0.00 0.00 35.39 3.35
4762 5342 2.031516 CCAAGCAGGCAGAGACACG 61.032 63.158 0.00 0.00 0.00 4.49
4805 5385 6.640907 CCCTTAAAGTTTAGTGACACAAATGC 59.359 38.462 8.59 0.00 0.00 3.56
4850 5430 7.769970 TGCACATACAAGATCATCACTGATTTA 59.230 33.333 0.00 0.00 42.27 1.40
5142 5722 9.114965 CCAAAGATAATTAGACATACGTAGTCG 57.885 37.037 15.04 4.36 43.93 4.18
5143 5723 9.114965 CAAAGATAATTAGACATACGTAGTCGG 57.885 37.037 15.04 3.22 43.93 4.79
5144 5724 7.976135 AGATAATTAGACATACGTAGTCGGT 57.024 36.000 15.04 5.84 43.93 4.69
5145 5725 9.494271 AAGATAATTAGACATACGTAGTCGGTA 57.506 33.333 15.04 8.37 43.93 4.02
5187 5767 0.179004 AAACCAACATCAGTCGGCCA 60.179 50.000 2.24 0.00 0.00 5.36
5646 6228 4.133820 CCTGCACGTCCATGGATAAATTA 58.866 43.478 19.62 2.67 0.00 1.40
5692 6276 4.688413 CGAGGCAATTAAGGAAGAGATAGC 59.312 45.833 0.00 0.00 0.00 2.97
5750 6334 3.144506 CCTGATCATGAATGCTGGGTAC 58.855 50.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.619316 CATCTCATTTTCTATTCCTACTCGTAG 57.381 37.037 0.00 0.00 0.00 3.51
9 10 9.132923 ACATCTCATTTTCTATTCCTACTCGTA 57.867 33.333 0.00 0.00 0.00 3.43
10 11 8.012957 ACATCTCATTTTCTATTCCTACTCGT 57.987 34.615 0.00 0.00 0.00 4.18
11 12 7.596995 GGACATCTCATTTTCTATTCCTACTCG 59.403 40.741 0.00 0.00 0.00 4.18
12 13 8.646900 AGGACATCTCATTTTCTATTCCTACTC 58.353 37.037 0.00 0.00 0.00 2.59
13 14 8.560124 AGGACATCTCATTTTCTATTCCTACT 57.440 34.615 0.00 0.00 0.00 2.57
14 15 9.620259 AAAGGACATCTCATTTTCTATTCCTAC 57.380 33.333 0.00 0.00 30.59 3.18
15 16 9.618890 CAAAGGACATCTCATTTTCTATTCCTA 57.381 33.333 0.00 0.00 27.74 2.94
16 17 8.112183 ACAAAGGACATCTCATTTTCTATTCCT 58.888 33.333 0.00 0.00 27.74 3.36
17 18 8.286191 ACAAAGGACATCTCATTTTCTATTCC 57.714 34.615 0.00 0.00 27.74 3.01
22 23 8.912988 TGTAAAACAAAGGACATCTCATTTTCT 58.087 29.630 0.00 0.00 27.74 2.52
23 24 9.696917 ATGTAAAACAAAGGACATCTCATTTTC 57.303 29.630 0.00 0.00 27.74 2.29
24 25 9.696917 GATGTAAAACAAAGGACATCTCATTTT 57.303 29.630 6.61 0.00 43.12 1.82
25 26 8.859090 TGATGTAAAACAAAGGACATCTCATTT 58.141 29.630 13.33 0.00 45.48 2.32
26 27 8.408043 TGATGTAAAACAAAGGACATCTCATT 57.592 30.769 13.33 0.00 45.48 2.57
27 28 8.585471 ATGATGTAAAACAAAGGACATCTCAT 57.415 30.769 13.33 1.11 45.48 2.90
28 29 9.166173 CTATGATGTAAAACAAAGGACATCTCA 57.834 33.333 13.33 0.00 45.48 3.27
29 30 8.616076 CCTATGATGTAAAACAAAGGACATCTC 58.384 37.037 13.33 0.00 45.48 2.75
30 31 8.328758 TCCTATGATGTAAAACAAAGGACATCT 58.671 33.333 13.33 4.18 45.48 2.90
31 32 8.506168 TCCTATGATGTAAAACAAAGGACATC 57.494 34.615 6.86 6.86 45.48 3.06
32 33 9.479549 AATCCTATGATGTAAAACAAAGGACAT 57.520 29.630 0.00 0.00 33.06 3.06
33 34 8.877864 AATCCTATGATGTAAAACAAAGGACA 57.122 30.769 0.00 0.00 33.06 4.02
58 59 9.793259 AACATTAGTCTAGACTCAATGGAAAAA 57.207 29.630 31.66 20.96 42.54 1.94
59 60 9.793259 AAACATTAGTCTAGACTCAATGGAAAA 57.207 29.630 31.66 21.44 42.54 2.29
67 68 9.702253 AGGAGAATAAACATTAGTCTAGACTCA 57.298 33.333 28.42 18.72 42.54 3.41
81 82 9.177608 CCTTCACATTTCATAGGAGAATAAACA 57.822 33.333 0.00 0.00 0.00 2.83
82 83 9.396022 TCCTTCACATTTCATAGGAGAATAAAC 57.604 33.333 0.00 0.00 31.60 2.01
86 87 8.381636 CCTATCCTTCACATTTCATAGGAGAAT 58.618 37.037 0.00 0.00 38.33 2.40
