Multiple sequence alignment - TraesCS6B01G300000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G300000 chr6B 100.000 3642 0 0 1 3642 538057222 538060863 0.000000e+00 6726.0
1 TraesCS6B01G300000 chr6B 91.391 151 13 0 2192 2342 538059266 538059416 1.330000e-49 207.0
2 TraesCS6B01G300000 chr6B 91.391 151 13 0 2045 2195 538059413 538059563 1.330000e-49 207.0
3 TraesCS6B01G300000 chr6B 92.453 106 8 0 405 510 403189256 403189151 6.300000e-33 152.0
4 TraesCS6B01G300000 chr6D 94.817 2431 79 30 1249 3642 356724375 356726795 0.000000e+00 3747.0
5 TraesCS6B01G300000 chr6D 89.056 466 22 18 1 437 356722745 356723210 5.320000e-153 551.0
6 TraesCS6B01G300000 chr6D 85.413 569 29 26 430 987 356723399 356723924 3.200000e-150 542.0
7 TraesCS6B01G300000 chr6D 93.377 151 10 0 2045 2195 356725333 356725483 1.320000e-54 224.0
8 TraesCS6B01G300000 chr6D 92.053 151 12 0 2192 2342 356725186 356725336 2.850000e-51 213.0
9 TraesCS6B01G300000 chr6A 91.814 2553 105 39 680 3179 499199008 499201509 0.000000e+00 3461.0
10 TraesCS6B01G300000 chr6A 89.146 562 22 17 1 555 499198424 499198953 0.000000e+00 664.0
11 TraesCS6B01G300000 chr6A 89.009 464 36 6 3178 3639 499201549 499201999 8.830000e-156 560.0
12 TraesCS6B01G300000 chr6A 90.066 151 15 0 2192 2342 499200369 499200519 2.870000e-46 196.0
13 TraesCS6B01G300000 chr6A 90.066 151 12 3 2045 2192 499200516 499200666 3.710000e-45 193.0
14 TraesCS6B01G300000 chr6A 96.078 51 2 0 603 653 499198954 499199004 2.330000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G300000 chr6B 538057222 538060863 3641 False 2380.0 6726 94.260667 1 3642 3 chr6B.!!$F1 3641
1 TraesCS6B01G300000 chr6D 356722745 356726795 4050 False 1055.4 3747 90.943200 1 3642 5 chr6D.!!$F1 3641
2 TraesCS6B01G300000 chr6A 499198424 499201999 3575 False 859.7 3461 91.029833 1 3639 6 chr6A.!!$F1 3638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 891 0.103937 CTGCCCATCTTCTCGGAGAC 59.896 60.0 7.33 0.0 0.0 3.36 F
1234 1490 0.103208 ACCTCGTCTCGCATCAATCC 59.897 55.0 0.00 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 2262 0.526096 CAAGCTGGCAACACACACAC 60.526 55.0 0.0 0.0 46.17 3.82 R
2981 3483 1.102978 ACCCACGGAAAGCATAATGC 58.897 50.0 0.0 0.0 45.46 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.383880 GGGTAACTGGTAGATCAAAGGGAC 60.384 50.000 0.00 0.00 0.00 4.46
103 104 7.834881 AGGATCATCATCATAATGCAAAACT 57.165 32.000 0.00 0.00 32.58 2.66
295 299 4.080243 TGAGAACCTCCACAACCTGTTTTA 60.080 41.667 0.00 0.00 0.00 1.52
299 303 7.064229 AGAACCTCCACAACCTGTTTTATTTA 58.936 34.615 0.00 0.00 0.00 1.40
301 305 7.849322 ACCTCCACAACCTGTTTTATTTATT 57.151 32.000 0.00 0.00 0.00 1.40
302 306 8.257602 ACCTCCACAACCTGTTTTATTTATTT 57.742 30.769 0.00 0.00 0.00 1.40
343 377 3.307782 GCAATGCATCCGAAAATGAAAGG 59.692 43.478 0.00 0.00 0.00 3.11
346 380 2.298446 TGCATCCGAAAATGAAAGGCAA 59.702 40.909 0.00 0.00 0.00 4.52
