Multiple sequence alignment - TraesCS6B01G300800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G300800 chr6B 100.000 3667 0 0 1 3667 539180554 539176888 0.000000e+00 6772.0
1 TraesCS6B01G300800 chr6D 90.500 1779 115 19 891 2624 357581155 357579386 0.000000e+00 2300.0
2 TraesCS6B01G300800 chr6D 90.705 624 38 11 3057 3667 357577705 357577089 0.000000e+00 813.0
3 TraesCS6B01G300800 chr6D 81.230 618 74 27 171 758 357581762 357581157 9.280000e-126 460.0
4 TraesCS6B01G300800 chr6D 87.069 116 12 3 2773 2886 357578583 357578469 1.070000e-25 128.0
5 TraesCS6B01G300800 chr6A 86.776 794 73 16 2007 2772 499658741 499657952 0.000000e+00 856.0
6 TraesCS6B01G300800 chr6A 90.038 532 34 10 3147 3667 499655502 499654979 0.000000e+00 671.0
7 TraesCS6B01G300800 chr5B 78.449 877 140 35 1091 1944 479714027 479713177 9.020000e-146 527.0
8 TraesCS6B01G300800 chr5A 78.091 817 140 18 1090 1891 504932828 504932036 7.120000e-132 481.0
9 TraesCS6B01G300800 chr3A 100.000 28 0 0 522 549 449517828 449517801 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G300800 chr6B 539176888 539180554 3666 True 6772.00 6772 100.000 1 3667 1 chr6B.!!$R1 3666
1 TraesCS6B01G300800 chr6D 357577089 357581762 4673 True 925.25 2300 87.376 171 3667 4 chr6D.!!$R1 3496
2 TraesCS6B01G300800 chr6A 499654979 499658741 3762 True 763.50 856 88.407 2007 3667 2 chr6A.!!$R1 1660
3 TraesCS6B01G300800 chr5B 479713177 479714027 850 True 527.00 527 78.449 1091 1944 1 chr5B.!!$R1 853
4 TraesCS6B01G300800 chr5A 504932036 504932828 792 True 481.00 481 78.091 1090 1891 1 chr5A.!!$R1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 860 0.031616 GAGGAGTGGAGGAGGGACAT 60.032 60.0 0.0 0.0 0.0 3.06 F
994 1023 0.255033 ATGAGCCGACCCTAAAACCC 59.745 55.0 0.0 0.0 0.0 4.11 F
2364 2422 0.321653 CAAGCTACCAGACCACCACC 60.322 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 2394 0.036732 CTGGTAGCTTGGCAACTCCA 59.963 55.0 0.00 7.95 44.85 3.86 R
2373 2431 0.238289 GTAGCAAAGAAGCAGCGCAA 59.762 50.0 11.47 0.00 36.85 4.85 R
3632 6851 0.110486 ATGCAGGTCGTTCAAAGGGT 59.890 50.0 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.927668 TTATCTTTCATATCTCACATATTGCGA 57.072 29.630 0.00 0.00 0.00 5.10
60 61 7.880059 TCTTTCATATCTCACATATTGCGAG 57.120 36.000 0.00 0.00 0.00 5.03
61 62 7.436933 TCTTTCATATCTCACATATTGCGAGT 58.563 34.615 0.00 0.00 29.26 4.18
62 63 7.596621 TCTTTCATATCTCACATATTGCGAGTC 59.403 37.037 0.00 0.00 29.26 3.36
63 64 6.581171 TCATATCTCACATATTGCGAGTCT 57.419 37.500 0.00 0.00 29.26 3.24
64 65 7.687941 TCATATCTCACATATTGCGAGTCTA 57.312 36.000 0.00 0.00 29.26 2.59
65 66 8.110860 TCATATCTCACATATTGCGAGTCTAA 57.889 34.615 0.00 0.00 29.26 2.10
66 67 8.023706 TCATATCTCACATATTGCGAGTCTAAC 58.976 37.037 0.00 0.00 29.26 2.34
67 68 5.836821 TCTCACATATTGCGAGTCTAACT 57.163 39.130 0.00 0.00 29.26 2.24
68 69 6.937436 TCTCACATATTGCGAGTCTAACTA 57.063 37.500 0.00 0.00 29.26 2.24
69 70 6.726230 TCTCACATATTGCGAGTCTAACTAC 58.274 40.000 0.00 0.00 29.26 2.73
70 71 6.542735 TCTCACATATTGCGAGTCTAACTACT 59.457 38.462 0.00 0.00 29.26 2.57
71 72 6.726230 TCACATATTGCGAGTCTAACTACTC 58.274 40.000 0.00 0.00 42.09 2.59
72 73 6.542735 TCACATATTGCGAGTCTAACTACTCT 59.457 38.462 0.00 0.00 43.11 3.24
73 74 7.067129 TCACATATTGCGAGTCTAACTACTCTT 59.933 37.037 0.00 0.00 43.11 2.85
74 75 7.377397 CACATATTGCGAGTCTAACTACTCTTC 59.623 40.741 0.00 0.00 43.11 2.87
75 76 7.283580 ACATATTGCGAGTCTAACTACTCTTCT 59.716 37.037 0.00 0.00 43.11 2.85
76 77 5.961396 TTGCGAGTCTAACTACTCTTCTT 57.039 39.130 0.00 0.00 43.11 2.52
77 78 5.548706 TGCGAGTCTAACTACTCTTCTTC 57.451 43.478 0.00 0.00 43.11 2.87
78 79 5.247084 TGCGAGTCTAACTACTCTTCTTCT 58.753 41.667 0.00 0.00 43.11 2.85
79 80 5.706369 TGCGAGTCTAACTACTCTTCTTCTT 59.294 40.000 0.00 0.00 43.11 2.52
80 81 6.207025 TGCGAGTCTAACTACTCTTCTTCTTT 59.793 38.462 0.00 0.00 43.11 2.52
81 82 7.085746 GCGAGTCTAACTACTCTTCTTCTTTT 58.914 38.462 0.00 0.00 43.11 2.27
82 83 7.595875 GCGAGTCTAACTACTCTTCTTCTTTTT 59.404 37.037 0.00 0.00 43.11 1.94
83 84 8.907685 CGAGTCTAACTACTCTTCTTCTTTTTG 58.092 37.037 0.00 0.00 43.11 2.44
84 85 8.596271 AGTCTAACTACTCTTCTTCTTTTTGC 57.404 34.615 0.00 0.00 0.00 3.68
85 86 7.382759 AGTCTAACTACTCTTCTTCTTTTTGCG 59.617 37.037 0.00 0.00 0.00 4.85
86 87 5.674933 AACTACTCTTCTTCTTTTTGCGG 57.325 39.130 0.00 0.00 0.00 5.69
87 88 4.065789 ACTACTCTTCTTCTTTTTGCGGG 58.934 43.478 0.00 0.00 0.00 6.13
88 89 2.932261 ACTCTTCTTCTTTTTGCGGGT 58.068 42.857 0.00 0.00 0.00 5.28
89 90 2.618709 ACTCTTCTTCTTTTTGCGGGTG 59.381 45.455 0.00 0.00 0.00 4.61
90 91 2.878406 CTCTTCTTCTTTTTGCGGGTGA 59.122 45.455 0.00 0.00 0.00 4.02
91 92 3.283751 TCTTCTTCTTTTTGCGGGTGAA 58.716 40.909 0.00 0.00 0.00 3.18
92 93 3.066203 TCTTCTTCTTTTTGCGGGTGAAC 59.934 43.478 0.00 0.00 0.00 3.18
93 94 2.650322 TCTTCTTTTTGCGGGTGAACT 58.350 42.857 0.00 0.00 0.00 3.01
94 95 3.811083 TCTTCTTTTTGCGGGTGAACTA 58.189 40.909 0.00 0.00 0.00 2.24
95 96 3.562557 TCTTCTTTTTGCGGGTGAACTAC 59.437 43.478 0.00 0.00 0.00 2.73
114 115 8.337741 GAACTACCGTTCTTCACTATATGAAC 57.662 38.462 0.00 0.00 44.80 3.18
115 116 7.400599 ACTACCGTTCTTCACTATATGAACA 57.599 36.000 0.00 0.00 42.62 3.18
116 117 8.008513 ACTACCGTTCTTCACTATATGAACAT 57.991 34.615 0.00 0.00 42.62 2.71
117 118 8.475639 ACTACCGTTCTTCACTATATGAACATT 58.524 33.333 0.00 0.00 42.62 2.71
118 119 7.539712 ACCGTTCTTCACTATATGAACATTG 57.460 36.000 0.00 0.00 42.62 2.82
119 120 7.327975 ACCGTTCTTCACTATATGAACATTGA 58.672 34.615 0.00 0.00 42.62 2.57
120 121 7.987458 ACCGTTCTTCACTATATGAACATTGAT 59.013 33.333 0.00 0.00 42.62 2.57
121 122 8.830580 CCGTTCTTCACTATATGAACATTGATT 58.169 33.333 0.00 0.00 42.62 2.57
122 123 9.855361 CGTTCTTCACTATATGAACATTGATTC 57.145 33.333 0.00 0.00 42.62 2.52
150 151 7.945033 ACATTGTTATGAATTTCCACAACAC 57.055 32.000 7.63 0.00 35.65 3.32
151 152 6.928492 ACATTGTTATGAATTTCCACAACACC 59.072 34.615 7.63 0.00 35.65 4.16
152 153 5.461032 TGTTATGAATTTCCACAACACCC 57.539 39.130 0.00 0.00 0.00 4.61
153 154 4.282195 TGTTATGAATTTCCACAACACCCC 59.718 41.667 0.00 0.00 0.00 4.95
154 155 1.323412 TGAATTTCCACAACACCCCG 58.677 50.000 0.00 0.00 0.00 5.73
155 156 0.038618 GAATTTCCACAACACCCCGC 60.039 55.000 0.00 0.00 0.00 6.13
156 157 1.801309 AATTTCCACAACACCCCGCG 61.801 55.000 0.00 0.00 0.00 6.46
157 158 4.939368 TTCCACAACACCCCGCGG 62.939 66.667 21.04 21.04 0.00 6.46
186 187 3.228453 TCTAGTTGGACAAAGAGACGGT 58.772 45.455 0.00 0.00 0.00 4.83
200 201 2.897207 CGGTCCCGTGATTGGCTA 59.103 61.111 0.00 0.00 34.35 3.93
204 205 1.653151 GTCCCGTGATTGGCTAGAAC 58.347 55.000 0.00 0.00 0.00 3.01
220 221 0.466922 GAACTGCCATCCATCCAGGG 60.467 60.000 0.00 0.00 38.24 4.45
221 222 2.203451 CTGCCATCCATCCAGGGC 60.203 66.667 0.00 0.00 46.58 5.19
280 281 2.283298 CTACAATCGTCTGCAAGGCAT 58.717 47.619 0.00 0.00 39.79 4.40
291 292 4.077108 TCTGCAAGGCATGATCCATATTC 58.923 43.478 0.00 0.00 38.13 1.75