87 88 7.568738 TCCTATCCTTCACATTTCATAGGAGAA 59.431 37.037 2.01 0.00 37.85 2.87
88 89 7.075797 TCCTATCCTTCACATTTCATAGGAGA 58.924 38.462 2.01 0.00 37.85 3.71
89 90 7.308450 TCCTATCCTTCACATTTCATAGGAG 57.692 40.000 2.01 0.00 37.85 3.69
90 91 7.568738 TCTTCCTATCCTTCACATTTCATAGGA 59.431 37.037 2.01 2.01 39.98 2.94
91 92 7.739825 TCTTCCTATCCTTCACATTTCATAGG 58.260 38.462 0.00 0.00 35.93 2.57
92 93 9.790344 ATTCTTCCTATCCTTCACATTTCATAG 57.210 33.333 0.00 0.00 0.00 2.23
94 95 9.129532 GAATTCTTCCTATCCTTCACATTTCAT 57.870 33.333 0.00 0.00 0.00 2.57
95 96 7.557719 GGAATTCTTCCTATCCTTCACATTTCA 59.442 37.037 5.23 0.00 46.57 2.69
96 97 7.935520 GGAATTCTTCCTATCCTTCACATTTC 58.064 38.462 5.23 0.00 46.57 2.17
97 98 7.888250 GGAATTCTTCCTATCCTTCACATTT 57.112 36.000 5.23 0.00 46.57 2.32
133 134 9.454859 CTCTTTGGTTTGTAGGAATAGAATCTT 57.545 33.333 0.00 0.00 0.00 2.40
134 135 7.554476 GCTCTTTGGTTTGTAGGAATAGAATCT 59.446 37.037 0.00 0.00 0.00 2.40
135 136 7.336931 TGCTCTTTGGTTTGTAGGAATAGAATC 59.663 37.037 0.00 0.00 0.00 2.52
136 137 7.175104 TGCTCTTTGGTTTGTAGGAATAGAAT 58.825 34.615 0.00 0.00 0.00 2.40
137 138 6.539173 TGCTCTTTGGTTTGTAGGAATAGAA 58.461 36.000 0.00 0.00 0.00 2.10
138 139 6.121776 TGCTCTTTGGTTTGTAGGAATAGA 57.878 37.500 0.00 0.00 0.00 1.98
139 140 5.940470 ACTGCTCTTTGGTTTGTAGGAATAG 59.060 40.000 0.00 0.00 0.00 1.73
140 141 5.876357 ACTGCTCTTTGGTTTGTAGGAATA 58.124 37.500 0.00 0.00 0.00 1.75
141 142 4.729868 ACTGCTCTTTGGTTTGTAGGAAT 58.270 39.130 0.00 0.00 0.00 3.01
142 143 4.164843 ACTGCTCTTTGGTTTGTAGGAA 57.835 40.909 0.00 0.00 0.00 3.36
143 144 3.857157 ACTGCTCTTTGGTTTGTAGGA 57.143 42.857 0.00 0.00 0.00 2.94
144 145 5.763204 TCTTTACTGCTCTTTGGTTTGTAGG 59.237 40.000 0.00 0.00 0.00 3.18
145 146 6.861065 TCTTTACTGCTCTTTGGTTTGTAG 57.139 37.500 0.00 0.00 0.00 2.74
146 147 7.633193 TTTCTTTACTGCTCTTTGGTTTGTA 57.367 32.000 0.00 0.00 0.00 2.41
147 148 6.524101 TTTCTTTACTGCTCTTTGGTTTGT 57.476 33.333 0.00 0.00 0.00 2.83
148 149 8.424274 AAATTTCTTTACTGCTCTTTGGTTTG 57.576 30.769 0.00 0.00 0.00 2.93
149 150 9.448438 AAAAATTTCTTTACTGCTCTTTGGTTT 57.552 25.926 0.00 0.00 0.00 3.27
150 151 9.098355 GAAAAATTTCTTTACTGCTCTTTGGTT 57.902 29.630 0.00 0.00 34.41 3.67
151 152 7.710907 GGAAAAATTTCTTTACTGCTCTTTGGT 59.289 33.333 5.91 0.00 37.35 3.67
152 153 7.928167 AGGAAAAATTTCTTTACTGCTCTTTGG 59.072 33.333 5.91 0.00 37.35 3.28
153 154 8.877808 AGGAAAAATTTCTTTACTGCTCTTTG 57.122 30.769 5.91 0.00 37.35 2.77
198 199 9.898152 TGGTTTGAAGGAATTTTGTAAAGATTT 57.102 25.926 0.00 0.00 0.00 2.17
199 200 9.898152 TTGGTTTGAAGGAATTTTGTAAAGATT 57.102 25.926 0.00 0.00 0.00 2.40
200 201 9.898152 TTTGGTTTGAAGGAATTTTGTAAAGAT 57.102 25.926 0.00 0.00 0.00 2.40
201 202 9.377312 CTTTGGTTTGAAGGAATTTTGTAAAGA 57.623 29.630 0.00 0.00 0.00 2.52
202 203 8.611757 CCTTTGGTTTGAAGGAATTTTGTAAAG 58.388 33.333 0.00 0.00 45.25 1.85
203 204 8.499403 CCTTTGGTTTGAAGGAATTTTGTAAA 57.501 30.769 0.00 0.00 45.25 2.01
214 215 0.598065 CCGCTCCTTTGGTTTGAAGG 59.402 55.000 0.00 0.00 44.06 3.46
215 216 1.604604 TCCGCTCCTTTGGTTTGAAG 58.395 50.000 0.00 0.00 0.00 3.02
216 217 1.885887 CATCCGCTCCTTTGGTTTGAA 59.114 47.619 0.00 0.00 0.00 2.69
