Multiple sequence alignment - TraesCS6B01G300100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G300100 | chr6B | 100.000 | 5018 | 0 | 0 | 1 | 5018 | 538069673 | 538064656 | 0.000000e+00 | 9267.0 |
1 | TraesCS6B01G300100 | chr6B | 96.835 | 316 | 9 | 1 | 1629 | 1944 | 115140541 | 115140855 | 1.240000e-145 | 527.0 |
2 | TraesCS6B01G300100 | chr6B | 94.595 | 222 | 10 | 1 | 1931 | 2152 | 687066543 | 687066324 | 4.810000e-90 | 342.0 |
3 | TraesCS6B01G300100 | chr6B | 100.000 | 28 | 0 | 0 | 3587 | 3614 | 696028963 | 696028936 | 9.000000e-03 | 52.8 |
4 | TraesCS6B01G300100 | chr6A | 96.355 | 2798 | 80 | 14 | 2233 | 5018 | 499208559 | 499205772 | 0.000000e+00 | 4582.0 |
5 | TraesCS6B01G300100 | chr6A | 93.739 | 591 | 21 | 4 | 961 | 1537 | 499209316 | 499208728 | 0.000000e+00 | 872.0 |
6 | TraesCS6B01G300100 | chr6A | 86.130 | 447 | 45 | 6 | 523 | 960 | 429379592 | 429379154 | 2.740000e-127 | 466.0 |
7 | TraesCS6B01G300100 | chr6A | 90.057 | 352 | 32 | 3 | 94 | 443 | 1956441 | 1956091 | 2.130000e-123 | 453.0 |
8 | TraesCS6B01G300100 | chr6A | 89.205 | 352 | 35 | 2 | 94 | 443 | 34957090 | 34957440 | 2.150000e-118 | 436.0 |
9 | TraesCS6B01G300100 | chr6A | 92.432 | 185 | 14 | 0 | 94 | 278 | 34971027 | 34970843 | 1.070000e-66 | 265.0 |
10 | TraesCS6B01G300100 | chr6A | 86.932 | 176 | 23 | 0 | 789 | 964 | 429384436 | 429384611 | 1.100000e-46 | 198.0 |
11 | TraesCS6B01G300100 | chr6A | 75.104 | 482 | 75 | 31 | 514 | 963 | 34970562 | 34971030 | 3.090000e-42 | 183.0 |
12 | TraesCS6B01G300100 | chr6A | 97.260 | 73 | 2 | 0 | 1566 | 1638 | 499208623 | 499208551 | 1.900000e-24 | 124.0 |
13 | TraesCS6B01G300100 | chr6D | 96.949 | 2524 | 64 | 9 | 2500 | 5018 | 356733495 | 356730980 | 0.000000e+00 | 4222.0 |
14 | TraesCS6B01G300100 | chr6D | 93.570 | 591 | 24 | 2 | 961 | 1537 | 356734464 | 356733874 | 0.000000e+00 | 869.0 |
15 | TraesCS6B01G300100 | chr6D | 87.361 | 538 | 43 | 16 | 452 | 966 | 6238012 | 6238547 | 1.200000e-165 | 593.0 |
16 | TraesCS6B01G300100 | chr6D | 88.657 | 335 | 23 | 5 | 452 | 773 | 50999526 | 50999858 | 1.310000e-105 | 394.0 |
17 | TraesCS6B01G300100 | chr6D | 93.478 | 230 | 12 | 1 | 2203 | 2432 | 356733717 | 356733491 | 6.220000e-89 | 339.0 |
18 | TraesCS6B01G300100 | chr6D | 88.372 | 172 | 20 | 0 | 789 | 960 | 6236592 | 6236421 | 1.830000e-49 | 207.0 |
19 | TraesCS6B01G300100 | chr6D | 87.931 | 174 | 18 | 3 | 94 | 266 | 6238539 | 6238368 | 8.520000e-48 | 202.0 |
20 | TraesCS6B01G300100 | chr6D | 90.345 | 145 | 13 | 1 | 94 | 238 | 51000236 | 51000093 | 6.630000e-44 | 189.0 |
21 | TraesCS6B01G300100 | chr6D | 77.072 | 362 | 49 | 23 | 94 | 449 | 50997934 | 50998267 | 1.440000e-40 | 178.0 |
22 | TraesCS6B01G300100 | chr6D | 81.022 | 137 | 23 | 3 | 827 | 962 | 6057454 | 6057320 | 6.870000e-19 | 106.0 |
23 | TraesCS6B01G300100 | chr6D | 96.774 | 62 | 2 | 0 | 1577 | 1638 | 356733781 | 356733720 | 2.470000e-18 | 104.0 |
24 | TraesCS6B01G300100 | chr6D | 94.872 | 39 | 1 | 1 | 923 | 961 | 6057494 | 6057531 | 5.430000e-05 | 60.2 |
25 | TraesCS6B01G300100 | chr6D | 97.143 | 35 | 0 | 1 | 2164 | 2198 | 455883631 | 455883664 | 1.950000e-04 | 58.4 |
26 | TraesCS6B01G300100 | chr2B | 90.323 | 527 | 44 | 6 | 1634 | 2153 | 795119900 | 795120426 | 0.000000e+00 | 684.0 |
27 | TraesCS6B01G300100 | chr2B | 95.045 | 222 | 11 | 0 | 1931 | 2152 | 679054802 | 679055023 | 2.870000e-92 | 350.0 |
28 | TraesCS6B01G300100 | chr2B | 94.690 | 226 | 10 | 2 | 1931 | 2154 | 682130784 | 682130559 | 2.870000e-92 | 350.0 |
29 | TraesCS6B01G300100 | chr2B | 94.977 | 219 | 11 | 0 | 1931 | 2149 | 556701734 | 556701952 | 1.340000e-90 | 344.0 |
30 | TraesCS6B01G300100 | chr2B | 89.831 | 59 | 3 | 3 | 2361 | 2416 | 572154802 | 572154744 | 6.970000e-09 | 73.1 |
31 | TraesCS6B01G300100 | chr2D | 89.943 | 527 | 32 | 5 | 452 | 959 | 480134151 | 480133627 | 0.000000e+00 | 660.0 |
32 | TraesCS6B01G300100 | chr2D | 88.418 | 354 | 33 | 6 | 96 | 447 | 46870521 | 46870174 | 2.160000e-113 | 420.0 |
33 | TraesCS6B01G300100 | chr2D | 91.447 | 304 | 20 | 5 | 89 | 389 | 480136806 | 480136506 | 3.610000e-111 | 412.0 |
34 | TraesCS6B01G300100 | chr2D | 97.368 | 38 | 1 | 0 | 2165 | 2202 | 34235969 | 34235932 | 1.170000e-06 | 65.8 |
35 | TraesCS6B01G300100 | chr2D | 100.000 | 29 | 0 | 0 | 3586 | 3614 | 61299845 | 61299873 | 3.000000e-03 | 54.7 |
36 | TraesCS6B01G300100 | chr7D | 87.337 | 537 | 38 | 13 | 452 | 961 | 171328093 | 171327560 | 5.600000e-164 | 588.0 |
37 | TraesCS6B01G300100 | chr7D | 87.151 | 537 | 39 | 13 | 452 | 961 | 171334888 | 171334355 | 2.600000e-162 | 582.0 |
38 | TraesCS6B01G300100 | chr7D | 86.778 | 537 | 42 | 12 | 452 | 961 | 556308910 | 556309444 | 5.640000e-159 | 571.0 |
39 | TraesCS6B01G300100 | chr7D | 84.601 | 539 | 51 | 16 | 452 | 962 | 88606661 | 88606127 | 1.610000e-139 | 507.0 |
40 | TraesCS6B01G300100 | chr7D | 89.017 | 173 | 19 | 0 | 789 | 961 | 556307314 | 556307142 | 1.090000e-51 | 215.0 |
41 | TraesCS6B01G300100 | chr7D | 86.982 | 169 | 22 | 0 | 789 | 957 | 171332827 | 171332995 | 1.840000e-44 | 191.0 |
42 | TraesCS6B01G300100 | chr7D | 86.982 | 169 | 22 | 0 | 789 | 957 | 171339622 | 171339790 | 1.840000e-44 | 191.0 |
43 | TraesCS6B01G300100 | chr7D | 97.059 | 34 | 1 | 0 | 2164 | 2197 | 462673296 | 462673263 | 1.950000e-04 | 58.4 |
44 | TraesCS6B01G300100 | chr1D | 86.220 | 537 | 40 | 15 | 452 | 960 | 288098992 | 288098462 | 7.340000e-153 | 551.0 |
45 | TraesCS6B01G300100 | chr1D | 85.632 | 174 | 24 | 1 | 789 | 962 | 288100411 | 288100583 | 1.110000e-41 | 182.0 |
46 | TraesCS6B01G300100 | chr1D | 91.489 | 47 | 4 | 0 | 1482 | 1528 | 435295824 | 435295870 | 1.170000e-06 | 65.8 |
47 | TraesCS6B01G300100 | chr1D | 97.143 | 35 | 1 | 0 | 2163 | 2197 | 16894238 | 16894272 | 5.430000e-05 | 60.2 |
48 | TraesCS6B01G300100 | chr7B | 97.785 | 316 | 7 | 0 | 1629 | 1944 | 29238019 | 29237704 | 3.420000e-151 | 545.0 |
49 | TraesCS6B01G300100 | chr7B | 99.007 | 302 | 3 | 0 | 1634 | 1935 | 529283492 | 529283793 | 4.420000e-150 | 542.0 |
50 | TraesCS6B01G300100 | chr7B | 96.865 | 319 | 8 | 2 | 1633 | 1951 | 655112187 | 655112503 | 2.660000e-147 | 532.0 |
51 | TraesCS6B01G300100 | chr7B | 96.835 | 316 | 10 | 0 | 1629 | 1944 | 29274445 | 29274130 | 3.440000e-146 | 529.0 |
52 | TraesCS6B01G300100 | chr7B | 96.835 | 316 | 10 | 0 | 1629 | 1944 | 111833266 | 111833581 | 3.440000e-146 | 529.0 |
53 | TraesCS6B01G300100 | chr7B | 89.394 | 396 | 34 | 8 | 1634 | 2024 | 653904141 | 653904533 | 4.510000e-135 | 492.0 |
54 | TraesCS6B01G300100 | chr7B | 95.000 | 220 | 10 | 1 | 1930 | 2149 | 9688149 | 9687931 | 1.340000e-90 | 344.0 |
55 | TraesCS6B01G300100 | chr7B | 97.436 | 39 | 1 | 0 | 2164 | 2202 | 39554316 | 39554354 | 3.240000e-07 | 67.6 |
56 | TraesCS6B01G300100 | chr3B | 96.835 | 316 | 10 | 0 | 1629 | 1944 | 787100628 | 787100313 | 3.440000e-146 | 529.0 |
57 | TraesCS6B01G300100 | chr3B | 85.098 | 510 | 60 | 10 | 452 | 957 | 275917420 | 275916923 | 1.610000e-139 | 507.0 |