312 313 2.346365 GGGGGAACTCACGTGGAC 59.654 66.667 17.00 4.79 0.00 4.02
350 351 1.222936 CCCCCAGCAGATCTGTGTC 59.777 63.158 23.38 7.61 41.25 3.67
354 355 1.270414 CCAGCAGATCTGTGTCCCCT 61.270 60.000 23.38 8.40 41.25 4.79
356 357 1.222936 GCAGATCTGTGTCCCCTGG 59.777 63.158 23.38 0.00 0.00 4.45
360 361 2.262774 GATCTGTGTCCCCTGGCTGG 62.263 65.000 2.96 2.96 0.00 4.85
382 383 1.881324 CTTTTTAAAAGACCGCCCGGA 59.119 47.619 14.44 0.00 38.96 5.14
383 384 1.237533 TTTTAAAAGACCGCCCGGAC 58.762 50.000 14.44 7.44 38.96 4.79
401 402 2.104928 CGCGAGCTGCCACATCTA 59.895 61.111 0.00 0.00 42.08 1.98
402 403 1.948138 CGCGAGCTGCCACATCTAG 60.948 63.158 0.00 0.00 42.08 2.43
405 406 2.202987 AGCTGCCACATCTAGCGC 60.203 61.111 0.00 0.00 42.10 5.92
406 407 2.512286 GCTGCCACATCTAGCGCA 60.512 61.111 11.47 0.00 0.00 6.09
408 409 1.442526 GCTGCCACATCTAGCGCATT 61.443 55.000 11.47 0.00 0.00 3.56
459 460 4.491676 CAATGGAGGTCTTTGCAGATTTG 58.508 43.478 0.00 0.00 0.00 2.32
473 474 6.915544 TGCAGATTTGTTTTTGCAACATAA 57.084 29.167 0.00 0.00 42.96 1.90
477 478 8.003784 GCAGATTTGTTTTTGCAACATAAGTAC 58.996 33.333 0.00 0.00 36.59 2.73
478 479 8.487176 CAGATTTGTTTTTGCAACATAAGTACC 58.513 33.333 0.00 0.00 0.00 3.34
500 501 4.283678 CGTTGCGGATTTCTTTACAACAA 58.716 39.130 0.00 0.00 37.77 2.83
505 506 4.915667 GCGGATTTCTTTACAACAAAGGTC 59.084 41.667 0.00 0.00 0.00 3.85
510 511 7.979537 GGATTTCTTTACAACAAAGGTCTTGTT 59.020 33.333 0.00 0.00 42.75 2.83
511 512 9.366216 GATTTCTTTACAACAAAGGTCTTGTTT 57.634 29.630 0.21 0.00 40.30 2.83
517 518 6.584185 ACAACAAAGGTCTTGTTTTGTAGT 57.416 33.333 3.37 0.00 44.32 2.73
518 519 6.988522 ACAACAAAGGTCTTGTTTTGTAGTT 58.011 32.000 3.37 0.00 44.32 2.24
519 520 7.438564 ACAACAAAGGTCTTGTTTTGTAGTTT 58.561 30.769 3.37 0.00 44.32 2.66
520 521 7.597369 ACAACAAAGGTCTTGTTTTGTAGTTTC 59.403 33.333 3.37 0.00 44.32 2.78
584 585 5.329035 ACATAAATCATGTTGCAGGAACC 57.671 39.130 1.83 0.00 46.01 3.62
585 586 4.771577 ACATAAATCATGTTGCAGGAACCA 59.228 37.500 1.83 0.00 46.01 3.67
601 602 4.012895 CATTGCGGCGGCGGTATC 62.013 66.667 33.02 16.47 44.10 2.24
625 653 1.809209 GCGACTGAGCTTGCTCCTC 60.809 63.158 18.48 12.16 0.00 3.71
626 654 1.153667 CGACTGAGCTTGCTCCTCC 60.154 63.158 18.48 7.45 0.00 4.30
634 662 2.203788 TTGCTCCTCCAGGACGGT 60.204 61.111 0.00 0.00 39.78 4.83
647 675 4.955774 ACGGTGGCGACGTGGAAC 62.956 66.667 0.11 0.00 43.78 3.62
651 679 3.923864 TGGCGACGTGGAACAGCT 61.924 61.111 0.11 0.00 41.80 4.24
654 682 2.029073 CGACGTGGAACAGCTGGT 59.971 61.111 19.93 12.79 41.80 4.00
655 683 2.310233 CGACGTGGAACAGCTGGTG 61.310 63.158 19.93 5.12 41.80 4.17
658 686 2.280797 GTGGAACAGCTGGTGCGA 60.281 61.111 19.06 5.04 41.80 5.10
661 689 2.029844 GGAACAGCTGGTGCGACTC 61.030 63.158 19.93 0.00 45.42 3.36
700 729 3.005539 AGGCGGGTGATGCAGTCT 61.006 61.111 0.00 0.00 0.00 3.24
707 736 3.709633 TGATGCAGTCTGGCGGCT 61.710 61.111 11.43 0.00 39.09 5.52
714 743 1.984570 AGTCTGGCGGCTTCTAGCA 60.985 57.895 11.43 0.00 44.75 3.49
717 746 3.003173 TGGCGGCTTCTAGCACCT 61.003 61.111 11.43 0.00 44.75 4.00
718 747 2.512515 GGCGGCTTCTAGCACCTG 60.513 66.667 0.00 0.00 44.75 4.00
758 787 3.462678 GGTGGCCGTCTCCTCTCC 61.463 72.222 0.00 0.00 0.00 3.71
759 788 2.363147 GTGGCCGTCTCCTCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
760 789 2.043852 TGGCCGTCTCCTCTCCTC 60.044 66.667 0.00 0.00 0.00 3.71
761 790 2.277404 GGCCGTCTCCTCTCCTCT 59.723 66.667 0.00 0.00 0.00 3.69
762 791 1.380650 GGCCGTCTCCTCTCCTCTT 60.381 63.158 0.00 0.00 0.00 2.85
763 792 0.106619 GGCCGTCTCCTCTCCTCTTA 60.107 60.000 0.00 0.00 0.00 2.10
764 793 1.314730 GCCGTCTCCTCTCCTCTTAG 58.685 60.000 0.00 0.00 0.00 2.18
765 794 1.314730 CCGTCTCCTCTCCTCTTAGC 58.685 60.000 0.00 0.00 0.00 3.09
766 795 1.314730 CGTCTCCTCTCCTCTTAGCC 58.685 60.000 0.00 0.00 0.00 3.93
767 796 1.314730 GTCTCCTCTCCTCTTAGCCG 58.685 60.000 0.00 0.00 0.00 5.52
768 797 0.466555 TCTCCTCTCCTCTTAGCCGC 60.467 60.000 0.00 0.00 0.00 6.53
769 798 1.791103 CTCCTCTCCTCTTAGCCGCG 61.791 65.000 0.00 0.00 0.00 6.46
770 799 2.122167 CCTCTCCTCTTAGCCGCGT 61.122 63.158 4.92 0.00 0.00 6.01
771 800 1.064946 CTCTCCTCTTAGCCGCGTG 59.935 63.158 4.92 0.00 0.00 5.34
772 801 1.377366 CTCTCCTCTTAGCCGCGTGA 61.377 60.000 4.92 0.00 0.00 4.35
773 802 0.963856 TCTCCTCTTAGCCGCGTGAA 60.964 55.000 4.92 0.00 0.00 3.18
774 803 0.526524 CTCCTCTTAGCCGCGTGAAG 60.527 60.000 4.92 5.43 0.00 3.02
775 804 0.963856 TCCTCTTAGCCGCGTGAAGA 60.964 55.000 4.92 9.72 0.00 2.87
776 805 0.108804 CCTCTTAGCCGCGTGAAGAA 60.109 55.000 4.92 0.00 0.00 2.52
777 806 0.992802 CTCTTAGCCGCGTGAAGAAC 59.007 55.000 4.92 0.00 0.00 3.01
793 822 7.653767 GTGAAGAACGAGATAAGAAAAGGAA 57.346 36.000 0.00 0.00 0.00 3.36
794 823 8.084590 GTGAAGAACGAGATAAGAAAAGGAAA 57.915 34.615 0.00 0.00 0.00 3.13
795 824 8.224437 GTGAAGAACGAGATAAGAAAAGGAAAG 58.776 37.037 0.00 0.00 0.00 2.62
796 825 8.148351 TGAAGAACGAGATAAGAAAAGGAAAGA 58.852 33.333 0.00 0.00 0.00 2.52
797 826 8.541133 AAGAACGAGATAAGAAAAGGAAAGAG 57.459 34.615 0.00 0.00 0.00 2.85
798 827 7.897864 AGAACGAGATAAGAAAAGGAAAGAGA 58.102 34.615 0.00 0.00 0.00 3.10
799 828 7.815549 AGAACGAGATAAGAAAAGGAAAGAGAC 59.184 37.037 0.00 0.00 0.00 3.36
800 829 6.094061 ACGAGATAAGAAAAGGAAAGAGACG 58.906 40.000 0.00 0.00 0.00 4.18
801 830 6.072064 ACGAGATAAGAAAAGGAAAGAGACGA 60.072 38.462 0.00 0.00 0.00 4.20
802 831 6.251801 CGAGATAAGAAAAGGAAAGAGACGAC 59.748 42.308 0.00 0.00 0.00 4.34
803 832 6.094061 AGATAAGAAAAGGAAAGAGACGACG 58.906 40.000 0.00 0.00 0.00 5.12
804 833 3.027974 AGAAAAGGAAAGAGACGACGG 57.972 47.619 0.00 0.00 0.00 4.79
805 834 2.067013 GAAAAGGAAAGAGACGACGGG 58.933 52.381 0.00 0.00 0.00 5.28
806 835 0.320697 AAAGGAAAGAGACGACGGGG 59.679 55.000 0.00 0.00 0.00 5.73
807 836 0.541296 AAGGAAAGAGACGACGGGGA 60.541 55.000 0.00 0.00 0.00 4.81
808 837 0.541296 AGGAAAGAGACGACGGGGAA 60.541 55.000 0.00 0.00 0.00 3.97
809 838 0.108756 GGAAAGAGACGACGGGGAAG 60.109 60.000 0.00 0.00 0.00 3.46
810 839 0.886563 GAAAGAGACGACGGGGAAGA 59.113 55.000 0.00 0.00 0.00 2.87
811 840 1.271656 GAAAGAGACGACGGGGAAGAA 59.728 52.381 0.00 0.00 0.00 2.52
812 841 0.889306 AAGAGACGACGGGGAAGAAG 59.111 55.000 0.00 0.00 0.00 2.85
813 842 0.037877 AGAGACGACGGGGAAGAAGA 59.962 55.000 0.00 0.00 0.00 2.87
814 843 0.452585 GAGACGACGGGGAAGAAGAG 59.547 60.000 0.00 0.00 0.00 2.85
815 844 0.966370 AGACGACGGGGAAGAAGAGG 60.966 60.000 0.00 0.00 0.00 3.69
816 845 0.964358 GACGACGGGGAAGAAGAGGA 60.964 60.000 0.00 0.00 0.00 3.71
817 846 0.966370 ACGACGGGGAAGAAGAGGAG 60.966 60.000 0.00 0.00 0.00 3.69
818 847 0.966370 CGACGGGGAAGAAGAGGAGT 60.966 60.000 0.00 0.00 0.00 3.85
819 848 0.533032 GACGGGGAAGAAGAGGAGTG 59.467 60.000 0.00 0.00 0.00 3.51
820 849 0.905337 ACGGGGAAGAAGAGGAGTGG 60.905 60.000 0.00 0.00 0.00 4.00
821 850 0.614979 CGGGGAAGAAGAGGAGTGGA 60.615 60.000 0.00 0.00 0.00 4.02
