Multiple sequence alignment - TraesCS6B01G300300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G300300 chr6B 100.000 4557 0 0 1 4557 538367563 538372119 0.000000e+00 8416.0
1 TraesCS6B01G300300 chr6B 100.000 3087 0 0 4881 7967 538372443 538375529 0.000000e+00 5701.0
2 TraesCS6B01G300300 chr6B 94.118 1530 87 3 4917 6446 613603795 613602269 0.000000e+00 2324.0
3 TraesCS6B01G300300 chr6B 98.020 101 2 0 2880 2980 538370297 538370397 8.220000e-40 176.0
4 TraesCS6B01G300300 chr6B 98.020 101 2 0 2735 2835 538370442 538370542 8.220000e-40 176.0
5 TraesCS6B01G300300 chr6B 95.556 45 2 0 2833 2877 538370338 538370382 1.110000e-08 73.1
6 TraesCS6B01G300300 chr6B 95.556 45 2 0 2776 2820 538370395 538370439 1.110000e-08 73.1
7 TraesCS6B01G300300 chr6B 96.774 31 1 0 1791 1821 703304287 703304317 1.400000e-02 52.8
8 TraesCS6B01G300300 chr5B 95.564 1578 62 4 4882 6452 102395774 102397350 0.000000e+00 2519.0
9 TraesCS6B01G300300 chr5B 95.663 830 34 2 3728 4557 102394597 102395424 0.000000e+00 1332.0
10 TraesCS6B01G300300 chr5B 93.584 826 32 3 3732 4557 511367323 511368127 0.000000e+00 1212.0
11 TraesCS6B01G300300 chr5B 92.353 170 13 0 7795 7964 504062410 504062579 7.990000e-60 243.0
12 TraesCS6B01G300300 chr1B 95.683 1529 64 2 4918 6446 288956461 288954935 0.000000e+00 2457.0
13 TraesCS6B01G300300 chr1B 93.705 826 52 0 3732 4557 260267460 260266635 0.000000e+00 1238.0
14 TraesCS6B01G300300 chr1B 94.424 807 34 1 3732 4538 288957934 288957139 0.000000e+00 1230.0
15 TraesCS6B01G300300 chr2B 93.509 1556 77 14 4884 6429 453234944 453233403 0.000000e+00 2292.0
16 TraesCS6B01G300300 chr2B 93.717 1528 94 2 4919 6446 470905512 470907037 0.000000e+00 2289.0
17 TraesCS6B01G300300 chr2B 92.219 1568 121 1 4882 6449 207206156 207207722 0.000000e+00 2218.0
18 TraesCS6B01G300300 chr2B 91.657 827 48 3 3731 4557 470904637 470905442 0.000000e+00 1125.0
19 TraesCS6B01G300300 chr2B 92.818 738 53 0 3726 4463 207205093 207205830 0.000000e+00 1070.0
20 TraesCS6B01G300300 chr2B 98.246 57 1 0 4501 4557 763060382 763060438 5.090000e-17 100.0
21 TraesCS6B01G300300 chr7B 93.398 1545 88 12 4895 6437 123432548 123434080 0.000000e+00 2276.0
22 TraesCS6B01G300300 chr7B 94.611 167 9 0 7798 7964 707683861 707684027 7.930000e-65 259.0
23 TraesCS6B01G300300 chr3B 94.604 1464 58 6 4881 6329 70592568 70594025 0.000000e+00 2246.0
24 TraesCS6B01G300300 chr3B 95.521 826 32 2 3732 4557 70591404 70592224 0.000000e+00 1315.0
25 TraesCS6B01G300300 chr3B 91.943 211 17 0 6236 6446 375715152 375715362 6.050000e-76 296.0
26 TraesCS6B01G300300 chr3B 89.474 209 22 0 6238 6446 51504510 51504302 1.700000e-66 265.0
27 TraesCS6B01G300300 chr3B 89.055 201 21 1 6236 6436 53958920 53958721 1.720000e-61 248.0
28 TraesCS6B01G300300 chr3B 100.000 30 0 0 4527 4556 729892783 729892754 1.000000e-03 56.5
29 TraesCS6B01G300300 chr4B 92.196 1589 103 10 4881 6450 111907291 111908877 0.000000e+00 2228.0
30 TraesCS6B01G300300 chr4B 94.559 827 44 1 3731 4557 11679677 11678852 0.000000e+00 1277.0
31 TraesCS6B01G300300 chr6A 90.963 1505 86 23 6474 7964 499404908 499406376 0.000000e+00 1980.0
32 TraesCS6B01G300300 chr6A 89.756 615 49 8 3128 3731 499404239 499404850 0.000000e+00 774.0
33 TraesCS6B01G300300 chr6A 89.319 543 30 16 724 1251 499401910 499402439 0.000000e+00 656.0
34 TraesCS6B01G300300 chr6A 89.114 395 32 4 2443 2835 499403134 499403519 1.550000e-131 481.0
35 TraesCS6B01G300300 chr6A 79.323 532 37 17 188 679 499401407 499401905 1.000000e-78 305.0
36 TraesCS6B01G300300 chr6A 91.429 210 14 1 1654 1859 499402577 499402786 1.310000e-72 285.0
37 TraesCS6B01G300300 chr6A 85.417 192 20 5 1 185 499401060 499401250 8.160000e-45 193.0
38 TraesCS6B01G300300 chr6A 88.820 161 13 4 2251 2407 499402906 499403065 8.160000e-45 193.0
39 TraesCS6B01G300300 chr6A 83.444 151 17 2 2985 3135 499403629 499403771 5.020000e-27 134.0
40 TraesCS6B01G300300 chr6D 85.780 1512 124 45 6474 7964 357010981 357012422 0.000000e+00 1517.0
41 TraesCS6B01G300300 chr6D 90.716 894 53 17 759 1632 357007639 357008522 0.000000e+00 1164.0
42 TraesCS6B01G300300 chr6D 90.850 612 28 7 2252 2835 357009529 357010140 0.000000e+00 795.0
43 TraesCS6B01G300300 chr6D 95.088 509 18 1 3234 3735 357010426 357010934 0.000000e+00 795.0
44 TraesCS6B01G300300 chr6D 94.595 407 21 1 1873 2278 357009122 357009528 5.250000e-176 628.0
45 TraesCS6B01G300300 chr6D 95.330 364 14 2 2881 3243 357010040 357010401 6.930000e-160 575.0
46 TraesCS6B01G300300 chr6D 83.654 520 22 15 193 679 357007126 357007615 1.590000e-116 431.0
47 TraesCS6B01G300300 chr6D 89.453 256 23 4 2512 2764 12490781 12491035 3.590000e-83 320.0
48 TraesCS6B01G300300 chr6D 94.301 193 11 0 1667 1859 357008945 357009137 6.050000e-76 296.0
49 TraesCS6B01G300300 chr6D 93.939 165 10 0 7803 7967 450750375 450750211 4.770000e-62 250.0
50 TraesCS6B01G300300 chr6D 81.416 226 22 5 2204 2428 12490493 12490699 4.950000e-37 167.0
51 TraesCS6B01G300300 chr6D 93.617 47 3 0 1624 1670 357008851 357008897 3.990000e-08 71.3
52 TraesCS6B01G300300 chr1D 95.062 810 39 1 3732 4540 208423488 208424297 0.000000e+00 1273.0
53 TraesCS6B01G300300 chr1D 93.529 170 11 0 7798 7967 393126735 393126566 3.690000e-63 254.0
54 TraesCS6B01G300300 chr2A 82.018 456 62 12 971 1413 6243526 6243974 3.510000e-98 370.0
55 TraesCS6B01G300300 chr2A 81.758 455 65 11 971 1413 6056131 6055683 1.630000e-96 364.0
56 TraesCS6B01G300300 chr2A 81.360 456 65 12 971 1413 6112036 6111588 3.540000e-93 353.0
57 TraesCS6B01G300300 chr2A 81.319 455 66 12 971 1413 6020710 6020263 1.270000e-92 351.0
58 TraesCS6B01G300300 chr2A 80.044 451 69 14 971 1413 6163737 6163300 1.670000e-81 315.0
59 TraesCS6B01G300300 chr2A 94.118 170 10 0 7798 7967 231291796 231291627 7.930000e-65 259.0
60 TraesCS6B01G300300 chr2A 90.566 53 4 1 2141 2192 554740555 554740607 1.430000e-07 69.4
61 TraesCS6B01G300300 chr5A 86.667 255 32 2 2512 2764 450366245 450365991 1.690000e-71 281.0
62 TraesCS6B01G300300 chr5A 92.941 170 12 0 7795 7964 134748924 134749093 1.720000e-61 248.0
63 TraesCS6B01G300300 chr5A 92.941 170 12 0 7795 7964 505515131 505515300 1.720000e-61 248.0
64 TraesCS6B01G300300 chr5A 84.516 155 22 2 2204 2358 450366533 450366381 1.380000e-32 152.0
65 TraesCS6B01G300300 chr5A 90.909 55 3 2 2375 2428 450366380 450366327 1.110000e-08 73.1
66 TraesCS6B01G300300 chr5D 95.597 159 7 0 7804 7962 556633721 556633563 1.030000e-63 255.0
67 TraesCS6B01G300300 chr4D 94.545 165 9 0 7803 7967 505657017 505656853 1.030000e-63 255.0
68 TraesCS6B01G300300 chr4D 95.522 67 3 0 2127 2193 367719960 367719894 3.040000e-19 108.0
69 TraesCS6B01G300300 chr4A 95.000 160 8 0 7803 7962 216173943 216173784 1.330000e-62 252.0
70 TraesCS6B01G300300 chr4A 92.941 170 12 0 7795 7964 502593104 502593273 1.720000e-61 248.0
71 TraesCS6B01G300300 chr4A 91.463 82 7 0 2111 2192 97531502 97531583 6.530000e-21 113.0
72 TraesCS6B01G300300 chr7A 91.765 170 13 1 7795 7964 641826328 641826496 1.340000e-57 235.0
73 TraesCS6B01G300300 chr7A 85.507 69 4 6 2124 2189 727413602 727413667 5.160000e-07 67.6
74 TraesCS6B01G300300 chr7D 81.319 91 9 7 2103 2189 638492243 638492157 5.160000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G300300 chr6B 538367563 538375529 7966 False 2435.866667 8416 97.858667 1 7967 6 chr6B.!!$F2 7966
1 TraesCS6B01G300300 chr6B 613602269 613603795 1526 True 2324.000000 2324 94.118000 4917 6446 1 chr6B.!!$R1 1529
2 TraesCS6B01G300300 chr5B 102394597 102397350 2753 False 1925.500000 2519 95.613500 3728 6452 2 chr5B.!!$F3 2724
3 TraesCS6B01G300300 chr5B 511367323 511368127 804 False 1212.000000 1212 93.584000 3732 4557 1 chr5B.!!$F2 825
4 TraesCS6B01G300300 chr1B 288954935 288957934 2999 True 1843.500000 2457 95.053500 3732 6446 2 chr1B.!!$R2 2714
5 TraesCS6B01G300300 chr1B 260266635 260267460 825 True 1238.000000 1238 93.705000 3732 4557 1 chr1B.!!$R1 825
6 TraesCS6B01G300300 chr2B 453233403 453234944 1541 True 2292.000000 2292 93.509000 4884 6429 1 chr2B.!!$R1 1545
7 TraesCS6B01G300300 chr2B 470904637 470907037 2400 False 1707.000000 2289 92.687000 3731 6446 2 chr2B.!!$F3 2715
8 TraesCS6B01G300300 chr2B 207205093 207207722 2629 False 1644.000000 2218 92.518500 3726 6449 2 chr2B.!!$F2 2723
9 TraesCS6B01G300300 chr7B 123432548 123434080 1532 False 2276.000000 2276 93.398000 4895 6437 1 chr7B.!!$F1 1542
10 TraesCS6B01G300300 chr3B 70591404 70594025 2621 False 1780.500000 2246 95.062500 3732 6329 2 chr3B.!!$F2 2597
11 TraesCS6B01G300300 chr4B 111907291 111908877 1586 False 2228.000000 2228 92.196000 4881 6450 1 chr4B.!!$F1 1569
12 TraesCS6B01G300300 chr4B 11678852 11679677 825 True 1277.000000 1277 94.559000 3731 4557 1 chr4B.!!$R1 826
13 TraesCS6B01G300300 chr6A 499401060 499406376 5316 False 555.666667 1980 87.509444 1 7964 9 chr6A.!!$F1 7963