440 670 0.114168 ACAGGACACTCTCAGAGCCT 59.886 55.000 0.00 0.00 32.04 4.58
575 809 2.380410 CCTTCGTGGTCGCCTTTCG 61.380 63.158 0.00 0.00 40.15 3.46
606 840 1.435515 CTCTCCTTCCTTCCTCGCG 59.564 63.158 0.00 0.00 0.00 5.87
607 841 1.001269 TCTCCTTCCTTCCTCGCGA 60.001 57.895 9.26 9.26 0.00 5.87
653 887 2.203126 GGCTGCCCATCTTCTCGG 60.203 66.667 7.66 0.00 0.00 4.63
656 890 1.680522 GCTGCCCATCTTCTCGGAGA 61.681 60.000 2.97 2.97 0.00 3.71
657 891 0.103937 CTGCCCATCTTCTCGGAGAC 59.896 60.000 7.33 0.00 0.00 3.36
748 1000 0.620556 TCCAGCCCACAAAGAGGATC 59.379 55.000 0.00 0.00 0.00 3.36
768 1020 3.756727 GCAGCCAGCCAAAGAGCC 61.757 66.667 0.00 0.00 37.23 4.70
769 1021 2.282674 CAGCCAGCCAAAGAGCCA 60.283 61.111 0.00 0.00 0.00 4.75
770 1022 1.904865 CAGCCAGCCAAAGAGCCAA 60.905 57.895 0.00 0.00 0.00 4.52
772 1024 2.935740 GCCAGCCAAAGAGCCAACC 61.936 63.158 0.00 0.00 0.00 3.77
773 1025 2.629656 CCAGCCAAAGAGCCAACCG 61.630 63.158 0.00 0.00 0.00 4.44
774 1026 2.985847 AGCCAAAGAGCCAACCGC 60.986 61.111 0.00 0.00 37.98 5.68
857 1113 5.291614 CCATCAATTGAAAAATAGCCGTTGG 59.708 40.000 13.09 7.05 0.00 3.77
874 1130 3.190327 CGTTGGCTTGTAAATCCATCACA 59.810 43.478 0.00 0.00 42.45 3.58
885 1141 1.068083 CCATCACACGGGATCGGAG 59.932 63.158 0.00 0.00 41.39 4.63
966 1222 3.386078 GCTGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
967 1223 4.501229 GCTGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
968 1224 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
969 1225 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
970 1226 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
971 1227 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
972 1228 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
973 1229 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
974 1230 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
975 1231 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
976 1232 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
977 1233 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
978 1234 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
979 1235 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1161 1417 2.037367 TGCTGCTACCTCCTCCGT 59.963 61.111 0.00 0.00 0.00 4.69
1234 1490 0.103208 ACCTCGTCTCGCATCAATCC 59.897 55.000 0.00 0.00 0.00 3.01
1430 1893 1.210967 CCGCCCTCCAGGTAATTAACA 59.789 52.381 2.78 0.00 38.26 2.41
1432 1895 2.681344 CGCCCTCCAGGTAATTAACAAC 59.319 50.000 2.78 0.00 38.26 3.32
1450 1919 3.140144 ACAACCCCTTCTTCCAAGATTCA 59.860 43.478 0.00 0.00 34.49 2.57
1457 1926 4.390297 CCTTCTTCCAAGATTCACTTCGTC 59.610 45.833 0.00 0.00 36.61 4.20
1458 1927 3.926616 TCTTCCAAGATTCACTTCGTCC 58.073 45.455 0.00 0.00 36.61 4.79
1459 1928 2.762535 TCCAAGATTCACTTCGTCCC 57.237 50.000 0.00 0.00 36.61 4.46
1460 1929 1.067142 TCCAAGATTCACTTCGTCCCG 60.067 52.381 0.00 0.00 36.61 5.14
