Multiple sequence alignment - TraesCS6B01G301700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G301700 chr6B 100.000 7545 0 0 1 7545 540597899 540590355 0.000000e+00 13934.0
1 TraesCS6B01G301700 chr6B 98.739 1983 23 2 3398 5379 560191698 560193679 0.000000e+00 3522.0
2 TraesCS6B01G301700 chr6B 98.665 1723 17 1 5797 7519 560197118 560198834 0.000000e+00 3049.0
3 TraesCS6B01G301700 chr6B 98.030 1523 14 4 1763 3276 560189977 560191492 0.000000e+00 2632.0
4 TraesCS6B01G301700 chr6B 98.253 973 11 1 801 1767 560188736 560189708 0.000000e+00 1698.0
5 TraesCS6B01G301700 chr6B 99.529 425 2 0 5376 5800 560196399 560196823 0.000000e+00 774.0
6 TraesCS6B01G301700 chr6B 87.879 495 43 5 1 494 560187563 560188041 3.950000e-157 566.0
7 TraesCS6B01G301700 chr6B 92.049 327 16 3 492 809 560188200 560188525 1.150000e-122 451.0
8 TraesCS6B01G301700 chr6B 97.490 239 4 2 3168 3405 560191274 560191511 2.530000e-109 407.0
9 TraesCS6B01G301700 chr6B 98.182 220 3 1 3057 3276 540594732 540594514 4.270000e-102 383.0
10 TraesCS6B01G301700 chr6B 98.182 220 3 1 3168 3386 540594843 540594624 4.270000e-102 383.0
11 TraesCS6B01G301700 chr6B 97.273 110 2 1 3057 3166 560191384 560191492 1.290000e-42 185.0
12 TraesCS6B01G301700 chr6B 96.364 110 3 1 3057 3166 540594622 540594514 6.010000e-41 180.0
13 TraesCS6B01G301700 chr6B 96.364 110 3 1 3278 3386 540594843 540594734 6.010000e-41 180.0
14 TraesCS6B01G301700 chr6B 95.455 110 3 2 3278 3386 560191274 560191382 2.800000e-39 174.0
15 TraesCS6B01G301700 chr6B 88.333 60 7 0 4532 4591 674566007 674565948 1.050000e-08 73.1
16 TraesCS6B01G301700 chr6B 100.000 34 0 0 820 853 540597008 540596975 6.320000e-06 63.9
17 TraesCS6B01G301700 chr6B 100.000 34 0 0 892 925 540597080 540597047 6.320000e-06 63.9
18 TraesCS6B01G301700 chr6B 100.000 34 0 0 892 925 560188755 560188788 6.320000e-06 63.9
19 TraesCS6B01G301700 chr6B 100.000 34 0 0 820 853 560188827 560188860 6.320000e-06 63.9
20 TraesCS6B01G301700 chr6A 93.624 2588 94 23 3278 5807 500509256 500506682 0.000000e+00 3799.0
21 TraesCS6B01G301700 chr6A 92.130 1728 82 25 655 2351 500511544 500509840 0.000000e+00 2388.0
22 TraesCS6B01G301700 chr6A 91.393 1673 69 24 5916 7544 500506558 500504917 0.000000e+00 2222.0
23 TraesCS6B01G301700 chr6A 95.245 715 28 4 2454 3166 500509860 500509150 0.000000e+00 1127.0
24 TraesCS6B01G301700 chr6A 93.561 264 15 2 396 658 471880733 471880995 7.100000e-105 392.0
25 TraesCS6B01G301700 chr6A 83.121 314 39 8 1 309 500511922 500511618 2.680000e-69 274.0
26 TraesCS6B01G301700 chr6A 89.362 47 5 0 4570 4616 6443104 6443150 8.180000e-05 60.2
27 TraesCS6B01G301700 chr6D 91.676 1742 78 22 655 2357 358982778 358981065 0.000000e+00 2351.0
28 TraesCS6B01G301700 chr6D 92.347 1581 80 23 5985 7545 358977857 358976298 0.000000e+00 2211.0
29 TraesCS6B01G301700 chr6D 92.320 1263 72 15 3278 4531 358980479 358979233 0.000000e+00 1772.0
30 TraesCS6B01G301700 chr6D 88.737 1243 61 36 4612 5807 358979235 358978025 0.000000e+00 1447.0
31 TraesCS6B01G301700 chr6D 89.740 731 48 12 2454 3166 358981091 358980370 0.000000e+00 909.0
32 TraesCS6B01G301700 chr6D 81.440 361 55 8 1 358 358983152 358982801 1.240000e-72 285.0
33 TraesCS6B01G301700 chr6D 97.273 110 2 1 3168 3276 358980479 358980370 1.290000e-42 185.0
34 TraesCS6B01G301700 chr6D 92.708 96 7 0 5889 5984 358978026 358977931 1.020000e-28 139.0
35 TraesCS6B01G301700 chr6D 100.000 34 0 0 820 853 358982547 358982514 6.320000e-06 63.9
36 TraesCS6B01G301700 chr7D 94.096 271 14 2 393 662 426171932 426172201 1.960000e-110 411.0
37 TraesCS6B01G301700 chr4D 93.893 262 14 2 396 656 48708657 48708917 1.970000e-105 394.0