14 TraesCS6B01G300300 chr6D 357007126 357012422 5296 False 696.922222 1517 91.547889 193 7964 9 chr6D.!!$F2 7771
15 TraesCS6B01G300300 chr6D 12490493 12491035 542 False 243.500000 320 85.434500 2204 2764 2 chr6D.!!$F1 560
16 TraesCS6B01G300300 chr1D 208423488 208424297 809 False 1273.000000 1273 95.062000 3732 4540 1 chr1D.!!$F1 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 1127 0.030908 CCCAGCTACTAGCAGTACGC 59.969 60.0 10.73 2.08 45.56 4.42 F
1269 1521 0.101399 CTTCACCGTCTCATCTCCGG 59.899 60.0 0.00 0.00 46.93 5.14 F
1326 1580 0.102481 TACTTTCGAGGCGATCCTGC 59.898 55.0 0.00 0.00 44.46 4.85 F
2012 2671 0.463654 TGAACATGCAGGATACCGGC 60.464 55.0 4.84 6.01 44.67 6.13 F
2780 3505 0.885196 TGCGGCAAACCTTGATAACC 59.115 50.0 0.00 0.00 0.00 2.85 F
4194 5550 0.975135 CCATCGCTGATCCTCTCCAT 59.025 55.0 0.00 0.00 0.00 3.41 F
4303 5659 0.744414 CATAACCCTCCACCACGCTG 60.744 60.0 0.00 0.00 0.00 5.18 F
5526 10166 0.317479 GGTGCAAGACTACACCGACT 59.683 55.0 10.85 0.00 46.32 4.18 F
6558 11235 0.965363 TCGGGCAAAGGCTCATTTCC 60.965 55.0 0.00 0.00 42.15 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 3031 0.744414 CGACGGCCAACTCATCCATT 60.744 55.000 2.24 0.0 0.00 3.16 R
2761 3486 0.885196 GGTTATCAAGGTTTGCCGCA 59.115 50.000 0.00 0.0 40.50 5.69 R
2762 3487 1.135402 CAGGTTATCAAGGTTTGCCGC 60.135 52.381 0.00 0.0 40.50 6.53 R
3367 4711 1.402787 AGTGCCCTTTGTGGTTTCAG 58.597 50.000 0.00 0.0 0.00 3.02 R
4302 5658 0.462225 CTCCGAGGAGTAGACGAGCA 60.462 60.000 10.88 0.0 37.47 4.26 R
5251 9891 0.320697 GTTAAGCAGGTCCTCCGTGT 59.679 55.000 0.00 0.0 39.05 4.49 R
6115 10755 1.136828 ACTTGAGCCACAACCCACTA 58.863 50.000 0.00 0.0 34.56 2.74 R
6679 11359 0.106708 TGTGACCCAGTCAGCAGAAC 59.893 55.000 0.00 0.0 43.57 3.01 R
7495 12183 3.191162 TGCTGAACATTTTCCTGAATCCG 59.809 43.478 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 7.525158 TTTAGGGGAAGTTCCAAGATATTCT 57.475 36.000 23.33 9.13 38.64 2.40
55 57 5.492524 AGGGGAAGTTCCAAGATATTCTGAA 59.507 40.000 23.33 0.00 38.64 3.02
59 61 8.214364 GGGAAGTTCCAAGATATTCTGAATAGT 58.786 37.037 23.33 3.34 38.64 2.12
61 63 8.970859 AAGTTCCAAGATATTCTGAATAGTGG 57.029 34.615 20.77 20.77 0.00 4.00
62 64 8.095452 AGTTCCAAGATATTCTGAATAGTGGT 57.905 34.615 23.29 8.43 31.05 4.16
93 97 1.376649 ATCTGCTTCCCTGGACCTTT 58.623 50.000 0.00 0.00 0.00 3.11
94 98 0.401738 TCTGCTTCCCTGGACCTTTG 59.598 55.000 0.00 0.00 0.00 2.77
109 117 5.065914 GGACCTTTGCTGCATATCTTGATA 58.934 41.667 1.84 0.00 0.00 2.15
114 122 7.174599 ACCTTTGCTGCATATCTTGATAATCTC 59.825 37.037 1.84 0.00 0.00 2.75
120 128 5.174395 GCATATCTTGATAATCTCCGCTGT 58.826 41.667 0.00 0.00 0.00 4.40
150 158 6.283694 GGGCAGAGAAGAATGTTTTTCTTTT 58.716 36.000 2.43 0.00 38.73 2.27
151 159 6.763135 GGGCAGAGAAGAATGTTTTTCTTTTT 59.237 34.615 2.43 0.00 38.73 1.94
159 167 8.785329 AAGAATGTTTTTCTTTTTAAGGCACA 57.215 26.923 0.00 0.00 35.39 4.57
164 172 9.696917 ATGTTTTTCTTTTTAAGGCACATAGAG 57.303 29.630 0.00 0.00 0.00 2.43
231 395 1.761711 TGGGTAATCTTGGGTTCCCA 58.238 50.000 6.46 6.46 41.96 4.37
257 421 2.743928 GAGAAGCACCGCACCAGG 60.744 66.667 0.00 0.00 37.30 4.45
260 424 4.586235 AAGCACCGCACCAGGCTT 62.586 61.111 0.00 0.00 41.44 4.35
336 504 4.326766 CTTGCGTTGCGTGGGGTG 62.327 66.667 0.00 0.00 0.00 4.61
449 637 1.637478 GATTGAAACCCGCCGCGTAA 61.637 55.000 12.58 0.00 0.00 3.18
473 669 2.907407 GCCCTGGCCGCCTATTTC 60.907 66.667 11.61 0.00 34.56 2.17
538 739 3.702048 GGCCGTAGCACCACTCCA 61.702 66.667 0.00 0.00 42.56 3.86
545 746 1.621814 GTAGCACCACTCCACCTACAA 59.378 52.381 0.00 0.00 0.00 2.41
546 747 0.396811 AGCACCACTCCACCTACAAC 59.603 55.000 0.00 0.00 0.00 3.32
547 748 0.107831 GCACCACTCCACCTACAACA 59.892 55.000 0.00 0.00 0.00 3.33
548 749 1.271379 GCACCACTCCACCTACAACAT 60.271 52.381 0.00 0.00 0.00 2.71
625 857 8.794335 ATTTACTCCTTGACCTCTGAATTTAC 57.206 34.615 0.00 0.00 0.00 2.01
626 858 5.825593 ACTCCTTGACCTCTGAATTTACA 57.174 39.130 0.00 0.00 0.00 2.41
627 859 6.380079 ACTCCTTGACCTCTGAATTTACAT 57.620 37.500 0.00 0.00 0.00 2.29
628 860 6.176183 ACTCCTTGACCTCTGAATTTACATG 58.824 40.000 0.00 0.00 0.00 3.21
629 861 5.500234 TCCTTGACCTCTGAATTTACATGG 58.500 41.667 0.00 0.00 0.00 3.66
630 862 5.250543 TCCTTGACCTCTGAATTTACATGGA 59.749 40.000 0.00 0.00 0.00 3.41
631 863 5.945784 CCTTGACCTCTGAATTTACATGGAA 59.054 40.000 0.00 0.00 0.00 3.53
632 864 6.604795 CCTTGACCTCTGAATTTACATGGAAT 59.395 38.462 0.00 0.00 0.00 3.01
633 865 7.201767 CCTTGACCTCTGAATTTACATGGAATC 60.202 40.741 0.00 0.00 0.00 2.52
669 901 2.017138 TGGCGAAGATGCACGAAATA 57.983 45.000 0.00 0.00 36.28 1.40
679 911 5.978814 AGATGCACGAAATAAACTAGGACT 58.021 37.500 0.00 0.00 0.00 3.85
680 912 6.043411 AGATGCACGAAATAAACTAGGACTC 58.957 40.000 0.00 0.00 0.00 3.36
681 913 4.501071 TGCACGAAATAAACTAGGACTCC 58.499 43.478 0.00 0.00 0.00 3.85
682 914 4.222145 TGCACGAAATAAACTAGGACTCCT 59.778 41.667 2.31 2.31 37.71 3.69
683 915 4.804665 GCACGAAATAAACTAGGACTCCTC 59.195 45.833 0.00 0.00 34.61 3.71
684 916 5.349809 CACGAAATAAACTAGGACTCCTCC 58.650 45.833 0.00 0.00 34.61 4.30
686 918 5.360429 ACGAAATAAACTAGGACTCCTCCTC 59.640 44.000 0.00 0.00 44.59 3.71
687 919 5.595133 CGAAATAAACTAGGACTCCTCCTCT 59.405 44.000 0.00 0.00 44.59 3.69
688 920 6.097129 CGAAATAAACTAGGACTCCTCCTCTT 59.903 42.308 0.00 0.00 44.59 2.85
689 921 7.426606 AAATAAACTAGGACTCCTCCTCTTC 57.573 40.000 0.00 0.00 44.59 2.87
690 922 4.685513 AAACTAGGACTCCTCCTCTTCT 57.314 45.455 0.00 0.00 44.59 2.85
691 923 3.945640 ACTAGGACTCCTCCTCTTCTC 57.054 52.381 0.00 0.00 44.59 2.87
692 924 3.470868 ACTAGGACTCCTCCTCTTCTCT 58.529 50.000 0.00 0.00 44.59 3.10
693 925 3.856206 ACTAGGACTCCTCCTCTTCTCTT 59.144 47.826 0.00 0.00 44.59 2.85
694 926 3.845109 AGGACTCCTCCTCTTCTCTTT 57.155 47.619 0.00 0.00 44.59 2.52
695 927 3.440127 AGGACTCCTCCTCTTCTCTTTG 58.560 50.000 0.00 0.00 44.59 2.77
696 928 2.093711 GGACTCCTCCTCTTCTCTTTGC 60.094 54.545 0.00 0.00 33.07 3.68
697 929 2.831526 GACTCCTCCTCTTCTCTTTGCT 59.168 50.000 0.00 0.00 0.00 3.91
698 930 3.247162 ACTCCTCCTCTTCTCTTTGCTT 58.753 45.455 0.00 0.00 0.00 3.91
699 931 3.007831 ACTCCTCCTCTTCTCTTTGCTTG 59.992 47.826 0.00 0.00 0.00 4.01
700 932 3.242867 TCCTCCTCTTCTCTTTGCTTGA 58.757 45.455 0.00 0.00 0.00 3.02
701 933 3.648067 TCCTCCTCTTCTCTTTGCTTGAA 59.352 43.478 0.00 0.00 0.00 2.69
702 934 4.002316 CCTCCTCTTCTCTTTGCTTGAAG 58.998 47.826 0.00 0.00 38.69 3.02
703 935 4.504689 CCTCCTCTTCTCTTTGCTTGAAGT 60.505 45.833 0.00 0.00 38.52 3.01
704 936 5.279708 CCTCCTCTTCTCTTTGCTTGAAGTA 60.280 44.000 0.00 0.00 38.52 2.24
705 937 6.365970 TCCTCTTCTCTTTGCTTGAAGTAT 57.634 37.500 0.00 0.00 38.52 2.12
706 938 6.773638 TCCTCTTCTCTTTGCTTGAAGTATT 58.226 36.000 0.00 0.00 38.52 1.89
731 963 2.370349 TCAGATTCTGACGAGGAGGTC 58.630 52.381 12.38 0.00 35.39 3.85
745 977 3.138798 GGTCTAGTCGGCGAGGCA 61.139 66.667 11.20 0.00 0.00 4.75
779 1012 2.972505 AGCACGAAACACCGGCAG 60.973 61.111 0.00 0.00 0.00 4.85
780 1013 3.276846 GCACGAAACACCGGCAGT 61.277 61.111 0.00 0.00 0.00 4.40
781 1014 1.957186 GCACGAAACACCGGCAGTA 60.957 57.895 0.00 0.00 0.00 2.74
803 1037 1.153369 GGCAGAGCTAACGCCATCA 60.153 57.895 14.10 0.00 45.52 3.07
826 1060 4.059511 TCACCGGCCAACATAAATATACG 58.940 43.478 0.00 0.00 0.00 3.06
827 1061 4.059511 CACCGGCCAACATAAATATACGA 58.940 43.478 0.00 0.00 0.00 3.43
828 1062 4.151689 CACCGGCCAACATAAATATACGAG 59.848 45.833 0.00 0.00 0.00 4.18
832 1066 6.154445 CGGCCAACATAAATATACGAGTACT 58.846 40.000 2.24 0.00 0.00 2.73
834 1068 7.272084 CGGCCAACATAAATATACGAGTACTAC 59.728 40.741 2.24 0.00 0.00 2.73
843 1077 1.138247 CGAGTACTACCACCACGGC 59.862 63.158 0.00 0.00 39.03 5.68
844 1078 1.138247 GAGTACTACCACCACGGCG 59.862 63.158 4.80 4.80 39.03 6.46
858 1092 2.729491 GGCGAACGTTTTGCTGCC 60.729 61.111 21.00 16.33 40.04 4.85
864 1105 0.666374 AACGTTTTGCTGCCACTACC 59.334 50.000 0.00 0.00 0.00 3.18
866 1111 1.169661 CGTTTTGCTGCCACTACCCA 61.170 55.000 0.00 0.00 0.00 4.51
872 1117 2.596776 CTGCCACTACCCAGCTACT 58.403 57.895 0.00 0.00 0.00 2.57
875 1120 0.389757 GCCACTACCCAGCTACTAGC 59.610 60.000 0.00 0.00 42.84 3.42
877 1122 1.683917 CCACTACCCAGCTACTAGCAG 59.316 57.143 10.73 2.17 45.56 4.24
878 1123 2.379972 CACTACCCAGCTACTAGCAGT 58.620 52.381 10.73 7.13 45.56 4.40
882 1127 0.030908 CCCAGCTACTAGCAGTACGC 59.969 60.000 10.73 2.08 45.56 4.42
886 1131 1.201098 GCTACTAGCAGTACGCACGC 61.201 60.000 2.96 2.65 46.13 5.34
912 1158 2.568090 CGGCGGCAAAAGCAATCT 59.432 55.556 10.53 0.00 36.08 2.40
913 1159 1.802715 CGGCGGCAAAAGCAATCTG 60.803 57.895 10.53 0.00 36.08 2.90
916 1162 1.605202 GGCGGCAAAAGCAATCTGAAA 60.605 47.619 3.07 0.00 36.08 2.69
917 1163 1.456923 GCGGCAAAAGCAATCTGAAAC 59.543 47.619 0.00 0.00 34.19 2.78
924 1170 2.683211 AGCAATCTGAAACAGGGGTT 57.317 45.000 0.00 0.00 39.43 4.11
976 1226 2.126888 TTTCGTCGTCGGCGGTAC 60.127 61.111 20.32 0.00 38.89 3.34
