Multiple sequence alignment - TraesCS6B01G298900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G298900 chr6B 100.000 3674 0 0 1 3674 536832025 536835698 0.000000 6785.0
1 TraesCS6B01G298900 chr5A 98.777 3598 38 3 82 3674 637094972 637098568 0.000000 6396.0
2 TraesCS6B01G298900 chr3B 98.804 3594 39 1 85 3674 344139927 344143520 0.000000 6396.0
3 TraesCS6B01G298900 chr7B 98.777 3597 38 2 84 3674 122631934 122628338 0.000000 6394.0
4 TraesCS6B01G298900 chr7B 97.886 2886 34 11 85 2943 476789834 476792719 0.000000 4966.0
5 TraesCS6B01G298900 chr4B 98.720 3594 42 1 85 3674 451444013 451447606 0.000000 6379.0
6 TraesCS6B01G298900 chr4B 100.000 32 0 0 1 32 399822219 399822188 0.000040 60.2
7 TraesCS6B01G298900 chr1A 98.720 3594 42 1 85 3674 500066715 500070308 0.000000 6379.0
8 TraesCS6B01G298900 chr1A 98.147 3615 42 2 85 3674 582535567 582539181 0.000000 6281.0
9 TraesCS6B01G298900 chr2A 98.333 3600 50 4 84 3674 72960989 72957391 0.000000 6307.0
10 TraesCS6B01G298900 chr2A 97.059 34 1 0 1 34 460146052 460146085 0.000143 58.4
11 TraesCS6B01G298900 chr3A 98.119 3616 42 3 85 3674 57270160 57273775 0.000000 6277.0
12 TraesCS6B01G298900 chr7A 98.844 3286 36 2 391 3674 652475322 652478607 0.000000 5856.0
13 TraesCS6B01G298900 chr2B 97.731 2468 29 4 82 2522 165282062 165279595 0.000000 4222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G298900 chr6B 536832025 536835698 3673 False 6785 6785 100.000 1 3674 1 chr6B.!!$F1 3673
1 TraesCS6B01G298900 chr5A 637094972 637098568 3596 False 6396 6396 98.777 82 3674 1 chr5A.!!$F1 3592
2 TraesCS6B01G298900 chr3B 344139927 344143520 3593 False 6396 6396 98.804 85 3674 1 chr3B.!!$F1 3589
3 TraesCS6B01G298900 chr7B 122628338 122631934 3596 True 6394 6394 98.777 84 3674 1 chr7B.!!$R1 3590
4 TraesCS6B01G298900 chr7B 476789834 476792719 2885 False 4966 4966 97.886 85 2943 1 chr7B.!!$F1 2858
5 TraesCS6B01G298900 chr4B 451444013 451447606 3593 False 6379 6379 98.720 85 3674 1 chr4B.!!$F1 3589
6 TraesCS6B01G298900 chr1A 500066715 500070308 3593 False 6379 6379 98.720 85 3674 1 chr1A.!!$F1 3589
7 TraesCS6B01G298900 chr1A 582535567 582539181 3614 False 6281 6281 98.147 85 3674 1 chr1A.!!$F2 3589
8 TraesCS6B01G298900 chr2A 72957391 72960989 3598 True 6307 6307 98.333 84 3674 1 chr2A.!!$R1 3590
9 TraesCS6B01G298900 chr3A 57270160 57273775 3615 False 6277 6277 98.119 85 3674 1 chr3A.!!$F1 3589
10 TraesCS6B01G298900 chr7A 652475322 652478607 3285 False 5856 5856 98.844 391 3674 1 chr7A.!!$F1 3283