58 | TraesCS6B01G300100 | chr3B | 95.516 | 223 | 10 | 0 | 1930 | 2152 | 812801601 | 812801379 | 1.720000e-94 | 357.0 |
59 | TraesCS6B01G300100 | chr1A | 84.023 | 532 | 53 | 13 | 452 | 956 | 30359975 | 30359449 | 2.720000e-132 | 483.0 |
60 | TraesCS6B01G300100 | chr1A | 86.969 | 353 | 40 | 5 | 94 | 443 | 589038757 | 589038408 | 4.710000e-105 | 392.0 |
61 | TraesCS6B01G300100 | chr1A | 92.432 | 185 | 14 | 0 | 94 | 278 | 524400408 | 524400592 | 1.070000e-66 | 265.0 |
62 | TraesCS6B01G300100 | chr1A | 90.860 | 186 | 15 | 2 | 94 | 278 | 589034127 | 589034311 | 1.080000e-61 | 248.0 |
63 | TraesCS6B01G300100 | chr1A | 88.235 | 170 | 17 | 3 | 98 | 266 | 30359449 | 30359616 | 3.060000e-47 | 200.0 |
64 | TraesCS6B01G300100 | chr1A | 74.895 | 478 | 76 | 28 | 514 | 962 | 524400868 | 524400406 | 1.440000e-40 | 178.0 |
65 | TraesCS6B01G300100 | chr1A | 85.816 | 141 | 18 | 2 | 821 | 960 | 524401449 | 524401588 | 1.130000e-31 | 148.0 |
66 | TraesCS6B01G300100 | chr1A | 74.215 | 446 | 69 | 31 | 545 | 960 | 589034556 | 589034127 | 1.460000e-30 | 145.0 |
67 | TraesCS6B01G300100 | chr1A | 83.688 | 141 | 21 | 2 | 821 | 960 | 589038618 | 589038757 | 1.130000e-26 | 132.0 |
68 | TraesCS6B01G300100 | chr1A | 91.489 | 47 | 4 | 0 | 2165 | 2211 | 341013574 | 341013528 | 1.170000e-06 | 65.8 |
69 | TraesCS6B01G300100 | chr7A | 90.857 | 350 | 29 | 2 | 96 | 443 | 218243802 | 218243454 | 2.740000e-127 | 466.0 |
70 | TraesCS6B01G300100 | chr7A | 88.485 | 165 | 19 | 0 | 796 | 960 | 78183984 | 78183820 | 3.060000e-47 | 200.0 |
71 | TraesCS6B01G300100 | chr7A | 97.143 | 35 | 1 | 0 | 2163 | 2197 | 630330383 | 630330417 | 5.430000e-05 | 60.2 |
72 | TraesCS6B01G300100 | chr4B | 89.773 | 352 | 33 | 2 | 94 | 443 | 42231421 | 42231071 | 9.910000e-122 | 448.0 |
73 | TraesCS6B01G300100 | chr4B | 95.023 | 221 | 11 | 0 | 1931 | 2151 | 30754333 | 30754113 | 1.030000e-91 | 348.0 |
74 | TraesCS6B01G300100 | chr3A | 88.564 | 376 | 30 | 7 | 452 | 827 | 262527045 | 262526683 | 1.280000e-120 | 444.0 |
75 | TraesCS6B01G300100 | chr5B | 89.235 | 353 | 34 | 3 | 94 | 443 | 319313951 | 319314302 | 5.960000e-119 | 438.0 |
76 | TraesCS6B01G300100 | chr5B | 88.352 | 352 | 38 | 2 | 94 | 443 | 643304295 | 643304645 | 2.160000e-113 | 420.0 |
77 | TraesCS6B01G300100 | chr5B | 85.372 | 376 | 47 | 7 | 73 | 443 | 275700729 | 275700357 | 2.830000e-102 | 383.0 |
78 | TraesCS6B01G300100 | chr5B | 95.982 | 224 | 9 | 0 | 1929 | 2152 | 711617038 | 711616815 | 1.030000e-96 | 364.0 |
79 | TraesCS6B01G300100 | chr5B | 84.615 | 325 | 36 | 5 | 637 | 961 | 352128346 | 352128656 | 1.360000e-80 | 311.0 |
80 | TraesCS6B01G300100 | chr1B | 89.235 | 353 | 34 | 3 | 94 | 443 | 466927416 | 466927767 | 5.960000e-119 | 438.0 |
81 | TraesCS6B01G300100 | chr1B | 100.000 | 36 | 0 | 0 | 2165 | 2200 | 353270379 | 353270344 | 3.240000e-07 | 67.6 |
82 | TraesCS6B01G300100 | chr1B | 96.970 | 33 | 1 | 0 | 3586 | 3618 | 6540858 | 6540890 | 7.020000e-04 | 56.5 |
83 | TraesCS6B01G300100 | chr1B | 100.000 | 30 | 0 | 0 | 3589 | 3618 | 325271733 | 325271762 | 7.020000e-04 | 56.5 |
84 | TraesCS6B01G300100 | chr1B | 90.244 | 41 | 2 | 2 | 3575 | 3613 | 664698999 | 664699039 | 9.000000e-03 | 52.8 |
85 | TraesCS6B01G300100 | chr2A | 88.952 | 353 | 35 | 3 | 94 | 443 | 84142027 | 84142378 | 2.770000e-117 | 433.0 |
86 | TraesCS6B01G300100 | chr2A | 88.125 | 160 | 19 | 0 | 803 | 962 | 544154315 | 544154474 | 1.840000e-44 | 191.0 |
87 | TraesCS6B01G300100 | chr2A | 100.000 | 29 | 0 | 0 | 3586 | 3614 | 61773252 | 61773280 | 3.000000e-03 | 54.7 |
88 | TraesCS6B01G300100 | chr3D | 82.420 | 529 | 59 | 15 | 452 | 956 | 192054706 | 192055224 | 9.980000e-117 | 431.0 |
89 | TraesCS6B01G300100 | chr3D | 90.000 | 140 | 14 | 0 | 94 | 233 | 35357032 | 35356893 | 1.110000e-41 | 182.0 |
90 | TraesCS6B01G300100 | chr3D | 88.489 | 139 | 14 | 1 | 84 | 222 | 35355926 | 35356062 | 3.110000e-37 | 167.0 |
91 | TraesCS6B01G300100 | chr4A | 88.102 | 353 | 38 | 3 | 94 | 443 | 34863276 | 34862925 | 2.790000e-112 | 416.0 |
92 | TraesCS6B01G300100 | chr4A | 97.059 | 34 | 1 | 0 | 2164 | 2197 | 3350370 | 3350403 | 1.950000e-04 | 58.4 |
93 | TraesCS6B01G300100 | chr5D | 89.297 | 327 | 31 | 3 | 119 | 443 | 87168938 | 87168614 | 1.680000e-109 | 407.0 |
94 | TraesCS6B01G300100 | chr5D | 89.189 | 185 | 20 | 0 | 94 | 278 | 87163542 | 87163726 | 1.090000e-56 | 231.0 |
95 | TraesCS6B01G300100 | chr5D | 73.278 | 479 | 83 | 30 | 514 | 960 | 87164007 | 87163542 | 3.150000e-27 | 134.0 |
96 | TraesCS6B01G300100 | chr4D | 87.535 | 353 | 26 | 12 | 95 | 443 | 373808512 | 373808174 | 4.710000e-105 | 392.0 |
97 | TraesCS6B01G300100 | chr4D | 89.730 | 185 | 18 | 1 | 94 | 278 | 373781670 | 373781853 | 8.400000e-58 | 235.0 |
98 | TraesCS6B01G300100 | chr4D | 73.767 | 446 | 77 | 26 | 545 | 963 | 373782098 | 373781666 | 6.770000e-29 | 139.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G300100 | chr6B | 538064656 | 538069673 | 5017 | True | 9267.000000 | 9267 | 100.000000 | 1 | 5018 | 1 | chr6B.!!$R1 | 5017 |
1 | TraesCS6B01G300100 | chr6A | 499205772 | 499209316 | 3544 | True | 1859.333333 | 4582 | 95.784667 | 961 | 5018 | 3 | chr6A.!!$R4 | 4057 |
2 | TraesCS6B01G300100 | chr6D | 356730980 | 356734464 | 3484 | True | 1383.500000 | 4222 | 95.192750 | 961 | 5018 | 4 | chr6D.!!$R4 | 4057 |
3 | TraesCS6B01G300100 | chr6D | 6238012 | 6238547 | 535 | False | 593.000000 | 593 | 87.361000 | 452 | 966 | 1 | chr6D.!!$F2 | 514 |
4 | TraesCS6B01G300100 | chr6D | 50997934 | 50999858 | 1924 | False | 286.000000 | 394 | 82.864500 | 94 | 773 | 2 | chr6D.!!$F4 | 679 |
5 | TraesCS6B01G300100 | chr6D | 6236421 | 6238539 | 2118 | True | 204.500000 | 207 | 88.151500 | 94 | 960 | 2 | chr6D.!!$R3 | 866 |
6 | TraesCS6B01G300100 | chr2B | 795119900 | 795120426 | 526 | False | 684.000000 | 684 | 90.323000 | 1634 | 2153 | 1 | chr2B.!!$F3 | 519 |
7 | TraesCS6B01G300100 | chr2D | 480133627 | 480136806 | 3179 | True | 536.000000 | 660 | 90.695000 | 89 | 959 | 2 | chr2D.!!$R3 | 870 |
8 | TraesCS6B01G300100 | chr7D | 171327560 | 171328093 | 533 | True | 588.000000 | 588 | 87.337000 | 452 | 961 | 1 | chr7D.!!$R2 | 509 |
9 | TraesCS6B01G300100 | chr7D | 171334355 | 171334888 | 533 | True | 582.000000 | 582 | 87.151000 | 452 | 961 | 1 | chr7D.!!$R3 | 509 |
10 | TraesCS6B01G300100 | chr7D | 556308910 | 556309444 | 534 | False | 571.000000 | 571 | 86.778000 | 452 | 961 | 1 | chr7D.!!$F3 | 509 |
11 | TraesCS6B01G300100 | chr7D | 88606127 | 88606661 | 534 | True | 507.000000 | 507 | 84.601000 | 452 | 962 | 1 | chr7D.!!$R1 | 510 |
12 | TraesCS6B01G300100 | chr1D | 288098462 | 288098992 | 530 | True | 551.000000 | 551 | 86.220000 | 452 | 960 | 1 | chr1D.!!$R1 | 508 |
13 | TraesCS6B01G300100 | chr1A | 30359449 | 30359975 | 526 | True | 483.000000 | 483 | 84.023000 | 452 | 956 | 1 | chr1A.!!$R1 | 504 |