1035 1287 0.404812 AGGACGTGGAGGAGTACAGT 59.595 55.000 0.00 0.00 0.00 3.55
1074 1326 4.570663 CGCCTCATCCCGGTCGTC 62.571 72.222 0.00 0.00 0.00 4.20
1269 1521 0.101399 CTTCACCGTCTCATCTCCGG 59.899 60.000 0.00 0.00 46.93 5.14
1291 1543 1.448013 GCGCGCTTCTCTAGGGTTT 60.448 57.895 26.67 0.00 38.96 3.27
1292 1544 1.019805 GCGCGCTTCTCTAGGGTTTT 61.020 55.000 26.67 0.00 38.96 2.43
1293 1545 1.738030 GCGCGCTTCTCTAGGGTTTTA 60.738 52.381 26.67 0.00 38.96 1.52
1295 1547 2.416972 CGCGCTTCTCTAGGGTTTTACT 60.417 50.000 5.56 0.00 38.96 2.24
1296 1548 3.597255 GCGCTTCTCTAGGGTTTTACTT 58.403 45.455 0.00 0.00 38.96 2.24
1326 1580 0.102481 TACTTTCGAGGCGATCCTGC 59.898 55.000 0.00 0.00 44.46 4.85
1344 1598 3.750130 CCTGCTTCCCTAATCAATCATCG 59.250 47.826 0.00 0.00 0.00 3.84
1422 1676 6.693978 TGTCGATCGGTACATACTGTATTTTG 59.306 38.462 16.41 0.00 35.05 2.44
1450 1705 1.173043 TCCATTTGGCGGCTTGTTAG 58.827 50.000 11.43 0.00 34.44 2.34
1490 1745 0.671781 CCGGCTCTACCATGCTATGC 60.672 60.000 0.00 0.00 39.03 3.14
1493 1748 1.071385 GGCTCTACCATGCTATGCACT 59.929 52.381 0.00 0.00 43.04 4.40
1494 1749 2.411904 GCTCTACCATGCTATGCACTC 58.588 52.381 0.00 0.00 43.04 3.51
1495 1750 2.036992 GCTCTACCATGCTATGCACTCT 59.963 50.000 0.00 0.00 43.04 3.24
1496 1751 3.256879 GCTCTACCATGCTATGCACTCTA 59.743 47.826 0.00 0.00 43.04 2.43
1500 1755 6.830912 TCTACCATGCTATGCACTCTAATTT 58.169 36.000 0.00 0.00 43.04 1.82
1504 1759 4.637483 TGCTATGCACTCTAATTTTGGC 57.363 40.909 0.00 0.00 31.71 4.52
1510 1765 4.402829 TGCACTCTAATTTTGGCTTGGTA 58.597 39.130 0.00 0.00 0.00 3.25
1577 1843 1.302832 CAGTCCAGCCACCCAACTC 60.303 63.158 0.00 0.00 0.00 3.01
1579 1845 1.003233 GTCCAGCCACCCAACTCTC 60.003 63.158 0.00 0.00 0.00 3.20
1586 1852 1.594293 CACCCAACTCTCGCACGTT 60.594 57.895 0.00 0.00 0.00 3.99
1599 1865 4.687018 TCTCGCACGTTAAAATGAAGCTAA 59.313 37.500 0.00 0.00 0.00 3.09
1627 1893 2.603915 GCTGCGTGCCAACATTTTT 58.396 47.368 0.00 0.00 35.15 1.94
1634 2237 3.097185 CGTGCCAACATTTTTGTTTTGC 58.903 40.909 0.00 0.00 0.00 3.68
1695 2349 4.524802 TGAGGCACCATCCTTTGATTAT 57.475 40.909 0.00 0.00 36.38 1.28
1727 2381 2.341257 CCACGACCTCATCAACTTGAG 58.659 52.381 0.00 0.00 42.31 3.02
1729 2383 3.056821 CCACGACCTCATCAACTTGAGTA 60.057 47.826 0.00 0.00 41.30 2.59
1736 2390 5.014123 ACCTCATCAACTTGAGTATTCCCAA 59.986 40.000 0.00 0.00 41.30 4.12
1820 2478 3.255642 GCAATCAGGAAAGTTGTTGGCTA 59.744 43.478 0.00 0.00 0.00 3.93
1825 2483 6.614694 TCAGGAAAGTTGTTGGCTAGTATA 57.385 37.500 0.00 0.00 0.00 1.47
1859 2517 5.698104 TGGATTCATGTTGCTAGGATGATT 58.302 37.500 0.00 0.00 0.00 2.57
1861 2519 5.533903 GGATTCATGTTGCTAGGATGATTGT 59.466 40.000 0.00 0.00 0.00 2.71
1862 2520 5.823209 TTCATGTTGCTAGGATGATTGTG 57.177 39.130 0.00 0.00 0.00 3.33
1863 2521 4.847198 TCATGTTGCTAGGATGATTGTGT 58.153 39.130 0.00 0.00 0.00 3.72
1865 2523 5.355071 TCATGTTGCTAGGATGATTGTGTTC 59.645 40.000 0.00 0.00 0.00 3.18
1866 2524 4.650734 TGTTGCTAGGATGATTGTGTTCA 58.349 39.130 0.00 0.00 0.00 3.18
1867 2525 5.069318 TGTTGCTAGGATGATTGTGTTCAA 58.931 37.500 0.00 0.00 37.98 2.69
1868 2526 5.534278 TGTTGCTAGGATGATTGTGTTCAAA 59.466 36.000 0.00 0.00 37.11 2.69
1869 2527 6.040278 TGTTGCTAGGATGATTGTGTTCAAAA 59.960 34.615 0.00 0.00 37.11 2.44
1870 2528 6.647334 TGCTAGGATGATTGTGTTCAAAAA 57.353 33.333 0.00 0.00 37.11 1.94
1891 2549 6.801539 AAAAATGTTGCTAGAATGACGAGA 57.198 33.333 0.00 0.00 0.00 4.04
1892 2550 6.801539 AAAATGTTGCTAGAATGACGAGAA 57.198 33.333 0.00 0.00 0.00 2.87
1893 2551 6.801539 AAATGTTGCTAGAATGACGAGAAA 57.198 33.333 0.00 0.00 0.00 2.52
1911 2569 7.828712 ACGAGAAAGCCAGGATAGTATAATAC 58.171 38.462 0.00 0.00 0.00 1.89
1976 2635 8.768957 ATATTCTGAATTACCGTGAGATCATG 57.231 34.615 8.38 0.00 0.00 3.07
2012 2671 0.463654 TGAACATGCAGGATACCGGC 60.464 55.000 4.84 6.01 44.67 6.13
2020 2679 1.747206 GCAGGATACCGGCTCATGTTT 60.747 52.381 17.37 0.00 41.35 2.83
2064 2724 5.168569 CGGCTGTGTTTCAGTTTATCTCTA 58.831 41.667 0.00 0.00 45.23 2.43
2112 2772 7.116376 TGTCTAATTCGCTTTACTTCTGAACTG 59.884 37.037 0.00 0.00 0.00 3.16
2122 2782 7.534723 TTTACTTCTGAACTGCTCCTTAGTA 57.465 36.000 0.00 0.00 0.00 1.82
2132 2792 3.293337 TGCTCCTTAGTAAGCCGATGTA 58.707 45.455 4.22 0.00 37.73 2.29
2141 2801 7.542477 CCTTAGTAAGCCGATGTATGAACTATG 59.458 40.741 4.22 0.00 0.00 2.23
2163 2823 6.899393 TGGTTTCATTATGATAATGGAGCC 57.101 37.500 24.52 24.52 37.13 4.70
2227 2887 6.915300 TCACGTTTTGTAATCAATTTCCACTG 59.085 34.615 0.00 0.00 33.32 3.66
2343 3031 7.737869 TGGTATACAACAAAAGTCAGGAACTA 58.262 34.615 5.01 0.00 37.17 2.24
2451 3175 3.865164 GGATTCATTTGCGTTTTGGGATC 59.135 43.478 0.00 0.00 0.00 3.36
2466 3190 2.426738 TGGGATCCAAGCTTAAAATGCG 59.573 45.455 15.23 0.00 35.28 4.73
2515 3239 4.098654 AGCTATGCAGACTATTTCTCGTGT 59.901 41.667 0.00 0.00 28.96 4.49
2566 3291 4.379499 CCTGTTTCGCTTTCATAGTTTCCC 60.379 45.833 0.00 0.00 0.00 3.97
2587 3312 7.328404 TCCCTAAGGAATTGATATATGTGCA 57.672 36.000 0.00 0.00 40.08 4.57
2599 3324 8.425237 TTGATATATGTGCATTTGATTGGGAT 57.575 30.769 0.00 0.00 0.00 3.85
2746 3471 5.897050 CAGAGGTATCTGTCTCTAAACCAC 58.103 45.833 0.00 0.00 46.68 4.16
2747 3472 5.419155 CAGAGGTATCTGTCTCTAAACCACA 59.581 44.000 0.00 0.00 46.68 4.17
2748 3473 5.654650 AGAGGTATCTGTCTCTAAACCACAG 59.345 44.000 0.00 0.00 38.46 3.66
2749 3474 5.334421 AGGTATCTGTCTCTAAACCACAGT 58.666 41.667 0.00 0.00 38.94 3.55
2750 3475 5.780793 AGGTATCTGTCTCTAAACCACAGTT 59.219 40.000 0.00 0.00 38.94 3.16
2751 3476 6.952358 AGGTATCTGTCTCTAAACCACAGTTA 59.048 38.462 0.00 0.00 38.94 2.24
2752 3477 7.453752 AGGTATCTGTCTCTAAACCACAGTTAA 59.546 37.037 0.00 0.00 38.94 2.01
2753 3478 7.760340 GGTATCTGTCTCTAAACCACAGTTAAG 59.240 40.741 0.00 0.00 38.94 1.85
2754 3479 6.726490 TCTGTCTCTAAACCACAGTTAAGT 57.274 37.500 0.00 0.00 38.94 2.24
2755 3480 7.120923 TCTGTCTCTAAACCACAGTTAAGTT 57.879 36.000 0.00 0.00 38.94 2.66
2756 3481 7.208080 TCTGTCTCTAAACCACAGTTAAGTTC 58.792 38.462 0.00 0.00 38.94 3.01
2757 3482 6.285990 TGTCTCTAAACCACAGTTAAGTTCC 58.714 40.000 0.00 0.00 34.19 3.62
2758 3483 5.404667 GTCTCTAAACCACAGTTAAGTTCCG 59.595 44.000 0.00 0.00 34.19 4.30
2759 3484 5.302568 TCTCTAAACCACAGTTAAGTTCCGA 59.697 40.000 0.00 0.00 34.19 4.55
2760 3485 5.291971 TCTAAACCACAGTTAAGTTCCGAC 58.708 41.667 0.00 0.00 34.19 4.79
2761 3486 3.832615 AACCACAGTTAAGTTCCGACT 57.167 42.857 0.00 0.00 37.87 4.18
2762 3487 3.107642 ACCACAGTTAAGTTCCGACTG 57.892 47.619 10.66 10.66 44.77 3.51
2763 3488 1.798813 CCACAGTTAAGTTCCGACTGC 59.201 52.381 11.67 0.00 43.44 4.40
2764 3489 1.455786 CACAGTTAAGTTCCGACTGCG 59.544 52.381 11.67 2.30 43.44 5.18
2774 3499 2.252260 CGACTGCGGCAAACCTTG 59.748 61.111 3.44 0.00 0.00 3.61
2775 3500 2.250939 CGACTGCGGCAAACCTTGA 61.251 57.895 3.44 0.00 0.00 3.02
2776 3501 1.577328 CGACTGCGGCAAACCTTGAT 61.577 55.000 3.44 0.00 0.00 2.57
2777 3502 1.448985 GACTGCGGCAAACCTTGATA 58.551 50.000 3.44 0.00 0.00 2.15
2778 3503 1.810151 GACTGCGGCAAACCTTGATAA 59.190 47.619 3.44 0.00 0.00 1.75
2779 3504 1.539827 ACTGCGGCAAACCTTGATAAC 59.460 47.619 3.44 0.00 0.00 1.89
2780 3505 0.885196 TGCGGCAAACCTTGATAACC 59.115 50.000 0.00 0.00 0.00 2.85
2781 3506 1.173913 GCGGCAAACCTTGATAACCT 58.826 50.000 0.00 0.00 0.00 3.50
2782 3507 1.135402 GCGGCAAACCTTGATAACCTG 60.135 52.381 0.00 0.00 0.00 4.00
2783 3508 2.432444 CGGCAAACCTTGATAACCTGA 58.568 47.619 0.00 0.00 0.00 3.86
2784 3509 2.420022 CGGCAAACCTTGATAACCTGAG 59.580 50.000 0.00 0.00 0.00 3.35
2785 3510 2.755103 GGCAAACCTTGATAACCTGAGG 59.245 50.000 0.00 0.00 35.39 3.86
2786 3511 3.561313 GGCAAACCTTGATAACCTGAGGA 60.561 47.826 4.99 0.00 33.47 3.71
2787 3512 3.691609 GCAAACCTTGATAACCTGAGGAG 59.308 47.826 4.99 0.00 33.47 3.69
2788 3513 3.636153 AACCTTGATAACCTGAGGAGC 57.364 47.619 4.99 0.00 33.47 4.70
2789 3514 2.839228 ACCTTGATAACCTGAGGAGCT 58.161 47.619 4.99 0.00 33.47 4.09
2790 3515 2.503356 ACCTTGATAACCTGAGGAGCTG 59.497 50.000 4.99 0.00 33.47 4.24
2791 3516 2.768527 CCTTGATAACCTGAGGAGCTGA 59.231 50.000 4.99 0.00 0.00 4.26
2792 3517 3.390639 CCTTGATAACCTGAGGAGCTGAT 59.609 47.826 4.99 0.00 0.00 2.90
2793 3518 4.378774 CTTGATAACCTGAGGAGCTGATG 58.621 47.826 4.99 0.00 0.00 3.07
2794 3519 3.646534 TGATAACCTGAGGAGCTGATGA 58.353 45.455 4.99 0.00 0.00 2.92
2795 3520 3.640498 TGATAACCTGAGGAGCTGATGAG 59.360 47.826 4.99 0.00 0.00 2.90
2796 3521 1.949799 AACCTGAGGAGCTGATGAGT 58.050 50.000 4.99 0.00 0.00 3.41
2797 3522 1.949799 ACCTGAGGAGCTGATGAGTT 58.050 50.000 4.99 0.00 0.00 3.01
2798 3523 3.107402 ACCTGAGGAGCTGATGAGTTA 57.893 47.619 4.99 0.00 0.00 2.24
2799 3524 3.030291 ACCTGAGGAGCTGATGAGTTAG 58.970 50.000 4.99 0.00 0.00 2.34
2800 3525 2.224018 CCTGAGGAGCTGATGAGTTAGC 60.224 54.545 0.00 0.00 40.18 3.09
2811 3536 6.507900 GCTGATGAGTTAGCTATGTAGTTCA 58.492 40.000 0.00 0.00 36.99 3.18
2812 3537 7.151308 GCTGATGAGTTAGCTATGTAGTTCAT 58.849 38.462 0.00 0.00 40.25 2.57
