Multiple sequence alignment - TraesCS6B01G302000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G302000 chr6B 100.000 5025 0 0 1 5025 541161280 541156256 0.000000e+00 9280.0
1 TraesCS6B01G302000 chr6D 97.497 2877 64 5 273 3144 359532902 359530029 0.000000e+00 4907.0
2 TraesCS6B01G302000 chr6D 92.553 1759 83 20 3191 4922 359530027 359528290 0.000000e+00 2479.0
3 TraesCS6B01G302000 chr6D 86.574 216 20 2 8 223 359533499 359533293 3.910000e-56 230.0
4 TraesCS6B01G302000 chr6D 95.082 122 6 0 152 273 359533104 359532983 5.130000e-45 193.0
5 TraesCS6B01G302000 chr6A 97.089 2851 77 4 303 3151 501225830 501222984 0.000000e+00 4800.0
6 TraesCS6B01G302000 chr6A 94.432 1365 48 13 3167 4526 501222997 501221656 0.000000e+00 2074.0
7 TraesCS6B01G302000 chr6A 87.521 609 38 13 4327 4922 501221646 501221063 0.000000e+00 669.0
8 TraesCS6B01G302000 chr6A 90.909 143 13 0 1 143 501226057 501225915 5.130000e-45 193.0
9 TraesCS6B01G302000 chr6A 95.745 47 2 0 4146 4192 501221641 501221595 5.390000e-10 76.8
10 TraesCS6B01G302000 chr6A 93.617 47 3 0 4146 4192 501221835 501221789 2.510000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G302000 chr6B 541156256 541161280 5024 True 9280.000000 9280 100.000000 1 5025 1 chr6B.!!$R1 5024
1 TraesCS6B01G302000 chr6D 359528290 359533499 5209 True 1952.250000 4907 92.926500 8 4922 4 chr6D.!!$R1 4914
2 TraesCS6B01G302000 chr6A 501221063 501226057 4994 True 1314.016667 4800 93.218833 1 4922 6 chr6A.!!$R1 4921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 449 1.134128 TGTCGTAATGCATGGCTCCAT 60.134 47.619 0.00 0.0 37.08 3.41 F
1395 1787 1.838077 GTACCTACTGCTGGGAATGGT 59.162 52.381 0.00 0.0 0.00 3.55 F
1665 2057 0.750249 TTGCCTCTGATAATCCGCGA 59.250 50.000 8.23 0.0 0.00 5.87 F
2395 2787 0.895100 TTTCCTGCGGCTTGCTGATT 60.895 50.000 5.52 0.0 46.63 2.57 F
3130 3523 1.324736 GCGCACCTCGACTTTCTTATG 59.675 52.381 0.30 0.0 41.67 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 2057 1.212616 GAGCATATTTCAGCGCTCGT 58.787 50.000 7.13 0.0 41.26 4.18 R
3108 3500 0.531974 AAGAAAGTCGAGGTGCGCAA 60.532 50.000 14.00 0.0 40.61 4.85 R
3189 3582 3.438216 TGAGAGCAACCAAATGGATCA 57.562 42.857 6.42 0.0 38.94 2.92 R
3976 4369 0.611200 TGGTGTATGGGTTGGTCTCG 59.389 55.000 0.00 0.0 0.00 4.04 R
4742 5355 0.316689 GCGAAACACCTGTTCAACGG 60.317 55.000 11.42 0.0 37.25 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.126879 CATGCACGTGACCCGCAT 61.127 61.111 22.23 12.40 46.98 4.73
90 91 4.015406 TGACCCGCATGACGCCTT 62.015 61.111 0.00 0.00 41.76 4.35
104 105 4.058124 TGACGCCTTAGATATCAACATGC 58.942 43.478 5.32 0.25 0.00 4.06
108 109 4.456911 CGCCTTAGATATCAACATGCCATT 59.543 41.667 5.32 0.00 0.00 3.16
121 122 3.067180 ACATGCCATTCTAGAATTTGCGG 59.933 43.478 22.47 18.16 31.94 5.69
124 125 2.286418 GCCATTCTAGAATTTGCGGTCG 60.286 50.000 15.49 2.06 0.00 4.79
147 148 4.284860 TGCTATGAGCCGCGCGAT 62.285 61.111 34.63 20.30 41.51 4.58
150 151 4.583866 TATGAGCCGCGCGATGCA 62.584 61.111 34.63 24.62 46.97 3.96
169 428 2.926200 GCATCGAATGGTATGGAGATCG 59.074 50.000 0.00 0.00 0.00 3.69
190 449 1.134128 TGTCGTAATGCATGGCTCCAT 60.134 47.619 0.00 0.00 37.08 3.41
240 499 8.595781 ACAATGTGACTAAAATAAATTACGCG 57.404 30.769 3.53 3.53 0.00 6.01
256 515 6.663944 ATTACGCGCTCTATTTTTCTTCTT 57.336 33.333 5.73 0.00 0.00 2.52
257 516 4.585619 ACGCGCTCTATTTTTCTTCTTC 57.414 40.909 5.73 0.00 0.00 2.87
258 517 3.371285 ACGCGCTCTATTTTTCTTCTTCC 59.629 43.478 5.73 0.00 0.00 3.46
259 518 3.370978 CGCGCTCTATTTTTCTTCTTCCA 59.629 43.478 5.56 0.00 0.00 3.53
260 519 4.493220 CGCGCTCTATTTTTCTTCTTCCAG 60.493 45.833 5.56 0.00 0.00 3.86
261 520 4.631813 GCGCTCTATTTTTCTTCTTCCAGA 59.368 41.667 0.00 0.00 0.00 3.86
262 521 5.295540 GCGCTCTATTTTTCTTCTTCCAGAT 59.704 40.000 0.00 0.00 0.00 2.90