14 | TraesCS6B01G300100 | chr1A | 589034127 | 589038757 | 4630 | True | 268.500000 | 392 | 80.592000 | 94 | 960 | 2 | chr1A.!!$R4 | 866 |
15 | TraesCS6B01G300100 | chr1A | 524400408 | 524401588 | 1180 | False | 206.500000 | 265 | 89.124000 | 94 | 960 | 2 | chr1A.!!$F4 | 866 |
16 | TraesCS6B01G300100 | chr3D | 192054706 | 192055224 | 518 | False | 431.000000 | 431 | 82.420000 | 452 | 956 | 1 | chr3D.!!$F2 | 504 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
73 | 74 | 0.770499 | TCTGTTGATTCCAGGGCACA | 59.230 | 50.0 | 0.0 | 0.0 | 0.00 | 4.57 | F |
1656 | 7115 | 0.323542 | ACTCCCTCCGTCTAGGTGTG | 60.324 | 60.0 | 0.0 | 0.0 | 41.99 | 3.82 | F |
2401 | 7904 | 0.320050 | TCATCCTGTAGCAACGCACA | 59.680 | 50.0 | 0.0 | 0.0 | 0.00 | 4.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1686 | 7145 | 0.385473 | CACCGCGCCTAAGTGTTTTG | 60.385 | 55.0 | 0.00 | 0.0 | 0.0 | 2.44 | R |
2616 | 8122 | 0.304705 | GCGTCTCTTTGTGTGGTGTG | 59.695 | 55.0 | 0.00 | 0.0 | 0.0 | 3.82 | R |
4234 | 9746 | 1.963172 | AACAGACCGGACAGGAAAAC | 58.037 | 50.0 | 9.46 | 0.0 | 45.0 | 2.43 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.481112 | GCCAATCAACGGCGCCTG | 62.481 | 66.667 | 26.68 | 20.24 | 40.35 | 4.85 |
18 | 19 | 3.055719 | CCAATCAACGGCGCCTGT | 61.056 | 61.111 | 26.68 | 20.95 | 0.00 | 4.00 |
19 | 20 | 2.625823 | CCAATCAACGGCGCCTGTT | 61.626 | 57.895 | 26.68 | 25.34 | 0.00 | 3.16 |
20 | 21 | 1.154225 | CAATCAACGGCGCCTGTTC | 60.154 | 57.895 | 26.39 | 2.27 | 0.00 | 3.18 |
21 | 22 | 2.332654 | AATCAACGGCGCCTGTTCC | 61.333 | 57.895 | 26.39 | 1.55 | 0.00 | 3.62 |
30 | 31 | 2.915137 | GCCTGTTCCCCGCCAAAA | 60.915 | 61.111 | 0.00 | 0.00 | 0.00 | 2.44 |
31 | 32 | 2.503382 | GCCTGTTCCCCGCCAAAAA | 61.503 | 57.895 | 0.00 | 0.00 | 0.00 | 1.94 |
68 | 69 | 2.977914 | ACGACATCTGTTGATTCCAGG | 58.022 | 47.619 | 4.58 | 0.00 | 33.65 | 4.45 |
69 | 70 | 2.283298 | CGACATCTGTTGATTCCAGGG | 58.717 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
70 | 71 | 2.019984 | GACATCTGTTGATTCCAGGGC | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
71 | 72 | 1.355381 | ACATCTGTTGATTCCAGGGCA | 59.645 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
72 | 73 | 1.747355 | CATCTGTTGATTCCAGGGCAC | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
73 | 74 | 0.770499 | TCTGTTGATTCCAGGGCACA | 59.230 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
74 | 75 | 1.355381 | TCTGTTGATTCCAGGGCACAT | 59.645 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
75 | 76 | 2.173519 | CTGTTGATTCCAGGGCACATT | 58.826 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
76 | 77 | 2.564062 | CTGTTGATTCCAGGGCACATTT | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
77 | 78 | 2.971330 | TGTTGATTCCAGGGCACATTTT | 59.029 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
78 | 79 | 3.006752 | TGTTGATTCCAGGGCACATTTTC | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
79 | 80 | 2.178580 | TGATTCCAGGGCACATTTTCC | 58.821 | 47.619 | 0.00 | 0.00 | 0.00 | 3.13 |
80 | 81 | 2.225343 | TGATTCCAGGGCACATTTTCCT | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
81 | 82 | 2.397044 | TTCCAGGGCACATTTTCCTT | 57.603 | 45.000 | 0.00 | 0.00 | 0.00 | 3.36 |
82 | 83 | 1.631405 | TCCAGGGCACATTTTCCTTG | 58.369 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
83 | 84 | 1.133199 | TCCAGGGCACATTTTCCTTGT | 60.133 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
84 | 85 | 1.693606 | CCAGGGCACATTTTCCTTGTT | 59.306 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
85 | 86 | 2.104622 | CCAGGGCACATTTTCCTTGTTT | 59.895 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
86 | 87 | 3.392882 | CAGGGCACATTTTCCTTGTTTC | 58.607 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
87 | 88 | 3.070015 | CAGGGCACATTTTCCTTGTTTCT | 59.930 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
88 | 89 | 3.711190 | AGGGCACATTTTCCTTGTTTCTT | 59.289 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
89 | 90 | 4.164030 | AGGGCACATTTTCCTTGTTTCTTT | 59.836 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
90 | 91 | 4.881273 | GGGCACATTTTCCTTGTTTCTTTT | 59.119 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
91 | 92 | 5.007626 | GGGCACATTTTCCTTGTTTCTTTTC | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
92 | 93 | 5.007626 | GGCACATTTTCCTTGTTTCTTTTCC | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
109 | 110 | 1.803334 | TCCGAGTAAAATGCAAGCGT | 58.197 | 45.000 | 0.00 | 0.00 | 0.00 | 5.07 |
155 | 156 | 5.535030 | GTGTCACTTGGGTCCTAATTCTTTT | 59.465 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
197 | 198 | 9.052759 | GTCCTAAATCTTTCTAAGTTGTTCACA | 57.947 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
207 | 208 | 1.485066 | AGTTGTTCACACGAGGTCCTT | 59.515 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
208 | 209 | 2.093128 | AGTTGTTCACACGAGGTCCTTT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.11 |
225 | 226 | 3.646650 | TTTTTCGTCTGACCGTCGT | 57.353 | 47.368 | 1.55 | 0.00 | 0.00 | 4.34 |
273 | 277 | 3.054503 | CCACGTCGACTCGAGGGT | 61.055 | 66.667 | 21.64 | 11.51 | 44.42 | 4.34 |
278 | 282 | 1.970114 | GTCGACTCGAGGGTCCACA | 60.970 | 63.158 | 18.41 | 0.00 | 36.23 | 4.17 |
282 | 286 | 0.970937 | GACTCGAGGGTCCACATGGA | 60.971 | 60.000 | 18.41 | 0.00 | 43.08 | 3.41 |
336 | 340 | 1.080638 | AATGTGGCCCCTGGAGTTTA | 58.919 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
353 | 359 | 4.934356 | AGTTTATGCTTTCCTCATTCCCA | 58.066 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
389 | 410 | 1.447317 | GCTCGCTCTCTCCCTCTCTG | 61.447 | 65.000 | 0.00 | 0.00 | 0.00 | 3.35 |
390 | 411 | 0.819259 | CTCGCTCTCTCCCTCTCTGG | 60.819 | 65.000 | 0.00 | 0.00 | 0.00 | 3.86 |
391 | 412 | 2.489275 | CGCTCTCTCCCTCTCTGGC | 61.489 | 68.421 | 0.00 | 0.00 | 0.00 | 4.85 |
394 | 415 | 3.535962 | CTCTCCCTCTCTGGCGCC | 61.536 | 72.222 | 22.73 | 22.73 | 0.00 | 6.53 |
424 | 450 | 3.807538 | GCCATGTCTGCTGCCACG | 61.808 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
443 | 668 | 1.465387 | CGAGCTCGTCTACTGTGAAGT | 59.535 | 52.381 | 27.79 | 0.00 | 34.11 | 3.01 |
450 | 5701 | 2.228103 | CGTCTACTGTGAAGTGCCACTA | 59.772 | 50.000 | 0.00 | 0.00 | 37.89 | 2.74 |
475 | 5726 | 2.682856 | TCCTACATTGCAAAGGATTCGC | 59.317 | 45.455 | 13.31 | 0.00 | 34.46 | 4.70 |
500 | 5763 | 7.563888 | TCATTGATTCTGCCTAAATGAGAAG | 57.436 | 36.000 | 0.00 | 0.00 | 33.50 | 2.85 |
501 | 5764 | 5.824904 | TTGATTCTGCCTAAATGAGAAGC | 57.175 | 39.130 | 0.00 | 0.00 | 33.64 | 3.86 |
690 | 5998 | 2.966309 | GCCCTGTTTTCGCCAGACG | 61.966 | 63.158 | 0.00 | 0.00 | 45.62 | 4.18 |
792 | 6128 | 2.067605 | ATGGCCGGTCGTTATCCCA | 61.068 | 57.895 | 0.00 | 0.00 | 0.00 | 4.37 |
808 | 6144 | 3.901087 | CCACATGGGCATTCTGGTA | 57.099 | 52.632 | 0.00 | 0.00 | 0.00 | 3.25 |
810 | 6146 | 2.669781 | CCACATGGGCATTCTGGTATT | 58.330 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
854 | 6211 | 3.294214 | GTCAGACGGGATTAGGACCTTA | 58.706 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