822 851 1.199615 GGGGAAGAAGAGGAGTGGAG 58.800 60.000 0.00 0.00 0.00 3.86
823 852 1.199615 GGGAAGAAGAGGAGTGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
824 853 1.273324 GGGAAGAAGAGGAGTGGAGGA 60.273 57.143 0.00 0.00 0.00 3.71
825 854 2.107366 GGAAGAAGAGGAGTGGAGGAG 58.893 57.143 0.00 0.00 0.00 3.69
826 855 2.107366 GAAGAAGAGGAGTGGAGGAGG 58.893 57.143 0.00 0.00 0.00 4.30
827 856 0.338120 AGAAGAGGAGTGGAGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
828 857 0.336737 GAAGAGGAGTGGAGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
829 858 0.041982 AAGAGGAGTGGAGGAGGGAC 59.958 60.000 0.00 0.00 0.00 4.46
830 859 1.149782 AGAGGAGTGGAGGAGGGACA 61.150 60.000 0.00 0.00 0.00 4.02
831 860 0.031616 GAGGAGTGGAGGAGGGACAT 60.032 60.000 0.00 0.00 0.00 3.06
832 861 0.031616 AGGAGTGGAGGAGGGACATC 60.032 60.000 0.00 0.00 0.00 3.06
833 862 1.395826 GGAGTGGAGGAGGGACATCG 61.396 65.000 0.00 0.00 0.00 3.84
834 863 1.381872 AGTGGAGGAGGGACATCGG 60.382 63.158 0.00 0.00 0.00 4.18
835 864 1.686110 GTGGAGGAGGGACATCGGT 60.686 63.158 0.00 0.00 0.00 4.69
836 865 0.396695 GTGGAGGAGGGACATCGGTA 60.397 60.000 0.00 0.00 0.00 4.02
837 866 0.337082 TGGAGGAGGGACATCGGTAA 59.663 55.000 0.00 0.00 0.00 2.85
838 867 1.273381 TGGAGGAGGGACATCGGTAAA 60.273 52.381 0.00 0.00 0.00 2.01
839 868 1.835531 GGAGGAGGGACATCGGTAAAA 59.164 52.381 0.00 0.00 0.00 1.52
840 869 2.237893 GGAGGAGGGACATCGGTAAAAA 59.762 50.000 0.00 0.00 0.00 1.94
841 870 3.532542 GAGGAGGGACATCGGTAAAAAG 58.467 50.000 0.00 0.00 0.00 2.27
842 871 3.178865 AGGAGGGACATCGGTAAAAAGA 58.821 45.455 0.00 0.00 0.00 2.52
843 872 3.197983 AGGAGGGACATCGGTAAAAAGAG 59.802 47.826 0.00 0.00 0.00 2.85
844 873 3.197116 GGAGGGACATCGGTAAAAAGAGA 59.803 47.826 0.00 0.00 0.00 3.10
845 874 4.182339 GAGGGACATCGGTAAAAAGAGAC 58.818 47.826 0.00 0.00 0.00 3.36
846 875 3.581332 AGGGACATCGGTAAAAAGAGACA 59.419 43.478 0.00 0.00 0.00 3.41
847 876 4.041198 AGGGACATCGGTAAAAAGAGACAA 59.959 41.667 0.00 0.00 0.00 3.18
848 877 4.392138 GGGACATCGGTAAAAAGAGACAAG 59.608 45.833 0.00 0.00 0.00 3.16
849 878 4.392138 GGACATCGGTAAAAAGAGACAAGG 59.608 45.833 0.00 0.00 0.00 3.61
850 879 3.751698 ACATCGGTAAAAAGAGACAAGGC 59.248 43.478 0.00 0.00 0.00 4.35
851 880 3.764237 TCGGTAAAAAGAGACAAGGCT 57.236 42.857 0.00 0.00 0.00 4.58
852 881 3.399330 TCGGTAAAAAGAGACAAGGCTG 58.601 45.455 0.00 0.00 0.00 4.85
853 882 2.484264 CGGTAAAAAGAGACAAGGCTGG 59.516 50.000 0.00 0.00 0.00 4.85
854 883 3.751518 GGTAAAAAGAGACAAGGCTGGA 58.248 45.455 0.00 0.00 0.00 3.86
855 884 3.753797 GGTAAAAAGAGACAAGGCTGGAG 59.246 47.826 0.00 0.00 0.00 3.86
856 885 3.864789 AAAAAGAGACAAGGCTGGAGA 57.135 42.857 0.00 0.00 0.00 3.71
857 886 3.415457 AAAAGAGACAAGGCTGGAGAG 57.585 47.619 0.00 0.00 0.00 3.20
858 887 1.274712 AAGAGACAAGGCTGGAGAGG 58.725 55.000 0.00 0.00 0.00 3.69
859 888 0.411452 AGAGACAAGGCTGGAGAGGA 59.589 55.000 0.00 0.00 0.00 3.71
860 889 0.823460 GAGACAAGGCTGGAGAGGAG 59.177 60.000 0.00 0.00 0.00 3.69
861 890 1.220477 GACAAGGCTGGAGAGGAGC 59.780 63.158 0.00 0.00 35.57 4.70
862 891 1.229464 ACAAGGCTGGAGAGGAGCT 60.229 57.895 0.00 0.00 36.63 4.09
863 892 1.264045 ACAAGGCTGGAGAGGAGCTC 61.264 60.000 4.71 4.71 43.17 4.09
864 893 0.977108 CAAGGCTGGAGAGGAGCTCT 60.977 60.000 14.64 0.00 44.28 4.09
865 894 0.977108 AAGGCTGGAGAGGAGCTCTG 60.977 60.000 14.64 0.00 41.35 3.35
866 895 2.433994 GGCTGGAGAGGAGCTCTGG 61.434 68.421 14.64 0.00 41.35 3.86
867 896 2.433994 GCTGGAGAGGAGCTCTGGG 61.434 68.421 14.64 0.00 41.35 4.45
868 897 2.364842 TGGAGAGGAGCTCTGGGC 60.365 66.667 14.64 0.00 41.35 5.36
938 967 4.527038 TCCGTCTGGTGATTAGAAGAGTTT 59.473 41.667 0.00 0.00 36.30 2.66
939 968 5.011738 TCCGTCTGGTGATTAGAAGAGTTTT 59.988 40.000 0.00 0.00 36.30 2.43
940 969 5.701290 CCGTCTGGTGATTAGAAGAGTTTTT 59.299 40.000 0.00 0.00 0.00 1.94
942 971 7.549488 CCGTCTGGTGATTAGAAGAGTTTTTAT 59.451 37.037 0.00 0.00 0.00 1.40
943 972 8.936864 CGTCTGGTGATTAGAAGAGTTTTTATT 58.063 33.333 0.00 0.00 0.00 1.40
994 1023 0.255033 ATGAGCCGACCCTAAAACCC 59.745 55.000 0.00 0.00 0.00 4.11
1002 1031 1.376295 CCCTAAAACCCCCGTCACG 60.376 63.158 0.00 0.00 0.00 4.35
1314 1346 4.636435 CGTGCCCGGAACCCAAGT 62.636 66.667 0.73 0.00 0.00 3.16
1319 1351 1.614226 CCCGGAACCCAAGTCCCTA 60.614 63.158 0.73 0.00 0.00 3.53
1320 1352 1.600638 CCGGAACCCAAGTCCCTAC 59.399 63.158 0.00 0.00 0.00 3.18
1409 1441 0.535102 CCAGGTTCAGCGTCAGGTTT 60.535 55.000 0.00 0.00 0.00 3.27
1437 1469 2.797866 CTTCGTCTACACGGCGCACT 62.798 60.000 10.83 0.00 46.70 4.40
1489 1521 3.880846 CGCTCCCCATCGCTTTGC 61.881 66.667 0.00 0.00 0.00 3.68
1501 1533 1.069296 TCGCTTTGCATTTCAAGACCG 60.069 47.619 0.00 0.00 35.84 4.79
1583 1627 0.663153 GCAAGTTCACCTTCACGCTT 59.337 50.000 0.00 0.00 0.00 4.68
1598 1642 1.592223 GCTTCACCTGTACCGCTCT 59.408 57.895 0.00 0.00 0.00 4.09
1640 1684 3.541072 TGGACGTCCAAGGTCGTT 58.459 55.556 34.60 0.00 44.35 3.85
1714 1758 3.256960 GGGGCTCTTCCACCACCA 61.257 66.667 0.00 0.00 36.21 4.17
1715 1759 2.616458 GGGGCTCTTCCACCACCAT 61.616 63.158 0.00 0.00 36.21 3.55
1723 1767 3.750371 TCTTCCACCACCATACAAACAG 58.250 45.455 0.00 0.00 0.00 3.16
1892 1945 1.455959 CGGCTGCCCCTACTACTCT 60.456 63.158 14.12 0.00 0.00 3.24
1899 1952 1.457009 CCCCTACTACTCTCGCAGCC 61.457 65.000 0.00 0.00 0.00 4.85
1937 1990 2.736721 CAAGGACACCATCAAGTACGTG 59.263 50.000 0.00 1.96 0.00 4.49
1958 2011 2.301583 GGAGATGGAGATCTACCAAGCC 59.698 54.545 15.14 12.83 39.19 4.35
1960 2013 3.387962 AGATGGAGATCTACCAAGCCAA 58.612 45.455 15.14 0.00 40.93 4.52
1970 2023 2.252260 CAAGCCAAACCGCTCACG 59.748 61.111 0.00 0.00 38.44 4.35
1991 2044 1.349026 CCCGAGGACAAGGCATATCAT 59.651 52.381 0.00 0.00 0.00 2.45
2072 2125 4.760047 ACGTGGAGCATGCCGGTC 62.760 66.667 15.66 5.36 41.64 4.79
2232 2290 1.298340 CGCATGTCTTACCCCACCA 59.702 57.895 0.00 0.00 0.00 4.17
2246 2304 3.838271 ACCATGAGCGTCGCCGAT 61.838 61.111 14.86 2.89 35.63 4.18
2249 2307 1.662760 CATGAGCGTCGCCGATGAT 60.663 57.895 14.86 2.81 35.63 2.45
2364 2422 0.321653 CAAGCTACCAGACCACCACC 60.322 60.000 0.00 0.00 0.00 4.61
2414 2472 2.939103 CGGGATCTCCAAACATCTCAAC 59.061 50.000 0.00 0.00 37.91 3.18
2435 2493 3.005897 ACACTACTGGCAGTACAAGTGAG 59.994 47.826 37.14 25.21 35.42 3.51
2454 2512 1.836802 AGGAATCCCTTGAGCAGACTC 59.163 52.381 0.00 0.00 40.78 3.36
2485 2543 6.092955 AGATGCAAATGTTTGTCATCAAGT 57.907 33.333 26.03 14.50 44.56 3.16
2486 2544 5.924254 AGATGCAAATGTTTGTCATCAAGTG 59.076 36.000 26.03 3.63 44.56 3.16
2500 2565 3.358707 TCAAGTGCATGAGTTTGCTTG 57.641 42.857 0.00 0.00 43.18 4.01
2504 2569 3.909430 AGTGCATGAGTTTGCTTGATTG 58.091 40.909 0.00 0.00 43.18 2.67
2517 2589 4.808558 TGCTTGATTGAAGGTGTTTATGC 58.191 39.130 0.00 0.00 31.56 3.14
2522 2594 7.517614 TTGATTGAAGGTGTTTATGCAGTTA 57.482 32.000 0.00 0.00 0.00 2.24
2526 2598 5.001232 TGAAGGTGTTTATGCAGTTAGACC 58.999 41.667 0.00 0.00 0.00 3.85