217 218 1.533625 CATCCGCTCCTTTGGTTTGA 58.466 50.000 0.00 0.00 0.00 2.69
218 219 0.527565 CCATCCGCTCCTTTGGTTTG 59.472 55.000 0.00 0.00 0.00 2.93
219 220 0.404040 TCCATCCGCTCCTTTGGTTT 59.596 50.000 0.00 0.00 0.00 3.27
220 221 0.625849 ATCCATCCGCTCCTTTGGTT 59.374 50.000 0.00 0.00 0.00 3.67
221 222 0.107017 CATCCATCCGCTCCTTTGGT 60.107 55.000 0.00 0.00 0.00 3.67
222 223 0.820891 CCATCCATCCGCTCCTTTGG 60.821 60.000 0.00 0.00 0.00 3.28
223 224 0.181114 TCCATCCATCCGCTCCTTTG 59.819 55.000 0.00 0.00 0.00 2.77
224 225 1.143813 ATCCATCCATCCGCTCCTTT 58.856 50.000 0.00 0.00 0.00 3.11
225 226 1.143813 AATCCATCCATCCGCTCCTT 58.856 50.000 0.00 0.00 0.00 3.36
226 227 0.399454 CAATCCATCCATCCGCTCCT 59.601 55.000 0.00 0.00 0.00 3.69
227 228 0.607489 CCAATCCATCCATCCGCTCC 60.607 60.000 0.00 0.00 0.00 4.70
228 229 0.607489 CCCAATCCATCCATCCGCTC 60.607 60.000 0.00 0.00 0.00 5.03
229 230 1.457604 CCCAATCCATCCATCCGCT 59.542 57.895 0.00 0.00 0.00 5.52
230 231 1.604593 CCCCAATCCATCCATCCGC 60.605 63.158 0.00 0.00 0.00 5.54
231 232 1.075482 CCCCCAATCCATCCATCCG 59.925 63.158 0.00 0.00 0.00 4.18
232 233 0.407139 CTCCCCCAATCCATCCATCC 59.593 60.000 0.00 0.00 0.00 3.51
284 285 3.384467 TGCTTTTCCTTCCAAGTTCCAAG 59.616 43.478 0.00 0.00 0.00 3.61
285 286 3.370104 TGCTTTTCCTTCCAAGTTCCAA 58.630 40.909 0.00 0.00 0.00 3.53
286 287 3.025322 TGCTTTTCCTTCCAAGTTCCA 57.975 42.857 0.00 0.00 0.00 3.53
287 288 3.321968 ACATGCTTTTCCTTCCAAGTTCC 59.678 43.478 0.00 0.00 0.00 3.62
288 289 4.279420 AGACATGCTTTTCCTTCCAAGTTC 59.721 41.667 0.00 0.00 0.00 3.01
289 290 4.218312 AGACATGCTTTTCCTTCCAAGTT 58.782 39.130 0.00 0.00 0.00 2.66
290 291 3.823304 GAGACATGCTTTTCCTTCCAAGT 59.177 43.478 0.00 0.00 0.00 3.16
304 305 2.557924 TGTCCCAATTTGTGAGACATGC 59.442 45.455 9.02 0.00 0.00 4.06
317 318 3.074412 GTCACGTCTGATTTGTCCCAAT 58.926 45.455 0.00 0.00 0.00 3.16
334 335 0.323629 TGGGATTTCACGAGGGTCAC 59.676 55.000 0.00 0.00 0.00 3.67
356 357 1.003003 GCTGTCCTCTCTTTCCTTGCT 59.997 52.381 0.00 0.00 0.00 3.91
361 364 0.612744 AGCTGCTGTCCTCTCTTTCC 59.387 55.000 0.00 0.00 0.00 3.13
468 478 3.788766 GCACAAGGCGTGGCGTAG 61.789 66.667 5.22 0.00 46.45 3.51
580 605 4.570874 GGGCATTCGGGAGGAGGC 62.571 72.222 0.00 0.00 0.00 4.70
990 1018 3.739613 GCCCCCATTTCCCCGTCT 61.740 66.667 0.00 0.00 0.00 4.18
1381 1425 5.523552 CCAGTCGATCACAAACTATGCATAA 59.476 40.000 8.00 0.00 0.00 1.90
1386 1430 5.444613 CGTTTCCAGTCGATCACAAACTATG 60.445 44.000 0.00 0.00 0.00 2.23
1437 1481 5.767816 TCCTTCTTAGTGAAAAGGCAAAC 57.232 39.130 0.00 0.00 39.55 2.93
1491 1551 3.799753 CCGCATGTGGCTACTGAC 58.200 61.111 13.39 0.00 41.67 3.51
1650 1979 7.601705 ATTTCATTCAGGAAAGTTTGGAGAA 57.398 32.000 0.00 0.00 39.88 2.87
1790 2129 6.028146 TGTGGAGATTGAATGGTGAAATTG 57.972 37.500 0.00 0.00 0.00 2.32
1824 2174 6.120220 GGCCATGTTAGACAGGTAAGTAAAT 58.880 40.000 0.00 0.00 0.00 1.40
1887 2237 1.082690 GCTACTCTTTGCAGGTCAGC 58.917 55.000 0.00 0.00 0.00 4.26
2043 2395 5.126061 TCTGTAGGTTAGGATCACGGTTAAC 59.874 44.000 0.00 0.00 0.00 2.01
2091 2443 7.547370 CGCTCTTATATTTCTTTATGGAGGGAG 59.453 40.741 0.00 0.00 33.23 4.30
2092 2444 7.016268 ACGCTCTTATATTTCTTTATGGAGGGA 59.984 37.037 0.00 0.00 34.22 4.20