858 | 6215 | 4.831155 | CAGACGGGATTAGGACCTTACATA | 59.169 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
867 | 6224 | 9.239551 | GGATTAGGACCTTACATAAACAACTTT | 57.760 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
970 | 6327 | 5.371115 | TGCATTTTACTCTTCTTTTCCCG | 57.629 | 39.130 | 0.00 | 0.00 | 0.00 | 5.14 |
989 | 6346 | 3.515286 | CCTTCGGCTCGGCTCGTA | 61.515 | 66.667 | 0.00 | 0.00 | 0.00 | 3.43 |
1113 | 6471 | 2.892425 | CCCACCTTCGCGCTCATC | 60.892 | 66.667 | 5.56 | 0.00 | 0.00 | 2.92 |
1195 | 6553 | 3.306780 | CGTCACCATCCTCAAGGTAAACT | 60.307 | 47.826 | 0.00 | 0.00 | 36.07 | 2.66 |
1219 | 6577 | 2.415491 | CGTGATTCCGAGTGCTTACTGA | 60.415 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1480 | 6851 | 7.241376 | CGGTTTAATTAAAGAGTAGTTGGCAG | 58.759 | 38.462 | 10.92 | 0.00 | 0.00 | 4.85 |
1494 | 6865 | 1.299850 | GGCAGGTTGTTGTTTCGCC | 60.300 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
1540 | 6995 | 0.672711 | GGAAACCTACCGCTGTGTCC | 60.673 | 60.000 | 0.00 | 0.00 | 31.93 | 4.02 |
1550 | 7005 | 2.997986 | ACCGCTGTGTCCGTTTAAATAG | 59.002 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
1551 | 7006 | 2.350498 | CCGCTGTGTCCGTTTAAATAGG | 59.650 | 50.000 | 6.39 | 6.39 | 0.00 | 2.57 |
1552 | 7007 | 2.997986 | CGCTGTGTCCGTTTAAATAGGT | 59.002 | 45.455 | 11.03 | 0.00 | 0.00 | 3.08 |
1555 | 7010 | 5.292589 | CGCTGTGTCCGTTTAAATAGGTTAT | 59.707 | 40.000 | 11.03 | 0.00 | 0.00 | 1.89 |
1557 | 7012 | 6.964934 | GCTGTGTCCGTTTAAATAGGTTATTG | 59.035 | 38.462 | 11.03 | 4.24 | 0.00 | 1.90 |
1558 | 7013 | 7.361457 | GCTGTGTCCGTTTAAATAGGTTATTGT | 60.361 | 37.037 | 11.03 | 0.00 | 0.00 | 2.71 |
1559 | 7014 | 8.393671 | TGTGTCCGTTTAAATAGGTTATTGTT | 57.606 | 30.769 | 11.03 | 0.00 | 0.00 | 2.83 |
1560 | 7015 | 8.848182 | TGTGTCCGTTTAAATAGGTTATTGTTT | 58.152 | 29.630 | 11.03 | 0.00 | 0.00 | 2.83 |
1561 | 7016 | 9.681692 | GTGTCCGTTTAAATAGGTTATTGTTTT | 57.318 | 29.630 | 11.03 | 0.00 | 0.00 | 2.43 |
1642 | 7101 | 4.563786 | GGCCTGCAGATAATTAGTACTCCC | 60.564 | 50.000 | 17.39 | 0.00 | 0.00 | 4.30 |
1645 | 7104 | 5.046950 | CCTGCAGATAATTAGTACTCCCTCC | 60.047 | 48.000 | 17.39 | 0.00 | 0.00 | 4.30 |
1656 | 7115 | 0.323542 | ACTCCCTCCGTCTAGGTGTG | 60.324 | 60.000 | 0.00 | 0.00 | 41.99 | 3.82 |
1670 | 7129 | 9.720809 | CCGTCTAGGTGTGTAAGTCATCTTACG | 62.721 | 48.148 | 11.67 | 0.00 | 44.84 | 3.18 |
1685 | 7144 | 8.674607 | AGTCATCTTACGAAAACCAAATAATCC | 58.325 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1686 | 7145 | 7.913821 | GTCATCTTACGAAAACCAAATAATCCC | 59.086 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1700 | 7159 | 5.576447 | AATAATCCCAAAACACTTAGGCG | 57.424 | 39.130 | 0.00 | 0.00 | 0.00 | 5.52 |
1729 | 7188 | 7.481798 | GTGCATTAAATTCTACCTCGTTTCTTG | 59.518 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1772 | 7231 | 0.731417 | GAGATGTGAGGTGTGCATGC | 59.269 | 55.000 | 11.82 | 11.82 | 0.00 | 4.06 |
1799 | 7258 | 7.724305 | TTAATGACTTGAGACTACCAAACAC | 57.276 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1817 | 7276 | 2.143122 | CACGACATGCAGTGGTTAGTT | 58.857 | 47.619 | 11.93 | 0.00 | 37.03 | 2.24 |
1818 | 7277 | 2.157668 | CACGACATGCAGTGGTTAGTTC | 59.842 | 50.000 | 11.93 | 0.00 | 37.03 | 3.01 |
1823 | 7282 | 3.057315 | ACATGCAGTGGTTAGTTCATTGC | 60.057 | 43.478 | 0.00 | 4.92 | 44.56 | 3.56 |
1913 | 7372 | 5.348997 | GTGCACAACCTAAGATGACTTACTC | 59.651 | 44.000 | 13.17 | 0.00 | 37.53 | 2.59 |
1978 | 7444 | 2.828128 | CGCGTACCCCTAGGTCGTC | 61.828 | 68.421 | 8.29 | 3.46 | 46.45 | 4.20 |
1979 | 7445 | 1.452833 | GCGTACCCCTAGGTCGTCT | 60.453 | 63.158 | 8.29 | 0.00 | 46.45 | 4.18 |
2000 | 7466 | 7.762615 | TCGTCTATTTGACCAACCTAATACAAG | 59.237 | 37.037 | 0.00 | 0.00 | 42.49 | 3.16 |
2105 | 7571 | 1.047801 | AGGGTGGTCAAATTGGCAAC | 58.952 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2132 | 7598 | 5.300286 | AGGTATACGCGTAGGACTTGTAAAT | 59.700 | 40.000 | 24.78 | 6.54 | 0.00 | 1.40 |
2136 | 7602 | 3.924686 | ACGCGTAGGACTTGTAAATTGAG | 59.075 | 43.478 | 11.67 | 0.00 | 0.00 | 3.02 |
2140 | 7606 | 4.561606 | CGTAGGACTTGTAAATTGAGACGG | 59.438 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
2144 | 7610 | 3.933332 | GACTTGTAAATTGAGACGGAGGG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2149 | 7615 | 4.401519 | TGTAAATTGAGACGGAGGGAGTAG | 59.598 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
2153 | 7619 | 1.489649 | TGAGACGGAGGGAGTAGTAGG | 59.510 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
2154 | 7620 | 0.845337 | AGACGGAGGGAGTAGTAGGG | 59.155 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2155 | 7621 | 0.842635 | GACGGAGGGAGTAGTAGGGA | 59.157 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2156 | 7622 | 0.845337 | ACGGAGGGAGTAGTAGGGAG | 59.155 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2157 | 7623 | 0.845337 | CGGAGGGAGTAGTAGGGAGT | 59.155 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2158 | 7624 | 1.214923 | CGGAGGGAGTAGTAGGGAGTT | 59.785 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
2159 | 7625 | 2.357986 | CGGAGGGAGTAGTAGGGAGTTT | 60.358 | 54.545 | 0.00 | 0.00 | 0.00 | 2.66 |
2160 | 7626 | 3.722172 | GGAGGGAGTAGTAGGGAGTTTT | 58.278 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2161 | 7627 | 4.102598 | GGAGGGAGTAGTAGGGAGTTTTT | 58.897 | 47.826 | 0.00 | 0.00 | 0.00 | 1.94 |
2162 | 7628 | 4.161942 | GGAGGGAGTAGTAGGGAGTTTTTC | 59.838 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2163 | 7629 | 5.024785 | GAGGGAGTAGTAGGGAGTTTTTCT | 58.975 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
2164 | 7630 | 6.163110 | AGGGAGTAGTAGGGAGTTTTTCTA | 57.837 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
2165 | 7631 | 5.957168 | AGGGAGTAGTAGGGAGTTTTTCTAC | 59.043 | 44.000 | 0.00 | 0.00 | 35.03 | 2.59 |
2172 | 7638 | 1.743394 | GGGAGTTTTTCTACCGCATGG | 59.257 | 52.381 | 0.00 | 0.00 | 37.42 | 3.66 |
2173 | 7639 | 1.743394 | GGAGTTTTTCTACCGCATGGG | 59.257 | 52.381 | 2.06 | 2.06 | 40.75 | 4.00 |
2174 | 7640 | 2.617021 | GGAGTTTTTCTACCGCATGGGA | 60.617 | 50.000 | 12.02 | 0.00 | 40.75 | 4.37 |
2175 | 7641 | 2.418976 | GAGTTTTTCTACCGCATGGGAC | 59.581 | 50.000 | 12.02 | 0.00 | 40.75 | 4.46 |
2189 | 7655 | 2.666272 | TGGGACATGTGGTTAGCAAA | 57.334 | 45.000 | 1.15 | 0.00 | 0.00 | 3.68 |
2190 | 7656 | 2.950781 | TGGGACATGTGGTTAGCAAAA | 58.049 | 42.857 | 1.15 | 0.00 | 0.00 | 2.44 |
2191 | 7657 | 3.505386 | TGGGACATGTGGTTAGCAAAAT | 58.495 | 40.909 | 1.15 | 0.00 | 0.00 | 1.82 |
2192 | 7658 | 4.667573 | TGGGACATGTGGTTAGCAAAATA | 58.332 | 39.130 | 1.15 | 0.00 | 0.00 | 1.40 |
2193 | 7659 | 5.080337 | TGGGACATGTGGTTAGCAAAATAA | 58.920 | 37.500 | 1.15 | 0.00 | 0.00 | 1.40 |
2194 | 7660 | 5.540337 | TGGGACATGTGGTTAGCAAAATAAA | 59.460 | 36.000 | 1.15 | 0.00 | 0.00 | 1.40 |
2195 | 7661 | 6.042093 | TGGGACATGTGGTTAGCAAAATAAAA | 59.958 | 34.615 | 1.15 | 0.00 | 0.00 | 1.52 |