2546 2618 1.947013 CTGACCTGTGTGCAAGCTG 59.053 57.895 0.00 0.00 0.00 4.24
2552 2624 3.677648 GTGTGCAAGCTGGGCTGG 61.678 66.667 11.44 0.00 39.62 4.85
2554 2626 2.362120 GTGCAAGCTGGGCTGGAT 60.362 61.111 11.44 0.00 39.62 3.41
2557 2629 2.361992 CAAGCTGGGCTGGATGCA 60.362 61.111 0.00 0.00 45.15 3.96
2558 2630 2.044252 AAGCTGGGCTGGATGCAG 60.044 61.111 10.32 10.32 45.15 4.41
2564 2636 2.191641 GGCTGGATGCAGAGGGTC 59.808 66.667 19.59 0.00 45.15 4.46
2567 2639 1.028868 GCTGGATGCAGAGGGTCAAC 61.029 60.000 19.59 0.00 42.31 3.18
2590 2675 8.299570 CAACCCTGAATATATTTATGTTCTGCC 58.700 37.037 0.00 0.00 35.59 4.85
2591 2676 6.948309 ACCCTGAATATATTTATGTTCTGCCC 59.052 38.462 0.00 0.00 35.59 5.36
2602 2687 0.740737 GTTCTGCCCATGTACCATGC 59.259 55.000 0.00 0.00 0.00 4.06
2609 2694 2.912771 CCCATGTACCATGCGTCTTTA 58.087 47.619 0.00 0.00 0.00 1.85
2652 3359 9.869757 AGTATGTTTTTAGCTTGTCTTTGTTTT 57.130 25.926 0.00 0.00 0.00 2.43
2657 3364 9.349145 GTTTTTAGCTTGTCTTTGTTTTACAGA 57.651 29.630 0.00 0.00 0.00 3.41
2659 3366 9.515020 TTTTAGCTTGTCTTTGTTTTACAGATG 57.485 29.630 0.00 0.00 0.00 2.90
2693 3400 2.827642 GCATGAGCCTGCACTCCC 60.828 66.667 0.00 0.00 41.87 4.30
2720 3427 3.439154 TGCAAGCCTTTAATCCCATGAA 58.561 40.909 0.00 0.00 0.00 2.57
2735 3442 1.209019 CATGAACTAGCTGGACTGCCT 59.791 52.381 3.17 0.00 34.31 4.75
2736 3443 2.231716 TGAACTAGCTGGACTGCCTA 57.768 50.000 3.17 0.00 34.31 3.93
2738 3445 3.107601 TGAACTAGCTGGACTGCCTAAT 58.892 45.455 3.17 0.00 34.31 1.73
2739 3446 3.133003 TGAACTAGCTGGACTGCCTAATC 59.867 47.826 3.17 0.00 34.31 1.75
2740 3447 1.683917 ACTAGCTGGACTGCCTAATCG 59.316 52.381 3.17 0.00 34.31 3.34
2741 3448 0.389391 TAGCTGGACTGCCTAATCGC 59.611 55.000 0.00 0.00 34.31 4.58
2743 3450 0.878086 GCTGGACTGCCTAATCGCTC 60.878 60.000 0.00 0.00 34.31 5.03
2744 3451 0.749649 CTGGACTGCCTAATCGCTCT 59.250 55.000 0.00 0.00 34.31 4.09
2745 3452 0.747255 TGGACTGCCTAATCGCTCTC 59.253 55.000 0.00 0.00 34.31 3.20
2746 3453 1.036707 GGACTGCCTAATCGCTCTCT 58.963 55.000 0.00 0.00 0.00 3.10
2747 3454 1.269517 GGACTGCCTAATCGCTCTCTG 60.270 57.143 0.00 0.00 0.00 3.35
2750 3457 0.747255 TGCCTAATCGCTCTCTGGTC 59.253 55.000 0.00 0.00 0.00 4.02
2772 3479 2.236146 TGGATAACACTCCGTTGATGCT 59.764 45.455 0.00 0.00 38.63 3.79
2773 3480 2.609459 GGATAACACTCCGTTGATGCTG 59.391 50.000 0.00 0.00 38.63 4.41
2774 3481 2.093306 TAACACTCCGTTGATGCTGG 57.907 50.000 0.00 0.00 38.63 4.85
2777 3484 0.036952 CACTCCGTTGATGCTGGACT 60.037 55.000 0.00 0.00 0.00 3.85
2783 3526 2.673368 CCGTTGATGCTGGACTTAGTTC 59.327 50.000 0.00 0.00 0.00 3.01
2819 3562 4.506654 GCAGCATGTCCAAATCATGAATTC 59.493 41.667 0.00 0.00 43.47 2.17
2820 3563 5.047847 CAGCATGTCCAAATCATGAATTCC 58.952 41.667 0.00 0.00 43.47 3.01
2833 3576 8.961294 AATCATGAATTCCTTCAAAAACACAA 57.039 26.923 0.00 0.00 44.29 3.33
2834 3577 9.563748 AATCATGAATTCCTTCAAAAACACAAT 57.436 25.926 0.00 0.00 44.29 2.71
2835 3578 8.367943 TCATGAATTCCTTCAAAAACACAATG 57.632 30.769 2.27 0.00 44.29 2.82
2838 3581 8.783833 TGAATTCCTTCAAAAACACAATGAAA 57.216 26.923 2.27 0.00 38.43 2.69
2839 3582 8.663911 TGAATTCCTTCAAAAACACAATGAAAC 58.336 29.630 2.27 0.00 38.43 2.78
2841 3584 7.969536 TTCCTTCAAAAACACAATGAAACAA 57.030 28.000 0.00 0.00 33.08 2.83
2845 3588 9.063739 CCTTCAAAAACACAATGAAACAATTTG 57.936 29.630 0.00 0.00 33.08 2.32
2846 3589 9.609950 CTTCAAAAACACAATGAAACAATTTGT 57.390 25.926 0.00 0.00 33.08 2.83
2847 3590 9.604626 TTCAAAAACACAATGAAACAATTTGTC 57.395 25.926 1.83 0.00 31.48 3.18
2848 3591 8.233190 TCAAAAACACAATGAAACAATTTGTCC 58.767 29.630 1.83 0.00 31.48 4.02
2853 3596 7.525759 ACACAATGAAACAATTTGTCCAAAAC 58.474 30.769 1.83 0.00 31.48 2.43
2854 3597 7.173907 ACACAATGAAACAATTTGTCCAAAACA 59.826 29.630 1.83 0.00 31.48 2.83
2861 3604 7.459795 AACAATTTGTCCAAAACACCATTTT 57.540 28.000 1.83 0.00 37.70 1.82
2886 3629 6.718912 TGAACACAATTCAGATCCCAACATAA 59.281 34.615 0.00 0.00 0.00 1.90
2887 3630 7.396907 TGAACACAATTCAGATCCCAACATAAT 59.603 33.333 0.00 0.00 0.00 1.28
2888 3631 8.821686 AACACAATTCAGATCCCAACATAATA 57.178 30.769 0.00 0.00 0.00 0.98
2927 4253 4.955925 AGTTCAAACACAATCGTCAACA 57.044 36.364 0.00 0.00 0.00 3.33
2931 4257 4.407818 TCAAACACAATCGTCAACACAAC 58.592 39.130 0.00 0.00 0.00 3.32
2938 4264 0.943673 TCGTCAACACAACCATGCTG 59.056 50.000 0.00 0.00 0.00 4.41
2939 4265 0.661187 CGTCAACACAACCATGCTGC 60.661 55.000 0.00 0.00 0.00 5.25
2943 4269 2.074230 AACACAACCATGCTGCCACG 62.074 55.000 0.00 0.00 0.00 4.94
2961 4287 4.502645 GCCACGGCAATTGAAAATATGTAC 59.497 41.667 10.34 0.00 41.49 2.90
2966 4292 8.277018 CACGGCAATTGAAAATATGTACGTATA 58.723 33.333 10.34 0.00 31.20 1.47
2968 4319 7.473104 CGGCAATTGAAAATATGTACGTATACG 59.527 37.037 23.24 23.24 46.33 3.06
2984 4335 5.840250 CGTATACGTCAAAGAAAACCTGTC 58.160 41.667 17.16 0.00 34.11 3.51
2988 4339 4.920376 ACGTCAAAGAAAACCTGTCATTG 58.080 39.130 0.00 0.00 0.00 2.82
2994 4345 4.942761 AGAAAACCTGTCATTGCAATGT 57.057 36.364 32.67 15.56 37.65 2.71
3001 4352 9.553064 AAAACCTGTCATTGCAATGTTTTATAA 57.447 25.926 32.67 13.89 34.52 0.98
3005 4356 6.385843 TGTCATTGCAATGTTTTATAAGCGT 58.614 32.000 32.67 0.00 37.65 5.07
3006 4357 6.307558 TGTCATTGCAATGTTTTATAAGCGTG 59.692 34.615 32.67 9.59 37.65 5.34
3013 4364 6.353582 GCAATGTTTTATAAGCGTGTATCGAC 59.646 38.462 0.00 0.00 42.86 4.20
3029 4380 3.622166 TCGACTCCATCCTTTTTACCC 57.378 47.619 0.00 0.00 0.00 3.69
3033 4384 5.427481 TCGACTCCATCCTTTTTACCCTTAT 59.573 40.000 0.00 0.00 0.00 1.73
3034 4385 6.069847 TCGACTCCATCCTTTTTACCCTTATT 60.070 38.462 0.00 0.00 0.00 1.40
3037 4388 9.642343 GACTCCATCCTTTTTACCCTTATTAAT 57.358 33.333 0.00 0.00 0.00 1.40
3051 4405 8.747538 ACCCTTATTAATAACTTGATCCACAC 57.252 34.615 3.71 0.00 0.00 3.82
3053 4407 7.777910 CCCTTATTAATAACTTGATCCACACCA 59.222 37.037 3.71 0.00 0.00 4.17
3054 4408 8.621286 CCTTATTAATAACTTGATCCACACCAC 58.379 37.037 3.71 0.00 0.00 4.16
3083 4462 1.273781 TGATCCAGACCAGGGATGTCA 60.274 52.381 0.00 0.00 45.05 3.58
3084 4463 2.053244 GATCCAGACCAGGGATGTCAT 58.947 52.381 0.00 0.00 45.05 3.06
3121 4501 3.428045 GCAAGTTAATTCGCTCAGCCAAT 60.428 43.478 0.00 0.00 0.00 3.16
3139 4519 6.980397 CAGCCAATGAGAGTTTAAAACAAGTT 59.020 34.615 0.00 0.00 0.00 2.66
3140 4520 8.134895 CAGCCAATGAGAGTTTAAAACAAGTTA 58.865 33.333 0.00 0.00 0.00 2.24
3141 4521 8.860088 AGCCAATGAGAGTTTAAAACAAGTTAT 58.140 29.630 0.00 0.00 0.00 1.89
3182 6390 6.266103 AGAATGATGTCCACACAACTTTTCAT 59.734 34.615 0.00 0.00 35.64 2.57
3183 6391 5.185668 TGATGTCCACACAACTTTTCATG 57.814 39.130 0.00 0.00 35.64 3.07
3229 6438 5.968528 ATATGTTACAAAGGGCAAAACGA 57.031 34.783 0.00 0.00 0.00 3.85
3230 6439 4.657436 ATGTTACAAAGGGCAAAACGAA 57.343 36.364 0.00 0.00 0.00 3.85
3231 6440 4.035278 TGTTACAAAGGGCAAAACGAAG 57.965 40.909 0.00 0.00 0.00 3.79
3235 6444 4.195225 ACAAAGGGCAAAACGAAGAAAA 57.805 36.364 0.00 0.00 0.00 2.29