1463 1932 1.254026 AGATTCACTTCGTCCCGTGA 58.746 50.000 0.00 0.00 38.30 4.35
1480 1949 2.100916 CGTGATGGGTTACGATTCCTCT 59.899 50.000 0.00 0.00 42.54 3.69
1481 1950 3.458189 GTGATGGGTTACGATTCCTCTG 58.542 50.000 0.00 0.00 0.00 3.35
1485 1960 2.093658 TGGGTTACGATTCCTCTGCTTC 60.094 50.000 0.00 0.00 0.00 3.86
1508 1991 7.689953 TCTTCTTACTAAACGTGTGTTTCTC 57.310 36.000 0.00 0.00 44.94 2.87
1613 2096 0.313672 GCATCGGCAACAAGGTCAAA 59.686 50.000 0.00 0.00 40.72 2.69
1743 2226 5.127356 GGCCAGAGTTGACTAGTAACAGTAT 59.873 44.000 0.00 0.00 0.00 2.12
1776 2259 0.607489 GGCTGTTCTGATGCCTGTGT 60.607 55.000 8.84 0.00 43.05 3.72
1778 2261 1.610102 GCTGTTCTGATGCCTGTGTCT 60.610 52.381 0.00 0.00 0.00 3.41
1779 2262 2.074576 CTGTTCTGATGCCTGTGTCTG 58.925 52.381 0.00 0.00 0.00 3.51
1804 2287 1.610038 TGTGTTGCCAGCTTGAATCTG 59.390 47.619 0.00 0.00 0.00 2.90
1936 2419 2.184579 GGCCTTTCGTCCGAGGAG 59.815 66.667 0.00 0.00 34.91 3.69
1980 2463 1.347707 TGAAGAAGAACCAGATGCGGT 59.652 47.619 0.00 0.00 42.71 5.68
1988 2471 2.267351 CCAGATGCGGTTGTTGGCA 61.267 57.895 0.00 0.00 44.29 4.92
2033 2516 3.221771 CAGACACTGGATTTGGAAACCA 58.778 45.455 0.00 0.00 0.00 3.67
2096 2579 1.482182 CAATGGATCGGAGTGAGGTCA 59.518 52.381 0.00 0.00 0.00 4.02
2180 2663 5.050769 GCTGACTGTGATGTTGAATATACCG 60.051 44.000 0.00 0.00 0.00 4.02
2721 3207 1.272928 ACAGCCCAGAGATGAGACAGA 60.273 52.381 0.00 0.00 0.00 3.41
2942 3437 7.650834 TGCAACCATTATTTTCTTTAACTGC 57.349 32.000 0.00 0.00 0.00 4.40
3029 3531 0.100503 ACGTTTGAAGCACCAACAGC 59.899 50.000 0.00 0.00 0.00 4.40
3162 3687 6.550854 CCATTTTGTTATGACATATGGGACCT 59.449 38.462 17.70 0.00 40.79 3.85
3215 3781 4.094887 ACAAACTGCAGTGTTAGTGTTCAG 59.905 41.667 22.49 1.59 0.00 3.02
3220 3786 3.871006 TGCAGTGTTAGTGTTCAGTCTTG 59.129 43.478 0.00 0.00 0.00 3.02
3232 3799 5.795441 GTGTTCAGTCTTGTTTCTGTGTTTC 59.205 40.000 0.00 0.00 33.89 2.78
3328 3895 5.663795 ATGCATTAGATACTTGTTCTGCG 57.336 39.130 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.482386 CATGTGCTCTTCACTTCCATTTG 58.518 43.478 0.00 0.00 45.81 2.32
103 104 8.850156 CCTTCTCAAGTCTTTTTATTTCCTTCA 58.150 33.333 0.00 0.00 0.00 3.02
115 116 6.842676 AGTATTTGTCCCTTCTCAAGTCTTT 58.157 36.000 0.00 0.00 0.00 2.52
299 303 6.632909 TGCATTAGCTGACTTGCAAATAAAT 58.367 32.000 4.43 0.00 41.76 1.40
301 305 5.641783 TGCATTAGCTGACTTGCAAATAA 57.358 34.783 4.43 0.00 41.76 1.40
346 380 6.375174 TGACTCACAAATATGCTTGCAGTATT 59.625 34.615 0.87 3.65 0.00 1.89
575 809 2.103340 GAGAGGGTTCGAGCGAGC 59.897 66.667 0.00 0.00 0.00 5.03
637 871 1.227497 CTCCGAGAAGATGGGCAGC 60.227 63.158 0.00 0.00 0.00 5.25
657 891 1.797933 CTCAGTTGAGACGACGCCG 60.798 63.158 2.97 0.00 44.74 6.46
658 892 1.444553 CCTCAGTTGAGACGACGCC 60.445 63.158 10.64 0.00 44.74 5.68
659 893 0.039437 TTCCTCAGTTGAGACGACGC 60.039 55.000 10.64 0.00 44.74 5.19
660 894 2.520979 GATTCCTCAGTTGAGACGACG 58.479 52.381 10.64 0.00 44.74 5.12
661 895 2.161808 TCGATTCCTCAGTTGAGACGAC 59.838 50.000 10.64 0.00 44.74 4.34