38 TraesCS6B01G301700 chr4D 93.536 263 15 2 396 657 47750707 47750968 2.550000e-104 390.0
39 TraesCS6B01G301700 chr4D 92.135 89 7 0 5803 5891 317189866 317189954 7.950000e-25 126.0
40 TraesCS6B01G301700 chr4D 90.196 51 3 2 3607 3656 118339419 118339370 1.760000e-06 65.8
41 TraesCS6B01G301700 chr3B 93.893 262 14 2 396 656 41582428 41582688 1.970000e-105 394.0
42 TraesCS6B01G301700 chr7A 93.511 262 15 2 396 656 535468312 535468572 9.180000e-104 388.0
43 TraesCS6B01G301700 chr7A 95.349 43 2 0 3552 3594 284728737 284728695 1.360000e-07 69.4
44 TraesCS6B01G301700 chr5D 93.208 265 16 2 393 656 87803350 87803613 9.180000e-104 388.0
45 TraesCS6B01G301700 chr5D 83.168 101 8 8 3551 3648 566045090 566044996 4.850000e-12 84.2
46 TraesCS6B01G301700 chr3D 92.336 274 19 2 388 660 416217322 416217594 9.180000e-104 388.0
47 TraesCS6B01G301700 chr3D 94.444 90 4 1 5803 5891 603266270 603266359 3.670000e-28 137.0
48 TraesCS6B01G301700 chr3D 92.473 93 6 1 5803 5894 455100663 455100571 1.710000e-26 132.0
49 TraesCS6B01G301700 chr2A 93.182 264 16 2 395 657 585819147 585818885 3.300000e-103 387.0
50 TraesCS6B01G301700 chr2A 95.349 86 4 0 2350 2435 478404890 478404975 3.670000e-28 137.0
51 TraesCS6B01G301700 chr2A 90.588 85 8 0 4529 4613 608647274 608647358 6.190000e-21 113.0
52 TraesCS6B01G301700 chr2D 96.552 87 3 0 2349 2435 301419222 301419308 2.190000e-30 145.0
53 TraesCS6B01G301700 chr2D 95.349 43 2 0 3552 3594 565956137 565956095 1.360000e-07 69.4
54 TraesCS6B01G301700 chr7B 83.544 158 19 5 3 153 700605367 700605524 2.840000e-29 141.0
55 TraesCS6B01G301700 chr7B 85.556 90 10 3 4525 4613 699840679 699840766 2.900000e-14 91.6
56 TraesCS6B01G301700 chr1A 95.349 86 4 0 2350 2435 91704585 91704670 3.670000e-28 137.0
57 TraesCS6B01G301700 chr1A 93.023 86 6 0 5806 5891 394590544 394590629 7.950000e-25 126.0
58 TraesCS6B01G301700 chr1A 92.045 88 7 0 4529 4616 304031888 304031975 2.860000e-24 124.0
59 TraesCS6B01G301700 chr5B 91.579 95 8 0 2341 2435 35838126 35838032 1.710000e-26 132.0
60 TraesCS6B01G301700 chr5B 93.023 43 3 0 4532 4574 679558777 679558735 6.320000e-06 63.9
61 TraesCS6B01G301700 chr4A 90.816 98 9 0 2341 2438 699236928 699236831 1.710000e-26 132.0
62 TraesCS6B01G301700 chr4A 93.103 87 6 0 5805 5891 709209193 709209107 2.210000e-25 128.0
63 TraesCS6B01G301700 chr4A 92.593 81 5 1 4541 4621 90592912 90592991 1.720000e-21 115.0
64 TraesCS6B01G301700 chr4A 95.745 47 2 0 4569 4615 467543805 467543851 8.120000e-10 76.8
65 TraesCS6B01G301700 chr4A 100.000 29 0 0 3604 3632 586706483 586706511 4.000000e-03 54.7
66 TraesCS6B01G301700 chr5A 94.118 85 5 0 5806 5890 366233872 366233788 6.140000e-26 130.0
67 TraesCS6B01G301700 chr5A 97.260 73 2 0 4541 4613 564602373 564602301 2.860000e-24 124.0
68 TraesCS6B01G301700 chr5A 87.356 87 9 1 2349 2433 639221408 639221494 1.730000e-16 99.0
69 TraesCS6B01G301700 chr5A 96.078 51 2 0 3548 3598 76911455 76911405 4.850000e-12 84.2
70 TraesCS6B01G301700 chr5A 83.824 68 7 4 73 138 436315030 436315095 2.270000e-05 62.1
71 TraesCS6B01G301700 chr1B 93.182 88 6 0 5803 5890 562890047 562890134 6.140000e-26 130.0
72 TraesCS6B01G301700 chr1B 91.176 68 6 0 2348 2415 488773666 488773599 8.060000e-15 93.5
73 TraesCS6B01G301700 chr1B 80.702 114 12 5 3552 3655 678047844 678047957 6.280000e-11 80.5
74 TraesCS6B01G301700 chr3A 91.304 92 8 0 5806 5897 690192306 690192215 7.950000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G301700 chr6B 540590355 540597899 7544 True 2169.685714 13934 98.441714 1 7545 7 chr6B.!!$R2 7544
1 TraesCS6B01G301700 chr6B 560187563 560198834 11271 False 1132.150000 3522 96.946833 1 7519 12 chr6B.!!$F1 7518