3236 6445 4.570930 ACAAAGGGCAAAACGAAGAAAAA 58.429 34.783 0.00 0.00 0.00 1.94
3279 6488 1.096386 GCAAGCAGATGAGCTGGGAG 61.096 60.000 0.00 0.00 45.89 4.30
3281 6490 2.203181 GCAGATGAGCTGGGAGCC 60.203 66.667 0.00 0.00 43.77 4.70
3283 6492 1.406065 GCAGATGAGCTGGGAGCCTA 61.406 60.000 0.00 0.00 43.77 3.93
3284 6493 1.126488 CAGATGAGCTGGGAGCCTAA 58.874 55.000 0.00 0.00 43.77 2.69
3302 6511 4.991687 GCCTAAAATACAGGAGATTCCTCG 59.008 45.833 0.00 0.00 45.66 4.63
3330 6539 4.344679 TGGTTTGGATTTGCAAGAGAACAT 59.655 37.500 0.00 0.00 0.00 2.71
3364 6573 5.590530 AAAGGCAACAACACATAAAGACA 57.409 34.783 0.00 0.00 41.41 3.41
3376 6585 6.701340 ACACATAAAGACAGAACTAGATGCA 58.299 36.000 0.00 0.00 0.00 3.96
3378 6587 5.814705 ACATAAAGACAGAACTAGATGCAGC 59.185 40.000 0.00 0.00 0.00 5.25
3470 6679 2.481276 CGATGGACGTATTCTCTTGCCA 60.481 50.000 0.00 0.00 37.22 4.92
3515 6724 0.250727 TCTTTGGTTTCCCTCTGCCG 60.251 55.000 0.00 0.00 0.00 5.69
3551 6763 6.128172 CGAGATATCAGAAAAACAGGCAAACT 60.128 38.462 5.32 0.00 0.00 2.66
3573 6792 2.979813 GCTTTTGTTAATCACTGCACGG 59.020 45.455 0.00 0.00 0.00 4.94
3586 6805 1.067821 CTGCACGGGCCAAAGTTTTTA 59.932 47.619 7.46 0.00 40.13 1.52
3587 6806 1.067821 TGCACGGGCCAAAGTTTTTAG 59.932 47.619 7.46 0.00 40.13 1.85
3632 6851 1.456296 CATTAGCTGGAGTGCTTGCA 58.544 50.000 0.00 0.00 43.74 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.927668 TCGCAATATGTGAGATATGAAAGATAA 57.072 29.630 0.00 0.00 31.05 1.75
47 48 6.694877 AGTAGTTAGACTCGCAATATGTGA 57.305 37.500 0.00 0.00 35.36 3.58
48 49 6.978024 GAGTAGTTAGACTCGCAATATGTG 57.022 41.667 0.00 0.00 36.76 3.21
58 59 8.705134 GCAAAAAGAAGAAGAGTAGTTAGACTC 58.295 37.037 0.00 0.00 45.30 3.36
59 60 7.382759 CGCAAAAAGAAGAAGAGTAGTTAGACT 59.617 37.037 0.00 0.00 0.00 3.24
60 61 7.359347 CCGCAAAAAGAAGAAGAGTAGTTAGAC 60.359 40.741 0.00 0.00 0.00 2.59
61 62 6.645415 CCGCAAAAAGAAGAAGAGTAGTTAGA 59.355 38.462 0.00 0.00 0.00 2.10
62 63 6.128526 CCCGCAAAAAGAAGAAGAGTAGTTAG 60.129 42.308 0.00 0.00 0.00 2.34
63 64 5.699458 CCCGCAAAAAGAAGAAGAGTAGTTA 59.301 40.000 0.00 0.00 0.00 2.24
64 65 4.515567 CCCGCAAAAAGAAGAAGAGTAGTT 59.484 41.667 0.00 0.00 0.00 2.24
65 66 4.065789 CCCGCAAAAAGAAGAAGAGTAGT 58.934 43.478 0.00 0.00 0.00 2.73
66 67 4.065789 ACCCGCAAAAAGAAGAAGAGTAG 58.934 43.478 0.00 0.00 0.00 2.57
67 68 3.813166 CACCCGCAAAAAGAAGAAGAGTA 59.187 43.478 0.00 0.00 0.00 2.59
68 69 2.618709 CACCCGCAAAAAGAAGAAGAGT 59.381 45.455 0.00 0.00 0.00 3.24
69 70 2.878406 TCACCCGCAAAAAGAAGAAGAG 59.122 45.455 0.00 0.00 0.00 2.85
70 71 2.925724 TCACCCGCAAAAAGAAGAAGA 58.074 42.857 0.00 0.00 0.00 2.87
71 72 3.066760 AGTTCACCCGCAAAAAGAAGAAG 59.933 43.478 0.00 0.00 0.00 2.85
72 73 3.020984 AGTTCACCCGCAAAAAGAAGAA 58.979 40.909 0.00 0.00 0.00 2.52
73 74 2.650322 AGTTCACCCGCAAAAAGAAGA 58.350 42.857 0.00 0.00 0.00 2.87
74 75 3.304458 GGTAGTTCACCCGCAAAAAGAAG 60.304 47.826 0.00 0.00 42.07 2.85
75 76 2.619646 GGTAGTTCACCCGCAAAAAGAA 59.380 45.455 0.00 0.00 42.07 2.52
76 77 2.223745 GGTAGTTCACCCGCAAAAAGA 58.776 47.619 0.00 0.00 42.07 2.52
77 78 1.069500 CGGTAGTTCACCCGCAAAAAG 60.069 52.381 0.00 0.00 45.52 2.27
78 79 0.945813 CGGTAGTTCACCCGCAAAAA 59.054 50.000 0.00 0.00 45.52 1.94
79 80 2.619362 CGGTAGTTCACCCGCAAAA 58.381 52.632 0.00 0.00 45.52 2.44
80 81 4.364817 CGGTAGTTCACCCGCAAA 57.635 55.556 0.00 0.00 45.52 3.68
87 88 7.972277 TTCATATAGTGAAGAACGGTAGTTCAC 59.028 37.037 20.07 20.07 46.37 3.18
88 89 7.972277 GTTCATATAGTGAAGAACGGTAGTTCA 59.028 37.037 12.98 1.95 46.99 3.18
89 90 7.972277 TGTTCATATAGTGAAGAACGGTAGTTC 59.028 37.037 3.42 3.42 46.99 3.01
90 91 7.833786 TGTTCATATAGTGAAGAACGGTAGTT 58.166 34.615 0.00 0.00 46.99 2.24
91 92 7.400599 TGTTCATATAGTGAAGAACGGTAGT 57.599 36.000 0.00 0.00 46.99 2.73
92 93 8.755941 CAATGTTCATATAGTGAAGAACGGTAG 58.244 37.037 0.00 0.00 46.99 3.18
93 94 8.471609 TCAATGTTCATATAGTGAAGAACGGTA 58.528 33.333 0.00 0.00 46.99 4.02
94 95 7.327975 TCAATGTTCATATAGTGAAGAACGGT 58.672 34.615 0.00 0.00 46.99 4.83
95 96 7.770801 TCAATGTTCATATAGTGAAGAACGG 57.229 36.000 0.00 0.00 46.99 4.44
96 97 9.855361 GAATCAATGTTCATATAGTGAAGAACG 57.145 33.333 0.00 0.00 46.99 3.95
124 125 9.638239 GTGTTGTGGAAATTCATAACAATGTAT 57.362 29.630 9.90 0.00 45.48 2.29
125 126 8.085296 GGTGTTGTGGAAATTCATAACAATGTA 58.915 33.333 9.90 0.00 45.48 2.29
126 127 6.928492 GGTGTTGTGGAAATTCATAACAATGT 59.072 34.615 9.90 0.00 45.48 2.71
127 128 6.368516 GGGTGTTGTGGAAATTCATAACAATG 59.631 38.462 9.90 0.00 45.48 2.82
128 129 6.463360 GGGTGTTGTGGAAATTCATAACAAT 58.537 36.000 9.90 0.00 45.48 2.71
129 130 5.221541 GGGGTGTTGTGGAAATTCATAACAA 60.222 40.000 9.90 5.57 45.48 2.83
130 131 4.282195 GGGGTGTTGTGGAAATTCATAACA 59.718 41.667 5.65 5.65 43.18 2.41
131 132 4.617298 CGGGGTGTTGTGGAAATTCATAAC 60.617 45.833 0.00 0.00 38.61 1.89
132 133 3.508012 CGGGGTGTTGTGGAAATTCATAA 59.492 43.478 0.00 0.00 0.00 1.90
133 134 3.085533 CGGGGTGTTGTGGAAATTCATA 58.914 45.455 0.00 0.00 0.00 2.15
134 135 1.892474 CGGGGTGTTGTGGAAATTCAT 59.108 47.619 0.00 0.00 0.00 2.57
135 136 1.323412 CGGGGTGTTGTGGAAATTCA 58.677 50.000 0.00 0.00 0.00 2.57
136 137 0.038618 GCGGGGTGTTGTGGAAATTC 60.039 55.000 0.00 0.00 0.00 2.17
137 138 1.801309 CGCGGGGTGTTGTGGAAATT 61.801 55.000 0.00 0.00 0.00 1.82
138 139 2.265182 CGCGGGGTGTTGTGGAAAT 61.265 57.895 0.00 0.00 0.00 2.17
139 140 2.902846 CGCGGGGTGTTGTGGAAA 60.903 61.111 0.00 0.00 0.00 3.13
140 141 4.939368 CCGCGGGGTGTTGTGGAA 62.939 66.667 20.10 0.00 38.00 3.53
151 152 0.974383 ACTAGATAATTCCCCGCGGG 59.026 55.000 37.99 37.99 46.11 6.13
152 153 2.413837 CAACTAGATAATTCCCCGCGG 58.586 52.381 21.04 21.04 0.00 6.46
153 154 2.036733 TCCAACTAGATAATTCCCCGCG 59.963 50.000 0.00 0.00 0.00 6.46
154 155 3.181458 TGTCCAACTAGATAATTCCCCGC 60.181 47.826 0.00 0.00 0.00 6.13
155 156 4.682778 TGTCCAACTAGATAATTCCCCG 57.317 45.455 0.00 0.00 0.00 5.73
156 157 6.659824 TCTTTGTCCAACTAGATAATTCCCC 58.340 40.000 0.00 0.00 0.00 4.81
157 158 7.496263 GTCTCTTTGTCCAACTAGATAATTCCC 59.504 40.741 0.00 0.00 0.00 3.97
158 159 7.222999 CGTCTCTTTGTCCAACTAGATAATTCC 59.777 40.741 0.00 0.00 0.00 3.01
159 160 7.222999 CCGTCTCTTTGTCCAACTAGATAATTC 59.777 40.741 0.00 0.00 0.00 2.17
160 161 7.042335 CCGTCTCTTTGTCCAACTAGATAATT 58.958 38.462 0.00 0.00 0.00 1.40
161 162 6.154706 ACCGTCTCTTTGTCCAACTAGATAAT 59.845 38.462 0.00 0.00 0.00 1.28
162 163 5.479375 ACCGTCTCTTTGTCCAACTAGATAA 59.521 40.000 0.00 0.00 0.00 1.75
163 164 5.014858 ACCGTCTCTTTGTCCAACTAGATA 58.985 41.667 0.00 0.00 0.00 1.98
164 165 3.833070 ACCGTCTCTTTGTCCAACTAGAT 59.167 43.478 0.00 0.00 0.00 1.98
165 166 3.228453 ACCGTCTCTTTGTCCAACTAGA 58.772 45.455 0.00 0.00 0.00 2.43
166 167 3.576648 GACCGTCTCTTTGTCCAACTAG 58.423 50.000 0.00 0.00 0.00 2.57
167 168 2.298163 GGACCGTCTCTTTGTCCAACTA 59.702 50.000 3.14 0.00 46.29 2.24
168 169 1.070289 GGACCGTCTCTTTGTCCAACT 59.930 52.381 3.14 0.00 46.29 3.16