2093 2445 7.162082 ACGCTCTTATATTTCTTTATGGAGGG 58.838 38.462 0.00 0.00 35.06 4.30
2094 2446 8.608844 AACGCTCTTATATTTCTTTATGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
2122 2474 6.403615 CGTTTAGATCACTTAGCGTTTGATC 58.596 40.000 10.79 10.79 44.06 2.92
2123 2475 5.220416 GCGTTTAGATCACTTAGCGTTTGAT 60.220 40.000 0.00 0.00 33.43 2.57
2124 2476 4.090930 GCGTTTAGATCACTTAGCGTTTGA 59.909 41.667 0.00 0.00 33.43 2.69
2125 2477 4.091509 AGCGTTTAGATCACTTAGCGTTTG 59.908 41.667 0.00 0.00 33.43 2.93
2126 2478 4.243270 AGCGTTTAGATCACTTAGCGTTT 58.757 39.130 0.00 0.00 33.43 3.60
2127 2479 3.846360 AGCGTTTAGATCACTTAGCGTT 58.154 40.909 0.00 0.00 33.43 4.84
2128 2480 3.128938 AGAGCGTTTAGATCACTTAGCGT 59.871 43.478 0.00 0.00 37.82 5.07
2129 2481 3.696898 AGAGCGTTTAGATCACTTAGCG 58.303 45.455 0.00 0.00 37.82 4.26
2130 2482 8.973835 ATATAAGAGCGTTTAGATCACTTAGC 57.026 34.615 0.00 0.00 37.82 3.09
2139 2491 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2140 2492 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2141 2493 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2142 2494 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2143 2495 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2144 2496 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2145 2497 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2146 2498 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2147 2499 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2148 2500 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2149 2501 9.640963 CATACTCCCTCCGTAAAGAAATATAAG 57.359 37.037 0.00 0.00 0.00 1.73
2150 2502 9.151177 ACATACTCCCTCCGTAAAGAAATATAA 57.849 33.333 0.00 0.00 0.00 0.98
2151 2503 8.716674 ACATACTCCCTCCGTAAAGAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
2152 2504 7.613551 ACATACTCCCTCCGTAAAGAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
2153 2505 8.537728 TTACATACTCCCTCCGTAAAGAAATA 57.462 34.615 0.00 0.00 0.00 1.40
2154 2506 5.952347 ACATACTCCCTCCGTAAAGAAAT 57.048 39.130 0.00 0.00 0.00 2.17
2155 2507 6.855763 TTACATACTCCCTCCGTAAAGAAA 57.144 37.500 0.00 0.00 0.00 2.52
2156 2508 8.582437 CATATTACATACTCCCTCCGTAAAGAA 58.418 37.037 0.00 0.00 0.00 2.52
2157 2509 7.177921 CCATATTACATACTCCCTCCGTAAAGA 59.822 40.741 0.00 0.00 0.00 2.52
2158 2510 7.177921 TCCATATTACATACTCCCTCCGTAAAG 59.822 40.741 0.00 0.00 0.00 1.85
2159 2511 7.011994 TCCATATTACATACTCCCTCCGTAAA 58.988 38.462 0.00 0.00 0.00 2.01
2160 2512 6.554784 TCCATATTACATACTCCCTCCGTAA 58.445 40.000 0.00 0.00 0.00 3.18
2161 2513 6.143551 TCCATATTACATACTCCCTCCGTA 57.856 41.667 0.00 0.00 0.00 4.02
2162 2514 5.006896 TCCATATTACATACTCCCTCCGT 57.993 43.478 0.00 0.00 0.00 4.69
2163 2515 5.422331 ACATCCATATTACATACTCCCTCCG 59.578 44.000 0.00 0.00 0.00 4.63
2164 2516 6.875972 ACATCCATATTACATACTCCCTCC 57.124 41.667 0.00 0.00 0.00 4.30
2167 2519 8.947115 GCTTTTACATCCATATTACATACTCCC 58.053 37.037 0.00 0.00 0.00 4.30
2168 2520 9.726438 AGCTTTTACATCCATATTACATACTCC 57.274 33.333 0.00 0.00 0.00 3.85
2371 2753 8.938906 GCCATCATGTTTTCTGTTATCAAATTT 58.061 29.630 0.00 0.00 0.00 1.82
2469 2851 3.589988 CACGACTTTGATTCTGCTAGGT 58.410 45.455 0.00 0.00 0.00 3.08