2 TraesCS6B01G301700 chr6A 500504917 500511922 7005 True 1962.000000 3799 91.102600 1 7544 5 chr6A.!!$R1 7543
3 TraesCS6B01G301700 chr6D 358976298 358983152 6854 True 1040.322222 2351 91.804556 1 7545 9 chr6D.!!$R1 7544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 381 1.491563 CGCGTCTAACCAACAGTGC 59.508 57.895 0.00 0.0 0.00 4.40 F
685 856 1.813513 AGTCCAGCCAAACGATGAAG 58.186 50.000 0.00 0.0 0.00 3.02 F
1904 2600 1.929169 CGCATGACTGGTGTGATACTG 59.071 52.381 0.00 0.0 0.00 2.74 F
3338 4063 2.357323 GCTGCTTGAAATAGCTCCTTCC 59.643 50.000 0.00 0.0 41.76 3.46 F
3355 4080 3.456277 CCTTCCTTGTAAGATAGCTGGGT 59.544 47.826 0.00 0.0 0.00 4.51 F
3356 4081 4.654262 CCTTCCTTGTAAGATAGCTGGGTA 59.346 45.833 0.00 0.0 0.00 3.69 F
3918 4837 4.703093 CGATTGGGGGTAGTTACATTTTGT 59.297 41.667 0.00 0.0 0.00 2.83 F
4814 5749 7.931015 TTAGATCTATTGGATAACCCACAGT 57.069 36.000 2.58 0.0 46.62 3.55 F
5617 9321 3.007614 TCGTACCCCTTCCTCAAAAGAAG 59.992 47.826 0.00 0.0 40.39 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1911 1.704641 ACAGTCTAGCACACAGGTCA 58.295 50.000 0.00 0.00 0.00 4.02 R
2403 3110 2.770164 AAGACAATTCTCAGACCCCG 57.230 50.000 0.00 0.00 0.00 5.73 R
3632 4551 0.561184 ATGATACTCCCTCCGACCCA 59.439 55.000 0.00 0.00 0.00 4.51 R
4429 5359 1.202348 GCAACATTAACCCTGCCACTC 59.798 52.381 0.00 0.00 0.00 3.51 R
4749 5684 3.761897 ACCCTCATCTTAGAGATCTCCG 58.238 50.000 19.30 8.37 37.87 4.63 R
5379 6360 0.948678 GCGCACAAAGTGGTAAAGGA 59.051 50.000 0.30 0.00 33.64 3.36 R
5617 9321 5.499004 TCATAGGCAGGGGTATGATTAAC 57.501 43.478 0.00 0.00 31.97 2.01 R
6344 10523 9.099454 GGACCACAATATACTAGTTCAGAAAAG 57.901 37.037 0.00 0.00 0.00 2.27 R
7478 11709 0.037697 GTTCAATTCAAACCCGGGCC 60.038 55.000 24.08 0.00 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.790389 TTGTTTAGTTGAAATGTGTCGTAATTT 57.210 25.926 0.00 0.00 0.00 1.82
70 71 9.781834 TGAAATGTGTCGTAATTTATTTGATCC 57.218 29.630 0.00 0.00 0.00 3.36
71 72 9.233232 GAAATGTGTCGTAATTTATTTGATCCC 57.767 33.333 0.00 0.00 0.00 3.85
153 158 2.824689 ATGTATGTGGGCATGGTTGA 57.175 45.000 0.00 0.00 36.58 3.18
236 241 3.689649 GCGTTGGAGATGTCCTTACAAAT 59.310 43.478 10.72 0.00 44.30 2.32
274 281 5.938125 GGCCAATAAAGACTAACTCTTGACA 59.062 40.000 0.00 0.00 39.36 3.58
309 316 6.942532 ATAGAAGAAACAACTTTGAGCACA 57.057 33.333 0.00 0.00 0.00 4.57
312 319 7.333528 AGAAGAAACAACTTTGAGCACAATA 57.666 32.000 0.00 0.00 35.85 1.90
315 322 6.729187 AGAAACAACTTTGAGCACAATACTC 58.271 36.000 0.00 0.00 35.85 2.59
316 325 6.318648 AGAAACAACTTTGAGCACAATACTCA 59.681 34.615 0.00 0.00 42.30 3.41
355 364 2.661866 GCTAGCCATACACCCGCG 60.662 66.667 2.29 0.00 0.00 6.46
367 376 3.484547 CCCGCGCGTCTAACCAAC 61.485 66.667 29.95 0.00 0.00 3.77
372 381 1.491563 CGCGTCTAACCAACAGTGC 59.508 57.895 0.00 0.00 0.00 4.40
403 412 6.827586 CATTCTCTATGGTACTACTCCCTC 57.172 45.833 0.00 0.00 0.00 4.30
405 414 3.327172 TCTCTATGGTACTACTCCCTCCG 59.673 52.174 0.00 0.00 0.00 4.63
417 426 7.008021 ACTACTCCCTCCGTTTTTATTTACA 57.992 36.000 0.00 0.00 0.00 2.41
418 427 7.627311 ACTACTCCCTCCGTTTTTATTTACAT 58.373 34.615 0.00 0.00 0.00 2.29
420 429 6.478129 ACTCCCTCCGTTTTTATTTACATCA 58.522 36.000 0.00 0.00 0.00 3.07
421 430 7.116736 ACTCCCTCCGTTTTTATTTACATCAT 58.883 34.615 0.00 0.00 0.00 2.45
422 431 8.269317 ACTCCCTCCGTTTTTATTTACATCATA 58.731 33.333 0.00 0.00 0.00 2.15
423 432 9.284968 CTCCCTCCGTTTTTATTTACATCATAT 57.715 33.333 0.00 0.00 0.00 1.78
459 468 7.971722 GGTCAAAGTCAAGCTTTACAAACTTTA 59.028 33.333 13.07 4.44 44.95 1.85
538 708 7.581213 AGATTTGTTGTTGAATGTACTTCCA 57.419 32.000 0.00 0.00 32.49 3.53
632 803 8.722480 TGACTTCAATCAACTCTAATATGTGG 57.278 34.615 0.00 0.00 0.00 4.17