169 170 1.509703 GGACCGTCTCTTTGTCCAAC 58.490 55.000 3.14 0.00 46.29 3.77
186 187 1.207089 CAGTTCTAGCCAATCACGGGA 59.793 52.381 0.00 0.00 0.00 5.14
197 198 1.141657 TGGATGGATGGCAGTTCTAGC 59.858 52.381 0.00 0.00 0.00 3.42
200 201 0.549950 CCTGGATGGATGGCAGTTCT 59.450 55.000 0.00 0.00 38.35 3.01
204 205 2.203451 GCCCTGGATGGATGGCAG 60.203 66.667 0.00 0.00 43.46 4.85
280 281 3.016817 TCCCCCATGGAATATGGATCA 57.983 47.619 15.22 0.00 41.40 2.92
291 292 1.377202 CACGTGAGTTCCCCCATGG 60.377 63.158 10.90 4.14 46.40 3.66
312 313 0.959372 CTCCCAGCAGTGCTTTCCTG 60.959 60.000 16.89 4.41 36.40 3.86
338 339 1.222936 CCAGGGGACACAGATCTGC 59.777 63.158 22.83 6.46 0.00 4.26
340 341 1.081833 AGCCAGGGGACACAGATCT 59.918 57.895 0.00 0.00 0.00 2.75
350 351 2.302587 TTAAAAAGACCAGCCAGGGG 57.697 50.000 0.00 0.00 43.89 4.79
360 361 2.351060 CCGGGCGGTCTTTTAAAAAGAC 60.351 50.000 3.45 3.45 44.38 3.01
383 384 3.430565 TAGATGTGGCAGCTCGCGG 62.431 63.158 6.13 0.00 43.84 6.46
393 394 0.585357 GCTCAATGCGCTAGATGTGG 59.415 55.000 9.73 2.13 0.00 4.17
405 406 2.125552 TCGCTCCACCGCTCAATG 60.126 61.111 0.00 0.00 0.00 2.82
406 407 2.125512 GTCGCTCCACCGCTCAAT 60.126 61.111 0.00 0.00 0.00 2.57
432 433 2.613691 GCAAAGACCTCCATTGCAATG 58.386 47.619 28.91 28.91 46.57 2.82
442 443 5.277011 GCAAAAACAAATCTGCAAAGACCTC 60.277 40.000 0.00 0.00 34.87 3.85
443 444 4.571984 GCAAAAACAAATCTGCAAAGACCT 59.428 37.500 0.00 0.00 34.87 3.85
444 445 4.332268 TGCAAAAACAAATCTGCAAAGACC 59.668 37.500 0.00 0.00 41.61 3.85
445 446 5.467902 TGCAAAAACAAATCTGCAAAGAC 57.532 34.783 0.00 0.00 41.61 3.01
455 456 6.981559 ACGGTACTTATGTTGCAAAAACAAAT 59.018 30.769 0.00 0.00 33.42 2.32
459 460 6.192782 CAACGGTACTTATGTTGCAAAAAC 57.807 37.500 0.00 0.00 36.87 2.43
477 478 6.238416 TTTGTTGTAAAGAAATCCGCAACGG 61.238 40.000 0.00 0.00 40.28 4.44
478 479 3.879427 TGTTGTAAAGAAATCCGCAACG 58.121 40.909 0.00 0.00 39.02 4.10
484 485 7.489160 ACAAGACCTTTGTTGTAAAGAAATCC 58.511 34.615 0.00 0.00 38.47 3.01
567 568 3.618019 GCAATGGTTCCTGCAACATGATT 60.618 43.478 0.00 0.00 38.48 2.57
577 578 3.814268 CCGCCGCAATGGTTCCTG 61.814 66.667 0.00 0.00 41.21 3.86
584 585 4.012895 GATACCGCCGCCGCAATG 62.013 66.667 0.00 0.00 34.03 2.82
596 597 0.527817 CTCAGTCGCAACCGGATACC 60.528 60.000 9.46 0.00 34.56 2.73
597 598 1.146358 GCTCAGTCGCAACCGGATAC 61.146 60.000 9.46 0.00 34.56 2.24
598 599 1.141019 GCTCAGTCGCAACCGGATA 59.859 57.895 9.46 0.00 34.56 2.59
599 600 2.125512 GCTCAGTCGCAACCGGAT 60.126 61.111 9.46 0.00 34.56 4.18
600 601 2.867855 AAGCTCAGTCGCAACCGGA 61.868 57.895 9.46 0.00 34.56 5.14
601 602 2.357517 AAGCTCAGTCGCAACCGG 60.358 61.111 0.00 0.00 34.56 5.28
610 611 1.551908 CCTGGAGGAGCAAGCTCAGT 61.552 60.000 22.19 9.81 44.40 3.41
611 612 1.221293 CCTGGAGGAGCAAGCTCAG 59.779 63.158 22.19 11.94 44.40 3.35
634 662 3.923864 AGCTGTTCCACGTCGCCA 61.924 61.111 0.00 0.00 0.00 5.69
638 666 2.607892 GCACCAGCTGTTCCACGTC 61.608 63.158 13.81 0.00 37.91 4.34
647 675 2.433838 CCAGAGTCGCACCAGCTG 60.434 66.667 6.78 6.78 39.10 4.24
681 709 3.005539 ACTGCATCACCCGCCTCT 61.006 61.111 0.00 0.00 0.00 3.69
700 729 3.003173 AGGTGCTAGAAGCCGCCA 61.003 61.111 0.00 0.00 41.51 5.69
725 754 3.390521 CCGGAGTGCTAGGTGCCA 61.391 66.667 0.00 0.00 42.00 4.92
731 760 4.514577 CGGCCACCGGAGTGCTAG 62.515 72.222 9.46 2.56 44.15 3.42
743 772 2.043852 GAGGAGAGGAGACGGCCA 60.044 66.667 2.24 0.00 0.00 5.36
749 778 0.466555 GCGGCTAAGAGGAGAGGAGA 60.467 60.000 0.00 0.00 0.00 3.71
758 787 0.992802 GTTCTTCACGCGGCTAAGAG 59.007 55.000 12.47 0.00 31.30 2.85
759 788 0.731514 CGTTCTTCACGCGGCTAAGA 60.732 55.000 12.47 13.29 43.37 2.10
760 789 1.702299 CGTTCTTCACGCGGCTAAG 59.298 57.895 12.47 10.99 43.37 2.18
761 790 3.850923 CGTTCTTCACGCGGCTAA 58.149 55.556 12.47 0.00 43.37 3.09
769 798 7.653767 TTCCTTTTCTTATCTCGTTCTTCAC 57.346 36.000 0.00 0.00 0.00 3.18
770 799 8.148351 TCTTTCCTTTTCTTATCTCGTTCTTCA 58.852 33.333 0.00 0.00 0.00 3.02
771 800 8.535690 TCTTTCCTTTTCTTATCTCGTTCTTC 57.464 34.615 0.00 0.00 0.00 2.87
772 801 8.368668 TCTCTTTCCTTTTCTTATCTCGTTCTT 58.631 33.333 0.00 0.00 0.00 2.52
773 802 7.815549 GTCTCTTTCCTTTTCTTATCTCGTTCT 59.184 37.037 0.00 0.00 0.00 3.01
774 803 7.201367 CGTCTCTTTCCTTTTCTTATCTCGTTC 60.201 40.741 0.00 0.00 0.00 3.95
775 804 6.586844 CGTCTCTTTCCTTTTCTTATCTCGTT 59.413 38.462 0.00 0.00 0.00 3.85
776 805 6.072064 TCGTCTCTTTCCTTTTCTTATCTCGT 60.072 38.462 0.00 0.00 0.00 4.18
777 806 6.251801 GTCGTCTCTTTCCTTTTCTTATCTCG 59.748 42.308 0.00 0.00 0.00 4.04
778 807 6.251801 CGTCGTCTCTTTCCTTTTCTTATCTC 59.748 42.308 0.00 0.00 0.00 2.75
779 808 6.094061 CGTCGTCTCTTTCCTTTTCTTATCT 58.906 40.000 0.00 0.00 0.00 1.98
780 809 5.288952 CCGTCGTCTCTTTCCTTTTCTTATC 59.711 44.000 0.00 0.00 0.00 1.75
781 810 5.169295 CCGTCGTCTCTTTCCTTTTCTTAT 58.831 41.667 0.00 0.00 0.00 1.73
782 811 4.553323 CCGTCGTCTCTTTCCTTTTCTTA 58.447 43.478 0.00 0.00 0.00 2.10
783 812 3.391049 CCGTCGTCTCTTTCCTTTTCTT 58.609 45.455 0.00 0.00 0.00 2.52
784 813 2.288886 CCCGTCGTCTCTTTCCTTTTCT 60.289 50.000 0.00 0.00 0.00 2.52
785 814 2.067013 CCCGTCGTCTCTTTCCTTTTC 58.933 52.381 0.00 0.00 0.00 2.29
786 815 1.270678 CCCCGTCGTCTCTTTCCTTTT 60.271 52.381 0.00 0.00 0.00 2.27
787 816 0.320697 CCCCGTCGTCTCTTTCCTTT 59.679 55.000 0.00 0.00 0.00 3.11
788 817 0.541296 TCCCCGTCGTCTCTTTCCTT 60.541 55.000 0.00 0.00 0.00 3.36
789 818 0.541296 TTCCCCGTCGTCTCTTTCCT 60.541 55.000 0.00 0.00 0.00 3.36
790 819 0.108756 CTTCCCCGTCGTCTCTTTCC 60.109 60.000 0.00 0.00 0.00 3.13
791 820 0.886563 TCTTCCCCGTCGTCTCTTTC 59.113 55.000 0.00 0.00 0.00 2.62
792 821 1.272769 CTTCTTCCCCGTCGTCTCTTT 59.727 52.381 0.00 0.00 0.00 2.52
793 822 0.889306 CTTCTTCCCCGTCGTCTCTT 59.111 55.000 0.00 0.00 0.00 2.85
794 823 0.037877 TCTTCTTCCCCGTCGTCTCT 59.962 55.000 0.00 0.00 0.00 3.10
795 824 0.452585 CTCTTCTTCCCCGTCGTCTC 59.547 60.000 0.00 0.00 0.00 3.36
796 825 0.966370 CCTCTTCTTCCCCGTCGTCT 60.966 60.000 0.00 0.00 0.00 4.18
797 826 0.964358 TCCTCTTCTTCCCCGTCGTC 60.964 60.000 0.00 0.00 0.00 4.20
798 827 0.966370 CTCCTCTTCTTCCCCGTCGT 60.966 60.000 0.00 0.00 0.00 4.34
799 828 0.966370 ACTCCTCTTCTTCCCCGTCG 60.966 60.000 0.00 0.00 0.00 5.12
800 829 0.533032 CACTCCTCTTCTTCCCCGTC 59.467 60.000 0.00 0.00 0.00 4.79
801 830 0.905337 CCACTCCTCTTCTTCCCCGT 60.905 60.000 0.00 0.00 0.00 5.28
802 831 0.614979 TCCACTCCTCTTCTTCCCCG 60.615 60.000 0.00 0.00 0.00 5.73
803 832 1.199615 CTCCACTCCTCTTCTTCCCC 58.800 60.000 0.00 0.00 0.00 4.81
804 833 1.199615 CCTCCACTCCTCTTCTTCCC 58.800 60.000 0.00 0.00 0.00 3.97
805 834 2.107366 CTCCTCCACTCCTCTTCTTCC 58.893 57.143 0.00 0.00 0.00 3.46
806 835 2.107366 CCTCCTCCACTCCTCTTCTTC 58.893 57.143 0.00 0.00 0.00 2.87
807 836 1.273552 CCCTCCTCCACTCCTCTTCTT 60.274 57.143 0.00 0.00 0.00 2.52
808 837 0.338120 CCCTCCTCCACTCCTCTTCT 59.662 60.000 0.00 0.00 0.00 2.85
809 838 0.336737 TCCCTCCTCCACTCCTCTTC 59.663 60.000 0.00 0.00 0.00 2.87