2561 2980 1.747709 CCATGGTTCTCTCCTTGCTG 58.252 55.000 2.57 0.00 33.18 4.41
2628 3047 2.915463 CAAGTTAGGATCACGACACGTC 59.085 50.000 0.00 0.00 38.32 4.34
2629 3048 2.925306 GCAAGTTAGGATCACGACACGT 60.925 50.000 0.00 0.00 42.36 4.49
2630 3049 1.654105 GCAAGTTAGGATCACGACACG 59.346 52.381 0.00 0.00 0.00 4.49
2632 3051 2.353704 CCAGCAAGTTAGGATCACGACA 60.354 50.000 0.00 0.00 0.00 4.35
2633 3052 2.094182 TCCAGCAAGTTAGGATCACGAC 60.094 50.000 0.00 0.00 0.00 4.34
2634 3053 2.176045 TCCAGCAAGTTAGGATCACGA 58.824 47.619 0.00 0.00 0.00 4.35
2636 3055 4.187694 CTCTTCCAGCAAGTTAGGATCAC 58.812 47.826 0.00 0.00 33.27 3.06
2637 3056 3.198635 CCTCTTCCAGCAAGTTAGGATCA 59.801 47.826 0.00 0.00 30.49 2.92
2639 3058 2.092699 GCCTCTTCCAGCAAGTTAGGAT 60.093 50.000 0.00 0.00 30.49 3.24
2640 3059 1.279271 GCCTCTTCCAGCAAGTTAGGA 59.721 52.381 0.00 0.00 30.49 2.94
2641 3060 1.743996 GCCTCTTCCAGCAAGTTAGG 58.256 55.000 0.00 0.00 31.66 2.69
2642 3061 1.363744 CGCCTCTTCCAGCAAGTTAG 58.636 55.000 0.00 0.00 33.27 2.34
2643 3062 0.036388 CCGCCTCTTCCAGCAAGTTA 60.036 55.000 0.00 0.00 33.27 2.24
2644 3063 1.302832 CCGCCTCTTCCAGCAAGTT 60.303 57.895 0.00 0.00 33.27 2.66
2651 3072 4.020617 CCAGTGCCGCCTCTTCCA 62.021 66.667 0.00 0.00 0.00 3.53
2669 3090 1.392168 CCGTTAACATACGTGCCACTG 59.608 52.381 6.39 0.00 39.81 3.66
2677 3098 3.913763 TCGTTTCTGTCCGTTAACATACG 59.086 43.478 6.39 2.68 41.06 3.06
2691 3112 0.910513 CGAGAGCGATGTCGTTTCTG 59.089 55.000 12.49 5.72 42.22 3.02
2763 3185 4.141041 TCTCCCCCAAATCTTTTGAGTCAA 60.141 41.667 0.08 0.08 0.00 3.18
2776 3198 0.045623 TAGCCATCCTCTCCCCCAAA 59.954 55.000 0.00 0.00 0.00 3.28
2982 3412 3.830192 CAAATGGGCCGCTGCTCC 61.830 66.667 0.00 0.00 37.06 4.70
3076 3506 4.694339 GATTGGTCTAACTAACGGAGCAT 58.306 43.478 0.00 0.00 37.34 3.79
3137 3567 6.986904 ACTAAACAGTAAAATGGAGCTAGC 57.013 37.500 6.62 6.62 0.00 3.42
3170 3600 3.322466 CCTCACGGGCTCAAGGGT 61.322 66.667 0.00 0.00 0.00 4.34
3229 3659 7.015001 ACGGAGGGAGTACTATTTTATAGGTTG 59.985 40.741 0.00 0.00 0.00 3.77
3231 3661 6.618501 ACGGAGGGAGTACTATTTTATAGGT 58.381 40.000 0.00 0.00 0.00 3.08
3232 3662 7.309683 GGAACGGAGGGAGTACTATTTTATAGG 60.310 44.444 0.00 0.00 0.00 2.57
3233 3663 7.450944 AGGAACGGAGGGAGTACTATTTTATAG 59.549 40.741 0.00 0.00 0.00 1.31
3234 3664 7.300658 AGGAACGGAGGGAGTACTATTTTATA 58.699 38.462 0.00 0.00 0.00 0.98
3237 3667 4.359996 AGGAACGGAGGGAGTACTATTTT 58.640 43.478 0.00 0.00 0.00 1.82
3238 3668 3.991683 AGGAACGGAGGGAGTACTATTT 58.008 45.455 0.00 0.00 0.00 1.40
3239 3669 3.684408 AGGAACGGAGGGAGTACTATT 57.316 47.619 0.00 0.00 0.00 1.73
3240 3670 4.803329 TTAGGAACGGAGGGAGTACTAT 57.197 45.455 0.00 0.00 0.00 2.12
3241 3671 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
3242 3672 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
3243 3673 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3244 3674 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3245 3675 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3246 3676 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3247 3677 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3248 3678 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3274 3704 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