651 822 5.005094 TGTGGAGTAAATAAAAACGGAGGG 58.995 41.667 0.00 0.00 0.00 4.30
685 856 1.813513 AGTCCAGCCAAACGATGAAG 58.186 50.000 0.00 0.00 0.00 3.02
793 974 9.921637 TGTAAATTCACAAGGATATTCCAAAAC 57.078 29.630 0.00 0.00 39.61 2.43
929 1335 3.725010 GCGTAGATTGCTTTTTGTCCTCG 60.725 47.826 0.00 0.00 0.00 4.63
1496 1911 2.435586 GGATGCGTCTGCTGCTGT 60.436 61.111 5.77 0.00 43.34 4.40
1581 1999 6.309980 GGAGATTACATACTTCTGATGCATCG 59.690 42.308 21.34 15.63 0.00 3.84
1663 2081 5.304686 TCTGTTTCAGGGTTAGTCAATGT 57.695 39.130 0.00 0.00 31.51 2.71
1672 2090 3.127548 GGGTTAGTCAATGTCATGCACAG 59.872 47.826 0.00 0.00 38.85 3.66
1904 2600 1.929169 CGCATGACTGGTGTGATACTG 59.071 52.381 0.00 0.00 0.00 2.74
2403 3110 6.543735 ACCTTATATATTCCAAAGCCAGACC 58.456 40.000 0.00 0.00 0.00 3.85
2553 3261 9.913310 AAAATTCTGGGAATAGTTTTTCCAAAA 57.087 25.926 5.65 0.00 45.89 2.44
3276 4001 2.632996 ACTCAGTTGGTGCTAGTGCTTA 59.367 45.455 0.00 0.00 40.48 3.09
3277 4002 2.996621 CTCAGTTGGTGCTAGTGCTTAC 59.003 50.000 0.00 0.00 40.48 2.34
3278 4003 2.632996 TCAGTTGGTGCTAGTGCTTACT 59.367 45.455 0.00 0.00 40.48 2.24
3279 4004 2.996621 CAGTTGGTGCTAGTGCTTACTC 59.003 50.000 0.00 0.00 40.48 2.59
3280 4005 2.900546 AGTTGGTGCTAGTGCTTACTCT 59.099 45.455 0.00 0.00 40.48 3.24
3281 4006 3.325135 AGTTGGTGCTAGTGCTTACTCTT 59.675 43.478 0.00 0.00 40.48 2.85
3282 4007 4.065789 GTTGGTGCTAGTGCTTACTCTTT 58.934 43.478 0.00 0.00 40.48 2.52
3283 4008 3.664107 TGGTGCTAGTGCTTACTCTTTG 58.336 45.455 0.00 0.00 40.48 2.77
3284 4009 3.071023 TGGTGCTAGTGCTTACTCTTTGT 59.929 43.478 0.00 0.00 40.48 2.83
3285 4010 3.680458 GGTGCTAGTGCTTACTCTTTGTC 59.320 47.826 0.00 0.00 40.48 3.18
3286 4011 4.561105 GTGCTAGTGCTTACTCTTTGTCT 58.439 43.478 0.00 0.00 40.48 3.41
3287 4012 4.991687 GTGCTAGTGCTTACTCTTTGTCTT 59.008 41.667 0.00 0.00 40.48 3.01
3288 4013 5.119434 GTGCTAGTGCTTACTCTTTGTCTTC 59.881 44.000 0.00 0.00 40.48 2.87
3289 4014 5.011125 TGCTAGTGCTTACTCTTTGTCTTCT 59.989 40.000 0.00 0.00 40.48 2.85
3290 4015 6.208797 TGCTAGTGCTTACTCTTTGTCTTCTA 59.791 38.462 0.00 0.00 40.48 2.10
3291 4016 7.091443 GCTAGTGCTTACTCTTTGTCTTCTAA 58.909 38.462 0.00 0.00 36.03 2.10
3292 4017 7.062488 GCTAGTGCTTACTCTTTGTCTTCTAAC 59.938 40.741 0.00 0.00 36.03 2.34
3293 4018 6.224584 AGTGCTTACTCTTTGTCTTCTAACC 58.775 40.000 0.00 0.00 0.00 2.85
3294 4019 5.118817 GTGCTTACTCTTTGTCTTCTAACCG 59.881 44.000 0.00 0.00 0.00 4.44
3295 4020 5.221382 TGCTTACTCTTTGTCTTCTAACCGT 60.221 40.000 0.00 0.00 0.00 4.83
3296 4021 5.695363 GCTTACTCTTTGTCTTCTAACCGTT 59.305 40.000 0.00 0.00 0.00 4.44
3297 4022 6.128876 GCTTACTCTTTGTCTTCTAACCGTTC 60.129 42.308 0.00 0.00 0.00 3.95
3298 4023 5.532664 ACTCTTTGTCTTCTAACCGTTCT 57.467 39.130 0.00 0.00 0.00 3.01
3299 4024 5.915175 ACTCTTTGTCTTCTAACCGTTCTT 58.085 37.500 0.00 0.00 0.00 2.52
3300 4025 6.346896 ACTCTTTGTCTTCTAACCGTTCTTT 58.653 36.000 0.00 0.00 0.00 2.52
3301 4026 6.822170 ACTCTTTGTCTTCTAACCGTTCTTTT 59.178 34.615 0.00 0.00 0.00 2.27
3302 4027 7.336176 ACTCTTTGTCTTCTAACCGTTCTTTTT 59.664 33.333 0.00 0.00 0.00 1.94
3321 4046 3.698029 TTTGTCACTTCTTCTTGCTGC 57.302 42.857 0.00 0.00 0.00 5.25
3322 4047 2.627515 TGTCACTTCTTCTTGCTGCT 57.372 45.000 0.00 0.00 0.00 4.24
3323 4048 2.923121 TGTCACTTCTTCTTGCTGCTT 58.077 42.857 0.00 0.00 0.00 3.91
3324 4049 2.615447 TGTCACTTCTTCTTGCTGCTTG 59.385 45.455 0.00 0.00 0.00 4.01
3325 4050 2.874701 GTCACTTCTTCTTGCTGCTTGA 59.125 45.455 0.00 0.00 0.00 3.02
3326 4051 3.313526 GTCACTTCTTCTTGCTGCTTGAA 59.686 43.478 0.00 4.59 0.00 2.69
3327 4052 3.947196 TCACTTCTTCTTGCTGCTTGAAA 59.053 39.130 0.00 0.00 0.00 2.69
3328 4053 4.581824 TCACTTCTTCTTGCTGCTTGAAAT 59.418 37.500 0.00 0.00 0.00 2.17
3329 4054 5.764686 TCACTTCTTCTTGCTGCTTGAAATA 59.235 36.000 0.00 0.00 0.00 1.40