263 522 6.183360 GCGCTCTATTTTTCTTCTTCCAGATT 60.183 38.462 0.00 0.00 0.00 2.40
264 523 7.627300 GCGCTCTATTTTTCTTCTTCCAGATTT 60.627 37.037 0.00 0.00 0.00 2.17
265 524 8.239998 CGCTCTATTTTTCTTCTTCCAGATTTT 58.760 33.333 0.00 0.00 0.00 1.82
266 525 9.351570 GCTCTATTTTTCTTCTTCCAGATTTTG 57.648 33.333 0.00 0.00 0.00 2.44
267 526 9.351570 CTCTATTTTTCTTCTTCCAGATTTTGC 57.648 33.333 0.00 0.00 0.00 3.68
268 527 8.859090 TCTATTTTTCTTCTTCCAGATTTTGCA 58.141 29.630 0.00 0.00 0.00 4.08
269 528 9.480053 CTATTTTTCTTCTTCCAGATTTTGCAA 57.520 29.630 0.00 0.00 0.00 4.08
270 529 7.538303 TTTTTCTTCTTCCAGATTTTGCAAC 57.462 32.000 0.00 0.00 0.00 4.17
271 530 6.469782 TTTCTTCTTCCAGATTTTGCAACT 57.530 33.333 0.00 0.00 0.00 3.16
272 531 7.581213 TTTCTTCTTCCAGATTTTGCAACTA 57.419 32.000 0.00 0.00 0.00 2.24
273 532 6.808008 TCTTCTTCCAGATTTTGCAACTAG 57.192 37.500 0.00 0.00 0.00 2.57
274 533 6.299141 TCTTCTTCCAGATTTTGCAACTAGT 58.701 36.000 0.00 0.00 0.00 2.57
275 534 7.450074 TCTTCTTCCAGATTTTGCAACTAGTA 58.550 34.615 0.00 0.00 0.00 1.82
276 535 7.604164 TCTTCTTCCAGATTTTGCAACTAGTAG 59.396 37.037 0.00 0.00 0.00 2.57
277 536 7.004555 TCTTCCAGATTTTGCAACTAGTAGA 57.995 36.000 3.59 0.00 0.00 2.59
278 537 7.450074 TCTTCCAGATTTTGCAACTAGTAGAA 58.550 34.615 3.59 0.00 0.00 2.10
279 538 7.387948 TCTTCCAGATTTTGCAACTAGTAGAAC 59.612 37.037 3.59 0.00 0.00 3.01
280 539 5.637810 TCCAGATTTTGCAACTAGTAGAACG 59.362 40.000 3.59 0.00 0.00 3.95
281 540 5.163854 CCAGATTTTGCAACTAGTAGAACGG 60.164 44.000 3.59 0.00 0.00 4.44
282 541 5.637810 CAGATTTTGCAACTAGTAGAACGGA 59.362 40.000 3.59 0.00 0.00 4.69
283 542 6.147164 CAGATTTTGCAACTAGTAGAACGGAA 59.853 38.462 3.59 0.00 0.00 4.30
284 543 5.917541 TTTTGCAACTAGTAGAACGGAAG 57.082 39.130 3.59 0.00 0.00 3.46
301 560 5.903810 ACGGAAGTACAAGATCAACTATCC 58.096 41.667 0.00 3.10 46.88 2.59
376 767 3.449746 TTCCCGGTCAAAATCCATCTT 57.550 42.857 0.00 0.00 0.00 2.40
527 919 4.715130 ACCACCGCTGCTCCCCTA 62.715 66.667 0.00 0.00 0.00 3.53
672 1064 3.760035 AGCGATCTCGGGCGTTGT 61.760 61.111 1.34 0.00 40.23 3.32
882 1274 9.656040 ATTTTGCATCAATTACATCTTGCTTTA 57.344 25.926 0.00 0.00 0.00 1.85
927 1319 5.825593 TCTTTCAAGGTATTGTGGAGAGT 57.174 39.130 0.00 0.00 37.68 3.24
929 1321 6.601332 TCTTTCAAGGTATTGTGGAGAGTTT 58.399 36.000 0.00 0.00 37.68 2.66
931 1323 6.877611 TTCAAGGTATTGTGGAGAGTTTTC 57.122 37.500 0.00 0.00 37.68 2.29
942 1334 5.627499 TGGAGAGTTTTCCAATTTCATCG 57.373 39.130 0.00 0.00 44.09 3.84
1149 1541 2.146342 CACGTTGAGAATTCTGGTGCT 58.854 47.619 14.00 0.00 0.00 4.40
1251 1643 2.363795 AGCTTCGGGTCGGATGGA 60.364 61.111 0.00 0.00 0.00 3.41
1266 1658 3.306641 CGGATGGAGAGGAATCAAGGATC 60.307 52.174 0.00 0.00 0.00 3.36
1272 1664 3.634448 GAGAGGAATCAAGGATCGACTCA 59.366 47.826 0.00 0.00 0.00 3.41
1395 1787 1.838077 GTACCTACTGCTGGGAATGGT 59.162 52.381 0.00 0.00 0.00 3.55
1578 1970 2.173519 AGTGCCAAATCACAGAATGGG 58.826 47.619 0.00 0.00 44.77 4.00
1665 2057 0.750249 TTGCCTCTGATAATCCGCGA 59.250 50.000 8.23 0.00 0.00 5.87
1692 2084 1.524355 CTGAAATATGCTCTCCGTGCG 59.476 52.381 0.00 0.00 0.00 5.34
2259 2651 1.001641 GGCCTCAGTGGATTGCAGT 60.002 57.895 0.00 0.00 38.35 4.40
2313 2705 4.694760 TGATGAGGCTGTATGTGCTTAT 57.305 40.909 0.00 0.00 0.00 1.73
2395 2787 0.895100 TTTCCTGCGGCTTGCTGATT 60.895 50.000 5.52 0.00 46.63 2.57
2508 2900 4.057406 TGAAGAAATTGCCACTGGTTTG 57.943 40.909 0.00 0.00 0.00 2.93
2958 3350 4.594970 TCCCTTGTCAAGTTGTTTCTTCA 58.405 39.130 11.61 0.00 0.00 3.02
2964 3356 8.190784 CCTTGTCAAGTTGTTTCTTCAATACTT 58.809 33.333 11.61 0.00 0.00 2.24
2995 3387 6.068010 AGACCATACATGTTTCTTTGACCAA 58.932 36.000 2.30 0.00 0.00 3.67
2996 3388 6.016276 AGACCATACATGTTTCTTTGACCAAC 60.016 38.462 2.30 0.00 0.00 3.77
3084 3476 4.889409 CCCTGCATAACCTACATGTGAAAT 59.111 41.667 9.11 0.00 0.00 2.17