2813 3538 7.655328 GCTGATGAGTTAGCTATGTAGTTCATT 59.345 37.037 0.00 0.00 37.91 2.57
2815 3540 9.967346 TGATGAGTTAGCTATGTAGTTCATTAC 57.033 33.333 0.00 0.00 37.91 1.89
2816 3541 9.413048 GATGAGTTAGCTATGTAGTTCATTACC 57.587 37.037 0.00 0.00 37.91 2.85
2817 3542 8.534954 TGAGTTAGCTATGTAGTTCATTACCT 57.465 34.615 0.00 0.00 37.91 3.08
2818 3543 8.978472 TGAGTTAGCTATGTAGTTCATTACCTT 58.022 33.333 0.00 0.00 37.91 3.50
2819 3544 9.250624 GAGTTAGCTATGTAGTTCATTACCTTG 57.749 37.037 0.00 0.00 37.91 3.61
2820 3545 8.204836 AGTTAGCTATGTAGTTCATTACCTTGG 58.795 37.037 0.00 0.00 37.91 3.61
2821 3546 5.368989 AGCTATGTAGTTCATTACCTTGGC 58.631 41.667 0.00 0.00 37.91 4.52
2822 3547 4.515567 GCTATGTAGTTCATTACCTTGGCC 59.484 45.833 0.00 0.00 37.91 5.36
2823 3548 4.584638 ATGTAGTTCATTACCTTGGCCA 57.415 40.909 0.00 0.00 32.08 5.36
2824 3549 4.374689 TGTAGTTCATTACCTTGGCCAA 57.625 40.909 19.25 19.25 0.00 4.52
2825 3550 4.076394 TGTAGTTCATTACCTTGGCCAAC 58.924 43.478 16.05 1.50 0.00 3.77
2826 3551 3.237268 AGTTCATTACCTTGGCCAACA 57.763 42.857 16.05 0.00 0.00 3.33
2827 3552 3.778265 AGTTCATTACCTTGGCCAACAT 58.222 40.909 16.05 8.10 0.00 2.71
2828 3553 4.159557 AGTTCATTACCTTGGCCAACATT 58.840 39.130 16.05 3.88 0.00 2.71
2829 3554 5.329399 AGTTCATTACCTTGGCCAACATTA 58.671 37.500 16.05 2.79 0.00 1.90
2830 3555 5.957774 AGTTCATTACCTTGGCCAACATTAT 59.042 36.000 16.05 1.83 0.00 1.28
2831 3556 7.122715 AGTTCATTACCTTGGCCAACATTATA 58.877 34.615 16.05 0.00 0.00 0.98
2832 3557 7.617723 AGTTCATTACCTTGGCCAACATTATAA 59.382 33.333 16.05 9.07 0.00 0.98
2833 3558 8.421002 GTTCATTACCTTGGCCAACATTATAAT 58.579 33.333 16.05 10.89 0.00 1.28
2834 3559 9.647918 TTCATTACCTTGGCCAACATTATAATA 57.352 29.630 16.05 0.00 0.00 0.98
2835 3560 9.647918 TCATTACCTTGGCCAACATTATAATAA 57.352 29.630 16.05 4.97 0.00 1.40
2836 3561 9.691362 CATTACCTTGGCCAACATTATAATAAC 57.309 33.333 16.05 0.00 0.00 1.89
2837 3562 6.724893 ACCTTGGCCAACATTATAATAACC 57.275 37.500 16.05 0.00 0.00 2.85
2838 3563 6.440354 ACCTTGGCCAACATTATAATAACCT 58.560 36.000 16.05 0.00 0.00 3.50
2839 3564 6.323739 ACCTTGGCCAACATTATAATAACCTG 59.676 38.462 16.05 0.00 0.00 4.00
2840 3565 6.549364 CCTTGGCCAACATTATAATAACCTGA 59.451 38.462 16.05 0.00 0.00 3.86
2841 3566 7.069331 CCTTGGCCAACATTATAATAACCTGAA 59.931 37.037 16.05 0.00 0.00 3.02
2842 3567 7.581213 TGGCCAACATTATAATAACCTGAAG 57.419 36.000 0.61 0.00 0.00 3.02
2843 3568 7.350382 TGGCCAACATTATAATAACCTGAAGA 58.650 34.615 0.61 0.00 0.00 2.87
2844 3569 7.502226 TGGCCAACATTATAATAACCTGAAGAG 59.498 37.037 0.61 0.00 0.00 2.85
2845 3570 7.363431 GCCAACATTATAATAACCTGAAGAGC 58.637 38.462 0.00 0.00 0.00 4.09
2846 3571 7.229506 GCCAACATTATAATAACCTGAAGAGCT 59.770 37.037 0.00 0.00 0.00 4.09
2847 3572 8.562892 CCAACATTATAATAACCTGAAGAGCTG 58.437 37.037 0.00 0.00 0.00 4.24
2848 3573 9.330063 CAACATTATAATAACCTGAAGAGCTGA 57.670 33.333 0.00 0.00 0.00 4.26
2850 3575 9.499479 ACATTATAATAACCTGAAGAGCTGATG 57.501 33.333 0.00 0.00 0.00 3.07
2851 3576 9.716531 CATTATAATAACCTGAAGAGCTGATGA 57.283 33.333 0.00 0.00 0.00 2.92
2852 3577 9.941325 ATTATAATAACCTGAAGAGCTGATGAG 57.059 33.333 0.00 0.00 0.00 2.90
2853 3578 5.690464 AATAACCTGAAGAGCTGATGAGT 57.310 39.130 0.00 0.00 0.00 3.41
2854 3579 5.690464 ATAACCTGAAGAGCTGATGAGTT 57.310 39.130 0.00 0.00 0.00 3.01
2855 3580 6.798427 ATAACCTGAAGAGCTGATGAGTTA 57.202 37.500 0.00 0.00 0.00 2.24
2856 3581 4.734398 ACCTGAAGAGCTGATGAGTTAG 57.266 45.455 0.00 0.00 0.00 2.34
2857 3582 3.118811 ACCTGAAGAGCTGATGAGTTAGC 60.119 47.826 0.00 0.00 40.18 3.09
2868 3593 6.507900 GCTGATGAGTTAGCTATGTAGTTCA 58.492 40.000 0.00 0.00 36.99 3.18
2869 3594 7.151308 GCTGATGAGTTAGCTATGTAGTTCAT 58.849 38.462 0.00 0.00 40.25 2.57
2870 3595 7.655328 GCTGATGAGTTAGCTATGTAGTTCATT 59.345 37.037 0.00 0.00 37.91 2.57
2881 3606 9.804758 AGCTATGTAGTTCATTAACTTGTAGTC 57.195 33.333 0.00 0.00 43.60 2.59
2882 3607 9.804758 GCTATGTAGTTCATTAACTTGTAGTCT 57.195 33.333 0.00 0.00 43.60 3.24
3020 3851 9.331282 GGCATAATTCTAGTATTATCCCATCAC 57.669 37.037 14.24 1.09 31.35 3.06
3038 3869 4.811555 TCACGATAAGGTTTGCATATGC 57.188 40.909 21.09 21.09 42.50 3.14
3061 3892 3.009723 AGTCCATCAAAGGTGTATTGCG 58.990 45.455 0.00 0.00 0.00 4.85
3097 3928 9.729023 TTGTTGTTCTTGTTCAGTTTACATATG 57.271 29.630 0.00 0.00 0.00 1.78
3199 4505 8.690203 TTTCTCACTGATTCACCATCTAAAAA 57.310 30.769 0.00 0.00 32.34 1.94
3272 4615 6.600882 ATTCAATGTTTCAAGAATCAGGCT 57.399 33.333 0.82 0.00 0.00 4.58
3367 4711 8.749841 ATATGTGATAGCTCGAGTATTTGTTC 57.250 34.615 15.13 2.95 0.00 3.18
3391 4735 4.407296 TGAAACCACAAAGGGCACTAAAAT 59.593 37.500 0.00 0.00 43.89 1.82
3640 4996 8.075574 CACAACTTGCATGAAATAAAGACTGTA 58.924 33.333 6.60 0.00 0.00 2.74
3659 5015 4.921547 TGTAAGATAGAAGTGCTAGTGCG 58.078 43.478 0.00 0.00 43.34 5.34
3705 5061 2.299582 TGCCCATATTGGTATGCATTGC 59.700 45.455 3.54 0.46 37.06 3.56
3944 5300 2.838225 GACCTAGCCCTAGCCGCA 60.838 66.667 0.00 0.00 41.25 5.69
4194 5550 0.975135 CCATCGCTGATCCTCTCCAT 59.025 55.000 0.00 0.00 0.00 3.41
4208 5564 4.415150 CCATGGCACCGCTGGTCT 62.415 66.667 0.00 0.00 31.02 3.85
4235 5591 4.402528 CGCCGATGGGTTCCACCA 62.403 66.667 0.00 0.00 46.24 4.17
4299 5655 1.451387 CGCCATAACCCTCCACCAC 60.451 63.158 0.00 0.00 0.00 4.16
4302 5658 1.602237 CATAACCCTCCACCACGCT 59.398 57.895 0.00 0.00 0.00 5.07
4303 5659 0.744414 CATAACCCTCCACCACGCTG 60.744 60.000 0.00 0.00 0.00 5.18
4316 5672 3.503749 CGCTGCTCGTCTACTCCT 58.496 61.111 0.00 0.00 0.00 3.69
4361 5717 3.753070 GATCTGGTCGTCGCGGTCC 62.753 68.421 6.13 4.53 0.00 4.46
4363 5719 4.351938 CTGGTCGTCGCGGTCCAA 62.352 66.667 6.13 0.00 33.30 3.53
4384 5740 2.543067 GAATCCGGCTGTTCCTGGCT 62.543 60.000 0.00 0.00 0.00 4.75
4390 5746 2.046892 CTGTTCCTGGCTGGTCCG 60.047 66.667 10.44 0.00 37.80 4.79
4394 5750 2.642254 TTCCTGGCTGGTCCGTACG 61.642 63.158 8.69 8.69 37.80 3.67
4395 5751 3.379445 CCTGGCTGGTCCGTACGT 61.379 66.667 15.21 0.00 37.80 3.57
4455 5811 2.132352 CGGCCCTACCCTGGTACTC 61.132 68.421 0.00 0.00 33.26 2.59
4495 5851 4.899239 GGCCATCCGTCGCTCCAG 62.899 72.222 0.00 0.00 0.00 3.86
4497 5853 4.899239 CCATCCGTCGCTCCAGCC 62.899 72.222 0.00 0.00 37.91 4.85
5251 9891 2.425668 TCGACTTCGCCACTTATGATGA 59.574 45.455 0.00 0.00 39.60 2.92
5263 9903 2.454336 TATGATGACACGGAGGACCT 57.546 50.000 0.00 0.00 0.00 3.85
5352 9992 1.341156 GCTGGCATCCTACCACCTCT 61.341 60.000 0.00 0.00 32.49 3.69
5378 10018 2.025416 TGCAGCCCAAACATGGTACTAT 60.025 45.455 0.00 0.00 0.00 2.12
5526 10166 0.317479 GGTGCAAGACTACACCGACT 59.683 55.000 10.85 0.00 46.32 4.18
5831 10471 4.699522 GTTCCGCCGGCTCACCTT 62.700 66.667 26.68 0.00 0.00 3.50
6076 10716 1.372128 CGAGCTTTTTGTGCAGGCC 60.372 57.895 0.00 0.00 0.00 5.19
6129 10769 2.757077 GCCTAGTGGGTTGTGGCT 59.243 61.111 0.00 0.00 40.36 4.75
6212 10853 9.369672 AGTCAAGTAAACCTCTCTATATAAGGG 57.630 37.037 4.37 0.00 34.31 3.95
6238 10879 8.811017 GGAGGAGATGTATCAATCTAATCAAGA 58.189 37.037 0.00 0.00 37.03 3.02
6329 10970 1.760086 CCATCTCCCTCTCAGCCGT 60.760 63.158 0.00 0.00 0.00 5.68
6453 11094 4.024670 CCCTAGTTTCTACCACTAGCAGT 58.975 47.826 2.12 0.00 41.71 4.40
6456 11097 6.100668 CCTAGTTTCTACCACTAGCAGTTTC 58.899 44.000 2.12 0.00 41.71 2.78
6477 11118 8.749354 AGTTTCTAGTTGTGAGGAAATTTTTGT 58.251 29.630 0.00 0.00 31.74 2.83
6506 11183 3.055819 TCCACCTTATGTTCACAGAGAGC 60.056 47.826 0.00 0.00 0.00 4.09
6544 11221 4.543084 GCAAATCTGCGCTCGGGC 62.543 66.667 9.73 0.00 39.20 6.13
6548 11225 1.926511 AAATCTGCGCTCGGGCAAAG 61.927 55.000 8.62 3.52 43.39 2.77
6554 11231 2.439156 GCTCGGGCAAAGGCTCAT 60.439 61.111 0.00 0.00 42.15 2.90
6555 11232 2.048603 GCTCGGGCAAAGGCTCATT 61.049 57.895 0.00 0.00 42.15 2.57
6558 11235 0.965363 TCGGGCAAAGGCTCATTTCC 60.965 55.000 0.00 0.00 42.15 3.13
6575 11252 7.470009 GCTCATTTCCTTTTCCTTTTCACACTA 60.470 37.037 0.00 0.00 0.00 2.74
6586 11263 7.724305 TCCTTTTCACACTAACACTGTAATC 57.276 36.000 0.00 0.00 0.00 1.75
6604 11284 9.003658 ACTGTAATCGTTGATGATTCTTTTTCT 57.996 29.630 1.89 0.00 39.27 2.52
6610 11290 8.786937 TCGTTGATGATTCTTTTTCTTCAAAG 57.213 30.769 4.27 6.35 38.33 2.77
6617 11297 8.945481 TGATTCTTTTTCTTCAAAGCAATTCA 57.055 26.923 0.00 0.00 34.26 2.57
6676 11356 9.743057 TCCACTTGATAAACAATGTTTTTAGTG 57.257 29.630 16.99 20.03 37.88 2.74
6677 11357 9.528018 CCACTTGATAAACAATGTTTTTAGTGT 57.472 29.630 16.99 8.32 37.88 3.55
6685 11365 8.628882 AAACAATGTTTTTAGTGTAGTTCTGC 57.371 30.769 5.41 0.00 0.00 4.26
6686 11366 7.568199 ACAATGTTTTTAGTGTAGTTCTGCT 57.432 32.000 0.00 0.00 0.00 4.24
6687 11367 7.417612 ACAATGTTTTTAGTGTAGTTCTGCTG 58.582 34.615 0.00 0.00 0.00 4.41
6688 11368 7.282224 ACAATGTTTTTAGTGTAGTTCTGCTGA 59.718 33.333 0.00 0.00 0.00 4.26
6690 11370 6.346096 TGTTTTTAGTGTAGTTCTGCTGACT 58.654 36.000 0.00 0.00 0.00 3.41
6691 11371 6.257849 TGTTTTTAGTGTAGTTCTGCTGACTG 59.742 38.462 0.00 0.00 0.00 3.51