3330 4055 6.072838 TCACTTCTTCTTGCTGCTTGAAATAG 60.073 38.462 0.00 7.63 0.00 1.73
3331 4056 4.691860 TCTTCTTGCTGCTTGAAATAGC 57.308 40.909 0.00 0.00 41.59 2.97
3332 4057 4.330250 TCTTCTTGCTGCTTGAAATAGCT 58.670 39.130 0.00 0.00 41.76 3.32
3333 4058 4.394300 TCTTCTTGCTGCTTGAAATAGCTC 59.606 41.667 0.00 0.00 41.76 4.09
3334 4059 3.012518 TCTTGCTGCTTGAAATAGCTCC 58.987 45.455 0.00 0.00 41.76 4.70
3335 4060 2.795231 TGCTGCTTGAAATAGCTCCT 57.205 45.000 0.00 0.00 41.76 3.69
3336 4061 3.077484 TGCTGCTTGAAATAGCTCCTT 57.923 42.857 0.00 0.00 41.76 3.36
3337 4062 3.012518 TGCTGCTTGAAATAGCTCCTTC 58.987 45.455 0.00 0.00 41.76 3.46
3338 4063 2.357323 GCTGCTTGAAATAGCTCCTTCC 59.643 50.000 0.00 0.00 41.76 3.46
3339 4064 3.883669 CTGCTTGAAATAGCTCCTTCCT 58.116 45.455 0.00 0.00 41.76 3.36
3340 4065 4.268359 CTGCTTGAAATAGCTCCTTCCTT 58.732 43.478 0.00 0.00 41.76 3.36
3341 4066 4.012374 TGCTTGAAATAGCTCCTTCCTTG 58.988 43.478 0.00 0.00 41.76 3.61
3342 4067 4.013050 GCTTGAAATAGCTCCTTCCTTGT 58.987 43.478 0.00 0.00 38.15 3.16
3343 4068 5.186198 GCTTGAAATAGCTCCTTCCTTGTA 58.814 41.667 0.00 0.00 38.15 2.41
3344 4069 5.648092 GCTTGAAATAGCTCCTTCCTTGTAA 59.352 40.000 0.00 0.00 38.15 2.41
3345 4070 6.183360 GCTTGAAATAGCTCCTTCCTTGTAAG 60.183 42.308 0.00 0.00 38.15 2.34
3346 4071 6.620877 TGAAATAGCTCCTTCCTTGTAAGA 57.379 37.500 0.00 0.00 0.00 2.10
3347 4072 7.200434 TGAAATAGCTCCTTCCTTGTAAGAT 57.800 36.000 0.00 0.00 0.00 2.40
3348 4073 8.319057 TGAAATAGCTCCTTCCTTGTAAGATA 57.681 34.615 0.00 0.00 0.00 1.98
3349 4074 8.424918 TGAAATAGCTCCTTCCTTGTAAGATAG 58.575 37.037 0.00 0.00 0.00 2.08
3350 4075 4.681074 AGCTCCTTCCTTGTAAGATAGC 57.319 45.455 0.00 0.00 36.41 2.97
3351 4076 4.294347 AGCTCCTTCCTTGTAAGATAGCT 58.706 43.478 0.00 0.00 39.12 3.32
3352 4077 4.100808 AGCTCCTTCCTTGTAAGATAGCTG 59.899 45.833 0.00 0.00 40.79 4.24
3353 4078 4.742138 GCTCCTTCCTTGTAAGATAGCTGG 60.742 50.000 0.00 0.00 34.80 4.85
3354 4079 3.711704 TCCTTCCTTGTAAGATAGCTGGG 59.288 47.826 0.00 0.00 0.00 4.45
3355 4080 3.456277 CCTTCCTTGTAAGATAGCTGGGT 59.544 47.826 0.00 0.00 0.00 4.51
3356 4081 4.654262 CCTTCCTTGTAAGATAGCTGGGTA 59.346 45.833 0.00 0.00 0.00 3.69
3357 4082 5.221541 CCTTCCTTGTAAGATAGCTGGGTAG 60.222 48.000 0.00 0.00 0.00 3.18
3358 4083 4.880164 TCCTTGTAAGATAGCTGGGTAGT 58.120 43.478 0.00 0.00 0.00 2.73
3359 4084 6.022107 TCCTTGTAAGATAGCTGGGTAGTA 57.978 41.667 0.00 0.00 0.00 1.82
3360 4085 6.437755 TCCTTGTAAGATAGCTGGGTAGTAA 58.562 40.000 0.00 0.00 0.00 2.24
3361 4086 6.899075 TCCTTGTAAGATAGCTGGGTAGTAAA 59.101 38.462 0.00 0.00 0.00 2.01
3362 4087 7.567622 TCCTTGTAAGATAGCTGGGTAGTAAAT 59.432 37.037 0.00 0.00 0.00 1.40
3363 4088 8.211629 CCTTGTAAGATAGCTGGGTAGTAAATT 58.788 37.037 0.00 0.00 0.00 1.82
3369 4094 8.548880 AGATAGCTGGGTAGTAAATTAACTCA 57.451 34.615 0.00 0.00 0.00 3.41
3370 4095 9.160412 AGATAGCTGGGTAGTAAATTAACTCAT 57.840 33.333 0.00 0.00 0.00 2.90
3371 4096 9.780186 GATAGCTGGGTAGTAAATTAACTCATT 57.220 33.333 0.00 0.00 0.00 2.57
3373 4098 8.281212 AGCTGGGTAGTAAATTAACTCATTTG 57.719 34.615 0.00 0.00 0.00 2.32
3374 4099 7.339466 AGCTGGGTAGTAAATTAACTCATTTGG 59.661 37.037 0.00 0.00 0.00 3.28
3375 4100 7.122204 GCTGGGTAGTAAATTAACTCATTTGGT 59.878 37.037 0.00 0.00 0.00 3.67
3918 4837 4.703093 CGATTGGGGGTAGTTACATTTTGT 59.297 41.667 0.00 0.00 0.00 2.83
4429 5359 8.997621 TGTCTGTTGCCTTAGTAAATTAGTAG 57.002 34.615 0.00 0.00 0.00 2.57
4534 5464 8.279970 TGCTAATTTTCATGCATGTTAGTACT 57.720 30.769 25.43 0.00 0.00 2.73
4814 5749 7.931015 TTAGATCTATTGGATAACCCACAGT 57.069 36.000 2.58 0.00 46.62 3.55
5617 9321 3.007614 TCGTACCCCTTCCTCAAAAGAAG 59.992 47.826 0.00 0.00 40.39 2.85