11 TraesCS6B01G298900 chr2B 165279595 165282062 2467 True 4222 4222 97.731 82 2522 1 chr2B.!!$R1 2440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.096976 CACCGAACGCAGCCTTATTG 59.903 55.000 0.00 0.00 0.00 1.90 F
41 42 0.107214 CGCAGCCTTATTGGGGAGAA 60.107 55.000 0.00 0.00 36.00 2.87 F
43 44 1.340991 GCAGCCTTATTGGGGAGAACA 60.341 52.381 0.00 0.00 36.00 3.18 F
272 273 1.745115 GTGCCACGCTAGCCAATCA 60.745 57.895 9.66 0.00 0.00 2.57 F
583 651 1.977854 TGTTACTCACCATGGAGCAGT 59.022 47.619 21.47 17.95 38.50 4.40 F
1724 1794 4.158025 AGAAGAGGAAGAAATGCTGCATTG 59.842 41.667 26.87 0.00 34.04 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1898 0.328258 GGGCCTCTTCTAACTGGCAA 59.672 55.000 0.84 0.0 46.53 4.52 R
2118 2188 2.759114 CTGGCCTGGGTGATGTGT 59.241 61.111 3.32 0.0 0.00 3.72 R
2164 2234 7.548097 TCTGTACACTCAACAATTATCCTCTC 58.452 38.462 0.00 0.0 0.00 3.20 R
2389 2459 6.919662 GGCACATCTACACCATATTTTTCATG 59.080 38.462 0.00 0.0 0.00 3.07 R
2435 2505 7.121759 ACACAGCATCAATAGCTATGTTCTTTT 59.878 33.333 7.09 0.0 46.67 2.27 R
3316 3388 1.933181 TCAGTCTTGCAGTTTGTGTCG 59.067 47.619 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.741985 TGCGATTCCTGTGCACCG 60.742 61.111 15.69 8.02 32.86 4.94
20 21 2.434185 GCGATTCCTGTGCACCGA 60.434 61.111 15.69 7.03 0.00 4.69
21 22 2.032634 GCGATTCCTGTGCACCGAA 61.033 57.895 15.69 16.00 0.00 4.30
22 23 1.787847 CGATTCCTGTGCACCGAAC 59.212 57.895 15.69 9.54 0.00 3.95
23 24 1.787847 GATTCCTGTGCACCGAACG 59.212 57.895 15.69 0.00 0.00 3.95
24 25 2.240612 GATTCCTGTGCACCGAACGC 62.241 60.000 15.69 8.25 0.00 4.84
25 26 3.741830 TTCCTGTGCACCGAACGCA 62.742 57.895 15.69 0.00 36.94 5.24
26 27 3.716006 CCTGTGCACCGAACGCAG 61.716 66.667 15.69 2.57 43.65 5.18
27 28 4.374702 CTGTGCACCGAACGCAGC 62.375 66.667 15.69 0.00 40.78 5.25
30 31 4.927782 TGCACCGAACGCAGCCTT 62.928 61.111 0.00 0.00 33.55 4.35
31 32 2.740826 GCACCGAACGCAGCCTTA 60.741 61.111 0.00 0.00 0.00 2.69
32 33 2.106683 GCACCGAACGCAGCCTTAT 61.107 57.895 0.00 0.00 0.00 1.73
33 34 1.644786 GCACCGAACGCAGCCTTATT 61.645 55.000 0.00 0.00 0.00 1.40
34 35 0.096976 CACCGAACGCAGCCTTATTG 59.903 55.000 0.00 0.00 0.00 1.90
35 36 1.024579 ACCGAACGCAGCCTTATTGG 61.025 55.000 0.00 0.00 39.35 3.16
36 37 1.714899 CCGAACGCAGCCTTATTGGG 61.715 60.000 0.00 0.00 36.00 4.12
37 38 1.714899 CGAACGCAGCCTTATTGGGG 61.715 60.000 0.00 0.00 36.00 4.96
38 39 0.393808 GAACGCAGCCTTATTGGGGA 60.394 55.000 0.00 0.00 36.00 4.81
39 40 0.394352 AACGCAGCCTTATTGGGGAG 60.394 55.000 0.00 0.00 36.00 4.30