3275 3705 8.367660 TCCATAGTGAAATCTCTACAAAGACT 57.632 34.615 0.00 0.00 0.00 3.24
3276 3706 9.255304 GATCCATAGTGAAATCTCTACAAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
3277 3707 8.981659 TGATCCATAGTGAAATCTCTACAAAGA 58.018 33.333 0.00 0.00 0.00 2.52
3278 3708 9.775854 ATGATCCATAGTGAAATCTCTACAAAG 57.224 33.333 0.00 0.00 0.00 2.77
3333 3763 5.346281 CGGAGAAAAATGAGTGAGTCTACAC 59.654 44.000 0.00 0.00 40.60 2.90
3334 3764 5.010719 ACGGAGAAAAATGAGTGAGTCTACA 59.989 40.000 0.00 0.00 0.00 2.74
3335 3765 5.471257 ACGGAGAAAAATGAGTGAGTCTAC 58.529 41.667 0.00 0.00 0.00 2.59
3336 3766 5.723672 ACGGAGAAAAATGAGTGAGTCTA 57.276 39.130 0.00 0.00 0.00 2.59
3337 3767 4.608948 ACGGAGAAAAATGAGTGAGTCT 57.391 40.909 0.00 0.00 0.00 3.24
3338 3768 5.869888 ACATACGGAGAAAAATGAGTGAGTC 59.130 40.000 0.00 0.00 0.00 3.36
3339 3769 5.794894 ACATACGGAGAAAAATGAGTGAGT 58.205 37.500 0.00 0.00 0.00 3.41
3340 3770 7.036220 ACTACATACGGAGAAAAATGAGTGAG 58.964 38.462 0.00 0.00 0.00 3.51
3341 3771 6.931838 ACTACATACGGAGAAAAATGAGTGA 58.068 36.000 0.00 0.00 0.00 3.41
3342 3772 6.255887 GGACTACATACGGAGAAAAATGAGTG 59.744 42.308 0.00 0.00 0.00 3.51
3343 3773 6.338937 GGACTACATACGGAGAAAAATGAGT 58.661 40.000 0.00 0.00 0.00 3.41
3344 3774 5.459107 CGGACTACATACGGAGAAAAATGAG 59.541 44.000 0.00 0.00 0.00 2.90
3345 3775 5.105635 ACGGACTACATACGGAGAAAAATGA 60.106 40.000 0.00 0.00 0.00 2.57
3346 3776 5.107133 ACGGACTACATACGGAGAAAAATG 58.893 41.667 0.00 0.00 0.00 2.32
3347 3777 5.334724 ACGGACTACATACGGAGAAAAAT 57.665 39.130 0.00 0.00 0.00 1.82
3348 3778 4.789012 ACGGACTACATACGGAGAAAAA 57.211 40.909 0.00 0.00 0.00 1.94
3349 3779 4.943705 ACTACGGACTACATACGGAGAAAA 59.056 41.667 0.00 0.00 40.92 2.29
3350 3780 4.333649 CACTACGGACTACATACGGAGAAA 59.666 45.833 0.00 0.00 40.92 2.52
3351 3781 3.873361 CACTACGGACTACATACGGAGAA 59.127 47.826 0.00 0.00 40.92 2.87
3352 3782 3.461061 CACTACGGACTACATACGGAGA 58.539 50.000 0.00 0.00 40.92 3.71
3353 3783 2.547211 CCACTACGGACTACATACGGAG 59.453 54.545 0.00 0.00 43.89 4.63
3354 3784 2.170397 TCCACTACGGACTACATACGGA 59.830 50.000 0.00 0.00 39.64 4.69
3355 3785 2.564771 TCCACTACGGACTACATACGG 58.435 52.381 0.00 0.00 39.64 4.02
3356 3786 4.036027 ACATTCCACTACGGACTACATACG 59.964 45.833 0.00 0.00 46.36 3.06
3357 3787 5.298777 AGACATTCCACTACGGACTACATAC 59.701 44.000 0.00 0.00 46.36 2.39
3358 3788 5.443283 AGACATTCCACTACGGACTACATA 58.557 41.667 0.00 0.00 46.36 2.29
3359 3789 4.279145 AGACATTCCACTACGGACTACAT 58.721 43.478 0.00 0.00 46.36 2.29
3360 3790 3.693807 AGACATTCCACTACGGACTACA 58.306 45.455 0.00 0.00 46.36 2.74
3361 3791 4.637534 TGTAGACATTCCACTACGGACTAC 59.362 45.833 0.00 0.00 46.36 2.73
3362 3792 4.847198 TGTAGACATTCCACTACGGACTA 58.153 43.478 0.00 0.00 46.36 2.59
3363 3793 3.693807 TGTAGACATTCCACTACGGACT 58.306 45.455 0.00 0.00 46.36 3.85
3364 3794 4.445452 TTGTAGACATTCCACTACGGAC 57.555 45.455 0.00 0.00 46.36 4.79
3365 3795 4.768448 TCTTTGTAGACATTCCACTACGGA 59.232 41.667 0.00 0.00 44.40 4.69
3366 3796 5.068234 TCTTTGTAGACATTCCACTACGG 57.932 43.478 0.00 0.00 40.98 4.02