5814 9819 7.011382 TCCAGTTTAAGAGATATACTCCCTCC 58.989 42.308 0.00 0.00 45.96 4.30
5819 9824 5.327737 AAGAGATATACTCCCTCCGTTCT 57.672 43.478 0.00 0.00 45.96 3.01
6344 10523 4.091509 CACTGAACTATGCCGTGTAACTTC 59.908 45.833 0.00 0.00 31.75 3.01
6923 11122 4.974721 GCCTGGTGGTGGTGGTGG 62.975 72.222 0.00 0.00 35.27 4.61
7073 11272 0.103572 GCTTCATCGGCGGGTACTTA 59.896 55.000 7.21 0.00 0.00 2.24
7160 11359 0.898320 CCTTCTTCTTGGAGAGCCGA 59.102 55.000 0.00 0.00 36.79 5.54
7476 11707 4.486503 GGGCAGAGGCAGAGGCAG 62.487 72.222 0.00 0.00 43.71 4.85
7477 11708 3.397439 GGCAGAGGCAGAGGCAGA 61.397 66.667 0.00 0.00 43.71 4.26
7478 11709 2.187424 GCAGAGGCAGAGGCAGAG 59.813 66.667 0.00 0.00 43.71 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.539496 CGGACGAGACTTTTCCAACCA 60.539 52.381 0.00 0.00 0.00 3.67
103 104 7.259161 AGCAATTTTGAACAAAATGCACAAAT 58.741 26.923 27.15 15.94 46.76 2.32
141 146 0.903924 CACCCATTCAACCATGCCCA 60.904 55.000 0.00 0.00 0.00 5.36
197 202 2.858745 ACGCAAACCCTTGTAACAGAT 58.141 42.857 0.00 0.00 34.79 2.90
198 203 2.335316 ACGCAAACCCTTGTAACAGA 57.665 45.000 0.00 0.00 34.79 3.41
199 204 2.542824 CCAACGCAAACCCTTGTAACAG 60.543 50.000 0.00 0.00 34.79 3.16
205 210 1.068333 CATCTCCAACGCAAACCCTTG 60.068 52.381 0.00 0.00 35.49 3.61
236 241 8.245491 GTCTTTATTGGCCCGTTCTTATTTTAA 58.755 33.333 0.00 0.00 0.00 1.52
309 316 3.129638 GTCTTCGAGGCTCAGTGAGTATT 59.870 47.826 21.06 7.37 31.39 1.89
312 319 0.885196 GTCTTCGAGGCTCAGTGAGT 59.115 55.000 21.06 2.23 31.39 3.41
315 322 1.153939 CCGTCTTCGAGGCTCAGTG 60.154 63.158 15.95 3.36 39.71 3.66
316 325 2.344203 CCCGTCTTCGAGGCTCAGT 61.344 63.158 15.95 0.00 39.71 3.41
355 364 0.942410 TCGCACTGTTGGTTAGACGC 60.942 55.000 0.00 0.00 0.00 5.19
367 376 2.825836 GAATGGGGCCTCGCACTG 60.826 66.667 0.84 0.00 38.67 3.66
372 381 3.923354 CATAGAGAATGGGGCCTCG 57.077 57.895 0.84 0.00 34.75 4.63
397 406 6.995511 TGATGTAAATAAAAACGGAGGGAG 57.004 37.500 0.00 0.00 0.00 4.30
421 430 9.515226 AGCTTGACTTTGACCAAAACTAATATA 57.485 29.630 0.00 0.00 0.00 0.86
422 431 8.409358 AGCTTGACTTTGACCAAAACTAATAT 57.591 30.769 0.00 0.00 0.00 1.28
423 432 7.817418 AGCTTGACTTTGACCAAAACTAATA 57.183 32.000 0.00 0.00 0.00 0.98
424 433 6.715347 AGCTTGACTTTGACCAAAACTAAT 57.285 33.333 0.00 0.00 0.00 1.73
425 434 6.524101 AAGCTTGACTTTGACCAAAACTAA 57.476 33.333 0.00 0.00 33.71 2.24
426 435 6.524101 AAAGCTTGACTTTGACCAAAACTA 57.476 33.333 0.00 0.00 47.00 2.24
427 436 5.405935 AAAGCTTGACTTTGACCAAAACT 57.594 34.783 0.00 0.00 47.00 2.66
431 440 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
432 441 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
433 442 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
630 801 5.013391 ACTCCCTCCGTTTTTATTTACTCCA 59.987 40.000 0.00 0.00 0.00 3.86
632 803 7.099120 TGTACTCCCTCCGTTTTTATTTACTC 58.901 38.462 0.00 0.00 0.00 2.59
644 815 4.360951 TTCAATTTTGTACTCCCTCCGT 57.639 40.909 0.00 0.00 0.00 4.69
645 816 4.760204 ACTTTCAATTTTGTACTCCCTCCG 59.240 41.667 0.00 0.00 0.00 4.63
651 822 5.009610 TGGCTGGACTTTCAATTTTGTACTC 59.990 40.000 0.00 0.00 0.00 2.59
735 916 5.534207 TGAATGGAATTGTATTGGCCATC 57.466 39.130 6.09 0.00 38.33 3.51
793 974 1.291877 CGAGACCCAAAACCGCTCAG 61.292 60.000 0.00 0.00 0.00 3.35
929 1335 5.070446 AGAGGAGTTTTGGGGAAATTTTGAC 59.930 40.000 0.00 0.00 0.00 3.18
1496 1911 1.704641 ACAGTCTAGCACACAGGTCA 58.295 50.000 0.00 0.00 0.00 4.02
1581 1999 2.872858 CCTAAAAAGGATGCTACGAGCC 59.127 50.000 0.00 0.00 41.51 4.70
1672 2090 6.693545 CAGCTAGTATGAGTAGTTACTGCAAC 59.306 42.308 2.94 0.00 36.50 4.17
1904 2600 5.174943 GCATTTACACAACTTACAAAGCACC 59.825 40.000 0.00 0.00 0.00 5.01
1948 2644 7.307989 CCATATGCGTTTGTTAAGATTAGAGGG 60.308 40.741 0.00 0.00 0.00 4.30