2196 | 7662 | 6.931840 | GGGACATGTGGTTAGCAAAATAAAAA | 59.068 | 34.615 | 1.15 | 0.00 | 0.00 | 1.94 |
2222 | 7688 | 7.725818 | AAAGAGTAAGGAGTTTTTCTAACCG | 57.274 | 36.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2223 | 7689 | 6.416631 | AGAGTAAGGAGTTTTTCTAACCGT | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 4.83 |
2224 | 7690 | 7.530426 | AGAGTAAGGAGTTTTTCTAACCGTA | 57.470 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2225 | 7691 | 8.131847 | AGAGTAAGGAGTTTTTCTAACCGTAT | 57.868 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2226 | 7692 | 8.591940 | AGAGTAAGGAGTTTTTCTAACCGTATT | 58.408 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2227 | 7693 | 9.212641 | GAGTAAGGAGTTTTTCTAACCGTATTT | 57.787 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2228 | 7694 | 9.565090 | AGTAAGGAGTTTTTCTAACCGTATTTT | 57.435 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2229 | 7695 | 9.817365 | GTAAGGAGTTTTTCTAACCGTATTTTC | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2230 | 7696 | 7.444629 | AGGAGTTTTTCTAACCGTATTTTCC | 57.555 | 36.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2231 | 7697 | 6.432162 | AGGAGTTTTTCTAACCGTATTTTCCC | 59.568 | 38.462 | 0.00 | 0.00 | 0.00 | 3.97 |
2232 | 7698 | 6.432162 | GGAGTTTTTCTAACCGTATTTTCCCT | 59.568 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
2233 | 7699 | 7.607607 | GGAGTTTTTCTAACCGTATTTTCCCTA | 59.392 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
2234 | 7700 | 8.922931 | AGTTTTTCTAACCGTATTTTCCCTAA | 57.077 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
2235 | 7701 | 9.524496 | AGTTTTTCTAACCGTATTTTCCCTAAT | 57.476 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
2241 | 7707 | 8.579863 | TCTAACCGTATTTTCCCTAATACTAGC | 58.420 | 37.037 | 0.00 | 0.00 | 38.34 | 3.42 |
2268 | 7771 | 7.286316 | AGAGATTATTTCCAAAACAGCCCATAG | 59.714 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
2311 | 7814 | 5.869888 | CCTAGAATAATTAGCCACCGACATC | 59.130 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2339 | 7842 | 4.329545 | AGTCAATGCCACCGCGGT | 62.330 | 61.111 | 28.70 | 28.70 | 38.08 | 5.68 |
2396 | 7899 | 8.243426 | TCAAATATTGTTTCATCCTGTAGCAAC | 58.757 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
2401 | 7904 | 0.320050 | TCATCCTGTAGCAACGCACA | 59.680 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2444 | 7947 | 8.803397 | ATTAGTGGGGTAGTGTTTTTCTTATC | 57.197 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
2448 | 7951 | 6.371825 | GTGGGGTAGTGTTTTTCTTATCTGAG | 59.628 | 42.308 | 0.00 | 0.00 | 0.00 | 3.35 |
2455 | 7958 | 8.147642 | AGTGTTTTTCTTATCTGAGTTGACAG | 57.852 | 34.615 | 0.00 | 0.00 | 39.02 | 3.51 |
2460 | 7963 | 3.506067 | TCTTATCTGAGTTGACAGTCGCA | 59.494 | 43.478 | 0.00 | 0.00 | 38.79 | 5.10 |
2462 | 7965 | 2.070262 | TCTGAGTTGACAGTCGCATG | 57.930 | 50.000 | 0.00 | 0.00 | 38.79 | 4.06 |
2504 | 8007 | 4.710324 | TCAAATTGTTCGGAGTTGGTAGT | 58.290 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
2564 | 8068 | 4.482025 | TGGAGGGGAATGAAATAGGACAAT | 59.518 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
2616 | 8122 | 6.935167 | TGGAAAAATCTGGAATAAAAGCTCC | 58.065 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2637 | 8143 | 0.583438 | CACCACACAAAGAGACGCAG | 59.417 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2675 | 8181 | 6.425114 | CAGATATCTCCGTCCTAAACAAATGG | 59.575 | 42.308 | 1.03 | 0.00 | 0.00 | 3.16 |
2684 | 8190 | 6.586082 | CCGTCCTAAACAAATGGAATTTTCAG | 59.414 | 38.462 | 0.00 | 0.00 | 46.10 | 3.02 |
2753 | 8262 | 7.553881 | TTATTAAGAAGGAATTGCGGAGAAG | 57.446 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3007 | 8516 | 3.519510 | CCCCTCCAAGAGATGAAGTTACA | 59.480 | 47.826 | 0.00 | 0.00 | 0.00 | 2.41 |
3042 | 8551 | 5.590818 | AGGAGATACTAAAGGTCTGGTGAA | 58.409 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3043 | 8552 | 6.023603 | AGGAGATACTAAAGGTCTGGTGAAA | 58.976 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3044 | 8553 | 6.500751 | AGGAGATACTAAAGGTCTGGTGAAAA | 59.499 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
3328 | 8838 | 8.079203 | AGATACATATAACTGAAGAGCAACTCG | 58.921 | 37.037 | 0.00 | 0.00 | 35.36 | 4.18 |
3729 | 9240 | 5.716228 | TCTGAACCTTGGCATGAATAATTGT | 59.284 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3752 | 9263 | 4.929211 | TGAATACAGACTCACCACGAATTG | 59.071 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
3873 | 9384 | 1.363744 | CAGATGCACCGTTTCCTCTC | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3918 | 9429 | 4.911514 | TTCAGCTTTTGTTAAGGGTGAC | 57.088 | 40.909 | 2.07 | 0.00 | 44.31 | 3.67 |
3999 | 9510 | 6.956202 | AAGTATACCACAGTTAGCGAGTAT | 57.044 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
4083 | 9594 | 9.985318 | TTTGTTTCAATTGACATTTTGAATGAC | 57.015 | 25.926 | 7.89 | 10.05 | 40.46 | 3.06 |
4115 | 9626 | 6.998074 | AGTGATGAATGTGTTCCAAGTTCTTA | 59.002 | 34.615 | 0.00 | 0.00 | 33.26 | 2.10 |
4121 | 9632 | 3.745975 | TGTGTTCCAAGTTCTTATGCTCG | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
4234 | 9746 | 4.631377 | TGAAGCCGTCAGATGTTCTTATTG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
4303 | 9815 | 6.560003 | TCCTGTTCATTCCAGCTAATCTTA | 57.440 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
4314 | 9826 | 4.514441 | CCAGCTAATCTTATGAAGCACCAG | 59.486 | 45.833 | 5.41 | 0.00 | 37.44 | 4.00 |
4591 | 10103 | 3.885901 | GTGCTTTGGTTTCTTCTCTCCTT | 59.114 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
4687 | 10201 | 4.991153 | TCTGTCTATAACTCCTGCTGTG | 57.009 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
4745 | 10259 | 2.565841 | AGAAAGTCATATCGCCCTTGC | 58.434 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
4747 | 10261 | 2.717639 | AAGTCATATCGCCCTTGCTT | 57.282 | 45.000 | 0.00 | 0.00 | 34.43 | 3.91 |
4900 | 10415 | 7.607250 | ACCAGATATTTCATTCGAGATACCTC | 58.393 | 38.462 | 0.00 | 0.00 | 36.08 | 3.85 |
4932 | 10447 | 3.376234 | ACTTCAATCAGATGGCATGAACG | 59.624 | 43.478 | 3.81 | 0.08 | 0.00 | 3.95 |
4940 | 10455 | 0.466189 | ATGGCATGAACGGATGGACC | 60.466 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4944 | 10459 | 2.639065 | GCATGAACGGATGGACCTAAA | 58.361 | 47.619 | 0.00 | 0.00 | 36.31 | 1.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 2.527547 | GAACAGGCGCCGTTGATTGG | 62.528 | 60.000 | 31.41 | 14.58 | 0.00 | 3.16 |
3 | 4 | 2.332654 | GGAACAGGCGCCGTTGATT | 61.333 | 57.895 | 31.41 | 18.98 | 0.00 | 2.57 |
4 | 5 | 2.746277 | GGAACAGGCGCCGTTGAT | 60.746 | 61.111 | 31.41 | 17.87 | 0.00 | 2.57 |
14 | 15 | 3.863606 | TTTTTGGCGGGGAACAGG | 58.136 | 55.556 | 0.00 | 0.00 | 0.00 | 4.00 |
46 | 47 | 3.125829 | CCTGGAATCAACAGATGTCGTTG | 59.874 | 47.826 | 0.00 | 0.00 | 44.11 | 4.10 |
47 | 48 | 3.338249 | CCTGGAATCAACAGATGTCGTT | 58.662 | 45.455 | 0.00 | 0.00 | 38.20 | 3.85 |
48 | 49 | 2.355108 | CCCTGGAATCAACAGATGTCGT | 60.355 | 50.000 | 0.00 | 0.00 | 38.20 | 4.34 |