3108 3500 3.515602 AATGAAAGTGGAGTGCTTCCT 57.484 42.857 8.90 0.00 46.92 3.36
3120 3512 2.048222 CTTCCTTGCGCACCTCGA 60.048 61.111 11.12 0.00 41.67 4.04
3130 3523 1.324736 GCGCACCTCGACTTTCTTATG 59.675 52.381 0.30 0.00 41.67 1.90
3151 3544 5.290493 TGGTCCATGATTTATCGCTAAGT 57.710 39.130 0.00 0.00 0.00 2.24
3153 3546 6.119536 TGGTCCATGATTTATCGCTAAGTTT 58.880 36.000 0.00 0.00 0.00 2.66
3154 3547 6.601613 TGGTCCATGATTTATCGCTAAGTTTT 59.398 34.615 0.00 0.00 0.00 2.43
3155 3548 7.122055 TGGTCCATGATTTATCGCTAAGTTTTT 59.878 33.333 0.00 0.00 0.00 1.94
3189 3582 8.603304 AGGGATTTATCGCTAAGTTAATATGGT 58.397 33.333 7.45 0.00 46.59 3.55
3507 3900 6.017109 TGGCTGTTGAGTAAAAGAAAGATCAC 60.017 38.462 0.00 0.00 0.00 3.06
3530 3923 6.040166 CACCAATGCTTATCCTCTTGCTTTAT 59.960 38.462 0.00 0.00 0.00 1.40
3636 4029 8.961294 ATATTCTTCCTAATCATGATGCTAGC 57.039 34.615 9.46 8.10 0.00 3.42
3651 4044 5.420421 TGATGCTAGCTCTGAACTAAGAGTT 59.580 40.000 17.23 0.00 44.71 3.01
3766 4159 2.909006 TGAAAACTGCATCTCCCTCTCT 59.091 45.455 0.00 0.00 0.00 3.10
3788 4181 8.363390 TCTCTGAATATGTCCAGTTGATGATAC 58.637 37.037 0.00 0.00 0.00 2.24
3806 4199 9.554395 TGATGATACTTCTGTTCTTTTGTGTTA 57.446 29.630 0.00 0.00 0.00 2.41
3976 4369 5.414360 GCAAAATCCCTGGAAAATCTTCTC 58.586 41.667 0.00 0.00 0.00 2.87
4057 4450 7.559486 ACAGCTTTTGAAAGAGAAAAAGGAAT 58.441 30.769 7.63 0.00 41.56 3.01
4058 4451 7.493645 ACAGCTTTTGAAAGAGAAAAAGGAATG 59.506 33.333 7.63 0.00 41.56 2.67
4139 4535 4.098960 TGGGAATAGTAGTAGCGTTTGAGG 59.901 45.833 0.00 0.00 0.00 3.86
4147 4543 2.097791 AGTAGCGTTTGAGGATCGAGAC 59.902 50.000 0.00 0.00 38.61 3.36
4151 4547 1.986378 CGTTTGAGGATCGAGACACAC 59.014 52.381 0.00 0.00 38.61 3.82
4157 4553 3.258123 TGAGGATCGAGACACACAAATGA 59.742 43.478 0.00 0.00 38.61 2.57
4185 4581 8.484641 TGATTGATTGTTGTAAAGTTGCAAAA 57.515 26.923 0.00 0.00 34.63 2.44
4266 4662 1.774856 AGGTGTGTTTTGCCTAGTCCT 59.225 47.619 0.00 0.00 0.00 3.85
4267 4663 2.174854 AGGTGTGTTTTGCCTAGTCCTT 59.825 45.455 0.00 0.00 0.00 3.36
4268 4664 2.552743 GGTGTGTTTTGCCTAGTCCTTC 59.447 50.000 0.00 0.00 0.00 3.46
4358 4946 9.199982 ACACAAAAATGATCTGATTGATTGTTC 57.800 29.630 0.00 0.00 35.14 3.18
4382 4970 5.391312 AAAGTTGCAAAGGCTATTACCAG 57.609 39.130 0.00 0.00 41.91 4.00
4383 4971 4.034285 AGTTGCAAAGGCTATTACCAGT 57.966 40.909 0.00 0.00 41.91 4.00
4384 4972 4.407365 AGTTGCAAAGGCTATTACCAGTT 58.593 39.130 0.00 0.00 41.91 3.16
4385 4973 4.832823 AGTTGCAAAGGCTATTACCAGTTT 59.167 37.500 0.00 0.00 41.91 2.66
4386 4974 6.007703 AGTTGCAAAGGCTATTACCAGTTTA 58.992 36.000 0.00 0.00 41.91 2.01
4387 4975 5.890424 TGCAAAGGCTATTACCAGTTTAC 57.110 39.130 0.00 0.00 41.91 2.01
4388 4976 4.703093 TGCAAAGGCTATTACCAGTTTACC 59.297 41.667 0.00 0.00 41.91 2.85
4389 4977 4.703093 GCAAAGGCTATTACCAGTTTACCA 59.297 41.667 0.00 0.00 36.96 3.25
4390 4978 5.392703 GCAAAGGCTATTACCAGTTTACCAC 60.393 44.000 0.00 0.00 36.96 4.16
4391 4979 4.498894 AGGCTATTACCAGTTTACCACC 57.501 45.455 0.00 0.00 0.00 4.61
4392 4980 3.847780 AGGCTATTACCAGTTTACCACCA 59.152 43.478 0.00 0.00 0.00 4.17
4393 4981 3.943381 GGCTATTACCAGTTTACCACCAC 59.057 47.826 0.00 0.00 0.00 4.16
4415 5003 1.032114 ATGCCTTTTAGTGCTCGGGC 61.032 55.000 0.00 0.00 39.93 6.13
4427 5015 4.373116 TCGGGCGCCAGTGAGTTC 62.373 66.667 30.85 6.91 0.00 3.01
4436 5024 2.160417 CGCCAGTGAGTTCCATCTTTTC 59.840 50.000 0.00 0.00 0.00 2.29
4525 5117 9.961265 CATATGGATGGATATTGCATGATTAAC 57.039 33.333 0.00 0.00 0.00 2.01
4526 5118 9.703677 ATATGGATGGATATTGCATGATTAACA 57.296 29.630 0.00 0.00 0.00 2.41
4568 5171 8.370940 TGACAAATCAATAATTTTTGCCCTGTA 58.629 29.630 3.96 0.00 35.32 2.74
4576 5179 3.343941 TTTTTGCCCTGTATAGCTCGT 57.656 42.857 0.00 0.00 0.00 4.18
4698 5309 0.107897 TCGAGCACACAAACACCACT 60.108 50.000 0.00 0.00 0.00 4.00