2351 3058 5.947663 TGTGGTCTTCCTTCTTATCCAAAA 58.052 37.500 0.00 0.00 34.23 2.44
2403 3110 2.770164 AAGACAATTCTCAGACCCCG 57.230 50.000 0.00 0.00 0.00 5.73
3031 3755 4.870123 AAGCATTTTAAGTGGCATCACA 57.130 36.364 0.00 0.00 45.91 3.58
3032 3756 4.627035 GGAAAGCATTTTAAGTGGCATCAC 59.373 41.667 0.00 0.00 39.27 3.06
3196 3921 3.976793 TTCAAGCAGCAAGAAGAAGTG 57.023 42.857 0.00 0.00 0.00 3.16
3276 4001 5.532664 AGAACGGTTAGAAGACAAAGAGT 57.467 39.130 0.00 0.00 0.00 3.24
3277 4002 6.846325 AAAGAACGGTTAGAAGACAAAGAG 57.154 37.500 0.00 0.00 0.00 2.85
3278 4003 7.619964 AAAAAGAACGGTTAGAAGACAAAGA 57.380 32.000 0.00 0.00 0.00 2.52
3299 4024 4.158394 AGCAGCAAGAAGAAGTGACAAAAA 59.842 37.500 0.00 0.00 0.00 1.94
3300 4025 3.696051 AGCAGCAAGAAGAAGTGACAAAA 59.304 39.130 0.00 0.00 0.00 2.44
3301 4026 3.282021 AGCAGCAAGAAGAAGTGACAAA 58.718 40.909 0.00 0.00 0.00 2.83
3302 4027 2.923121 AGCAGCAAGAAGAAGTGACAA 58.077 42.857 0.00 0.00 0.00 3.18
3303 4028 2.615447 CAAGCAGCAAGAAGAAGTGACA 59.385 45.455 0.00 0.00 0.00 3.58
3304 4029 2.874701 TCAAGCAGCAAGAAGAAGTGAC 59.125 45.455 0.00 0.00 0.00 3.67
3305 4030 3.198409 TCAAGCAGCAAGAAGAAGTGA 57.802 42.857 0.00 0.00 0.00 3.41
3306 4031 3.976793 TTCAAGCAGCAAGAAGAAGTG 57.023 42.857 0.00 0.00 0.00 3.16
3307 4032 5.335504 GCTATTTCAAGCAGCAAGAAGAAGT 60.336 40.000 0.00 0.00 42.30 3.01
3308 4033 5.094134 GCTATTTCAAGCAGCAAGAAGAAG 58.906 41.667 0.00 1.41 42.30 2.85
3309 4034 4.763793 AGCTATTTCAAGCAGCAAGAAGAA 59.236 37.500 0.00 0.00 45.30 2.52
3310 4035 4.330250 AGCTATTTCAAGCAGCAAGAAGA 58.670 39.130 0.00 0.00 45.30 2.87
3311 4036 4.438472 GGAGCTATTTCAAGCAGCAAGAAG 60.438 45.833 0.00 0.00 45.30 2.85
3312 4037 3.441572 GGAGCTATTTCAAGCAGCAAGAA 59.558 43.478 0.00 0.00 45.30 2.52
3313 4038 3.012518 GGAGCTATTTCAAGCAGCAAGA 58.987 45.455 0.00 0.00 45.30 3.02
3314 4039 3.015327 AGGAGCTATTTCAAGCAGCAAG 58.985 45.455 0.00 0.00 45.30 4.01
3315 4040 3.077484 AGGAGCTATTTCAAGCAGCAA 57.923 42.857 0.00 0.00 45.30 3.91
3316 4041 2.795231 AGGAGCTATTTCAAGCAGCA 57.205 45.000 0.00 0.00 45.30 4.41
3317 4042 2.357323 GGAAGGAGCTATTTCAAGCAGC 59.643 50.000 10.75 0.00 45.30 5.25
3318 4043 3.883669 AGGAAGGAGCTATTTCAAGCAG 58.116 45.455 10.75 0.00 45.30 4.24
3319 4044 4.012374 CAAGGAAGGAGCTATTTCAAGCA 58.988 43.478 10.75 0.00 45.30 3.91
3320 4045 4.013050 ACAAGGAAGGAGCTATTTCAAGC 58.987 43.478 10.75 0.00 43.11 4.01
3321 4046 7.106239 TCTTACAAGGAAGGAGCTATTTCAAG 58.894 38.462 10.75 6.32 0.00 3.02
3322 4047 7.016153 TCTTACAAGGAAGGAGCTATTTCAA 57.984 36.000 10.75 0.00 0.00 2.69
3323 4048 6.620877 TCTTACAAGGAAGGAGCTATTTCA 57.379 37.500 10.75 0.00 0.00 2.69
3324 4049 7.386573 GCTATCTTACAAGGAAGGAGCTATTTC 59.613 40.741 10.69 0.00 35.04 2.17
3325 4050 7.071824 AGCTATCTTACAAGGAAGGAGCTATTT 59.928 37.037 16.10 0.00 40.94 1.40
3326 4051 6.556874 AGCTATCTTACAAGGAAGGAGCTATT 59.443 38.462 16.10 0.00 40.94 1.73
3327 4052 6.014669 CAGCTATCTTACAAGGAAGGAGCTAT 60.015 42.308 16.79 1.17 40.86 2.97
3328 4053 5.303078 CAGCTATCTTACAAGGAAGGAGCTA 59.697 44.000 16.79 0.00 40.86 3.32
3329 4054 4.100808 CAGCTATCTTACAAGGAAGGAGCT 59.899 45.833 13.39 13.39 42.23 4.09
3330 4055 4.376146 CAGCTATCTTACAAGGAAGGAGC 58.624 47.826 10.21 10.21 36.68 4.70
3331 4056 4.202305 CCCAGCTATCTTACAAGGAAGGAG 60.202 50.000 0.00 0.00 0.00 3.69
3332 4057 3.711704 CCCAGCTATCTTACAAGGAAGGA 59.288 47.826 0.00 0.00 0.00 3.36
3333 4058 3.456277 ACCCAGCTATCTTACAAGGAAGG 59.544 47.826 0.00 0.00 0.00 3.46
3334 4059 4.762289 ACCCAGCTATCTTACAAGGAAG 57.238 45.455 0.00 0.00 0.00 3.46
3335 4060 5.278061 ACTACCCAGCTATCTTACAAGGAA 58.722 41.667 0.00 0.00 0.00 3.36
3336 4061 4.880164 ACTACCCAGCTATCTTACAAGGA 58.120 43.478 0.00 0.00 0.00 3.36