49 | 50 | 2.283298 | CCCTGGAATCAACAGATGTCG | 58.717 | 52.381 | 0.00 | 0.00 | 38.20 | 4.35 |
50 | 51 | 2.019984 | GCCCTGGAATCAACAGATGTC | 58.980 | 52.381 | 0.00 | 0.00 | 38.20 | 3.06 |
51 | 52 | 1.355381 | TGCCCTGGAATCAACAGATGT | 59.645 | 47.619 | 0.00 | 0.00 | 38.20 | 3.06 |
52 | 53 | 1.747355 | GTGCCCTGGAATCAACAGATG | 59.253 | 52.381 | 0.00 | 0.00 | 38.20 | 2.90 |
53 | 54 | 1.355381 | TGTGCCCTGGAATCAACAGAT | 59.645 | 47.619 | 0.00 | 0.00 | 38.20 | 2.90 |
54 | 55 | 0.770499 | TGTGCCCTGGAATCAACAGA | 59.230 | 50.000 | 0.00 | 0.00 | 38.20 | 3.41 |
55 | 56 | 1.843368 | ATGTGCCCTGGAATCAACAG | 58.157 | 50.000 | 0.00 | 0.00 | 35.74 | 3.16 |
56 | 57 | 2.307496 | AATGTGCCCTGGAATCAACA | 57.693 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
57 | 58 | 3.588955 | GAAAATGTGCCCTGGAATCAAC | 58.411 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
58 | 59 | 2.566724 | GGAAAATGTGCCCTGGAATCAA | 59.433 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
59 | 60 | 2.178580 | GGAAAATGTGCCCTGGAATCA | 58.821 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
60 | 61 | 2.460669 | AGGAAAATGTGCCCTGGAATC | 58.539 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
61 | 62 | 2.568509 | CAAGGAAAATGTGCCCTGGAAT | 59.431 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
62 | 63 | 1.969923 | CAAGGAAAATGTGCCCTGGAA | 59.030 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
63 | 64 | 1.133199 | ACAAGGAAAATGTGCCCTGGA | 60.133 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
64 | 65 | 1.341080 | ACAAGGAAAATGTGCCCTGG | 58.659 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
65 | 66 | 3.070015 | AGAAACAAGGAAAATGTGCCCTG | 59.930 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
66 | 67 | 3.308401 | AGAAACAAGGAAAATGTGCCCT | 58.692 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
67 | 68 | 3.751479 | AGAAACAAGGAAAATGTGCCC | 57.249 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
68 | 69 | 5.007626 | GGAAAAGAAACAAGGAAAATGTGCC | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
69 | 70 | 5.276820 | CGGAAAAGAAACAAGGAAAATGTGC | 60.277 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
70 | 71 | 6.039616 | TCGGAAAAGAAACAAGGAAAATGTG | 58.960 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
71 | 72 | 6.127451 | ACTCGGAAAAGAAACAAGGAAAATGT | 60.127 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
72 | 73 | 6.273071 | ACTCGGAAAAGAAACAAGGAAAATG | 58.727 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
73 | 74 | 6.465439 | ACTCGGAAAAGAAACAAGGAAAAT | 57.535 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
74 | 75 | 5.907866 | ACTCGGAAAAGAAACAAGGAAAA | 57.092 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
75 | 76 | 7.393841 | TTTACTCGGAAAAGAAACAAGGAAA | 57.606 | 32.000 | 0.00 | 0.00 | 0.00 | 3.13 |
76 | 77 | 7.393841 | TTTTACTCGGAAAAGAAACAAGGAA | 57.606 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
77 | 78 | 7.422399 | CATTTTACTCGGAAAAGAAACAAGGA | 58.578 | 34.615 | 0.00 | 0.00 | 32.06 | 3.36 |
78 | 79 | 6.143919 | GCATTTTACTCGGAAAAGAAACAAGG | 59.856 | 38.462 | 0.00 | 0.00 | 32.06 | 3.61 |
79 | 80 | 6.695278 | TGCATTTTACTCGGAAAAGAAACAAG | 59.305 | 34.615 | 0.00 | 0.00 | 32.06 | 3.16 |
80 | 81 | 6.565234 | TGCATTTTACTCGGAAAAGAAACAA | 58.435 | 32.000 | 0.00 | 0.00 | 32.06 | 2.83 |
81 | 82 | 6.137794 | TGCATTTTACTCGGAAAAGAAACA | 57.862 | 33.333 | 0.00 | 0.00 | 32.06 | 2.83 |
82 | 83 | 6.345803 | GCTTGCATTTTACTCGGAAAAGAAAC | 60.346 | 38.462 | 0.00 | 0.00 | 32.06 | 2.78 |
83 | 84 | 5.689961 | GCTTGCATTTTACTCGGAAAAGAAA | 59.310 | 36.000 | 0.00 | 0.00 | 32.06 | 2.52 |
84 | 85 | 5.219633 | GCTTGCATTTTACTCGGAAAAGAA | 58.780 | 37.500 | 0.00 | 0.00 | 32.06 | 2.52 |
85 | 86 | 4.612712 | CGCTTGCATTTTACTCGGAAAAGA | 60.613 | 41.667 | 0.00 | 0.00 | 32.06 | 2.52 |
86 | 87 | 3.603770 | CGCTTGCATTTTACTCGGAAAAG | 59.396 | 43.478 | 0.00 | 0.00 | 32.06 | 2.27 |
87 | 88 | 3.003897 | ACGCTTGCATTTTACTCGGAAAA | 59.996 | 39.130 | 0.00 | 0.00 | 33.04 | 2.29 |
88 | 89 | 2.550606 | ACGCTTGCATTTTACTCGGAAA | 59.449 | 40.909 | 0.00 | 0.00 | 0.00 | 3.13 |
89 | 90 | 2.095969 | CACGCTTGCATTTTACTCGGAA | 60.096 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
90 | 91 | 1.463056 | CACGCTTGCATTTTACTCGGA | 59.537 | 47.619 | 0.00 | 0.00 | 0.00 | 4.55 |
91 | 92 | 1.465689 | CCACGCTTGCATTTTACTCGG | 60.466 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
92 | 93 | 1.196808 | ACCACGCTTGCATTTTACTCG | 59.803 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
109 | 110 | 7.060421 | ACACTTTCAGAAAAGAATTAGGACCA | 58.940 | 34.615 | 4.99 | 0.00 | 43.90 | 4.02 |
155 | 156 | 8.448008 | AGATTTAGGACCCAGATATGCATTTTA | 58.552 | 33.333 | 3.54 | 0.00 | 0.00 | 1.52 |
207 | 208 | 1.589320 | CAACGACGGTCAGACGAAAAA | 59.411 | 47.619 | 9.10 | 0.00 | 40.26 | 1.94 |
208 | 209 | 1.202203 | CAACGACGGTCAGACGAAAA | 58.798 | 50.000 | 9.10 | 0.00 | 40.26 | 2.29 |
222 | 223 | 3.973516 | ACGCGAGCTGGTCAACGA | 61.974 | 61.111 | 15.93 | 0.00 | 0.00 | 3.85 |
282 | 286 | 2.438434 | CCAGCCGCGGGAAATCTT | 60.438 | 61.111 | 29.38 | 0.00 | 0.00 | 2.40 |
336 | 340 | 3.359950 | GACTTGGGAATGAGGAAAGCAT | 58.640 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
353 | 359 | 2.462723 | GAGCAGAAGACCTAGGGACTT | 58.537 | 52.381 | 18.90 | 18.90 | 40.05 | 3.01 |
424 | 450 | 2.857618 | CACTTCACAGTAGACGAGCTC | 58.142 | 52.381 | 2.73 | 2.73 | 0.00 | 4.09 |
434 | 659 | 1.699634 | ACCATAGTGGCACTTCACAGT | 59.300 | 47.619 | 27.24 | 13.32 | 42.67 | 3.55 |
443 | 668 | 2.421388 | GCAATGTAGGACCATAGTGGCA | 60.421 | 50.000 | 0.00 | 0.00 | 42.67 | 4.92 |
450 | 5701 | 3.737559 | TCCTTTGCAATGTAGGACCAT | 57.262 | 42.857 | 13.31 | 0.00 | 33.23 | 3.55 |
475 | 5726 | 7.563888 | TTCTCATTTAGGCAGAATCAATGAG | 57.436 | 36.000 | 12.14 | 12.14 | 46.58 | 2.90 |
500 | 5763 | 2.180432 | ACTGTTTAGTTCCCCTTCGC | 57.820 | 50.000 | 0.00 | 0.00 | 31.66 | 4.70 |
501 | 5764 | 3.512724 | TCCTACTGTTTAGTTCCCCTTCG | 59.487 | 47.826 | 0.00 | 0.00 | 38.36 | 3.79 |
667 | 5975 | 0.321741 | TGGCGAAAACAGGGCGATTA | 60.322 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
690 | 5998 | 1.690985 | CACCCCTCTCCTTCTCCCC | 60.691 | 68.421 | 0.00 | 0.00 | 0.00 | 4.81 |
697 | 6005 | 2.184631 | TCTTCCCCACCCCTCTCCT | 61.185 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
792 | 6128 | 3.290710 | GTCAATACCAGAATGCCCATGT | 58.709 | 45.455 | 0.00 | 0.00 | 31.97 | 3.21 |
800 | 6136 | 2.027192 | AGTGCCACGTCAATACCAGAAT | 60.027 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
801 | 6137 | 1.346395 | AGTGCCACGTCAATACCAGAA | 59.654 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
808 | 6144 | 0.603707 | CTGACCAGTGCCACGTCAAT | 60.604 | 55.000 | 6.94 | 0.00 | 36.16 | 2.57 |
810 | 6146 | 2.421314 | CTGACCAGTGCCACGTCA | 59.579 | 61.111 | 5.61 | 5.61 | 35.34 | 4.35 |
858 | 6215 | 8.966868 | TGAGTCCTAAATCTTTCAAAGTTGTTT | 58.033 | 29.630 | 0.00 | 0.96 | 0.00 | 2.83 |
867 | 6224 | 7.795047 | TGCATATCTGAGTCCTAAATCTTTCA | 58.205 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