4700 5311 0.663153 GAGCACACAAACACCACTCC 59.337 55.000 0.00 0.00 0.00 3.85
4701 5312 0.034574 AGCACACAAACACCACTCCA 60.035 50.000 0.00 0.00 0.00 3.86
4703 5314 0.738389 CACACAAACACCACTCCACC 59.262 55.000 0.00 0.00 0.00 4.61
4733 5346 7.582667 TTACTTGCTCAGTGTCTATAGCATA 57.417 36.000 4.47 0.00 43.94 3.14
4742 5355 5.180117 CAGTGTCTATAGCATAAACCATGGC 59.820 44.000 13.04 0.00 34.97 4.40
4762 5375 0.653323 CGTTGAACAGGTGTTTCGCG 60.653 55.000 0.00 0.00 38.56 5.87
4764 5377 0.375454 TTGAACAGGTGTTTCGCGTG 59.625 50.000 5.77 0.00 38.56 5.34
4783 5396 4.381292 GCGTGGTCCTACTACAACAACTAT 60.381 45.833 0.00 0.00 29.27 2.12
4838 5451 7.097289 GCAGAATCGACATAATTTGAATTGACG 60.097 37.037 0.00 0.00 0.00 4.35
4841 5454 6.961359 TCGACATAATTTGAATTGACGTCT 57.039 33.333 17.92 0.00 0.00 4.18
4856 5469 3.511699 GACGTCTGTCATATGAAGCACA 58.488 45.455 7.07 0.73 44.82 4.57
4880 5493 3.117398 TCCATAATGATTTGGAGGCTGCT 60.117 43.478 7.74 0.00 37.10 4.24
4922 5537 3.186909 TCGACAAACGCATCCTTCATAG 58.813 45.455 0.00 0.00 42.26 2.23
4923 5538 3.119280 TCGACAAACGCATCCTTCATAGA 60.119 43.478 0.00 0.00 42.26 1.98
4924 5539 3.804325 CGACAAACGCATCCTTCATAGAT 59.196 43.478 0.00 0.00 34.51 1.98
4925 5540 4.271049 CGACAAACGCATCCTTCATAGATT 59.729 41.667 0.00 0.00 34.51 2.40
4926 5541 5.220662 CGACAAACGCATCCTTCATAGATTT 60.221 40.000 0.00 0.00 34.51 2.17
4927 5542 6.515272 ACAAACGCATCCTTCATAGATTTT 57.485 33.333 0.00 0.00 0.00 1.82
4928 5543 6.555315 ACAAACGCATCCTTCATAGATTTTC 58.445 36.000 0.00 0.00 0.00 2.29
4929 5544 6.375455 ACAAACGCATCCTTCATAGATTTTCT 59.625 34.615 0.00 0.00 0.00 2.52
4930 5545 7.094205 ACAAACGCATCCTTCATAGATTTTCTT 60.094 33.333 0.00 0.00 0.00 2.52
4931 5546 7.396540 AACGCATCCTTCATAGATTTTCTTT 57.603 32.000 0.00 0.00 0.00 2.52
4932 5547 7.396540 ACGCATCCTTCATAGATTTTCTTTT 57.603 32.000 0.00 0.00 0.00 2.27
4933 5548 8.506168 ACGCATCCTTCATAGATTTTCTTTTA 57.494 30.769 0.00 0.00 0.00 1.52
4934 5549 9.125026 ACGCATCCTTCATAGATTTTCTTTTAT 57.875 29.630 0.00 0.00 0.00 1.40
4935 5550 9.956720 CGCATCCTTCATAGATTTTCTTTTATT 57.043 29.630 0.00 0.00 0.00 1.40
4983 5598 9.914131 AGTTGCAGTTTAAGAGATTTTTAATCC 57.086 29.630 0.00 0.00 0.00 3.01
4984 5599 9.691362 GTTGCAGTTTAAGAGATTTTTAATCCA 57.309 29.630 0.00 0.00 0.00 3.41
4986 5601 9.691362 TGCAGTTTAAGAGATTTTTAATCCAAC 57.309 29.630 0.00 0.00 0.00 3.77
4987 5602 9.140286 GCAGTTTAAGAGATTTTTAATCCAACC 57.860 33.333 0.00 0.00 0.00 3.77
4993 5608 8.887036 AAGAGATTTTTAATCCAACCAAACAC 57.113 30.769 0.00 0.00 0.00 3.32
4994 5609 8.250143 AGAGATTTTTAATCCAACCAAACACT 57.750 30.769 0.00 0.00 0.00 3.55
4995 5610 9.362151 AGAGATTTTTAATCCAACCAAACACTA 57.638 29.630 0.00 0.00 0.00 2.74
4996 5611 9.406828 GAGATTTTTAATCCAACCAAACACTAC 57.593 33.333 0.00 0.00 0.00 2.73
4997 5612 8.919145 AGATTTTTAATCCAACCAAACACTACA 58.081 29.630 0.00 0.00 0.00 2.74
4998 5613 9.705290 GATTTTTAATCCAACCAAACACTACAT 57.295 29.630 0.00 0.00 0.00 2.29
5004 5619 7.775053 ATCCAACCAAACACTACATAATTGT 57.225 32.000 0.00 0.00 39.98 2.71
5005 5620 7.209471 TCCAACCAAACACTACATAATTGTC 57.791 36.000 0.00 0.00 37.28 3.18
5006 5621 6.773200 TCCAACCAAACACTACATAATTGTCA 59.227 34.615 0.00 0.00 37.28 3.58
5007 5622 7.450014 TCCAACCAAACACTACATAATTGTCAT 59.550 33.333 0.00 0.00 37.28 3.06
5008 5623 7.754924 CCAACCAAACACTACATAATTGTCATC 59.245 37.037 0.00 0.00 37.28 2.92
5009 5624 7.994425 ACCAAACACTACATAATTGTCATCA 57.006 32.000 0.00 0.00 37.28 3.07
5010 5625 8.402798 ACCAAACACTACATAATTGTCATCAA 57.597 30.769 0.00 0.00 37.28 2.57
5011 5626 8.855110 ACCAAACACTACATAATTGTCATCAAA 58.145 29.630 0.00 0.00 37.28 2.69
5012 5627 9.128107 CCAAACACTACATAATTGTCATCAAAC 57.872 33.333 0.00 0.00 37.28 2.93
5013 5628 9.676195 CAAACACTACATAATTGTCATCAAACA 57.324 29.630 0.00 0.00 37.28 2.83