6692 11372 4.521130 TTAGTGTAGTTCTGCTGACTGG 57.479 45.455 0.00 0.00 0.00 4.00
6708 11388 1.421268 ACTGGGTCACAATGAGAGCAA 59.579 47.619 11.55 0.00 35.30 3.91
6728 11408 7.281100 AGAGCAAAGTTATCTTATACTGTTGCC 59.719 37.037 0.00 0.00 38.13 4.52
6788 11470 4.661222 TGAAATTTGAGTAGCACCCATGA 58.339 39.130 0.00 0.00 0.00 3.07
6818 11500 5.116180 TGAAACAATATACCTTGCTCGAGG 58.884 41.667 15.58 0.00 42.75 4.63
6822 11504 0.263765 TATACCTTGCTCGAGGGGGT 59.736 55.000 15.58 3.08 41.31 4.95
6823 11505 1.338136 ATACCTTGCTCGAGGGGGTG 61.338 60.000 15.58 0.00 41.31 4.61
6824 11506 4.101448 CCTTGCTCGAGGGGGTGG 62.101 72.222 15.58 0.00 32.94 4.61
6825 11507 4.101448 CTTGCTCGAGGGGGTGGG 62.101 72.222 15.58 0.00 0.00 4.61
6850 11532 2.441750 GGGGAATCTGGGTGCACTTATA 59.558 50.000 17.98 0.66 0.00 0.98
6851 11533 3.074538 GGGGAATCTGGGTGCACTTATAT 59.925 47.826 17.98 3.21 0.00 0.86
6852 11534 4.288626 GGGGAATCTGGGTGCACTTATATA 59.711 45.833 17.98 0.00 0.00 0.86
6853 11535 5.044846 GGGGAATCTGGGTGCACTTATATAT 60.045 44.000 17.98 0.65 0.00 0.86
6854 11536 6.116126 GGGAATCTGGGTGCACTTATATATC 58.884 44.000 17.98 7.50 0.00 1.63
6865 11547 8.930760 GGTGCACTTATATATCTTCATCAGAAC 58.069 37.037 17.98 0.00 34.16 3.01
6893 11575 4.122143 TCAGTGATGATGTGCATACGAA 57.878 40.909 0.00 0.00 37.34 3.85
6898 11580 7.013529 CAGTGATGATGTGCATACGAATTATG 58.986 38.462 0.00 0.00 40.74 1.90
6901 11583 7.857389 GTGATGATGTGCATACGAATTATGTTT 59.143 33.333 0.00 0.00 40.02 2.83
7056 11742 6.549912 TTATCTGATAAGATGTGTGCATGC 57.450 37.500 11.82 11.82 35.07 4.06
7146 11832 4.503741 GCTTTTGCTGTAATCTGAACCA 57.496 40.909 0.00 0.00 43.35 3.67
7161 11847 1.130561 GAACCATTTGTGTAGCTCGGC 59.869 52.381 0.00 0.00 0.00 5.54
7197 11884 5.278463 GCGGATTGCTTATGATTTGGTACAT 60.278 40.000 0.00 0.00 38.63 2.29
7299 11987 6.203530 TGCTATGAATAAAGAATCTTCAGCCG 59.796 38.462 0.00 0.00 32.82 5.52
7309 11997 0.248907 TCTTCAGCCGCACGTATAGC 60.249 55.000 0.00 0.00 0.00 2.97
7328 12016 1.541588 GCTGCACTTAAAACTCCAGGG 59.458 52.381 0.00 0.00 0.00 4.45
7391 12079 0.740737 GCAAACAGTCACCTGCAAGT 59.259 50.000 0.00 0.00 42.81 3.16
7495 12183 6.532657 TGCATTACGTACTAAAAGTAGAAGCC 59.467 38.462 0.00 0.00 30.12 4.35
7526 12214 4.485163 GAAAATGTTCAGCATAACCGCTT 58.515 39.130 0.00 0.00 41.38 4.68
7542 12232 3.058224 ACCGCTTACTCAAGTTTCAATGC 60.058 43.478 0.00 0.00 34.00 3.56
7549 12239 5.186996 ACTCAAGTTTCAATGCGTTCATT 57.813 34.783 0.00 0.00 43.31 2.57
7598 12289 7.227314 TGACTATACACATGCATCTTCCAAATC 59.773 37.037 0.00 0.00 0.00 2.17
7601 12292 3.119245 ACACATGCATCTTCCAAATCTGC 60.119 43.478 0.00 0.00 0.00 4.26
7614 12305 6.899393 TCCAAATCTGCACTCATTTTTAGT 57.101 33.333 0.00 0.00 0.00 2.24
7633 12324 9.710979 TTTTTAGTCGAGTACAAATGAAACAAG 57.289 29.630 7.37 0.00 0.00 3.16
7634 12325 8.651391 TTTAGTCGAGTACAAATGAAACAAGA 57.349 30.769 0.00 0.00 0.00 3.02
7635 12326 8.827177 TTAGTCGAGTACAAATGAAACAAGAT 57.173 30.769 0.00 0.00 0.00 2.40
7636 12327 9.917129 TTAGTCGAGTACAAATGAAACAAGATA 57.083 29.630 0.00 0.00 0.00 1.98
7637 12328 8.827177 AGTCGAGTACAAATGAAACAAGATAA 57.173 30.769 0.00 0.00 0.00 1.75
7638 12329 9.268268 AGTCGAGTACAAATGAAACAAGATAAA 57.732 29.630 0.00 0.00 0.00 1.40
7792 12485 8.764524 AACTCTGTATCTATGTTCTTTCACAC 57.235 34.615 0.00 0.00 0.00 3.82
7964 12662 9.899226 AATACAGCAAAAAGAAGTTCAGAATAC 57.101 29.630 5.50 0.00 0.00 1.89
7965 12663 6.739112 ACAGCAAAAAGAAGTTCAGAATACC 58.261 36.000 5.50 0.00 0.00 2.73
7966 12664 6.321181 ACAGCAAAAAGAAGTTCAGAATACCA 59.679 34.615 5.50 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 6.209774 TCAGAATATCTTGGAACTTCCCCTA 58.790 40.000 5.30 0.00 35.03 3.53
35 37 9.050601 CCACTATTCAGAATATCTTGGAACTTC 57.949 37.037 15.03 0.00 0.00 3.01
52 54 9.276590 CAGATATGCAAGATAAACCACTATTCA 57.723 33.333 0.00 0.00 0.00 2.57
55 57 7.456725 AGCAGATATGCAAGATAAACCACTAT 58.543 34.615 15.82 0.00 37.25 2.12
59 61 5.532406 GGAAGCAGATATGCAAGATAAACCA 59.468 40.000 15.82 0.00 37.25 3.67
61 63 5.767168 AGGGAAGCAGATATGCAAGATAAAC 59.233 40.000 15.82 0.00 37.25 2.01
62 64 5.766670 CAGGGAAGCAGATATGCAAGATAAA 59.233 40.000 15.82 0.00 37.25 1.40
93 97 5.173664 CGGAGATTATCAAGATATGCAGCA 58.826 41.667 0.00 0.00 0.00 4.41
94 98 4.033817 GCGGAGATTATCAAGATATGCAGC 59.966 45.833 0.00 0.00 0.00 5.25
109 117 1.333636 CCCCTCAGACAGCGGAGATT 61.334 60.000 0.00 0.00 38.43 2.40
114 122 4.463879 CTGCCCCTCAGACAGCGG 62.464 72.222 0.00 0.00 45.72 5.52
150 158 4.610333 TCTCACTCCTCTATGTGCCTTAA 58.390 43.478 0.00 0.00 34.49 1.85
151 159 4.251103 TCTCACTCCTCTATGTGCCTTA 57.749 45.455 0.00 0.00 34.49 2.69
185 193 4.163458 AGCAATCTGGTTCGAGGGTTATTA 59.837 41.667 0.00 0.00 0.00 0.98
191 353 1.373570 GAAGCAATCTGGTTCGAGGG 58.626 55.000 3.11 0.00 43.62 4.30
253 417 3.058160 CTTCGTGCCCAAGCCTGG 61.058 66.667 0.00 0.00 43.10 4.45
257 421 0.733909 GAAATGCTTCGTGCCCAAGC 60.734 55.000 4.78 4.78 45.59 4.01
258 422 0.109132 GGAAATGCTTCGTGCCCAAG 60.109 55.000 1.30 0.00 42.00 3.61
259 423 0.825425 TGGAAATGCTTCGTGCCCAA 60.825 50.000 1.30 0.00 42.00 4.12
260 424 0.825425 TTGGAAATGCTTCGTGCCCA 60.825 50.000 1.30 0.00 42.00 5.36
261 425 0.388520 GTTGGAAATGCTTCGTGCCC 60.389 55.000 1.30 0.00 42.00 5.36
262 426 0.598065 AGTTGGAAATGCTTCGTGCC 59.402 50.000 1.30 0.00 42.00 5.01
263 427 1.401539 GGAGTTGGAAATGCTTCGTGC 60.402 52.381 0.00 0.00 43.25 5.34
264 428 1.135972 CGGAGTTGGAAATGCTTCGTG 60.136 52.381 0.00 0.00 31.77 4.35
265 429 1.156736 CGGAGTTGGAAATGCTTCGT 58.843 50.000 0.00 0.00 31.77 3.85
266 430 1.156736 ACGGAGTTGGAAATGCTTCG 58.843 50.000 0.00 0.00 37.78 3.79
333 501 4.796495 GGGGATCACCACGCCACC 62.796 72.222 9.87 0.00 42.91 4.61
470 666 3.330998 GGGAAGAGGGAGGAAGAAAGAAA 59.669 47.826 0.00 0.00 0.00 2.52
471 667 2.913617 GGGAAGAGGGAGGAAGAAAGAA 59.086 50.000 0.00 0.00 0.00 2.52
472 668 2.552367 GGGAAGAGGGAGGAAGAAAGA 58.448 52.381 0.00 0.00 0.00 2.52
473 669 1.562008 GGGGAAGAGGGAGGAAGAAAG 59.438 57.143 0.00 0.00 0.00 2.62
538 739 2.188817 GTCCTCCTCCATGTTGTAGGT 58.811 52.381 0.00 0.00 0.00 3.08
545 746 0.339859 TGGCTAGTCCTCCTCCATGT 59.660 55.000 0.00 0.00 35.26 3.21
546 747 1.047002 CTGGCTAGTCCTCCTCCATG 58.953 60.000 0.00 0.00 35.26 3.66
547 748 0.762461 GCTGGCTAGTCCTCCTCCAT 60.762 60.000 0.00 0.00 35.26 3.41
548 749 1.381872 GCTGGCTAGTCCTCCTCCA 60.382 63.158 0.00 0.00 35.26 3.86
553 778 1.395826 ATGGTCGCTGGCTAGTCCTC 61.396 60.000 0.00 0.00 35.26 3.71
626 858 3.941483 GTGTTTCTCGTCATGGATTCCAT 59.059 43.478 12.62 12.62 46.37 3.41
627 859 3.244387 TGTGTTTCTCGTCATGGATTCCA 60.244 43.478 8.08 8.08 38.19 3.53
628 860 3.334691 TGTGTTTCTCGTCATGGATTCC 58.665 45.455 0.00 0.00 0.00 3.01
629 861 4.901814 CATGTGTTTCTCGTCATGGATTC 58.098 43.478 0.00 0.00 35.47 2.52
630 862 4.952262 CATGTGTTTCTCGTCATGGATT 57.048 40.909 0.00 0.00 35.47 3.01
652 884 4.003519 AGTTTATTTCGTGCATCTTCGC 57.996 40.909 0.00 0.00 0.00 4.70
679 911 3.242867 TCAAGCAAAGAGAAGAGGAGGA 58.757 45.455 0.00 0.00 0.00 3.71
680 912 3.692257 TCAAGCAAAGAGAAGAGGAGG 57.308 47.619 0.00 0.00 0.00 4.30
681 913 4.640364 ACTTCAAGCAAAGAGAAGAGGAG 58.360 43.478 8.25 0.00 40.85 3.69
682 914 4.696479 ACTTCAAGCAAAGAGAAGAGGA 57.304 40.909 8.25 0.00 40.85 3.71
683 915 6.652481 TGAATACTTCAAGCAAAGAGAAGAGG 59.348 38.462 8.25 0.00 40.85 3.69
684 916 7.664082 TGAATACTTCAAGCAAAGAGAAGAG 57.336 36.000 8.25 0.00 40.85 2.85
694 926 8.456471 CAGAATCTGAATTGAATACTTCAAGCA 58.544 33.333 3.77 7.70 42.30 3.91
695 927 8.671921 TCAGAATCTGAATTGAATACTTCAAGC 58.328 33.333 10.99 4.15 42.87 4.01
696 928 9.985318 GTCAGAATCTGAATTGAATACTTCAAG 57.015 33.333 15.28 0.00 42.87 3.02
697 929 8.659491 CGTCAGAATCTGAATTGAATACTTCAA 58.341 33.333 15.28 4.90 43.39 2.69
698 930 8.034804 TCGTCAGAATCTGAATTGAATACTTCA 58.965 33.333 15.28 0.00 42.46 3.02
699 931 8.412608 TCGTCAGAATCTGAATTGAATACTTC 57.587 34.615 15.28 0.00 42.46 3.01
700 932 7.493971 CCTCGTCAGAATCTGAATTGAATACTT 59.506 37.037 15.28 0.00 42.46 2.24
701 933 6.983307 CCTCGTCAGAATCTGAATTGAATACT 59.017 38.462 15.28 0.00 42.46 2.12
702 934 6.980978 TCCTCGTCAGAATCTGAATTGAATAC 59.019 38.462 15.28 0.00 42.46 1.89
703 935 7.112452 TCCTCGTCAGAATCTGAATTGAATA 57.888 36.000 15.28 2.28 42.46 1.75
704 936 5.982356 TCCTCGTCAGAATCTGAATTGAAT 58.018 37.500 15.28 0.00 42.46 2.57
705 937 5.405935 TCCTCGTCAGAATCTGAATTGAA 57.594 39.130 15.28 0.00 42.46 2.69
706 938 4.142071 CCTCCTCGTCAGAATCTGAATTGA 60.142 45.833 15.28 11.87 42.46 2.57
707 939 4.118410 CCTCCTCGTCAGAATCTGAATTG 58.882 47.826 15.28 8.16 42.46 2.32
708 940 3.772025 ACCTCCTCGTCAGAATCTGAATT 59.228 43.478 15.28 0.00 42.46 2.17
709 941 3.370104 ACCTCCTCGTCAGAATCTGAAT 58.630 45.455 15.28 0.00 42.46 2.57
710 942 2.755655 GACCTCCTCGTCAGAATCTGAA 59.244 50.000 15.28 0.00 42.46 3.02
711 943 2.025793 AGACCTCCTCGTCAGAATCTGA 60.026 50.000 9.18 9.18 38.25 3.27
712 944 2.374184 AGACCTCCTCGTCAGAATCTG 58.626 52.381 3.38 3.38 35.07 2.90