810 839 0.041982 GTCCCTCCTCCACTCCTCTT 59.958 60.000 0.00 0.00 0.00 2.85
811 840 1.149782 TGTCCCTCCTCCACTCCTCT 61.150 60.000 0.00 0.00 0.00 3.69
812 841 0.031616 ATGTCCCTCCTCCACTCCTC 60.032 60.000 0.00 0.00 0.00 3.71
813 842 0.031616 GATGTCCCTCCTCCACTCCT 60.032 60.000 0.00 0.00 0.00 3.69
814 843 1.395826 CGATGTCCCTCCTCCACTCC 61.396 65.000 0.00 0.00 0.00 3.85
815 844 1.395826 CCGATGTCCCTCCTCCACTC 61.396 65.000 0.00 0.00 0.00 3.51
816 845 1.381872 CCGATGTCCCTCCTCCACT 60.382 63.158 0.00 0.00 0.00 4.00
817 846 0.396695 TACCGATGTCCCTCCTCCAC 60.397 60.000 0.00 0.00 0.00 4.02
818 847 0.337082 TTACCGATGTCCCTCCTCCA 59.663 55.000 0.00 0.00 0.00 3.86
819 848 1.492764 TTTACCGATGTCCCTCCTCC 58.507 55.000 0.00 0.00 0.00 4.30
820 849 3.197116 TCTTTTTACCGATGTCCCTCCTC 59.803 47.826 0.00 0.00 0.00 3.71
821 850 3.178865 TCTTTTTACCGATGTCCCTCCT 58.821 45.455 0.00 0.00 0.00 3.69
822 851 3.197116 TCTCTTTTTACCGATGTCCCTCC 59.803 47.826 0.00 0.00 0.00 4.30
823 852 4.182339 GTCTCTTTTTACCGATGTCCCTC 58.818 47.826 0.00 0.00 0.00 4.30
824 853 3.581332 TGTCTCTTTTTACCGATGTCCCT 59.419 43.478 0.00 0.00 0.00 4.20
825 854 3.934068 TGTCTCTTTTTACCGATGTCCC 58.066 45.455 0.00 0.00 0.00 4.46
826 855 4.392138 CCTTGTCTCTTTTTACCGATGTCC 59.608 45.833 0.00 0.00 0.00 4.02
827 856 4.142881 GCCTTGTCTCTTTTTACCGATGTC 60.143 45.833 0.00 0.00 0.00 3.06
828 857 3.751698 GCCTTGTCTCTTTTTACCGATGT 59.248 43.478 0.00 0.00 0.00 3.06
829 858 4.003648 AGCCTTGTCTCTTTTTACCGATG 58.996 43.478 0.00 0.00 0.00 3.84
830 859 4.003648 CAGCCTTGTCTCTTTTTACCGAT 58.996 43.478 0.00 0.00 0.00 4.18
831 860 3.399330 CAGCCTTGTCTCTTTTTACCGA 58.601 45.455 0.00 0.00 0.00 4.69
832 861 2.484264 CCAGCCTTGTCTCTTTTTACCG 59.516 50.000 0.00 0.00 0.00 4.02
833 862 3.751518 TCCAGCCTTGTCTCTTTTTACC 58.248 45.455 0.00 0.00 0.00 2.85
834 863 4.642429 TCTCCAGCCTTGTCTCTTTTTAC 58.358 43.478 0.00 0.00 0.00 2.01
835 864 4.263068 CCTCTCCAGCCTTGTCTCTTTTTA 60.263 45.833 0.00 0.00 0.00 1.52
836 865 3.497584 CCTCTCCAGCCTTGTCTCTTTTT 60.498 47.826 0.00 0.00 0.00 1.94
837 866 2.039613 CCTCTCCAGCCTTGTCTCTTTT 59.960 50.000 0.00 0.00 0.00 2.27
838 867 1.627834 CCTCTCCAGCCTTGTCTCTTT 59.372 52.381 0.00 0.00 0.00 2.52
839 868 1.203237 TCCTCTCCAGCCTTGTCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
840 869 0.411452 TCCTCTCCAGCCTTGTCTCT 59.589 55.000 0.00 0.00 0.00 3.10
841 870 0.823460 CTCCTCTCCAGCCTTGTCTC 59.177 60.000 0.00 0.00 0.00 3.36
842 871 1.264045 GCTCCTCTCCAGCCTTGTCT 61.264 60.000 0.00 0.00 0.00 3.41
843 872 1.220477 GCTCCTCTCCAGCCTTGTC 59.780 63.158 0.00 0.00 0.00 3.18
844 873 1.229464 AGCTCCTCTCCAGCCTTGT 60.229 57.895 0.00 0.00 37.63 3.16
845 874 0.977108 AGAGCTCCTCTCCAGCCTTG 60.977 60.000 10.93 0.00 42.90 3.61
846 875 0.977108 CAGAGCTCCTCTCCAGCCTT 60.977 60.000 10.93 0.00 42.90 4.35
847 876 1.381599 CAGAGCTCCTCTCCAGCCT 60.382 63.158 10.93 0.00 42.90 4.58
848 877 2.433994 CCAGAGCTCCTCTCCAGCC 61.434 68.421 10.93 0.00 42.90 4.85
849 878 2.433994 CCCAGAGCTCCTCTCCAGC 61.434 68.421 10.93 0.00 42.90 4.85
850 879 2.433994 GCCCAGAGCTCCTCTCCAG 61.434 68.421 10.93 0.00 42.90 3.86
851 880 2.364842 GCCCAGAGCTCCTCTCCA 60.365 66.667 10.93 0.00 42.90 3.86
852 881 3.535962 CGCCCAGAGCTCCTCTCC 61.536 72.222 10.93 0.00 42.90 3.71
853 882 3.535962 CCGCCCAGAGCTCCTCTC 61.536 72.222 10.93 0.00 38.99 3.20
889 918 4.011517 TTTCGTCCACCGCCTCCC 62.012 66.667 0.00 0.00 36.19 4.30
973 1002 1.664873 GTTTTAGGGTCGGCTCATCC 58.335 55.000 0.00 0.00 0.00 3.51
1012 1041 3.078836 TGGGGACGACGGGATTCC 61.079 66.667 0.00 0.00 0.00 3.01
1013 1042 1.400530 ATCTGGGGACGACGGGATTC 61.401 60.000 0.00 0.00 0.00 2.52
1021 1050 0.837272 GATTTGGGATCTGGGGACGA 59.163 55.000 0.00 0.00 0.00 4.20
1083 1112 2.125269 CATGGGGTCCGGTTCGAC 60.125 66.667 0.00 0.00 0.00 4.20
1259 1291 1.748122 GTACGAGAGGACTGGCGGA 60.748 63.158 0.00 0.00 43.35 5.54
1311 1343 2.687566 CGCCAGGGGTAGGGACTT 60.688 66.667 0.00 0.00 41.75 3.01
1401 1433 2.155155 CGAAGTAGTCGCAAAACCTGAC 59.845 50.000 0.00 0.00 44.14 3.51
1489 1521 2.292267 CCATCTCCCGGTCTTGAAATG 58.708 52.381 0.00 0.00 0.00 2.32
1501 1533 0.036022 GCTCAGTATGGCCATCTCCC 59.964 60.000 24.80 9.01 36.16 4.30
1556 1600 1.228154 GGTGAACTTGCCGAGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
1583 1627 1.982395 CCCAGAGCGGTACAGGTGA 60.982 63.158 1.45 0.00 0.00 4.02
1628 1672 0.602905 CCACCTCAACGACCTTGGAC 60.603 60.000 0.00 0.00 0.00 4.02
1637 1681 2.266055 GGCTCCTCCACCTCAACG 59.734 66.667 0.00 0.00 34.01 4.10
1640 1684 4.704103 AGCGGCTCCTCCACCTCA 62.704 66.667 0.00 0.00 34.01 3.86
1754 1798 3.432051 GAGATCCACCCAGCCGACG 62.432 68.421 0.00 0.00 0.00 5.12
1892 1945 3.666253 TTGACGACGAGGCTGCGA 61.666 61.111 0.00 0.00 34.83 5.10
1899 1952 0.318699 TTGCTCTGGTTGACGACGAG 60.319 55.000 0.00 0.00 35.61 4.18
1937 1990 2.301583 GGCTTGGTAGATCTCCATCTCC 59.698 54.545 12.78 10.69 40.18 3.71
1970 2023 0.603975 GATATGCCTTGTCCTCGGGC 60.604 60.000 0.00 0.00 45.45 6.13
2092 2145 4.853050 AGCATCGAGGCTGCCAGC 62.853 66.667 25.65 8.55 43.89 4.85
2213 2271 2.112815 GGTGGGGTAAGACATGCGC 61.113 63.158 0.00 0.00 0.00 6.09
2246 2304 5.772825 TGTAGACGACATCATCATCATCA 57.227 39.130 0.00 0.00 31.20 3.07
2276 2334 1.122019 ACATATCGGTGCCCTCCCTC 61.122 60.000 0.00 0.00 0.00 4.30
2336 2394 0.036732 CTGGTAGCTTGGCAACTCCA 59.963 55.000 0.00 7.95 44.85 3.86
2373 2431 0.238289 GTAGCAAAGAAGCAGCGCAA 59.762 50.000 11.47 0.00 36.85 4.85
2377 2435 1.648467 CCCGGTAGCAAAGAAGCAGC 61.648 60.000 0.00 0.00 36.85 5.25
2385 2443 1.281419 TTGGAGATCCCGGTAGCAAA 58.719 50.000 0.00 0.00 37.93 3.68
2414 2472 3.579709 CTCACTTGTACTGCCAGTAGTG 58.420 50.000 16.65 16.65 34.98 2.74
2435 2493 2.323968 GAGTCTGCTCAAGGGATTCC 57.676 55.000 0.00 0.00 41.29 3.01
2486 2544 3.924686 CCTTCAATCAAGCAAACTCATGC 59.075 43.478 0.00 0.00 46.78 4.06
2500 2565 7.244192 GTCTAACTGCATAAACACCTTCAATC 58.756 38.462 0.00 0.00 0.00 2.67
2504 2569 4.092968 CGGTCTAACTGCATAAACACCTTC 59.907 45.833 0.00 0.00 0.00 3.46
2517 2589 0.603569 ACAGGTCAGCGGTCTAACTG 59.396 55.000 9.41 9.41 35.15 3.16
2522 2594 2.737180 CACACAGGTCAGCGGTCT 59.263 61.111 0.00 0.00 0.00 3.85
2526 2598 2.941333 CTTGCACACAGGTCAGCG 59.059 61.111 0.00 0.00 0.00 5.18
2546 2618 3.412624 GACCCTCTGCATCCAGCCC 62.413 68.421 0.00 0.00 44.83 5.19
2564 2636 8.299570 GGCAGAACATAAATATATTCAGGGTTG 58.700 37.037 0.00 0.00 0.00 3.77
2567 2639 6.947733 TGGGCAGAACATAAATATATTCAGGG 59.052 38.462 0.00 0.00 0.00 4.45
2574 2659 7.750655 TGGTACATGGGCAGAACATAAATATA 58.249 34.615 0.00 0.00 0.00 0.86
2602 2687 8.984482 CTCATAATCTGAGCAAATTAAAGACG 57.016 34.615 0.00 0.00 44.73 4.18
2629 3336 9.646427 TGTAAAACAAAGACAAGCTAAAAACAT 57.354 25.926 0.00 0.00 0.00 2.71
2652 3359 9.770097 TGCCAATTTTGTTTTATTTCATCTGTA 57.230 25.926 0.00 0.00 0.00 2.74
2657 3364 8.238631 GCTCATGCCAATTTTGTTTTATTTCAT 58.761 29.630 0.00 0.00 0.00 2.57