5014 5629 9.677567 AAACACTACATAATTGTCATCAAACAC 57.322 29.630 0.00 0.00 37.28 3.32
5015 5630 7.518161 ACACTACATAATTGTCATCAAACACG 58.482 34.615 0.00 0.00 37.28 4.49
5016 5631 6.960992 CACTACATAATTGTCATCAAACACGG 59.039 38.462 0.00 0.00 37.28 4.94
5017 5632 5.957842 ACATAATTGTCATCAAACACGGT 57.042 34.783 0.00 0.00 37.11 4.83
5018 5633 7.820386 ACTACATAATTGTCATCAAACACGGTA 59.180 33.333 0.00 0.00 37.28 4.02
5019 5634 7.441890 ACATAATTGTCATCAAACACGGTAA 57.558 32.000 0.00 0.00 37.11 2.85
5020 5635 7.877003 ACATAATTGTCATCAAACACGGTAAA 58.123 30.769 0.00 0.00 37.11 2.01
5021 5636 7.806014 ACATAATTGTCATCAAACACGGTAAAC 59.194 33.333 0.00 0.00 37.11 2.01
5022 5637 5.759506 ATTGTCATCAAACACGGTAAACA 57.240 34.783 0.00 0.00 37.11 2.83
5023 5638 5.562506 TTGTCATCAAACACGGTAAACAA 57.437 34.783 0.00 0.00 0.00 2.83
5024 5639 4.911053 TGTCATCAAACACGGTAAACAAC 58.089 39.130 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.855763 AATTGCCTCTGGATTTTACATTGA 57.144 33.333 0.00 0.00 0.00 2.57
40 41 7.013274 TGCCTTTCATATTGTAGTAATTGCCTC 59.987 37.037 0.00 0.00 0.00 4.70
82 83 4.058124 GCATGTTGATATCTAAGGCGTCA 58.942 43.478 3.98 0.00 0.00 4.35
104 105 2.286418 GCGACCGCAAATTCTAGAATGG 60.286 50.000 18.61 16.48 41.49 3.16
108 109 0.461339 GGGCGACCGCAAATTCTAGA 60.461 55.000 16.47 0.00 43.64 2.43
147 148 3.614870 CGATCTCCATACCATTCGATGCA 60.615 47.826 0.00 0.00 0.00 3.96
150 151 3.574396 ACACGATCTCCATACCATTCGAT 59.426 43.478 0.00 0.00 0.00 3.59
169 428 0.657840 GGAGCCATGCATTACGACAC 59.342 55.000 0.00 0.00 0.00 3.67
256 515 5.637810 CGTTCTACTAGTTGCAAAATCTGGA 59.362 40.000 0.00 0.00 0.00 3.86
257 516 5.163854 CCGTTCTACTAGTTGCAAAATCTGG 60.164 44.000 0.00 0.00 0.00 3.86
258 517 5.637810 TCCGTTCTACTAGTTGCAAAATCTG 59.362 40.000 0.00 0.00 0.00 2.90
259 518 5.790593 TCCGTTCTACTAGTTGCAAAATCT 58.209 37.500 0.00 0.00 0.00 2.40
260 519 6.147328 ACTTCCGTTCTACTAGTTGCAAAATC 59.853 38.462 0.00 0.00 0.00 2.17
261 520 5.995897 ACTTCCGTTCTACTAGTTGCAAAAT 59.004 36.000 0.00 0.00 0.00 1.82
262 521 5.362263 ACTTCCGTTCTACTAGTTGCAAAA 58.638 37.500 0.00 0.00 0.00 2.44
263 522 4.952460 ACTTCCGTTCTACTAGTTGCAAA 58.048 39.130 0.00 0.00 0.00 3.68
264 523 4.595762 ACTTCCGTTCTACTAGTTGCAA 57.404 40.909 0.00 0.00 0.00 4.08
265 524 4.520111 TGTACTTCCGTTCTACTAGTTGCA 59.480 41.667 0.00 0.00 0.00 4.08
266 525 5.051891 TGTACTTCCGTTCTACTAGTTGC 57.948 43.478 0.00 0.00 0.00 4.17
267 526 6.906659 TCTTGTACTTCCGTTCTACTAGTTG 58.093 40.000 0.00 0.00 0.00 3.16
268 527 7.392673 TGATCTTGTACTTCCGTTCTACTAGTT 59.607 37.037 0.00 0.00 0.00 2.24
269 528 6.883217 TGATCTTGTACTTCCGTTCTACTAGT 59.117 38.462 0.00 0.00 0.00 2.57
270 529 7.317842 TGATCTTGTACTTCCGTTCTACTAG 57.682 40.000 0.00 0.00 0.00 2.57
271 530 7.392673 AGTTGATCTTGTACTTCCGTTCTACTA 59.607 37.037 0.00 0.00 0.00 1.82
272 531 6.208994 AGTTGATCTTGTACTTCCGTTCTACT 59.791 38.462 0.00 0.00 0.00 2.57
273 532 6.388278 AGTTGATCTTGTACTTCCGTTCTAC 58.612 40.000 0.00 0.00 0.00 2.59
274 533 6.585695 AGTTGATCTTGTACTTCCGTTCTA 57.414 37.500 0.00 0.00 0.00 2.10
275 534 5.470047 AGTTGATCTTGTACTTCCGTTCT 57.530 39.130 0.00 0.00 0.00 3.01
276 535 6.476053 GGATAGTTGATCTTGTACTTCCGTTC 59.524 42.308 0.00 0.00 34.66 3.95
277 536 6.154706 AGGATAGTTGATCTTGTACTTCCGTT 59.845 38.462 0.00 0.00 34.66 4.44
278 537 5.657302 AGGATAGTTGATCTTGTACTTCCGT 59.343 40.000 0.00 0.00 34.66 4.69
279 538 6.150396 AGGATAGTTGATCTTGTACTTCCG 57.850 41.667 0.00 0.00 34.66 4.30
280 539 6.098409 TGGAGGATAGTTGATCTTGTACTTCC 59.902 42.308 0.00 0.00 34.66 3.46
281 540 7.113658 TGGAGGATAGTTGATCTTGTACTTC 57.886 40.000 0.00 0.00 34.66 3.01
282 541 7.419518 CCATGGAGGATAGTTGATCTTGTACTT 60.420 40.741 5.56 0.00 41.22 2.24
283 542 6.042552 CCATGGAGGATAGTTGATCTTGTACT 59.957 42.308 5.56 0.00 41.22 2.73