3382 3812 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3383 3813 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3384 3814 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3385 3815 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3386 3816 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3387 3817 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3388 3818 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3389 3819 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3390 3820 6.210185 GCTACTCCCTCCGTTCCTAAATATAA 59.790 42.308 0.00 0.00 0.00 0.98
3391 3821 5.713861 GCTACTCCCTCCGTTCCTAAATATA 59.286 44.000 0.00 0.00 0.00 0.86
3392 3822 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
3393 3823 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
3394 3824 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
3395 3825 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
3396 3826 1.006281 TGCTACTCCCTCCGTTCCTAA 59.994 52.381 0.00 0.00 0.00 2.69
3397 3827 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94
3398 3828 0.032017 ATGCTACTCCCTCCGTTCCT 60.032 55.000 0.00 0.00 0.00 3.36
3399 3829 0.831307 AATGCTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
3400 3830 1.480954 TGAATGCTACTCCCTCCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
3401 3831 1.568504 TGAATGCTACTCCCTCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
3402 3832 1.794714 ATGAATGCTACTCCCTCCGT 58.205 50.000 0.00 0.00 0.00 4.69
3403 3833 2.366916 AGAATGAATGCTACTCCCTCCG 59.633 50.000 0.00 0.00 0.00 4.63
3404 3834 4.559704 CGTAGAATGAATGCTACTCCCTCC 60.560 50.000 6.84 0.00 35.88 4.30
3405 3835 4.551388 CGTAGAATGAATGCTACTCCCTC 58.449 47.826 6.84 0.00 35.88 4.30
3406 3836 3.322254 CCGTAGAATGAATGCTACTCCCT 59.678 47.826 6.84 0.00 35.88 4.20
3407 3837 3.321111 TCCGTAGAATGAATGCTACTCCC 59.679 47.826 6.84 0.00 35.88 4.30
3408 3838 4.585955 TCCGTAGAATGAATGCTACTCC 57.414 45.455 6.84 0.00 35.88 3.85
3409 3839 5.773575 TGATCCGTAGAATGAATGCTACTC 58.226 41.667 6.84 0.00 35.88 2.59
3421 3851 8.451748 CAAGATATACTCGATTGATCCGTAGAA 58.548 37.037 0.00 0.00 0.00 2.10
3424 3854 6.552629 GCAAGATATACTCGATTGATCCGTA 58.447 40.000 0.00 0.00 0.00 4.02
3458 3888 9.692325 AGGAATTCTAGATCATAGCTTTTGTTT 57.308 29.630 5.23 0.00 0.00 2.83
3469 3899 7.012421 GCGGTTACAAAAGGAATTCTAGATCAT 59.988 37.037 5.23 0.00 0.00 2.45
3482 3912 5.929415 ACATAAATTTGGCGGTTACAAAAGG 59.071 36.000 0.00 0.00 40.74 3.11
3486 3916 4.523173 TCCACATAAATTTGGCGGTTACAA 59.477 37.500 0.00 0.00 32.37 2.41
3514 4090 9.846248 CTTAACTCCACATAAATCTCTTTTTGG 57.154 33.333 0.00 0.00 30.34 3.28
3520 4096 7.106239 CCACACTTAACTCCACATAAATCTCT 58.894 38.462 0.00 0.00 0.00 3.10
3549 4125 6.155049 ACATCCAACCAATTAAAAGGGATCAG 59.845 38.462 0.00 0.00 31.59 2.90
3564 4140 5.860941 ATGTTGTTTGTAACATCCAACCA 57.139 34.783 3.17 0.00 45.49 3.67
3691 4267 2.469516 GCTGTATCCCAAACCGCCG 61.470 63.158 0.00 0.00 0.00 6.46
3694 4270 1.834188 AAAGGCTGTATCCCAAACCG 58.166 50.000 0.00 0.00 0.00 4.44
3701 4277 5.376625 TGATCACCAATAAAGGCTGTATCC 58.623 41.667 0.00 0.00 0.00 2.59
3758 4334 5.068636 ACCAGAGCATCCATGTGATTTATC 58.931 41.667 0.00 0.00 33.66 1.75