713 945 2.818751 AGACCTCCTCGTCAGAATCT 57.181 50.000 0.00 0.00 35.07 2.40
714 946 3.547746 ACTAGACCTCCTCGTCAGAATC 58.452 50.000 0.00 0.00 35.07 2.52
715 947 3.547746 GACTAGACCTCCTCGTCAGAAT 58.452 50.000 0.00 0.00 37.49 2.40
716 948 2.677325 CGACTAGACCTCCTCGTCAGAA 60.677 54.545 0.00 0.00 37.42 3.02
717 949 1.134759 CGACTAGACCTCCTCGTCAGA 60.135 57.143 0.00 0.00 37.42 3.27
718 950 1.292061 CGACTAGACCTCCTCGTCAG 58.708 60.000 0.00 0.00 37.42 3.51
719 951 0.107800 CCGACTAGACCTCCTCGTCA 60.108 60.000 0.00 0.00 37.42 4.35
720 952 1.438562 GCCGACTAGACCTCCTCGTC 61.439 65.000 0.00 0.00 35.07 4.20
721 953 1.451747 GCCGACTAGACCTCCTCGT 60.452 63.158 0.00 0.00 0.00 4.18
722 954 2.535788 CGCCGACTAGACCTCCTCG 61.536 68.421 0.00 0.00 0.00 4.63
731 963 2.202756 GGTTGCCTCGCCGACTAG 60.203 66.667 0.00 0.00 0.00 2.57
755 987 4.927782 TGTTTCGTGCTGGCGGCT 62.928 61.111 20.66 0.00 42.39 5.52
756 988 4.683334 GTGTTTCGTGCTGGCGGC 62.683 66.667 12.43 12.43 42.22 6.53
757 989 4.025401 GGTGTTTCGTGCTGGCGG 62.025 66.667 0.00 0.00 0.00 6.13
758 990 4.368808 CGGTGTTTCGTGCTGGCG 62.369 66.667 0.00 0.00 0.00 5.69
759 991 4.025401 CCGGTGTTTCGTGCTGGC 62.025 66.667 0.00 0.00 0.00 4.85
760 992 4.025401 GCCGGTGTTTCGTGCTGG 62.025 66.667 1.90 0.00 0.00 4.85
761 993 3.240606 CTGCCGGTGTTTCGTGCTG 62.241 63.158 1.90 0.00 0.00 4.41
762 994 2.372040 TACTGCCGGTGTTTCGTGCT 62.372 55.000 1.90 0.00 0.00 4.40
772 1004 4.087892 CTGCCTGCTACTGCCGGT 62.088 66.667 1.90 0.00 44.12 5.28
779 1012 1.148759 GCGTTAGCTCTGCCTGCTAC 61.149 60.000 0.00 0.00 41.95 3.58
780 1013 1.141881 GCGTTAGCTCTGCCTGCTA 59.858 57.895 0.00 0.00 41.46 3.49
781 1014 2.125350 GCGTTAGCTCTGCCTGCT 60.125 61.111 0.00 0.00 43.79 4.24
788 1021 1.202580 GGTGATGATGGCGTTAGCTCT 60.203 52.381 0.00 0.00 44.37 4.09
803 1037 4.693566 CGTATATTTATGTTGGCCGGTGAT 59.306 41.667 1.90 0.00 0.00 3.06
826 1060 1.138247 CGCCGTGGTGGTAGTACTC 59.862 63.158 0.00 0.00 41.21 2.59
827 1061 0.895100 TTCGCCGTGGTGGTAGTACT 60.895 55.000 0.00 0.00 41.21 2.73
828 1062 0.733909 GTTCGCCGTGGTGGTAGTAC 60.734 60.000 0.00 0.00 41.21 2.73
843 1077 0.584396 TAGTGGCAGCAAAACGTTCG 59.416 50.000 0.00 0.00 0.00 3.95
844 1078 1.334689 GGTAGTGGCAGCAAAACGTTC 60.335 52.381 0.00 0.00 0.00 3.95
858 1092 2.379972 ACTGCTAGTAGCTGGGTAGTG 58.620 52.381 26.80 9.51 43.38 2.74
864 1105 0.738975 TGCGTACTGCTAGTAGCTGG 59.261 55.000 26.80 19.32 43.38 4.85
866 1111 0.377554 CGTGCGTACTGCTAGTAGCT 59.622 55.000 22.34 6.43 46.63 3.32
871 1116 2.497092 CGTGCGTGCGTACTGCTAG 61.497 63.158 17.49 10.04 46.63 3.42
872 1117 1.910216 TACGTGCGTGCGTACTGCTA 61.910 55.000 17.49 5.67 46.63 3.49
875 1120 1.441515 ACTACGTGCGTGCGTACTG 60.442 57.895 7.55 7.06 45.06 2.74
877 1122 3.058351 CACTACGTGCGTGCGTAC 58.942 61.111 7.55 2.83 45.06 3.67
895 1140 1.802715 CAGATTGCTTTTGCCGCCG 60.803 57.895 0.00 0.00 46.87 6.46
912 1158 0.184933 CTCCACCAACCCCTGTTTCA 59.815 55.000 0.00 0.00 30.42 2.69
913 1159 0.539669 CCTCCACCAACCCCTGTTTC 60.540 60.000 0.00 0.00 30.42 2.78
916 1162 3.580319 GCCTCCACCAACCCCTGT 61.580 66.667 0.00 0.00 0.00 4.00
917 1163 4.722700 CGCCTCCACCAACCCCTG 62.723 72.222 0.00 0.00 0.00 4.45
1035 1287 2.121963 AGCACCACCTCCCTCCAA 60.122 61.111 0.00 0.00 0.00 3.53
1269 1521 1.727723 CCTAGAGAAGCGCGCGATC 60.728 63.158 37.18 28.95 0.00 3.69
1324 1578 4.129380 CACGATGATTGATTAGGGAAGCA 58.871 43.478 0.00 0.00 0.00 3.91
1326 1580 4.708177 ACCACGATGATTGATTAGGGAAG 58.292 43.478 0.00 0.00 0.00 3.46
1344 1598 8.311109 ACAATTCTGGGTTATCAAATTTACCAC 58.689 33.333 9.51 1.43 32.20 4.16
1376 1630 1.809619 GACCTGACTGCGCGCAATA 60.810 57.895 35.50 21.68 0.00 1.90
1422 1676 2.415491 GCCGCCAAATGGAAGTAGAAAC 60.415 50.000 2.98 0.00 37.39 2.78
1450 1705 4.189514 GCTGAACACACGCGAAAC 57.810 55.556 15.93 0.00 0.00 2.78
1470 1725 0.036952 CATAGCATGGTAGAGCCGGG 60.037 60.000 10.82 0.00 41.21 5.73
1472 1727 0.033920 TGCATAGCATGGTAGAGCCG 59.966 55.000 21.95 6.68 34.73 5.52
1490 1745 7.626452 GCTTAGTACCAAGCCAAAATTAGAGTG 60.626 40.741 14.29 0.00 44.22 3.51
1493 1748 6.753107 GCTTAGTACCAAGCCAAAATTAGA 57.247 37.500 14.29 0.00 44.22 2.10
1542 1800 6.129414 TGGACTGCCCTAAAAATTACACTA 57.871 37.500 0.00 0.00 35.38 2.74
1546 1804 3.130516 GGCTGGACTGCCCTAAAAATTAC 59.869 47.826 8.85 0.00 46.82 1.89
1577 1843 3.455619 AGCTTCATTTTAACGTGCGAG 57.544 42.857 0.00 0.00 0.00 5.03
1579 1845 5.320723 TGATTAGCTTCATTTTAACGTGCG 58.679 37.500 0.00 0.00 0.00 5.34
1599 1865 2.986306 GCACGCAGCCAGCTTTGAT 61.986 57.895 0.00 0.00 42.61 2.57
1610 1876 1.569708 ACAAAAATGTTGGCACGCAG 58.430 45.000 0.00 0.00 0.00 5.18
1618 1884 8.373992 CAATTTCCAAGCAAAACAAAAATGTTG 58.626 29.630 0.00 0.00 31.64 3.33
1634 2237 9.173939 GAGACGATTATTATTGCAATTTCCAAG 57.826 33.333 18.75 7.00 0.00 3.61
1695 2349 1.175983 GGTCGTGGGGCACAAAATGA 61.176 55.000 0.00 0.00 33.40 2.57
1727 2381 5.105716 GCCCTTCTTTCTTTCTTGGGAATAC 60.106 44.000 0.00 0.00 35.40 1.89
1729 2383 3.834813 GCCCTTCTTTCTTTCTTGGGAAT 59.165 43.478 0.00 0.00 35.40 3.01
1736 2390 3.580022 CCAATTGGCCCTTCTTTCTTTCT 59.420 43.478 12.53 0.00 0.00 2.52
1868 2526 6.801539 TCTCGTCATTCTAGCAACATTTTT 57.198 33.333 0.00 0.00 0.00 1.94
1869 2527 6.801539 TTCTCGTCATTCTAGCAACATTTT 57.198 33.333 0.00 0.00 0.00 1.82
1870 2528 6.621596 GCTTTCTCGTCATTCTAGCAACATTT 60.622 38.462 0.00 0.00 0.00 2.32
1871 2529 5.163814 GCTTTCTCGTCATTCTAGCAACATT 60.164 40.000 0.00 0.00 0.00 2.71
1872 2530 4.331168 GCTTTCTCGTCATTCTAGCAACAT 59.669 41.667 0.00 0.00 0.00 2.71
1873 2531 3.679980 GCTTTCTCGTCATTCTAGCAACA 59.320 43.478 0.00 0.00 0.00 3.33
1874 2532 3.062774 GGCTTTCTCGTCATTCTAGCAAC 59.937 47.826 0.00 0.00 0.00 4.17
1875 2533 3.262420 GGCTTTCTCGTCATTCTAGCAA 58.738 45.455 0.00 0.00 0.00 3.91
1876 2534 2.233676 TGGCTTTCTCGTCATTCTAGCA 59.766 45.455 0.00 0.00 0.00 3.49
1877 2535 2.863137 CTGGCTTTCTCGTCATTCTAGC 59.137 50.000 0.00 0.00 0.00 3.42
1878 2536 3.131223 TCCTGGCTTTCTCGTCATTCTAG 59.869 47.826 0.00 0.00 0.00 2.43
1879 2537 3.096852 TCCTGGCTTTCTCGTCATTCTA 58.903 45.455 0.00 0.00 0.00 2.10
1880 2538 1.902508 TCCTGGCTTTCTCGTCATTCT 59.097 47.619 0.00 0.00 0.00 2.40
1881 2539 2.386661 TCCTGGCTTTCTCGTCATTC 57.613 50.000 0.00 0.00 0.00 2.67
1882 2540 3.452627 ACTATCCTGGCTTTCTCGTCATT 59.547 43.478 0.00 0.00 0.00 2.57
1883 2541 3.034635 ACTATCCTGGCTTTCTCGTCAT 58.965 45.455 0.00 0.00 0.00 3.06
1884 2542 2.457598 ACTATCCTGGCTTTCTCGTCA 58.542 47.619 0.00 0.00 0.00 4.35
1885 2543 4.857509 ATACTATCCTGGCTTTCTCGTC 57.142 45.455 0.00 0.00 0.00 4.20
1886 2544 6.919775 ATTATACTATCCTGGCTTTCTCGT 57.080 37.500 0.00 0.00 0.00 4.18
1887 2545 6.967767 CGTATTATACTATCCTGGCTTTCTCG 59.032 42.308 0.69 0.00 0.00 4.04
1888 2546 7.093858 ACCGTATTATACTATCCTGGCTTTCTC 60.094 40.741 0.69 0.00 0.00 2.87
1889 2547 6.724905 ACCGTATTATACTATCCTGGCTTTCT 59.275 38.462 0.69 0.00 0.00 2.52
1890 2548 6.932947 ACCGTATTATACTATCCTGGCTTTC 58.067 40.000 0.69 0.00 0.00 2.62
1891 2549 6.930068 ACCGTATTATACTATCCTGGCTTT 57.070 37.500 0.69 0.00 0.00 3.51
1892 2550 6.295688 CCAACCGTATTATACTATCCTGGCTT 60.296 42.308 0.69 0.00 0.00 4.35
1893 2551 5.187186 CCAACCGTATTATACTATCCTGGCT 59.813 44.000 0.69 0.00 0.00 4.75
1911 2569 8.040716 AGATTATTTAAGACTGAAACCAACCG 57.959 34.615 0.00 0.00 0.00 4.44
1976 2635 4.801891 TGTTCAGAATTTCAGATGCTTGC 58.198 39.130 0.00 0.00 0.00 4.01
2112 2772 2.892784 ACATCGGCTTACTAAGGAGC 57.107 50.000 0.00 0.00 38.17 4.70
2122 2782 4.689612 ACCATAGTTCATACATCGGCTT 57.310 40.909 0.00 0.00 0.00 4.35
2141 2801 5.106157 CCGGCTCCATTATCATAATGAAACC 60.106 44.000 17.68 13.43 0.00 3.27
2153 2813 1.484444 GCTCTCCCCGGCTCCATTAT 61.484 60.000 0.00 0.00 0.00 1.28
2201 2861 7.113404 CAGTGGAAATTGATTACAAAACGTGAG 59.887 37.037 0.00 0.00 39.54 3.51
2227 2887 1.275573 GGGGAGCCGGTGTATAGATTC 59.724 57.143 1.90 0.00 0.00 2.52
2343 3031 0.744414 CGACGGCCAACTCATCCATT 60.744 55.000 2.24 0.00 0.00 3.16
2451 3175 3.155093 AGCATCGCATTTTAAGCTTGG 57.845 42.857 9.86 0.00 0.00 3.61
2515 3239 8.729756 CACAGGATTTCACAAATATGAACACTA 58.270 33.333 0.00 0.00 38.31 2.74
2580 3305 7.777440 TGTAAGTATCCCAATCAAATGCACATA 59.223 33.333 0.00 0.00 0.00 2.29
2587 3312 6.833933 GGACCTTGTAAGTATCCCAATCAAAT 59.166 38.462 2.30 0.00 0.00 2.32
2599 3324 3.071892 CCTTGGTGTGGACCTTGTAAGTA 59.928 47.826 0.00 0.00 43.58 2.24
2739 3464 5.051816 CAGTCGGAACTTAACTGTGGTTTA 58.948 41.667 0.00 0.00 36.50 2.01
2740 3465 3.875134 CAGTCGGAACTTAACTGTGGTTT 59.125 43.478 0.00 0.00 36.50 3.27
2741 3466 3.463944 CAGTCGGAACTTAACTGTGGTT 58.536 45.455 0.00 0.00 36.50 3.67
2742 3467 2.805657 GCAGTCGGAACTTAACTGTGGT 60.806 50.000 3.94 0.00 41.90 4.16
2743 3468 1.798813 GCAGTCGGAACTTAACTGTGG 59.201 52.381 3.94 0.00 41.90 4.17
2744 3469 1.455786 CGCAGTCGGAACTTAACTGTG 59.544 52.381 3.94 2.70 42.88 3.66
2745 3470 1.779569 CGCAGTCGGAACTTAACTGT 58.220 50.000 3.94 0.00 41.90 3.55