908 | 6265 | 8.055279 | TCTTTTCTGAAATTGTCACTTGAGTT | 57.945 | 30.769 | 3.31 | 0.00 | 31.13 | 3.01 |
921 | 6278 | 5.163754 | CGCGGTCCTAATTCTTTTCTGAAAT | 60.164 | 40.000 | 3.31 | 0.00 | 0.00 | 2.17 |
1175 | 6533 | 3.263425 | GGAGTTTACCTTGAGGATGGTGA | 59.737 | 47.826 | 3.59 | 0.00 | 37.74 | 4.02 |
1195 | 6553 | 1.541310 | AAGCACTCGGAATCACGGGA | 61.541 | 55.000 | 0.00 | 0.00 | 37.86 | 5.14 |
1219 | 6577 | 1.298859 | GATTTCGGCACAGGAAGCGT | 61.299 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
1455 | 6826 | 7.136289 | TGCCAACTACTCTTTAATTAAACCG | 57.864 | 36.000 | 6.54 | 3.85 | 0.00 | 4.44 |
1480 | 6851 | 2.354188 | GCGGGCGAAACAACAACC | 60.354 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
1494 | 6865 | 3.986572 | TGTTTTTGCATTAATGACTGCGG | 59.013 | 39.130 | 19.73 | 0.00 | 41.32 | 5.69 |
1550 | 7005 | 9.131416 | CGGTTTCCAAATACTAAAACAATAACC | 57.869 | 33.333 | 0.00 | 0.00 | 34.15 | 2.85 |
1551 | 7006 | 9.896263 | TCGGTTTCCAAATACTAAAACAATAAC | 57.104 | 29.630 | 0.00 | 0.00 | 34.15 | 1.89 |
1555 | 7010 | 7.282675 | TGTCTCGGTTTCCAAATACTAAAACAA | 59.717 | 33.333 | 0.00 | 0.00 | 34.15 | 2.83 |
1557 | 7012 | 7.193377 | TGTCTCGGTTTCCAAATACTAAAAC | 57.807 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1558 | 7013 | 7.989416 | ATGTCTCGGTTTCCAAATACTAAAA | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1559 | 7014 | 7.989416 | AATGTCTCGGTTTCCAAATACTAAA | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1560 | 7015 | 9.675464 | ATTAATGTCTCGGTTTCCAAATACTAA | 57.325 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
1561 | 7016 | 9.104965 | CATTAATGTCTCGGTTTCCAAATACTA | 57.895 | 33.333 | 7.32 | 0.00 | 0.00 | 1.82 |
1562 | 7017 | 7.415206 | GCATTAATGTCTCGGTTTCCAAATACT | 60.415 | 37.037 | 16.61 | 0.00 | 0.00 | 2.12 |
1563 | 7018 | 6.691388 | GCATTAATGTCTCGGTTTCCAAATAC | 59.309 | 38.462 | 16.61 | 0.00 | 0.00 | 1.89 |
1564 | 7019 | 6.375736 | TGCATTAATGTCTCGGTTTCCAAATA | 59.624 | 34.615 | 16.61 | 0.00 | 0.00 | 1.40 |
1617 | 7076 | 5.220710 | AGTACTAATTATCTGCAGGCCTG | 57.779 | 43.478 | 29.34 | 29.34 | 0.00 | 4.85 |
1642 | 7101 | 3.079578 | TGACTTACACACCTAGACGGAG | 58.920 | 50.000 | 0.00 | 0.00 | 36.31 | 4.63 |
1645 | 7104 | 4.966965 | AGATGACTTACACACCTAGACG | 57.033 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
1670 | 7129 | 8.445275 | AAGTGTTTTGGGATTATTTGGTTTTC | 57.555 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
1685 | 7144 | 1.209127 | CCGCGCCTAAGTGTTTTGG | 59.791 | 57.895 | 0.00 | 0.00 | 33.04 | 3.28 |
1686 | 7145 | 0.385473 | CACCGCGCCTAAGTGTTTTG | 60.385 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1700 | 7159 | 3.303132 | CGAGGTAGAATTTAATGCACCGC | 60.303 | 47.826 | 0.00 | 0.00 | 0.00 | 5.68 |
1715 | 7174 | 5.522460 | TGTCAAGAAACAAGAAACGAGGTAG | 59.478 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1729 | 7188 | 9.994432 | CTCTTATTGGTTGATATGTCAAGAAAC | 57.006 | 33.333 | 4.98 | 0.00 | 44.58 | 2.78 |
1772 | 7231 | 8.836413 | TGTTTGGTAGTCTCAAGTCATTAAAAG | 58.164 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
1799 | 7258 | 2.412870 | TGAACTAACCACTGCATGTCG | 58.587 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
1851 | 7310 | 6.311690 | GGAGGAGAAAACGAGAGAACTTAATG | 59.688 | 42.308 | 0.00 | 0.00 | 0.00 | 1.90 |
1871 | 7330 | 1.609501 | CCGTGACCAAGGAGGAGGA | 60.610 | 63.158 | 0.00 | 0.00 | 41.22 | 3.71 |
1913 | 7372 | 1.212441 | AGTACTCCCTCCGTCTAGGTG | 59.788 | 57.143 | 0.00 | 0.00 | 41.99 | 4.00 |
1940 | 7406 | 2.737359 | CGCACGCCCTATAAACTGAGAA | 60.737 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1978 | 7444 | 8.786826 | TGACTTGTATTAGGTTGGTCAAATAG | 57.213 | 34.615 | 0.00 | 0.00 | 30.81 | 1.73 |
2077 | 7543 | 7.566879 | TGCCAATTTGACCACCCTAATATAAAT | 59.433 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2087 | 7553 | 0.034756 | GGTTGCCAATTTGACCACCC | 59.965 | 55.000 | 0.00 | 0.00 | 32.41 | 4.61 |
2092 | 7558 | 5.007332 | CGTATACCTAGGTTGCCAATTTGAC | 59.993 | 44.000 | 22.11 | 1.58 | 0.00 | 3.18 |
2100 | 7566 | 0.386838 | ACGCGTATACCTAGGTTGCC | 59.613 | 55.000 | 22.11 | 7.02 | 0.00 | 4.52 |
2105 | 7571 | 3.051081 | AGTCCTACGCGTATACCTAGG | 57.949 | 52.381 | 20.91 | 18.03 | 0.00 | 3.02 |
2132 | 7598 | 2.092538 | CCTACTACTCCCTCCGTCTCAA | 60.093 | 54.545 | 0.00 | 0.00 | 0.00 | 3.02 |
2136 | 7602 | 0.842635 | TCCCTACTACTCCCTCCGTC | 59.157 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2140 | 7606 | 5.024785 | AGAAAAACTCCCTACTACTCCCTC | 58.975 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2144 | 7610 | 5.678361 | GCGGTAGAAAAACTCCCTACTACTC | 60.678 | 48.000 | 0.00 | 0.00 | 34.69 | 2.59 |
2149 | 7615 | 3.323751 | TGCGGTAGAAAAACTCCCTAC | 57.676 | 47.619 | 0.00 | 0.00 | 33.79 | 3.18 |
2153 | 7619 | 1.743394 | CCCATGCGGTAGAAAAACTCC | 59.257 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2154 | 7620 | 2.418976 | GTCCCATGCGGTAGAAAAACTC | 59.581 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2155 | 7621 | 2.224670 | TGTCCCATGCGGTAGAAAAACT | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2156 | 7622 | 2.156098 | TGTCCCATGCGGTAGAAAAAC | 58.844 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
2157 | 7623 | 2.570415 | TGTCCCATGCGGTAGAAAAA | 57.430 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2158 | 7624 | 2.290641 | ACATGTCCCATGCGGTAGAAAA | 60.291 | 45.455 | 4.19 | 0.00 | 0.00 | 2.29 |
2159 | 7625 | 1.280710 | ACATGTCCCATGCGGTAGAAA | 59.719 | 47.619 | 4.19 | 0.00 | 0.00 | 2.52 |
2160 | 7626 | 0.908910 | ACATGTCCCATGCGGTAGAA | 59.091 | 50.000 | 4.19 | 0.00 | 0.00 | 2.10 |
2161 | 7627 | 0.177836 | CACATGTCCCATGCGGTAGA | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2162 | 7628 | 0.815213 | CCACATGTCCCATGCGGTAG | 60.815 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2163 | 7629 | 1.223211 | CCACATGTCCCATGCGGTA | 59.777 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
2164 | 7630 | 2.045045 | CCACATGTCCCATGCGGT | 60.045 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
2165 | 7631 | 0.393673 | TAACCACATGTCCCATGCGG | 60.394 | 55.000 | 9.19 | 9.19 | 0.00 | 5.69 |
2166 | 7632 | 1.016627 | CTAACCACATGTCCCATGCG | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
2167 | 7633 | 0.740737 | GCTAACCACATGTCCCATGC | 59.259 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2168 | 7634 | 2.127271 | TGCTAACCACATGTCCCATG | 57.873 | 50.000 | 0.00 | 2.77 | 0.00 | 3.66 |
2169 | 7635 | 2.897271 | TTGCTAACCACATGTCCCAT | 57.103 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2170 | 7636 | 2.666272 | TTTGCTAACCACATGTCCCA | 57.334 | 45.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2171 | 7637 | 5.652994 | TTATTTTGCTAACCACATGTCCC | 57.347 | 39.130 | 0.00 | 0.00 | 0.00 | 4.46 |