3780 4356 8.765219 ACATGAAACGAATGAAGTAGCATATAC 58.235 33.333 0.00 0.00 0.00 1.47
3801 4377 1.696884 TGTGCCAGGACACTAACATGA 59.303 47.619 0.00 0.00 41.30 3.07
3805 4381 4.584327 ATTTTTGTGCCAGGACACTAAC 57.416 40.909 13.25 0.00 41.30 2.34
3823 4399 6.262056 ACTCCCTCCGTTCCATAATTATTT 57.738 37.500 0.00 0.00 0.00 1.40
3857 4433 6.080009 AGGGCTCCAAAATTAAGATGCATAT 58.920 36.000 0.00 0.00 0.00 1.78
3895 4471 5.521735 TGAACCAAATCCAAAATTGAACACG 59.478 36.000 0.00 0.00 0.00 4.49
3932 4508 3.440872 AGCTCGTCGAGAAATAGTTGACT 59.559 43.478 26.11 6.18 0.00 3.41
4001 4577 9.265938 GTTACCGATTAATTTAAGAAACCGTTC 57.734 33.333 0.00 0.00 0.00 3.95
4002 4578 8.782144 TGTTACCGATTAATTTAAGAAACCGTT 58.218 29.630 0.00 0.00 0.00 4.44
4102 4679 6.522054 GGTGGCTGTATGTACTATATTGTGT 58.478 40.000 0.00 0.00 0.00 3.72
4118 4696 0.537143 TTTCTTGCATCGGTGGCTGT 60.537 50.000 0.00 0.00 0.00 4.40
4127 4705 0.733909 GCGGGCAAGTTTCTTGCATC 60.734 55.000 27.59 19.85 46.58 3.91
4129 4707 2.727544 GCGGGCAAGTTTCTTGCA 59.272 55.556 27.59 0.00 46.58 4.08
4141 4719 0.818040 CCACCAATACTTAGGCGGGC 60.818 60.000 0.00 0.00 0.00 6.13
4145 4723 4.714632 TGCTAATCCACCAATACTTAGGC 58.285 43.478 0.00 0.00 0.00 3.93
4170 4748 4.999311 TCTTGATGGTGAGATTCTGTGTTG 59.001 41.667 0.00 0.00 0.00 3.33
4182 4760 1.425066 AGTGGGCTTTCTTGATGGTGA 59.575 47.619 0.00 0.00 0.00 4.02
4188 4766 3.634910 GGTGTTTTAGTGGGCTTTCTTGA 59.365 43.478 0.00 0.00 0.00 3.02
4229 4809 1.293924 GGCACGTGAGGAAGATGATG 58.706 55.000 22.23 0.00 0.00 3.07
4240 4820 1.178276 AAAGTTGGTTTGGCACGTGA 58.822 45.000 22.23 0.00 0.00 4.35
4245 4825 5.814705 CACAAAGATAAAAGTTGGTTTGGCA 59.185 36.000 0.00 0.00 30.75 4.92
4361 4941 7.442364 ACTGATAACTTGGATTATCATCAACCG 59.558 37.037 8.28 0.60 45.84 4.44
4670 5250 2.094442 TCGAATGATTGTCAGCACGGTA 60.094 45.455 0.00 0.00 0.00 4.02
4757 5337 1.130561 GTTTTAGCATCTGCCCGTGTC 59.869 52.381 0.00 0.00 43.38 3.67
4783 5363 7.704472 CCTTGCATTTGTGTCACTAAACTTTAA 59.296 33.333 4.27 0.00 0.00 1.52
4805 5385 5.106197 TGTGCACAACTATAGAAATGCCTTG 60.106 40.000 19.28 1.20 32.02 3.61
4850 5430 2.159043 CCGCAGAAGATCATACCTGTGT 60.159 50.000 0.00 0.00 35.91 3.72
4941 5521 6.294176 GGCAGATAAACAGGCCTATAACAATG 60.294 42.308 3.98 1.17 43.09 2.82
5139 5719 4.836125 TTCCATCCGTAGTAATACCGAC 57.164 45.455 0.00 0.00 0.00 4.79
5140 5720 6.885918 TCATATTCCATCCGTAGTAATACCGA 59.114 38.462 0.00 0.00 0.00 4.69
5141 5721 6.971184 GTCATATTCCATCCGTAGTAATACCG 59.029 42.308 0.00 0.00 0.00 4.02
5142 5722 7.093640 TGGTCATATTCCATCCGTAGTAATACC 60.094 40.741 0.00 0.00 0.00 2.73
5143 5723 7.833786 TGGTCATATTCCATCCGTAGTAATAC 58.166 38.462 0.00 0.00 0.00 1.89
5144 5724 8.425237 TTGGTCATATTCCATCCGTAGTAATA 57.575 34.615 0.00 0.00 34.75 0.98
5145 5725 6.928348 TGGTCATATTCCATCCGTAGTAAT 57.072 37.500 0.00 0.00 0.00 1.89
5187 5767 0.480252 AAAGAGAACAAGGCAGGGCT 59.520 50.000 0.00 0.00 0.00 5.19
5481 6062 3.365472 ACCCTTTGGTCATTGCCTAATC 58.635 45.455 0.00 0.00 43.06 1.75
5692 6276 5.724328 TCAGTGAGCTATAGTTTGTTCCTG 58.276 41.667 0.84 0.19 0.00 3.86
5750 6334 1.519455 CGAGCGCCTAGGTTTGGAG 60.519 63.158 11.31 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.