3337 4062 6.726490 TTACTACCCAGCTATCTTACAAGG 57.274 41.667 0.00 0.00 0.00 3.61
3343 4068 8.989131 TGAGTTAATTTACTACCCAGCTATCTT 58.011 33.333 0.00 0.00 0.00 2.40
3344 4069 8.548880 TGAGTTAATTTACTACCCAGCTATCT 57.451 34.615 0.00 0.00 0.00 1.98
3345 4070 9.780186 AATGAGTTAATTTACTACCCAGCTATC 57.220 33.333 0.00 0.00 0.00 2.08
3347 4072 9.391006 CAAATGAGTTAATTTACTACCCAGCTA 57.609 33.333 0.00 0.00 0.00 3.32
3348 4073 7.339466 CCAAATGAGTTAATTTACTACCCAGCT 59.661 37.037 0.00 0.00 0.00 4.24
3349 4074 7.122204 ACCAAATGAGTTAATTTACTACCCAGC 59.878 37.037 0.00 0.00 0.00 4.85
3350 4075 8.458843 CACCAAATGAGTTAATTTACTACCCAG 58.541 37.037 0.00 0.00 0.00 4.45
3351 4076 7.094118 GCACCAAATGAGTTAATTTACTACCCA 60.094 37.037 0.00 0.00 0.00 4.51
3352 4077 7.122204 AGCACCAAATGAGTTAATTTACTACCC 59.878 37.037 0.00 0.00 0.00 3.69
3353 4078 8.051901 AGCACCAAATGAGTTAATTTACTACC 57.948 34.615 0.00 0.00 0.00 3.18
3355 4080 9.953565 ACTAGCACCAAATGAGTTAATTTACTA 57.046 29.630 0.00 0.00 0.00 1.82
3356 4081 8.730680 CACTAGCACCAAATGAGTTAATTTACT 58.269 33.333 0.00 0.00 0.00 2.24
3357 4082 7.484959 GCACTAGCACCAAATGAGTTAATTTAC 59.515 37.037 0.00 0.00 41.58 2.01
3358 4083 7.393234 AGCACTAGCACCAAATGAGTTAATTTA 59.607 33.333 0.00 0.00 45.49 1.40
3359 4084 6.209391 AGCACTAGCACCAAATGAGTTAATTT 59.791 34.615 0.00 0.00 45.49 1.82
3360 4085 5.711976 AGCACTAGCACCAAATGAGTTAATT 59.288 36.000 0.00 0.00 45.49 1.40
3361 4086 5.256474 AGCACTAGCACCAAATGAGTTAAT 58.744 37.500 0.00 0.00 45.49 1.40
3362 4087 4.651778 AGCACTAGCACCAAATGAGTTAA 58.348 39.130 0.00 0.00 45.49 2.01
3363 4088 4.286297 AGCACTAGCACCAAATGAGTTA 57.714 40.909 0.00 0.00 45.49 2.24
3364 4089 3.146104 AGCACTAGCACCAAATGAGTT 57.854 42.857 0.00 0.00 45.49 3.01
3365 4090 2.867109 AGCACTAGCACCAAATGAGT 57.133 45.000 0.00 0.00 45.49 3.41
3366 4091 5.124457 ACATAAAGCACTAGCACCAAATGAG 59.876 40.000 0.00 0.00 45.49 2.90
3367 4092 5.009631 ACATAAAGCACTAGCACCAAATGA 58.990 37.500 0.00 0.00 45.49 2.57
3368 4093 5.314923 ACATAAAGCACTAGCACCAAATG 57.685 39.130 0.00 0.00 45.49 2.32
3369 4094 5.982890 AACATAAAGCACTAGCACCAAAT 57.017 34.783 0.00 0.00 45.49 2.32
3370 4095 8.568676 TTATAACATAAAGCACTAGCACCAAA 57.431 30.769 0.00 0.00 45.49 3.28
3371 4096 8.746052 ATTATAACATAAAGCACTAGCACCAA 57.254 30.769 0.00 0.00 45.49 3.67
3616 4535 4.217550 CCGACCCAAATTAATTGACACAGT 59.782 41.667 0.39 0.00 41.85 3.55
3632 4551 0.561184 ATGATACTCCCTCCGACCCA 59.439 55.000 0.00 0.00 0.00 4.51
4298 5222 6.322201 CAGTACATTAGATCCAGCCCATTTTT 59.678 38.462 0.00 0.00 0.00 1.94
4429 5359 1.202348 GCAACATTAACCCTGCCACTC 59.798 52.381 0.00 0.00 0.00 3.51
4534 5464 7.270047 CCAACGTCTTATATTTAGGAGTGGAA 58.730 38.462 0.00 0.00 0.00 3.53
4749 5684 3.761897 ACCCTCATCTTAGAGATCTCCG 58.238 50.000 19.30 8.37 37.87 4.63
5379 6360 0.948678 GCGCACAAAGTGGTAAAGGA 59.051 50.000 0.30 0.00 33.64 3.36
5617 9321 5.499004 TCATAGGCAGGGGTATGATTAAC 57.501 43.478 0.00 0.00 31.97 2.01
6344 10523 9.099454 GGACCACAATATACTAGTTCAGAAAAG 57.901 37.037 0.00 0.00 0.00 2.27
7073 11272 0.836400 TGGAGAAGGGCTTCGAGGTT 60.836 55.000 0.00 0.00 43.97 3.50
7379 11583 3.456380 TTTCCATTCCCTTCCTTGAGG 57.544 47.619 0.00 0.00 36.52 3.86
7473 11704 3.860930 TTCAAACCCGGGCCTCTGC 62.861 63.158 24.08 0.00 0.00 4.26
7474 11705 0.611896 AATTCAAACCCGGGCCTCTG 60.612 55.000 24.08 13.01 0.00 3.35
7475 11706 0.611896 CAATTCAAACCCGGGCCTCT 60.612 55.000 24.08 0.00 0.00 3.69
7476 11707 0.610785 TCAATTCAAACCCGGGCCTC 60.611 55.000 24.08 0.00 0.00 4.70
7477 11708 0.178947 TTCAATTCAAACCCGGGCCT 60.179 50.000 24.08 4.73 0.00 5.19
7478 11709 0.037697 GTTCAATTCAAACCCGGGCC 60.038 55.000 24.08 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.