2757 3482 1.577328 ATCAAGGTTTGCCGCAGTCG 61.577 55.000 0.00 0.00 40.50 4.18
2758 3483 1.448985 TATCAAGGTTTGCCGCAGTC 58.551 50.000 0.00 0.00 40.50 3.51
2759 3484 1.539827 GTTATCAAGGTTTGCCGCAGT 59.460 47.619 0.00 0.00 40.50 4.40
2760 3485 1.135402 GGTTATCAAGGTTTGCCGCAG 60.135 52.381 0.00 0.00 40.50 5.18
2761 3486 0.885196 GGTTATCAAGGTTTGCCGCA 59.115 50.000 0.00 0.00 40.50 5.69
2762 3487 1.135402 CAGGTTATCAAGGTTTGCCGC 60.135 52.381 0.00 0.00 40.50 6.53
2763 3488 2.420022 CTCAGGTTATCAAGGTTTGCCG 59.580 50.000 0.00 0.00 40.50 5.69
2764 3489 2.755103 CCTCAGGTTATCAAGGTTTGCC 59.245 50.000 0.00 0.00 0.00 4.52
2765 3490 3.686016 TCCTCAGGTTATCAAGGTTTGC 58.314 45.455 0.00 0.00 0.00 3.68
2766 3491 3.691609 GCTCCTCAGGTTATCAAGGTTTG 59.308 47.826 0.00 0.00 0.00 2.93
2767 3492 3.589288 AGCTCCTCAGGTTATCAAGGTTT 59.411 43.478 0.00 0.00 0.00 3.27
2768 3493 3.054802 CAGCTCCTCAGGTTATCAAGGTT 60.055 47.826 0.00 0.00 0.00 3.50
2769 3494 2.503356 CAGCTCCTCAGGTTATCAAGGT 59.497 50.000 0.00 0.00 0.00 3.50
2770 3495 2.768527 TCAGCTCCTCAGGTTATCAAGG 59.231 50.000 0.00 0.00 0.00 3.61
2771 3496 4.100653 TCATCAGCTCCTCAGGTTATCAAG 59.899 45.833 0.00 0.00 0.00 3.02
2772 3497 4.033009 TCATCAGCTCCTCAGGTTATCAA 58.967 43.478 0.00 0.00 0.00 2.57
2773 3498 3.640498 CTCATCAGCTCCTCAGGTTATCA 59.360 47.826 0.00 0.00 0.00 2.15
2774 3499 3.640967 ACTCATCAGCTCCTCAGGTTATC 59.359 47.826 0.00 0.00 0.00 1.75
2775 3500 3.652055 ACTCATCAGCTCCTCAGGTTAT 58.348 45.455 0.00 0.00 0.00 1.89
2776 3501 3.107402 ACTCATCAGCTCCTCAGGTTA 57.893 47.619 0.00 0.00 0.00 2.85
2777 3502 1.949799 ACTCATCAGCTCCTCAGGTT 58.050 50.000 0.00 0.00 0.00 3.50
2778 3503 1.949799 AACTCATCAGCTCCTCAGGT 58.050 50.000 0.00 0.00 0.00 4.00
2779 3504 2.224018 GCTAACTCATCAGCTCCTCAGG 60.224 54.545 0.00 0.00 34.86 3.86
2780 3505 2.694628 AGCTAACTCATCAGCTCCTCAG 59.305 50.000 0.00 0.00 44.83 3.35
2781 3506 2.744760 AGCTAACTCATCAGCTCCTCA 58.255 47.619 0.00 0.00 44.83 3.86
2782 3507 4.280677 ACATAGCTAACTCATCAGCTCCTC 59.719 45.833 0.00 0.00 44.83 3.71
2783 3508 4.222336 ACATAGCTAACTCATCAGCTCCT 58.778 43.478 0.00 0.00 44.83 3.69
2784 3509 4.599047 ACATAGCTAACTCATCAGCTCC 57.401 45.455 0.00 0.00 44.83 4.70
2785 3510 6.325919 ACTACATAGCTAACTCATCAGCTC 57.674 41.667 0.00 0.00 44.83 4.09
2787 3512 6.507900 TGAACTACATAGCTAACTCATCAGC 58.492 40.000 0.00 0.00 38.09 4.26
2789 3514 9.967346 GTAATGAACTACATAGCTAACTCATCA 57.033 33.333 0.00 0.00 38.38 3.07
2790 3515 9.413048 GGTAATGAACTACATAGCTAACTCATC 57.587 37.037 0.00 0.00 38.38 2.92
2791 3516 9.148879 AGGTAATGAACTACATAGCTAACTCAT 57.851 33.333 0.00 0.00 38.38 2.90
2792 3517 8.534954 AGGTAATGAACTACATAGCTAACTCA 57.465 34.615 0.00 0.00 38.38 3.41
2793 3518 9.250624 CAAGGTAATGAACTACATAGCTAACTC 57.749 37.037 0.00 0.00 38.38 3.01
2794 3519 8.204836 CCAAGGTAATGAACTACATAGCTAACT 58.795 37.037 0.00 0.00 38.38 2.24
2795 3520 7.041984 GCCAAGGTAATGAACTACATAGCTAAC 60.042 40.741 0.00 0.00 38.38 2.34
2796 3521 6.990349 GCCAAGGTAATGAACTACATAGCTAA 59.010 38.462 0.00 0.00 38.38 3.09
2797 3522 6.463897 GGCCAAGGTAATGAACTACATAGCTA 60.464 42.308 0.00 0.00 38.38 3.32
2798 3523 5.368989 GCCAAGGTAATGAACTACATAGCT 58.631 41.667 0.00 0.00 38.38 3.32
2799 3524 4.515567 GGCCAAGGTAATGAACTACATAGC 59.484 45.833 0.00 0.00 38.38 2.97
2800 3525 5.680619 TGGCCAAGGTAATGAACTACATAG 58.319 41.667 0.61 0.00 38.38 2.23
2801 3526 5.702065 TGGCCAAGGTAATGAACTACATA 57.298 39.130 0.61 0.00 38.38 2.29
2802 3527 4.584638 TGGCCAAGGTAATGAACTACAT 57.415 40.909 0.61 0.00 41.45 2.29
2803 3528 4.076394 GTTGGCCAAGGTAATGAACTACA 58.924 43.478 21.21 0.00 0.00 2.74
2804 3529 4.076394 TGTTGGCCAAGGTAATGAACTAC 58.924 43.478 21.21 3.04 0.00 2.73
2805 3530 4.374689 TGTTGGCCAAGGTAATGAACTA 57.625 40.909 21.21 0.00 0.00 2.24
2806 3531 3.237268 TGTTGGCCAAGGTAATGAACT 57.763 42.857 21.21 0.00 0.00 3.01
2807 3532 4.535526 AATGTTGGCCAAGGTAATGAAC 57.464 40.909 21.21 4.74 0.00 3.18
2808 3533 7.962995 TTATAATGTTGGCCAAGGTAATGAA 57.037 32.000 21.21 5.44 0.00 2.57
2809 3534 9.647918 TTATTATAATGTTGGCCAAGGTAATGA 57.352 29.630 21.21 12.19 0.00 2.57
2810 3535 9.691362 GTTATTATAATGTTGGCCAAGGTAATG 57.309 33.333 21.21 0.00 0.00 1.90
2811 3536 8.866093 GGTTATTATAATGTTGGCCAAGGTAAT 58.134 33.333 21.21 18.69 0.00 1.89
2812 3537 8.062536 AGGTTATTATAATGTTGGCCAAGGTAA 58.937 33.333 21.21 13.41 0.00 2.85
2813 3538 7.504238 CAGGTTATTATAATGTTGGCCAAGGTA 59.496 37.037 21.21 11.72 0.00 3.08
2814 3539 6.323739 CAGGTTATTATAATGTTGGCCAAGGT 59.676 38.462 21.21 7.68 0.00 3.50
2815 3540 6.549364 TCAGGTTATTATAATGTTGGCCAAGG 59.451 38.462 21.21 0.00 0.00 3.61
2816 3541 7.581213 TCAGGTTATTATAATGTTGGCCAAG 57.419 36.000 21.21 0.64 0.00 3.61
2817 3542 7.836685 TCTTCAGGTTATTATAATGTTGGCCAA 59.163 33.333 16.05 16.05 0.00 4.52
2818 3543 7.350382 TCTTCAGGTTATTATAATGTTGGCCA 58.650 34.615 0.00 0.00 0.00 5.36
2819 3544 7.522236 GCTCTTCAGGTTATTATAATGTTGGCC 60.522 40.741 8.28 0.00 0.00 5.36
2820 3545 7.229506 AGCTCTTCAGGTTATTATAATGTTGGC 59.770 37.037 8.28 1.46 0.00 4.52
2821 3546 8.562892 CAGCTCTTCAGGTTATTATAATGTTGG 58.437 37.037 8.28 0.00 0.00 3.77
2822 3547 9.330063 TCAGCTCTTCAGGTTATTATAATGTTG 57.670 33.333 8.28 2.00 0.00 3.33
2824 3549 9.499479 CATCAGCTCTTCAGGTTATTATAATGT 57.501 33.333 8.28 0.00 0.00 2.71
2825 3550 9.716531 TCATCAGCTCTTCAGGTTATTATAATG 57.283 33.333 8.28 0.00 0.00 1.90
2826 3551 9.941325 CTCATCAGCTCTTCAGGTTATTATAAT 57.059 33.333 2.97 2.97 0.00 1.28
2827 3552 8.928448 ACTCATCAGCTCTTCAGGTTATTATAA 58.072 33.333 0.00 0.00 0.00 0.98
2828 3553 8.484214 ACTCATCAGCTCTTCAGGTTATTATA 57.516 34.615 0.00 0.00 0.00 0.98
2829 3554 7.372260 ACTCATCAGCTCTTCAGGTTATTAT 57.628 36.000 0.00 0.00 0.00 1.28
2830 3555 6.798427 ACTCATCAGCTCTTCAGGTTATTA 57.202 37.500 0.00 0.00 0.00 0.98
2831 3556 5.690464 ACTCATCAGCTCTTCAGGTTATT 57.310 39.130 0.00 0.00 0.00 1.40
2832 3557 5.690464 AACTCATCAGCTCTTCAGGTTAT 57.310 39.130 0.00 0.00 0.00 1.89
2833 3558 5.394663 GCTAACTCATCAGCTCTTCAGGTTA 60.395 44.000 0.00 0.00 34.86 2.85
2834 3559 4.622695 GCTAACTCATCAGCTCTTCAGGTT 60.623 45.833 0.00 0.00 34.86 3.50
2835 3560 3.118811 GCTAACTCATCAGCTCTTCAGGT 60.119 47.826 0.00 0.00 34.86 4.00
2836 3561 3.132646 AGCTAACTCATCAGCTCTTCAGG 59.867 47.826 0.00 0.00 44.83 3.86
2837 3562 4.389890 AGCTAACTCATCAGCTCTTCAG 57.610 45.455 0.00 0.00 44.83 3.02
2838 3563 5.362143 ACATAGCTAACTCATCAGCTCTTCA 59.638 40.000 0.00 0.00 44.83 3.02
2839 3564 5.841810 ACATAGCTAACTCATCAGCTCTTC 58.158 41.667 0.00 0.00 44.83 2.87
2840 3565 5.867903 ACATAGCTAACTCATCAGCTCTT 57.132 39.130 0.00 0.00 44.83 2.85
2841 3566 6.068010 ACTACATAGCTAACTCATCAGCTCT 58.932 40.000 0.00 0.00 44.83 4.09
2842 3567 6.325919 ACTACATAGCTAACTCATCAGCTC 57.674 41.667 0.00 0.00 44.83 4.09
2844 3569 6.507900 TGAACTACATAGCTAACTCATCAGC 58.492 40.000 0.00 0.00 38.09 4.26
2855 3580 9.804758 GACTACAAGTTAATGAACTACATAGCT 57.195 33.333 0.00 0.00 45.50 3.32
2856 3581 9.804758 AGACTACAAGTTAATGAACTACATAGC 57.195 33.333 0.00 0.00 45.50 2.97
2864 3589 9.485206 TGGTTTAGAGACTACAAGTTAATGAAC 57.515 33.333 0.00 0.00 35.64 3.18
2865 3590 9.485206 GTGGTTTAGAGACTACAAGTTAATGAA 57.515 33.333 0.00 0.00 32.01 2.57
2866 3591 8.644216 TGTGGTTTAGAGACTACAAGTTAATGA 58.356 33.333 0.00 0.00 37.95 2.57
2867 3592 8.827177 TGTGGTTTAGAGACTACAAGTTAATG 57.173 34.615 0.00 0.00 37.95 1.90
2868 3593 8.648693 ACTGTGGTTTAGAGACTACAAGTTAAT 58.351 33.333 0.00 0.00 39.94 1.40
2869 3594 8.015185 ACTGTGGTTTAGAGACTACAAGTTAA 57.985 34.615 0.00 0.00 39.94 2.01
2870 3595 7.592885 ACTGTGGTTTAGAGACTACAAGTTA 57.407 36.000 0.00 0.00 39.94 2.24
2871 3596 6.481434 ACTGTGGTTTAGAGACTACAAGTT 57.519 37.500 0.00 0.00 39.94 2.66
2872 3597 6.097839 TGAACTGTGGTTTAGAGACTACAAGT 59.902 38.462 0.00 0.00 39.94 3.16
2873 3598 6.513180 TGAACTGTGGTTTAGAGACTACAAG 58.487 40.000 0.00 0.00 39.94 3.16
2874 3599 6.097839 ACTGAACTGTGGTTTAGAGACTACAA 59.902 38.462 7.48 0.00 39.94 2.41
2875 3600 5.597182 ACTGAACTGTGGTTTAGAGACTACA 59.403 40.000 7.48 0.00 40.20 2.74
2876 3601 6.086785 ACTGAACTGTGGTTTAGAGACTAC 57.913 41.667 7.48 0.00 40.20 2.73
2877 3602 6.239232 GGAACTGAACTGTGGTTTAGAGACTA 60.239 42.308 7.48 0.00 40.20 2.59
2878 3603 5.453480 GGAACTGAACTGTGGTTTAGAGACT 60.453 44.000 7.48 0.00 40.20 3.24
2879 3604 4.750598 GGAACTGAACTGTGGTTTAGAGAC 59.249 45.833 7.48 0.00 40.20 3.36
2880 3605 4.500887 CGGAACTGAACTGTGGTTTAGAGA 60.501 45.833 7.48 0.00 40.20 3.10
2881 3606 3.741344 CGGAACTGAACTGTGGTTTAGAG 59.259 47.826 7.48 0.00 40.20 2.43
2882 3607 3.385433 TCGGAACTGAACTGTGGTTTAGA 59.615 43.478 7.48 0.00 40.20 2.10
2947 3672 4.584638 TGGCCAAGGTAATGAACTACAT 57.415 40.909 0.61 0.00 41.45 2.29
3038 3869 4.672542 CGCAATACACCTTTGATGGACTTG 60.673 45.833 0.00 0.00 0.00 3.16
3039 3870 3.440173 CGCAATACACCTTTGATGGACTT 59.560 43.478 0.00 0.00 0.00 3.01
3061 3892 4.503910 ACAAGAACAACAAAAGGGCTTTC 58.496 39.130 0.00 0.00 31.45 2.62