2677 3384 0.323178 AAAGGGAGTGCAGGCTCATG 60.323 55.000 6.66 0.00 37.24 3.07
2692 3399 4.498241 GGATTAAAGGCTTGCAGAAAAGG 58.502 43.478 0.00 0.00 0.00 3.11
2693 3400 4.021192 TGGGATTAAAGGCTTGCAGAAAAG 60.021 41.667 0.00 0.00 0.00 2.27
2720 3427 1.683917 CGATTAGGCAGTCCAGCTAGT 59.316 52.381 0.00 0.00 33.74 2.57
2735 3442 2.437085 TCCAGACCAGAGAGCGATTA 57.563 50.000 0.00 0.00 0.00 1.75
2736 3443 1.786937 ATCCAGACCAGAGAGCGATT 58.213 50.000 0.00 0.00 0.00 3.34
2738 3445 2.025155 GTTATCCAGACCAGAGAGCGA 58.975 52.381 0.00 0.00 0.00 4.93
2739 3446 1.751351 TGTTATCCAGACCAGAGAGCG 59.249 52.381 0.00 0.00 0.00 5.03
2740 3447 2.763448 AGTGTTATCCAGACCAGAGAGC 59.237 50.000 0.00 0.00 0.00 4.09
2741 3448 3.383185 GGAGTGTTATCCAGACCAGAGAG 59.617 52.174 0.00 0.00 39.34 3.20
2743 3450 2.099921 CGGAGTGTTATCCAGACCAGAG 59.900 54.545 0.00 0.00 39.53 3.35
2744 3451 2.100197 CGGAGTGTTATCCAGACCAGA 58.900 52.381 0.00 0.00 39.53 3.86
2745 3452 1.825474 ACGGAGTGTTATCCAGACCAG 59.175 52.381 0.00 0.00 42.51 4.00
2746 3453 1.933021 ACGGAGTGTTATCCAGACCA 58.067 50.000 0.00 0.00 42.51 4.02
2747 3454 2.232941 TCAACGGAGTGTTATCCAGACC 59.767 50.000 0.00 0.00 45.00 3.85
2750 3457 2.609459 GCATCAACGGAGTGTTATCCAG 59.391 50.000 0.00 0.00 45.00 3.86
2772 3479 1.975680 GTGACCCTGGAACTAAGTCCA 59.024 52.381 0.00 0.00 45.72 4.02
2773 3480 1.278413 GGTGACCCTGGAACTAAGTCC 59.722 57.143 0.00 0.00 38.27 3.85
2774 3481 2.764439 GGTGACCCTGGAACTAAGTC 57.236 55.000 0.00 0.00 0.00 3.01
2819 3562 9.063739 CAAATTGTTTCATTGTGTTTTTGAAGG 57.936 29.630 0.00 0.00 31.54 3.46
2820 3563 9.609950 ACAAATTGTTTCATTGTGTTTTTGAAG 57.390 25.926 0.00 0.00 36.03 3.02
2833 3576 6.176183 TGGTGTTTTGGACAAATTGTTTCAT 58.824 32.000 0.00 0.00 40.65 2.57
2834 3577 5.551233 TGGTGTTTTGGACAAATTGTTTCA 58.449 33.333 0.00 0.00 40.65 2.69
2835 3578 6.676237 ATGGTGTTTTGGACAAATTGTTTC 57.324 33.333 0.00 0.00 40.65 2.78
2838 3581 6.656693 TCAAAATGGTGTTTTGGACAAATTGT 59.343 30.769 0.00 0.00 40.65 2.71
2839 3582 7.081526 TCAAAATGGTGTTTTGGACAAATTG 57.918 32.000 11.87 0.00 40.65 2.32
2841 3584 7.082700 GTTCAAAATGGTGTTTTGGACAAAT 57.917 32.000 16.01 0.00 43.76 2.32
2845 3588 4.932200 TGTGTTCAAAATGGTGTTTTGGAC 59.068 37.500 14.66 14.66 44.28 4.02
2846 3589 5.152623 TGTGTTCAAAATGGTGTTTTGGA 57.847 34.783 11.87 2.41 39.25 3.53
2847 3590 5.869753 TTGTGTTCAAAATGGTGTTTTGG 57.130 34.783 11.87 0.00 39.25 3.28
2848 3591 7.524912 TGAATTGTGTTCAAAATGGTGTTTTG 58.475 30.769 6.86 6.86 39.90 2.44
2853 3596 6.366877 GGATCTGAATTGTGTTCAAAATGGTG 59.633 38.462 0.00 0.00 37.11 4.17
2854 3597 6.458210 GGATCTGAATTGTGTTCAAAATGGT 58.542 36.000 0.00 0.00 37.11 3.55
2861 3604 4.468713 TGTTGGGATCTGAATTGTGTTCA 58.531 39.130 0.00 0.00 0.00 3.18
2899 3642 7.476667 TGACGATTGTGTTTGAACTATTTTGT 58.523 30.769 0.00 0.00 0.00 2.83
2901 3644 7.971168 TGTTGACGATTGTGTTTGAACTATTTT 59.029 29.630 0.00 0.00 0.00 1.82
2902 3645 7.431084 GTGTTGACGATTGTGTTTGAACTATTT 59.569 33.333 0.00 0.00 0.00 1.40
2914 3819 3.299162 CATGGTTGTGTTGACGATTGTG 58.701 45.455 0.00 0.00 0.00 3.33
2927 4253 2.985282 CCGTGGCAGCATGGTTGT 60.985 61.111 0.00 0.00 35.86 3.32
2938 4264 3.520569 ACATATTTTCAATTGCCGTGGC 58.479 40.909 3.30 3.30 42.35 5.01
2939 4265 4.732923 CGTACATATTTTCAATTGCCGTGG 59.267 41.667 0.00 0.00 0.00 4.94
2943 4269 8.635986 CGTATACGTACATATTTTCAATTGCC 57.364 34.615 17.16 0.00 34.11 4.52
2961 4287 5.403166 TGACAGGTTTTCTTTGACGTATACG 59.597 40.000 23.24 23.24 46.33 3.06
2966 4292 4.733523 GCAATGACAGGTTTTCTTTGACGT 60.734 41.667 0.00 0.00 32.47 4.34
2968 4319 4.681744 TGCAATGACAGGTTTTCTTTGAC 58.318 39.130 0.00 0.00 32.47 3.18
2976 4327 9.206870 CTTATAAAACATTGCAATGACAGGTTT 57.793 29.630 38.99 28.16 39.67 3.27
2980 4331 6.527722 ACGCTTATAAAACATTGCAATGACAG 59.472 34.615 38.99 23.50 39.67 3.51
2984 4335 6.630676 ACACGCTTATAAAACATTGCAATG 57.369 33.333 32.74 32.74 42.10 2.82
2988 4339 6.353582 GTCGATACACGCTTATAAAACATTGC 59.646 38.462 0.00 0.00 42.26 3.56
2994 4345 5.893687 TGGAGTCGATACACGCTTATAAAA 58.106 37.500 0.00 0.00 42.26 1.52
3001 4352 0.669077 GGATGGAGTCGATACACGCT 59.331 55.000 0.00 0.00 42.26 5.07
3005 4356 5.395990 GGGTAAAAAGGATGGAGTCGATACA 60.396 44.000 0.00 0.00 0.00 2.29
3006 4357 5.055144 GGGTAAAAAGGATGGAGTCGATAC 58.945 45.833 0.00 0.00 0.00 2.24
3029 4380 9.173021 TGTGGTGTGGATCAAGTTATTAATAAG 57.827 33.333 8.18 0.00 0.00 1.73
3033 4384 7.825331 TTTGTGGTGTGGATCAAGTTATTAA 57.175 32.000 0.00 0.00 0.00 1.40
3034 4385 7.825331 TTTTGTGGTGTGGATCAAGTTATTA 57.175 32.000 0.00 0.00 0.00 0.98
3037 4388 5.888724 TCTTTTTGTGGTGTGGATCAAGTTA 59.111 36.000 0.00 0.00 0.00 2.24
3038 4389 4.709397 TCTTTTTGTGGTGTGGATCAAGTT 59.291 37.500 0.00 0.00 0.00 2.66
3039 4390 4.277476 TCTTTTTGTGGTGTGGATCAAGT 58.723 39.130 0.00 0.00 0.00 3.16
3041 4392 5.362143 TCATTCTTTTTGTGGTGTGGATCAA 59.638 36.000 0.00 0.00 0.00 2.57
3045 4399 4.280677 GGATCATTCTTTTTGTGGTGTGGA 59.719 41.667 0.00 0.00 0.00 4.02
3051 4405 4.523943 TGGTCTGGATCATTCTTTTTGTGG 59.476 41.667 0.00 0.00 0.00 4.17
3053 4407 4.768968 CCTGGTCTGGATCATTCTTTTTGT 59.231 41.667 0.00 0.00 0.00 2.83
3054 4408 4.159135 CCCTGGTCTGGATCATTCTTTTTG 59.841 45.833 0.00 0.00 0.00 2.44
3083 4462 1.488705 TTGCCCTGGTTCTCGGTGAT 61.489 55.000 0.00 0.00 0.00 3.06
3084 4463 2.111999 CTTGCCCTGGTTCTCGGTGA 62.112 60.000 0.00 0.00 0.00 4.02
3149 4529 5.008911 TGTGTGGACATCATTCTGTTTCTTG 59.991 40.000 0.00 0.00 0.00 3.02
3156 6364 5.443185 AAAGTTGTGTGGACATCATTCTG 57.557 39.130 0.00 0.00 30.13 3.02
3162 6370 5.009010 AGACATGAAAAGTTGTGTGGACATC 59.991 40.000 0.00 0.00 30.13 3.06
3182 6390 6.049955 AGGTAGCAGCAAGTTAATTAGACA 57.950 37.500 0.00 0.00 0.00 3.41
3183 6391 6.986904 AAGGTAGCAGCAAGTTAATTAGAC 57.013 37.500 0.00 0.00 0.00 2.59
3243 6452 3.777925 CTTGGGCGTGCGTCTTCG 61.778 66.667 0.00 0.00 40.37 3.79
3244 6453 4.090057 GCTTGGGCGTGCGTCTTC 62.090 66.667 0.00 0.00 0.00 2.87
3256 6465 0.452184 CAGCTCATCTGCTTGCTTGG 59.548 55.000 0.00 0.00 41.98 3.61
3302 6511 1.737735 GCAAATCCAAACCAGCGCC 60.738 57.895 2.29 0.00 0.00 6.53
3364 6573 3.244700 ACTTTGTGGCTGCATCTAGTTCT 60.245 43.478 0.50 0.00 0.00 3.01
3376 6585 3.897505 AGGCATCTTTTAACTTTGTGGCT 59.102 39.130 0.00 0.00 36.37 4.75
3378 6587 5.452078 TCAGGCATCTTTTAACTTTGTGG 57.548 39.130 0.00 0.00 0.00 4.17
3470 6679 1.456705 GCGTCCTGGAGGGAGAGAT 60.457 63.158 17.33 0.00 46.10 2.75
3551 6763 3.549827 CCGTGCAGTGATTAACAAAAGCA 60.550 43.478 0.00 0.00 32.38 3.91
3552 6764 2.979813 CCGTGCAGTGATTAACAAAAGC 59.020 45.455 0.00 0.00 0.00 3.51
3553 6765 3.564511 CCCGTGCAGTGATTAACAAAAG 58.435 45.455 0.00 0.00 0.00 2.27
3573 6792 2.610479 GCTCTGCCTAAAAACTTTGGCC 60.610 50.000 0.00 0.00 44.32 5.36
3591 6810 4.123506 GGCCAGTAAGTTTCAGATAGCTC 58.876 47.826 0.00 0.00 0.00 4.09
3632 6851 0.110486 ATGCAGGTCGTTCAAAGGGT 59.890 50.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.