2172 | 7638 | 7.954788 | TTTTTATTTTGCTAACCACATGTCC | 57.045 | 32.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2196 | 7662 | 8.618677 | CGGTTAGAAAAACTCCTTACTCTTTTT | 58.381 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2197 | 7663 | 7.772292 | ACGGTTAGAAAAACTCCTTACTCTTTT | 59.228 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2198 | 7664 | 7.278135 | ACGGTTAGAAAAACTCCTTACTCTTT | 58.722 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2199 | 7665 | 6.824553 | ACGGTTAGAAAAACTCCTTACTCTT | 58.175 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2200 | 7666 | 6.416631 | ACGGTTAGAAAAACTCCTTACTCT | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
2201 | 7667 | 8.768957 | AATACGGTTAGAAAAACTCCTTACTC | 57.231 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
2202 | 7668 | 9.565090 | AAAATACGGTTAGAAAAACTCCTTACT | 57.435 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2203 | 7669 | 9.817365 | GAAAATACGGTTAGAAAAACTCCTTAC | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
2204 | 7670 | 9.002600 | GGAAAATACGGTTAGAAAAACTCCTTA | 57.997 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2205 | 7671 | 7.040201 | GGGAAAATACGGTTAGAAAAACTCCTT | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2206 | 7672 | 6.432162 | GGGAAAATACGGTTAGAAAAACTCCT | 59.568 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
2207 | 7673 | 6.432162 | AGGGAAAATACGGTTAGAAAAACTCC | 59.568 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2208 | 7674 | 7.444629 | AGGGAAAATACGGTTAGAAAAACTC | 57.555 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2209 | 7675 | 8.922931 | TTAGGGAAAATACGGTTAGAAAAACT | 57.077 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
2215 | 7681 | 8.579863 | GCTAGTATTAGGGAAAATACGGTTAGA | 58.420 | 37.037 | 0.00 | 0.00 | 43.87 | 2.10 |
2216 | 7682 | 8.362639 | TGCTAGTATTAGGGAAAATACGGTTAG | 58.637 | 37.037 | 0.00 | 0.00 | 43.87 | 2.34 |
2217 | 7683 | 8.248904 | TGCTAGTATTAGGGAAAATACGGTTA | 57.751 | 34.615 | 0.00 | 0.00 | 43.87 | 2.85 |
2218 | 7684 | 7.070322 | TCTGCTAGTATTAGGGAAAATACGGTT | 59.930 | 37.037 | 0.00 | 0.00 | 43.87 | 4.44 |
2219 | 7685 | 6.552350 | TCTGCTAGTATTAGGGAAAATACGGT | 59.448 | 38.462 | 0.00 | 0.00 | 43.87 | 4.83 |
2220 | 7686 | 6.989659 | TCTGCTAGTATTAGGGAAAATACGG | 58.010 | 40.000 | 0.00 | 0.00 | 43.87 | 4.02 |
2221 | 7687 | 7.883217 | TCTCTGCTAGTATTAGGGAAAATACG | 58.117 | 38.462 | 0.00 | 0.00 | 43.87 | 3.06 |
2228 | 7694 | 9.036980 | GGAAATAATCTCTGCTAGTATTAGGGA | 57.963 | 37.037 | 0.00 | 0.00 | 0.00 | 4.20 |
2229 | 7695 | 8.816894 | TGGAAATAATCTCTGCTAGTATTAGGG | 58.183 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
2234 | 7700 | 9.905713 | TGTTTTGGAAATAATCTCTGCTAGTAT | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
2235 | 7701 | 9.383519 | CTGTTTTGGAAATAATCTCTGCTAGTA | 57.616 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2236 | 7702 | 7.148171 | GCTGTTTTGGAAATAATCTCTGCTAGT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2237 | 7703 | 7.192232 | GCTGTTTTGGAAATAATCTCTGCTAG | 58.808 | 38.462 | 0.00 | 0.00 | 0.00 | 3.42 |
2238 | 7704 | 6.095440 | GGCTGTTTTGGAAATAATCTCTGCTA | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 3.49 |
2239 | 7705 | 5.105595 | GGCTGTTTTGGAAATAATCTCTGCT | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2240 | 7706 | 5.105063 | GGCTGTTTTGGAAATAATCTCTGC | 58.895 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2241 | 7707 | 5.185635 | TGGGCTGTTTTGGAAATAATCTCTG | 59.814 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2268 | 7771 | 0.721718 | GTGCATGTGAAGCGGTAGAC | 59.278 | 55.000 | 0.00 | 0.00 | 33.85 | 2.59 |
2311 | 7814 | 0.238289 | GCATTGACTGGGTTGTGACG | 59.762 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2339 | 7842 | 0.605319 | GTGTGACCGATTGCCCTCAA | 60.605 | 55.000 | 0.00 | 0.00 | 36.51 | 3.02 |
2345 | 7848 | 3.047280 | TGGCGTGTGACCGATTGC | 61.047 | 61.111 | 0.00 | 0.00 | 0.00 | 3.56 |
2396 | 7899 | 4.308899 | AGACTAGCTAAATACCTGTGCG | 57.691 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
2401 | 7904 | 9.091220 | CCCACTAATTAGACTAGCTAAATACCT | 57.909 | 37.037 | 19.38 | 0.00 | 42.10 | 3.08 |
2444 | 7947 | 1.073964 | CCATGCGACTGTCAACTCAG | 58.926 | 55.000 | 8.73 | 0.00 | 40.80 | 3.35 |
2460 | 7963 | 8.450578 | TTGATTCTAAATAGAACATTCGCCAT | 57.549 | 30.769 | 5.07 | 0.00 | 44.30 | 4.40 |
2462 | 7965 | 9.736023 | AATTTGATTCTAAATAGAACATTCGCC | 57.264 | 29.630 | 5.07 | 0.00 | 44.30 | 5.54 |
2492 | 7995 | 0.892755 | TGCAGGTACTACCAACTCCG | 59.107 | 55.000 | 8.01 | 0.00 | 41.95 | 4.63 |
2564 | 8068 | 2.584835 | AGTTTAGCCCAATGAGCACA | 57.415 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2616 | 8122 | 0.304705 | GCGTCTCTTTGTGTGGTGTG | 59.695 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2675 | 8181 | 6.986904 | AAAGGACGGAGATACTGAAAATTC | 57.013 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2684 | 8190 | 5.203060 | AGATTGCTAAAGGACGGAGATAC | 57.797 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2761 | 8270 | 2.230508 | ACTGCAACATCAGAAGCAATGG | 59.769 | 45.455 | 0.00 | 0.00 | 36.44 | 3.16 |
3007 | 8516 | 8.440771 | CCTTTAGTATCTCCTCCACCAAATATT | 58.559 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
3044 | 8553 | 9.979578 | CAGACAGCAATTAGAGAGAAGTAATAT | 57.020 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3729 | 9240 | 4.801330 | ATTCGTGGTGAGTCTGTATTCA | 57.199 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
3918 | 9429 | 6.434596 | TGAGTCAATTTCAAAATACGTGTGG | 58.565 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3999 | 9510 | 7.040062 | CCAACATTCTAAACCAGTGTATCCAAA | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 3.28 |
4011 | 9522 | 7.336931 | ACATACAGATCACCAACATTCTAAACC | 59.663 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
4083 | 9594 | 4.269603 | GGAACACATTCATCACTCTCATCG | 59.730 | 45.833 | 0.00 | 0.00 | 36.46 | 3.84 |
4115 | 9626 | 4.423732 | GGAACACATTAAAATGCGAGCAT | 58.576 | 39.130 | 4.52 | 4.52 | 40.04 | 3.79 |
4121 | 9632 | 3.507786 | GGACCGGAACACATTAAAATGC | 58.492 | 45.455 | 9.46 | 0.00 | 40.04 | 3.56 |
4234 | 9746 | 1.963172 | AACAGACCGGACAGGAAAAC | 58.037 | 50.000 | 9.46 | 0.00 | 45.00 | 2.43 |
4303 | 9815 | 5.232463 | CAAAAACTAATGCTGGTGCTTCAT | 58.768 | 37.500 | 0.00 | 0.00 | 40.48 | 2.57 |
4314 | 9826 | 2.416202 | GCCACATGCCAAAAACTAATGC | 59.584 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
4591 | 10103 | 2.131854 | TCCTTTTCTTCCACTCCACCA | 58.868 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
4745 | 10259 | 4.974399 | AGGGAAGTTGTTACCTGAAGAAG | 58.026 | 43.478 | 0.00 | 0.00 | 46.55 | 2.85 |
4932 | 10447 | 5.241728 | GGATTAGCACATTTTAGGTCCATCC | 59.758 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4940 | 10455 | 7.944061 | TGATGGATTGGATTAGCACATTTTAG | 58.056 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
4944 | 10459 | 6.551975 | TCATTGATGGATTGGATTAGCACATT | 59.448 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
4994 | 10509 | 6.106648 | TCACCAAAAATTCATGCCATACAA | 57.893 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.