284 543 6.042093 TCCATGGAGGATAGTTGATCTTGTAC 59.958 42.308 11.44 0.00 43.07 2.90
285 544 6.143206 TCCATGGAGGATAGTTGATCTTGTA 58.857 40.000 11.44 0.00 43.07 2.41
286 545 4.971282 TCCATGGAGGATAGTTGATCTTGT 59.029 41.667 11.44 0.00 43.07 3.16
287 546 5.557576 TCCATGGAGGATAGTTGATCTTG 57.442 43.478 11.44 0.00 43.07 3.02
296 555 9.841524 CATTGTGATGAGGTCCATGGAGGATAG 62.842 48.148 16.81 0.00 41.38 2.08
297 556 8.160092 CATTGTGATGAGGTCCATGGAGGATA 62.160 46.154 16.81 2.67 41.38 2.59
298 557 7.451005 CATTGTGATGAGGTCCATGGAGGAT 62.451 48.000 16.81 3.48 41.38 3.24
299 558 1.273781 TGTGATGAGGTCCATGGAGGA 60.274 52.381 16.81 0.00 46.75 3.71
300 559 1.206878 TGTGATGAGGTCCATGGAGG 58.793 55.000 16.81 0.00 35.17 4.30
301 560 3.211865 CATTGTGATGAGGTCCATGGAG 58.788 50.000 16.81 0.00 35.17 3.86
355 746 3.669939 AGATGGATTTTGACCGGGAAT 57.330 42.857 6.32 0.00 0.00 3.01
376 767 0.904865 ATGTCGCTGTGGGGAAGAGA 60.905 55.000 0.00 0.00 36.19 3.10
961 1353 3.372514 GCGAAAGATTCTTCTCACCCTTC 59.627 47.826 0.00 0.00 0.00 3.46
1251 1643 3.636300 CTGAGTCGATCCTTGATTCCTCT 59.364 47.826 0.00 0.00 0.00 3.69
1395 1787 1.306141 CTGAGGCCTGACAGGGGTA 60.306 63.158 23.09 0.00 35.37 3.69
1548 1940 2.084546 GATTTGGCACTAGCTTTCCGT 58.915 47.619 0.00 0.00 41.70 4.69
1578 1970 3.325293 TCAAGACCAGCATCTTCTGTC 57.675 47.619 0.00 0.00 36.78 3.51
1665 2057 1.212616 GAGCATATTTCAGCGCTCGT 58.787 50.000 7.13 0.00 41.26 4.18
2259 2651 7.720957 CCCAATGAGAGATAAATGTCACCAATA 59.279 37.037 0.00 0.00 0.00 1.90
2313 2705 5.654603 TGAATACCGTAAGAGCTTTCTGA 57.345 39.130 0.00 0.00 43.02 3.27
2328 2720 4.080526 TCCCCTTTGCTAGTCTTGAATACC 60.081 45.833 0.00 0.00 0.00 2.73
2395 2787 6.065374 TCAGCTTCCCTGTTTTGTTGTATAA 58.935 36.000 0.00 0.00 42.38 0.98
2508 2900 7.117523 GTCTCATATATGGCTGAAACATCAGTC 59.882 40.741 12.78 3.57 42.27 3.51
2616 3008 4.084287 TCTGAGCTTCAATTCCAGCAATT 58.916 39.130 7.89 0.00 38.61 2.32
2995 3387 9.515226 TTAGCAAGATGGAAATTAACAGTTAGT 57.485 29.630 0.00 0.00 0.00 2.24
3084 3476 6.084326 GGAAGCACTCCACTTTCATTAAAA 57.916 37.500 0.10 0.00 44.67 1.52
3108 3500 0.531974 AAGAAAGTCGAGGTGCGCAA 60.532 50.000 14.00 0.00 40.61 4.85
3120 3512 7.041098 GCGATAAATCATGGACCATAAGAAAGT 60.041 37.037 6.67 0.00 0.00 2.66
3130 3523 6.619801 AAACTTAGCGATAAATCATGGACC 57.380 37.500 0.00 0.00 0.00 4.46
3155 3548 6.657541 ACTTAGCGATAAATCCCTCACAAAAA 59.342 34.615 0.00 0.00 0.00 1.94
3156 3549 6.177610 ACTTAGCGATAAATCCCTCACAAAA 58.822 36.000 0.00 0.00 0.00 2.44
3157 3550 5.741011 ACTTAGCGATAAATCCCTCACAAA 58.259 37.500 0.00 0.00 0.00 2.83
3158 3551 5.353394 ACTTAGCGATAAATCCCTCACAA 57.647 39.130 0.00 0.00 0.00 3.33
3159 3552 5.353394 AACTTAGCGATAAATCCCTCACA 57.647 39.130 0.00 0.00 0.00 3.58
3160 3553 7.964604 ATTAACTTAGCGATAAATCCCTCAC 57.035 36.000 0.00 0.00 0.00 3.51
3161 3554 9.653287 CATATTAACTTAGCGATAAATCCCTCA 57.347 33.333 0.00 0.00 0.00 3.86
3162 3555 9.099454 CCATATTAACTTAGCGATAAATCCCTC 57.901 37.037 0.00 0.00 0.00 4.30
3163 3556 8.603304 ACCATATTAACTTAGCGATAAATCCCT 58.397 33.333 0.00 0.00 0.00 4.20
3164 3557 8.665685 CACCATATTAACTTAGCGATAAATCCC 58.334 37.037 0.00 0.00 0.00 3.85
3165 3558 9.431887 TCACCATATTAACTTAGCGATAAATCC 57.568 33.333 0.00 0.00 0.00 3.01
3168 3561 9.431887 GGATCACCATATTAACTTAGCGATAAA 57.568 33.333 0.00 0.00 35.97 1.40
3169 3562 8.590204 TGGATCACCATATTAACTTAGCGATAA 58.410 33.333 0.00 0.00 41.77 1.75
3170 3563 8.129496 TGGATCACCATATTAACTTAGCGATA 57.871 34.615 0.00 0.00 41.77 2.92
3171 3564 7.004555 TGGATCACCATATTAACTTAGCGAT 57.995 36.000 0.00 0.00 41.77 4.58
3172 3565 6.413783 TGGATCACCATATTAACTTAGCGA 57.586 37.500 0.00 0.00 41.77 4.93
3189 3582 3.438216 TGAGAGCAACCAAATGGATCA 57.562 42.857 6.42 0.00 38.94 2.92
3507 3900 4.996788 AAAGCAAGAGGATAAGCATTGG 57.003 40.909 0.00 0.00 0.00 3.16