662 896 2.420372 CTCGATTCCTCAGTTGAGACGA 59.580 50.000 10.64 12.98 44.74 4.20
663 897 2.478709 CCTCGATTCCTCAGTTGAGACG 60.479 54.545 10.64 10.03 44.74 4.18
664 898 2.737039 GCCTCGATTCCTCAGTTGAGAC 60.737 54.545 10.64 0.00 44.74 3.36
665 899 1.478510 GCCTCGATTCCTCAGTTGAGA 59.521 52.381 10.64 0.00 44.74 3.27
666 900 1.480137 AGCCTCGATTCCTCAGTTGAG 59.520 52.381 2.09 2.09 41.71 3.02
667 901 1.478510 GAGCCTCGATTCCTCAGTTGA 59.521 52.381 0.00 0.00 0.00 3.18
668 902 1.800655 CGAGCCTCGATTCCTCAGTTG 60.801 57.143 8.82 0.00 43.74 3.16
669 903 0.457851 CGAGCCTCGATTCCTCAGTT 59.542 55.000 8.82 0.00 43.74 3.16
670 904 0.394488 TCGAGCCTCGATTCCTCAGT 60.394 55.000 13.77 0.00 44.82 3.41
671 905 2.409399 TCGAGCCTCGATTCCTCAG 58.591 57.895 13.77 0.00 44.82 3.35
672 906 4.657952 TCGAGCCTCGATTCCTCA 57.342 55.556 13.77 0.00 44.82 3.86
794 1046 1.700186 AGAGAAACCTCACTTGACCCC 59.300 52.381 0.00 0.00 33.16 4.95
857 1113 2.097466 CCCGTGTGATGGATTTACAAGC 59.903 50.000 0.00 0.00 0.00 4.01
861 1117 2.800544 CGATCCCGTGTGATGGATTTAC 59.199 50.000 0.00 0.00 41.44 2.01
865 1121 0.759060 TCCGATCCCGTGTGATGGAT 60.759 55.000 0.00 0.00 44.05 3.41
885 1141 2.279784 CGAGATGAAGGCCGCCTC 60.280 66.667 13.72 7.14 30.89 4.70
966 1222 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
967 1223 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
968 1224 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
969 1225 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
970 1226 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
971 1227 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
972 1228 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
973 1229 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
974 1230 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
975 1231 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
976 1232 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
977 1233 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
978 1234 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
979 1235 5.279406 CCATCTCTCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
1086 1342 1.200020 CCATCTTTGGTTTCCTCGTGC 59.800 52.381 0.00 0.00 38.30 5.34
1134 1390 1.086634 GGTAGCAGCAGAAGAAGCGG 61.087 60.000 0.00 0.00 37.01 5.52
1135 1391 0.108424 AGGTAGCAGCAGAAGAAGCG 60.108 55.000 0.00 0.00 37.01 4.68
1210 1466 3.957435 ATGCGAGACGAGGTGGGGA 62.957 63.158 0.00 0.00 0.00 4.81
1215 1471 0.103208 GGATTGATGCGAGACGAGGT 59.897 55.000 0.00 0.00 0.00 3.85
1234 1490 6.390987 GCAAGAAGCAAAGATGAGATTTTG 57.609 37.500 0.00 0.00 44.79 2.44
1430 1893 3.399305 AGTGAATCTTGGAAGAAGGGGTT 59.601 43.478 0.00 0.00 38.77 4.11
1432 1895 3.728385 AGTGAATCTTGGAAGAAGGGG 57.272 47.619 0.00 0.00 38.77 4.79
1458 1927 1.138266 AGGAATCGTAACCCATCACGG 59.862 52.381 0.00 0.00 38.66 4.94
1459 1928 2.100916 AGAGGAATCGTAACCCATCACG 59.899 50.000 0.00 0.00 39.48 4.35