3097 3928 9.944663 TGCCAATATTAAAACGAAGATATGTTC 57.055 29.630 2.50 2.50 0.00 3.18
3199 4505 7.201496 CGTTTCACAACAAACTAGTAGACTTGT 60.201 37.037 3.59 9.89 34.59 3.16
3272 4615 3.931907 AGCATACCTAGCCACAATCAA 57.068 42.857 0.00 0.00 0.00 2.57
3367 4711 1.402787 AGTGCCCTTTGTGGTTTCAG 58.597 50.000 0.00 0.00 0.00 3.02
3433 4777 6.015180 GCTCATGGGCCTCAATAAAATATGAA 60.015 38.462 6.18 0.00 0.00 2.57
3447 4791 1.811778 TATCTTCAGCTCATGGGCCT 58.188 50.000 15.67 0.00 0.00 5.19
3640 4996 4.720649 TTCGCACTAGCACTTCTATCTT 57.279 40.909 0.00 0.00 42.27 2.40
3659 5015 2.932614 ACAGACGCACATGCTAGATTTC 59.067 45.455 1.82 0.00 39.32 2.17
3683 5039 3.244146 GCAATGCATACCAATATGGGCAA 60.244 43.478 0.00 0.00 43.37 4.52
3705 5061 6.293845 GCTAGAAATTATCCACTTGCATCCAG 60.294 42.308 0.00 0.00 33.11 3.86
3783 5139 5.279859 GGCTAAGCCCCTAATAACGATAAGT 60.280 44.000 0.00 0.00 44.06 2.24
3819 5175 2.767505 ACTTGACTCCTAAGCAAACGG 58.232 47.619 0.00 0.00 0.00 4.44
3933 5289 2.281139 GAAGGATGCGGCTAGGGC 60.281 66.667 0.00 0.00 37.82 5.19
3944 5300 2.049627 GAGATGGCGCAGGGAAGGAT 62.050 60.000 10.83 0.00 0.00 3.24
4182 5538 1.689243 CGGTGCCATGGAGAGGATCA 61.689 60.000 18.40 0.00 37.82 2.92
4194 5550 2.281484 GAAAGACCAGCGGTGCCA 60.281 61.111 9.63 0.00 35.25 4.92
4287 5643 4.643387 GCAGCGTGGTGGAGGGTT 62.643 66.667 0.82 0.00 0.00 4.11
4302 5658 0.462225 CTCCGAGGAGTAGACGAGCA 60.462 60.000 10.88 0.00 37.47 4.26
4303 5659 1.161563 CCTCCGAGGAGTAGACGAGC 61.162 65.000 17.04 0.00 37.67 5.03
4333 5689 0.526211 CGACCAGATCGTTGAGGACA 59.474 55.000 0.00 0.00 46.25 4.02
4352 5708 1.814169 GGATTCCTTGGACCGCGAC 60.814 63.158 8.23 0.17 0.00 5.19
4361 5717 2.482326 GGAACAGCCGGATTCCTTG 58.518 57.895 19.93 0.00 41.13 3.61
4435 5791 3.686854 TACCAGGGTAGGGCCGGT 61.687 66.667 1.90 0.00 38.44 5.28
4439 5795 2.132352 CCGAGTACCAGGGTAGGGC 61.132 68.421 0.00 0.00 0.00 5.19
4444 5800 2.038490 GGGACCGAGTACCAGGGT 59.962 66.667 8.80 4.69 36.34 4.34
4478 5834 4.899239 CTGGAGCGACGGATGGCC 62.899 72.222 0.00 0.00 0.00 5.36
4480 5836 4.899239 GGCTGGAGCGACGGATGG 62.899 72.222 0.00 0.00 43.26 3.51
4954 9593 2.759973 CTAGTCCGGAGCTGGGCA 60.760 66.667 3.06 0.00 35.53 5.36
5251 9891 0.320697 GTTAAGCAGGTCCTCCGTGT 59.679 55.000 0.00 0.00 39.05 4.49
5366 10006 2.365617 CTCGAGGGCATAGTACCATGTT 59.634 50.000 3.91 0.00 0.00 2.71
6064 10704 2.597217 CTCCCGGCCTGCACAAAA 60.597 61.111 0.00 0.00 0.00 2.44
6076 10716 1.203994 ACGGTCATAACACTTCTCCCG 59.796 52.381 0.00 0.00 39.96 5.14
6115 10755 1.136828 ACTTGAGCCACAACCCACTA 58.863 50.000 0.00 0.00 34.56 2.74
6129 10769 8.092687 GCCCCTAATAACGATAAGATAACTTGA 58.907 37.037 0.00 0.00 37.53 3.02
6212 10853 8.811017 TCTTGATTAGATTGATACATCTCCTCC 58.189 37.037 0.00 0.00 0.00 4.30
6453 11094 8.744652 TGACAAAAATTTCCTCACAACTAGAAA 58.255 29.630 0.00 0.00 33.13 2.52
6456 11097 7.479980 TGTGACAAAAATTTCCTCACAACTAG 58.520 34.615 17.05 0.00 38.58 2.57
6506 11183 3.423206 GCGTTGACAAAGAGCAGAAATTG 59.577 43.478 5.22 0.00 0.00 2.32
6548 11225 4.991056 GTGAAAAGGAAAAGGAAATGAGCC 59.009 41.667 0.00 0.00 0.00 4.70
6549 11226 5.463392 GTGTGAAAAGGAAAAGGAAATGAGC 59.537 40.000 0.00 0.00 0.00 4.26
6550 11227 6.809869 AGTGTGAAAAGGAAAAGGAAATGAG 58.190 36.000 0.00 0.00 0.00 2.90
6551 11228 6.790232 AGTGTGAAAAGGAAAAGGAAATGA 57.210 33.333 0.00 0.00 0.00 2.57
6553 11230 7.979537 GTGTTAGTGTGAAAAGGAAAAGGAAAT 59.020 33.333 0.00 0.00 0.00 2.17
6554 11231 7.177744 AGTGTTAGTGTGAAAAGGAAAAGGAAA 59.822 33.333 0.00 0.00 0.00 3.13
6555 11232 6.661805 AGTGTTAGTGTGAAAAGGAAAAGGAA 59.338 34.615 0.00 0.00 0.00 3.36
6558 11235 6.852664 ACAGTGTTAGTGTGAAAAGGAAAAG 58.147 36.000 0.00 0.00 29.04 2.27
6575 11252 7.672983 AAGAATCATCAACGATTACAGTGTT 57.327 32.000 0.00 0.00 35.74 3.32
6586 11263 7.167968 TGCTTTGAAGAAAAAGAATCATCAACG 59.832 33.333 0.99 0.00 39.12 4.10
6663 11343 7.587757 GTCAGCAGAACTACACTAAAAACATTG 59.412 37.037 0.00 0.00 0.00 2.82
6672 11352 2.826128 CCCAGTCAGCAGAACTACACTA 59.174 50.000 0.00 0.00 0.00 2.74
6673 11353 1.620819 CCCAGTCAGCAGAACTACACT 59.379 52.381 0.00 0.00 0.00 3.55
6674 11354 1.344763 ACCCAGTCAGCAGAACTACAC 59.655 52.381 0.00 0.00 0.00 2.90
6675 11355 1.618837 GACCCAGTCAGCAGAACTACA 59.381 52.381 0.00 0.00 32.09 2.74
6676 11356 1.618837 TGACCCAGTCAGCAGAACTAC 59.381 52.381 0.00 0.00 37.67 2.73
6677 11357 1.618837 GTGACCCAGTCAGCAGAACTA 59.381 52.381 0.00 0.00 43.57 2.24
6679 11359 0.106708 TGTGACCCAGTCAGCAGAAC 59.893 55.000 0.00 0.00 43.57 3.01
6682 11362 1.162698 CATTGTGACCCAGTCAGCAG 58.837 55.000 0.00 0.00 43.57 4.24
6683 11363 0.764271 TCATTGTGACCCAGTCAGCA 59.236 50.000 0.00 0.00 43.57 4.41
6684 11364 1.002430 TCTCATTGTGACCCAGTCAGC 59.998 52.381 0.00 0.00 43.57 4.26
6685 11365 2.934364 GCTCTCATTGTGACCCAGTCAG 60.934 54.545 0.00 0.00 43.57 3.51
6686 11366 1.002430 GCTCTCATTGTGACCCAGTCA 59.998 52.381 0.00 0.00 40.50 3.41
6687 11367 1.002430 TGCTCTCATTGTGACCCAGTC 59.998 52.381 0.00 0.00 0.00 3.51
6688 11368 1.059098 TGCTCTCATTGTGACCCAGT 58.941 50.000 0.00 0.00 0.00 4.00
6690 11370 2.158623 ACTTTGCTCTCATTGTGACCCA 60.159 45.455 0.00 0.00 0.00 4.51
6691 11371 2.508526 ACTTTGCTCTCATTGTGACCC 58.491 47.619 0.00 0.00 0.00 4.46
6692 11372 5.645497 AGATAACTTTGCTCTCATTGTGACC 59.355 40.000 0.00 0.00 0.00 4.02
6728 11408 7.818930 ACCATCAAATATGTTTGCCACTAAAAG 59.181 33.333 9.87 0.00 43.47 2.27
6733 11413 5.743636 AACCATCAAATATGTTTGCCACT 57.256 34.783 9.87 0.00 43.47 4.00
6763 11445 5.389859 TGGGTGCTACTCAAATTTCAATG 57.610 39.130 0.00 0.00 0.00 2.82
6788 11470 9.860898 GAGCAAGGTATATTGTTTCAGATTTTT 57.139 29.630 0.00 0.00 32.56 1.94
6822 11504 2.616893 CCAGATTCCCCCACCCCA 60.617 66.667 0.00 0.00 0.00 4.96
6823 11505 3.429580 CCCAGATTCCCCCACCCC 61.430 72.222 0.00 0.00 0.00 4.95
6824 11506 2.617215 ACCCAGATTCCCCCACCC 60.617 66.667 0.00 0.00 0.00 4.61
6825 11507 2.683475 CACCCAGATTCCCCCACC 59.317 66.667 0.00 0.00 0.00 4.61
6826 11508 2.043953 GCACCCAGATTCCCCCAC 60.044 66.667 0.00 0.00 0.00 4.61
6827 11509 2.534011 TGCACCCAGATTCCCCCA 60.534 61.111 0.00 0.00 0.00 4.96
6828 11510 2.043953 GTGCACCCAGATTCCCCC 60.044 66.667 5.22 0.00 0.00 5.40
6829 11511 0.623723 TAAGTGCACCCAGATTCCCC 59.376 55.000 14.63 0.00 0.00 4.81
6830 11512 2.736670 ATAAGTGCACCCAGATTCCC 57.263 50.000 14.63 0.00 0.00 3.97
6831 11513 6.951971 AGATATATAAGTGCACCCAGATTCC 58.048 40.000 14.63 0.00 0.00 3.01
6832 11514 8.097038 TGAAGATATATAAGTGCACCCAGATTC 58.903 37.037 14.63 7.37 0.00 2.52
6833 11515 7.977818 TGAAGATATATAAGTGCACCCAGATT 58.022 34.615 14.63 3.09 0.00 2.40
6852 11534 9.730705 TCACTGAAAATAAGTTCTGATGAAGAT 57.269 29.630 0.00 0.00 33.93 2.40
6853 11535 9.730705 ATCACTGAAAATAAGTTCTGATGAAGA 57.269 29.630 0.00 0.00 32.15 2.87
6854 11536 9.770503 CATCACTGAAAATAAGTTCTGATGAAG 57.229 33.333 9.74 1.36 39.86 3.02
6865 11547 7.585210 CGTATGCACATCATCACTGAAAATAAG 59.415 37.037 0.00 0.00 36.63 1.73
6871 11553 4.122143 TCGTATGCACATCATCACTGAA 57.878 40.909 0.00 0.00 36.63 3.02
6872 11554 3.799281 TCGTATGCACATCATCACTGA 57.201 42.857 0.00 0.00 36.63 3.41
7046 11732 1.065851 CAGAACAACAGCATGCACACA 59.934 47.619 21.98 0.00 42.53 3.72
7056 11742 6.692681 CACTACAAACAAATCCAGAACAACAG 59.307 38.462 0.00 0.00 0.00 3.16
7146 11832 1.001974 TCACTGCCGAGCTACACAAAT 59.998 47.619 0.00 0.00 0.00 2.32
7161 11847 2.163010 AGCAATCCGCAATTCTTCACTG 59.837 45.455 0.00 0.00 46.13 3.66
7237 11924 7.083858 GCAGTATTCTGTCAGCAATTAAAACA 58.916 34.615 1.02 0.00 43.05 2.83
7238 11925 7.083858 TGCAGTATTCTGTCAGCAATTAAAAC 58.916 34.615 1.02 0.00 43.05 2.43
7239 11926 7.213216 TGCAGTATTCTGTCAGCAATTAAAA 57.787 32.000 1.02 0.00 43.05 1.52
7243 11930 5.909621 AATGCAGTATTCTGTCAGCAATT 57.090 34.783 1.02 0.00 43.05 2.32
7299 11987 4.092968 AGTTTTAAGTGCAGCTATACGTGC 59.907 41.667 0.00 0.00 40.29 5.34
7309 11997 3.140325 TCCCTGGAGTTTTAAGTGCAG 57.860 47.619 10.76 10.76 44.50 4.41
7328 12016 6.861065 TTGTAAGCGGGATTAATTCTCATC 57.139 37.500 0.00 0.00 0.00 2.92
7391 12079 5.045651 TCCCTGAATCAAGATGCTACTTTCA 60.046 40.000 0.00 0.00 0.00 2.69
7465 12153 8.084073 TCTACTTTTAGTACGTAATGCAGTGTT 58.916 33.333 5.66 0.00 0.00 3.32
7495 12183 3.191162 TGCTGAACATTTTCCTGAATCCG 59.809 43.478 0.00 0.00 0.00 4.18
7526 12214 5.940192 ATGAACGCATTGAAACTTGAGTA 57.060 34.783 0.00 0.00 0.00 2.59
7542 12232 5.741425 CACAGGAAGCATATGTAATGAACG 58.259 41.667 4.29 0.00 0.00 3.95
7549 12239 4.080919 AGTTGAGCACAGGAAGCATATGTA 60.081 41.667 4.29 0.00 0.00 2.29
7598 12289 5.633601 TGTACTCGACTAAAAATGAGTGCAG 59.366 40.000 7.71 0.00 45.07 4.41
7601 12292 8.708742 TCATTTGTACTCGACTAAAAATGAGTG 58.291 33.333 18.80 4.21 41.50 3.51
7758 12451 6.136857 ACATAGATACAGAGTTAGCCAAGGA 58.863 40.000 0.00 0.00 0.00 3.36
7760 12453 7.721402 AGAACATAGATACAGAGTTAGCCAAG 58.279 38.462 0.00 0.00 0.00 3.61
7792 12485 7.787725 GGGTTACCTTGTACTGATATTCTTG 57.212 40.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.