3530 3923 5.319453 ACAGAAAGATGCAAATGGAGAAGA 58.681 37.500 0.00 0.00 0.00 2.87
3636 4029 4.264460 ACTGGCAACTCTTAGTTCAGAG 57.736 45.455 12.73 0.00 45.29 3.35
3716 4109 8.261492 TCTTAATCTCAGATTTGCTTTCAGAC 57.739 34.615 4.90 0.00 0.00 3.51
3766 4159 8.708378 AGAAGTATCATCAACTGGACATATTCA 58.292 33.333 0.00 0.00 0.00 2.57
3788 4181 6.316390 AGTCTGGTAACACAAAAGAACAGAAG 59.684 38.462 0.00 0.00 46.17 2.85
3806 4199 0.622738 ATGGCCTCATCCAGTCTGGT 60.623 55.000 18.65 3.56 39.89 4.00
3889 4282 2.687805 CCTCCGCTTCTCGTCGTCA 61.688 63.158 0.00 0.00 36.19 4.35
3976 4369 0.611200 TGGTGTATGGGTTGGTCTCG 59.389 55.000 0.00 0.00 0.00 4.04
4057 4450 4.935205 ACACAAATTCTTAGCGTCATAGCA 59.065 37.500 0.00 0.00 40.15 3.49
4058 4451 5.470845 ACACAAATTCTTAGCGTCATAGC 57.529 39.130 0.00 0.00 37.41 2.97
4139 4535 5.105063 TCAGATCATTTGTGTGTCTCGATC 58.895 41.667 0.00 0.00 0.00 3.69
4147 4543 7.597369 ACAACAATCAATCAGATCATTTGTGTG 59.403 33.333 0.00 2.03 35.39 3.82
4157 4553 7.660112 TGCAACTTTACAACAATCAATCAGAT 58.340 30.769 0.00 0.00 39.09 2.90
4185 4581 9.014297 AGCAAGTAATAACAAGTGAAAATAGCT 57.986 29.630 0.00 0.00 0.00 3.32
4322 4722 7.767659 TCAGATCATTTTTGTGTCATCTAGGAG 59.232 37.037 0.00 0.00 0.00 3.69
4323 4723 7.623630 TCAGATCATTTTTGTGTCATCTAGGA 58.376 34.615 0.00 0.00 0.00 2.94
4324 4724 7.854557 TCAGATCATTTTTGTGTCATCTAGG 57.145 36.000 0.00 0.00 0.00 3.02
4325 4725 9.717892 CAATCAGATCATTTTTGTGTCATCTAG 57.282 33.333 0.00 0.00 0.00 2.43
4358 4946 6.151144 ACTGGTAATAGCCTTTGCAACTTTAG 59.849 38.462 0.00 0.00 41.13 1.85
4382 4970 1.530323 AGGCATTCGTGGTGGTAAAC 58.470 50.000 0.00 0.00 0.00 2.01
4383 4971 2.279935 AAGGCATTCGTGGTGGTAAA 57.720 45.000 0.00 0.00 0.00 2.01
4384 4972 2.279935 AAAGGCATTCGTGGTGGTAA 57.720 45.000 0.00 0.00 0.00 2.85
4385 4973 2.279935 AAAAGGCATTCGTGGTGGTA 57.720 45.000 0.00 0.00 0.00 3.25
4386 4974 2.159382 CTAAAAGGCATTCGTGGTGGT 58.841 47.619 0.00 0.00 0.00 4.16
4387 4975 2.095263 CACTAAAAGGCATTCGTGGTGG 60.095 50.000 4.09 0.00 0.00 4.61
4388 4976 2.668279 GCACTAAAAGGCATTCGTGGTG 60.668 50.000 6.81 6.81 0.00 4.17
4389 4977 1.539827 GCACTAAAAGGCATTCGTGGT 59.460 47.619 9.23 0.00 0.00 4.16
4390 4978 1.812571 AGCACTAAAAGGCATTCGTGG 59.187 47.619 9.23 0.00 0.00 4.94
4391 4979 2.474526 CGAGCACTAAAAGGCATTCGTG 60.475 50.000 4.44 4.44 0.00 4.35
4392 4980 1.732259 CGAGCACTAAAAGGCATTCGT 59.268 47.619 0.00 0.00 0.00 3.85
4393 4981 1.062587 CCGAGCACTAAAAGGCATTCG 59.937 52.381 0.00 0.00 0.00 3.34
4415 5003 1.813513 AAAGATGGAACTCACTGGCG 58.186 50.000 0.00 0.00 0.00 5.69
4427 5015 6.135290 TGATTCTTTATGCGGAAAAGATGG 57.865 37.500 12.40 0.00 41.34 3.51
4428 5016 8.464770 TTTTGATTCTTTATGCGGAAAAGATG 57.535 30.769 12.40 0.00 41.34 2.90
4509 5101 9.770503 CATAGCTCTTGTTAATCATGCAATATC 57.229 33.333 0.00 0.00 0.00 1.63
4525 5117 7.329962 TGATTTGTCATTTTTGCATAGCTCTTG 59.670 33.333 0.00 0.00 0.00 3.02
4526 5118 7.380536 TGATTTGTCATTTTTGCATAGCTCTT 58.619 30.769 0.00 0.00 0.00 2.85
4560 5163 0.459899 CACACGAGCTATACAGGGCA 59.540 55.000 0.00 0.00 0.00 5.36
4561 5164 0.460311 ACACACGAGCTATACAGGGC 59.540 55.000 0.00 0.00 0.00 5.19
4568 5171 6.163476 TGAGAAACATTAACACACGAGCTAT 58.837 36.000 0.00 0.00 0.00 2.97
4649 5254 8.925700 CCATGTAGCCTTTGTTCTAAAATTTTC 58.074 33.333 6.72 0.00 0.00 2.29
4650 5255 8.646900 TCCATGTAGCCTTTGTTCTAAAATTTT 58.353 29.630 8.75 8.75 0.00 1.82
4653 5261 6.127619 GCTCCATGTAGCCTTTGTTCTAAAAT 60.128 38.462 0.00 0.00 36.45 1.82
4658 5266 2.307098 AGCTCCATGTAGCCTTTGTTCT 59.693 45.455 6.67 0.00 43.86 3.01
4659 5267 2.680339 GAGCTCCATGTAGCCTTTGTTC 59.320 50.000 6.67 0.00 43.86 3.18
4662 5273 1.134699 TCGAGCTCCATGTAGCCTTTG 60.135 52.381 8.47 0.00 43.86 2.77
4698 5309 4.286032 ACTGAGCAAGTAATAACAGGTGGA 59.714 41.667 0.00 0.00 37.36 4.02