1460 1929 3.458189 CAGAGGAATCGTAACCCATCAC 58.542 50.000 0.00 0.00 0.00 3.06
1463 1932 2.119495 AGCAGAGGAATCGTAACCCAT 58.881 47.619 0.00 0.00 0.00 4.00
1473 1942 6.814146 CGTTTAGTAAGAAGAAGCAGAGGAAT 59.186 38.462 0.00 0.00 0.00 3.01
1475 1944 5.243283 ACGTTTAGTAAGAAGAAGCAGAGGA 59.757 40.000 0.00 0.00 0.00 3.71
1476 1945 5.346281 CACGTTTAGTAAGAAGAAGCAGAGG 59.654 44.000 0.00 0.00 0.00 3.69
1480 1949 5.353938 ACACACGTTTAGTAAGAAGAAGCA 58.646 37.500 0.00 0.00 0.00 3.91
1481 1950 5.902051 ACACACGTTTAGTAAGAAGAAGC 57.098 39.130 0.00 0.00 0.00 3.86
1485 1960 6.345565 CCGAGAAACACACGTTTAGTAAGAAG 60.346 42.308 0.00 0.00 45.40 2.85
1508 1991 3.114616 CACTCGAACTGCAGGCCG 61.115 66.667 19.93 19.75 0.00 6.13
1613 2096 1.257750 TGAGCATGGTGTAGGCGAGT 61.258 55.000 0.00 0.00 41.91 4.18
1743 2226 2.831685 ACAGCCGTTCACATCAGTAA 57.168 45.000 0.00 0.00 0.00 2.24
1776 2259 1.375853 GCTGGCAACACACACACAGA 61.376 55.000 0.00 0.00 46.17 3.41
1778 2261 0.964860 AAGCTGGCAACACACACACA 60.965 50.000 0.00 0.00 46.17 3.72
1779 2262 0.526096 CAAGCTGGCAACACACACAC 60.526 55.000 0.00 0.00 46.17 3.82
1804 2287 2.405172 GTGGAGAAGAAGTTCACCGTC 58.595 52.381 5.50 0.00 44.24 4.79
1856 2339 4.828296 CATGTGGCAGGGGAGGGC 62.828 72.222 0.00 0.00 0.00 5.19
1936 2419 5.772004 TCCTCTCTAGGCTCCATAATATCC 58.228 45.833 0.00 0.00 43.31 2.59
1980 2463 2.892334 GAAGCGTCGCTGCCAACAA 61.892 57.895 22.50 0.00 39.62 2.83
1988 2471 0.529337 CCATGATCAGAAGCGTCGCT 60.529 55.000 15.47 15.47 42.56 4.93
2033 2516 3.197766 TCTGATTCACCGCCTACAATTCT 59.802 43.478 0.00 0.00 0.00 2.40
2096 2579 7.342284 AGAGGATTCTGAAATTCTTGATGCAAT 59.658 33.333 0.00 0.00 30.32 3.56
2180 2663 4.092091 GTCTGATTCACCGAAGTCATCAAC 59.908 45.833 0.00 0.00 0.00 3.18
2238 2721 4.335416 TGAAATTCTTGATCCACAGACCC 58.665 43.478 0.00 0.00 0.00 4.46
2356 2842 2.100197 TCCGATGTCTCGTGAATTCCT 58.900 47.619 2.27 0.00 43.49 3.36
2464 2950 3.558746 CCTTCAACACTGGAGATGCTTCT 60.559 47.826 0.96 0.96 27.97 2.85
2721 3207 5.593679 ACAAATCTGCCTACTGTATACGT 57.406 39.130 0.00 0.00 0.00 3.57
2877 3364 9.182214 AGATAATGAGCAGTTAAACAATGACAT 57.818 29.630 0.00 0.00 0.00 3.06
2942 3437 1.337260 CCCAGTCTCAGAACCTCAACG 60.337 57.143 0.00 0.00 0.00 4.10
2981 3483 1.102978 ACCCACGGAAAGCATAATGC 58.897 50.000 0.00 0.00 45.46 3.56
3029 3531 6.102663 CACTCTTGTAAGACTACCATCCTTG 58.897 44.000 0.00 0.00 0.00 3.61
3074 3595 1.117994 TGCCAGTCTGCTAGAGATGG 58.882 55.000 0.00 10.52 34.71 3.51
3162 3687 4.858850 ACCATTAAGATTGATGACTGCCA 58.141 39.130 0.00 0.00 0.00 4.92
3215 3781 6.811170 TCCAATTTGAAACACAGAAACAAGAC 59.189 34.615 0.00 0.00 0.00 3.01
3220 3786 6.564328 AGTCTCCAATTTGAAACACAGAAAC 58.436 36.000 0.00 0.00 0.00 2.78
3232 3799 5.940470 ACCAACTAGCTAAGTCTCCAATTTG 59.060 40.000 0.00 0.00 37.50 2.32
3328 3895 2.880890 GGATTGGGTGTGTATGCAGATC 59.119 50.000 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.