4700 5311 4.997395 ACACTGAGCAAGTAATAACAGGTG 59.003 41.667 0.00 0.00 36.83 4.00
4701 5312 5.012148 AGACACTGAGCAAGTAATAACAGGT 59.988 40.000 0.00 0.00 36.83 4.00
4703 5314 9.457110 CTATAGACACTGAGCAAGTAATAACAG 57.543 37.037 0.00 0.00 36.83 3.16
4733 5346 0.673437 CTGTTCAACGGCCATGGTTT 59.327 50.000 14.67 1.36 0.00 3.27
4742 5355 0.316689 GCGAAACACCTGTTCAACGG 60.317 55.000 11.42 0.00 37.25 4.44
4762 5375 6.694447 TCAATAGTTGTTGTAGTAGGACCAC 58.306 40.000 0.00 0.00 0.00 4.16
4764 5377 7.156673 TGTTCAATAGTTGTTGTAGTAGGACC 58.843 38.462 0.00 0.00 0.00 4.46
4783 5396 6.259167 AGTTGCTCTAACACGTAATTGTTCAA 59.741 34.615 0.00 0.00 41.88 2.69
4838 5451 3.868077 GGAGTGTGCTTCATATGACAGAC 59.132 47.826 4.48 9.88 0.00 3.51
4841 5454 3.979101 TGGAGTGTGCTTCATATGACA 57.021 42.857 4.48 0.00 0.00 3.58
4880 5493 3.506743 TGTTTGCTCCCAGGCCCA 61.507 61.111 0.00 0.00 0.00 5.36
4957 5572 9.914131 GGATTAAAAATCTCTTAAACTGCAACT 57.086 29.630 0.00 0.00 0.00 3.16
4958 5573 9.691362 TGGATTAAAAATCTCTTAAACTGCAAC 57.309 29.630 0.00 0.00 0.00 4.17
4960 5575 9.691362 GTTGGATTAAAAATCTCTTAAACTGCA 57.309 29.630 0.11 0.00 0.00 4.41
4961 5576 9.140286 GGTTGGATTAAAAATCTCTTAAACTGC 57.860 33.333 0.11 0.00 0.00 4.40
4967 5582 9.974980 GTGTTTGGTTGGATTAAAAATCTCTTA 57.025 29.630 0.11 0.00 0.00 2.10
4968 5583 8.704668 AGTGTTTGGTTGGATTAAAAATCTCTT 58.295 29.630 0.11 0.00 0.00 2.85
4969 5584 8.250143 AGTGTTTGGTTGGATTAAAAATCTCT 57.750 30.769 0.11 0.00 0.00 3.10
4970 5585 9.406828 GTAGTGTTTGGTTGGATTAAAAATCTC 57.593 33.333 0.11 0.00 0.00 2.75
4971 5586 8.919145 TGTAGTGTTTGGTTGGATTAAAAATCT 58.081 29.630 0.11 0.00 0.00 2.40
4972 5587 9.705290 ATGTAGTGTTTGGTTGGATTAAAAATC 57.295 29.630 0.00 0.00 0.00 2.17
4978 5593 9.303116 ACAATTATGTAGTGTTTGGTTGGATTA 57.697 29.630 0.00 0.00 38.24 1.75
4979 5594 8.189119 ACAATTATGTAGTGTTTGGTTGGATT 57.811 30.769 0.00 0.00 38.24 3.01
4980 5595 7.450014 TGACAATTATGTAGTGTTTGGTTGGAT 59.550 33.333 0.00 0.00 40.74 3.41
4981 5596 6.773200 TGACAATTATGTAGTGTTTGGTTGGA 59.227 34.615 0.00 0.00 40.74 3.53
4982 5597 6.976088 TGACAATTATGTAGTGTTTGGTTGG 58.024 36.000 0.00 0.00 40.74 3.77
4983 5598 8.296000 TGATGACAATTATGTAGTGTTTGGTTG 58.704 33.333 0.00 0.00 40.74 3.77
4984 5599 8.402798 TGATGACAATTATGTAGTGTTTGGTT 57.597 30.769 0.00 0.00 40.74 3.67
4985 5600 7.994425 TGATGACAATTATGTAGTGTTTGGT 57.006 32.000 0.00 0.00 40.74 3.67
4986 5601 9.128107 GTTTGATGACAATTATGTAGTGTTTGG 57.872 33.333 0.00 0.00 40.74 3.28
4987 5602 9.676195 TGTTTGATGACAATTATGTAGTGTTTG 57.324 29.630 0.00 0.00 40.74 2.93
4988 5603 9.677567 GTGTTTGATGACAATTATGTAGTGTTT 57.322 29.630 0.00 0.00 40.74 2.83
4989 5604 8.015087 CGTGTTTGATGACAATTATGTAGTGTT 58.985 33.333 0.00 0.00 40.74 3.32
4990 5605 7.360861 CCGTGTTTGATGACAATTATGTAGTGT 60.361 37.037 0.00 0.00 40.74 3.55
4991 5606 6.960992 CCGTGTTTGATGACAATTATGTAGTG 59.039 38.462 0.00 0.00 40.74 2.74
4992 5607 6.653320 ACCGTGTTTGATGACAATTATGTAGT 59.347 34.615 0.00 0.00 40.74 2.73
4993 5608 7.072177 ACCGTGTTTGATGACAATTATGTAG 57.928 36.000 0.00 0.00 40.74 2.74
4994 5609 8.549338 TTACCGTGTTTGATGACAATTATGTA 57.451 30.769 0.00 0.00 40.74 2.29
4995 5610 5.957842 ACCGTGTTTGATGACAATTATGT 57.042 34.783 0.00 0.00 44.25 2.29
4996 5611 7.805542 TGTTTACCGTGTTTGATGACAATTATG 59.194 33.333 0.00 0.00 35.85 1.90
4997 5612 7.877003 TGTTTACCGTGTTTGATGACAATTAT 58.123 30.769 0.00 0.00 35.85 1.28
4998 5613 7.260558 TGTTTACCGTGTTTGATGACAATTA 57.739 32.000 0.00 0.00 35.85 1.40
4999 5614 6.137794 TGTTTACCGTGTTTGATGACAATT 57.862 33.333 0.00 0.00 35.85 2.32
5000 5615 5.759506 TGTTTACCGTGTTTGATGACAAT 57.240 34.783 0.00 0.00 35.85 2.71
5001 5616 5.333513 GTTGTTTACCGTGTTTGATGACAA 58.666 37.500 0.00 0.00 0.00 3.18
5002 5617 4.911053 GTTGTTTACCGTGTTTGATGACA 58.089 39.130 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.