40 41 1.271840 ACGCAGCCTTATTGGGGAGA 61.272 55.000 0.00 0.00 36.00 3.71
41 42 0.107214 CGCAGCCTTATTGGGGAGAA 60.107 55.000 0.00 0.00 36.00 2.87
42 43 1.393603 GCAGCCTTATTGGGGAGAAC 58.606 55.000 0.00 0.00 36.00 3.01
43 44 1.340991 GCAGCCTTATTGGGGAGAACA 60.341 52.381 0.00 0.00 36.00 3.18
44 45 2.883888 GCAGCCTTATTGGGGAGAACAA 60.884 50.000 0.00 0.00 36.00 2.83
45 46 2.755103 CAGCCTTATTGGGGAGAACAAC 59.245 50.000 0.00 0.00 36.00 3.32
46 47 2.378547 AGCCTTATTGGGGAGAACAACA 59.621 45.455 0.00 0.00 36.00 3.33
47 48 3.011708 AGCCTTATTGGGGAGAACAACAT 59.988 43.478 0.00 0.00 36.00 2.71
48 49 3.131046 GCCTTATTGGGGAGAACAACATG 59.869 47.826 0.00 0.00 36.00 3.21
49 50 4.344104 CCTTATTGGGGAGAACAACATGT 58.656 43.478 0.00 0.00 0.00 3.21
50 51 5.505780 CCTTATTGGGGAGAACAACATGTA 58.494 41.667 0.00 0.00 0.00 2.29
51 52 5.590259 CCTTATTGGGGAGAACAACATGTAG 59.410 44.000 0.00 0.00 0.00 2.74
52 53 4.657814 ATTGGGGAGAACAACATGTAGT 57.342 40.909 0.00 0.00 0.00 2.73
53 54 4.447138 TTGGGGAGAACAACATGTAGTT 57.553 40.909 0.00 0.00 42.42 2.24
54 55 5.570205 TTGGGGAGAACAACATGTAGTTA 57.430 39.130 0.00 0.00 38.74 2.24
55 56 5.772393 TGGGGAGAACAACATGTAGTTAT 57.228 39.130 0.00 0.00 38.74 1.89
56 57 6.134535 TGGGGAGAACAACATGTAGTTATT 57.865 37.500 0.00 0.00 38.74 1.40
57 58 5.943416 TGGGGAGAACAACATGTAGTTATTG 59.057 40.000 0.00 0.00 38.74 1.90
58 59 5.944007 GGGGAGAACAACATGTAGTTATTGT 59.056 40.000 0.00 0.00 38.74 2.71
59 60 6.093633 GGGGAGAACAACATGTAGTTATTGTC 59.906 42.308 0.00 0.00 36.49 3.18
60 61 6.879458 GGGAGAACAACATGTAGTTATTGTCT 59.121 38.462 0.00 0.00 37.16 3.41
61 62 7.148407 GGGAGAACAACATGTAGTTATTGTCTG 60.148 40.741 0.00 0.00 37.16 3.51
62 63 7.148407 GGAGAACAACATGTAGTTATTGTCTGG 60.148 40.741 0.00 0.00 37.16 3.86
63 64 7.224297 AGAACAACATGTAGTTATTGTCTGGT 58.776 34.615 0.00 0.00 38.74 4.00
64 65 8.372459 AGAACAACATGTAGTTATTGTCTGGTA 58.628 33.333 0.00 0.00 38.74 3.25
65 66 7.900782 ACAACATGTAGTTATTGTCTGGTAC 57.099 36.000 0.00 0.00 38.74 3.34
66 67 6.877322 ACAACATGTAGTTATTGTCTGGTACC 59.123 38.462 4.43 4.43 38.74 3.34
67 68 6.869206 ACATGTAGTTATTGTCTGGTACCT 57.131 37.500 14.36 0.00 0.00 3.08
68 69 6.875076 ACATGTAGTTATTGTCTGGTACCTC 58.125 40.000 14.36 4.50 0.00 3.85
69 70 6.439375 ACATGTAGTTATTGTCTGGTACCTCA 59.561 38.462 14.36 7.16 0.00 3.86
70 71 6.276832 TGTAGTTATTGTCTGGTACCTCAC 57.723 41.667 14.36 10.00 0.00 3.51
71 72 5.776208 TGTAGTTATTGTCTGGTACCTCACA 59.224 40.000 14.36 12.58 0.00 3.58
72 73 6.439375 TGTAGTTATTGTCTGGTACCTCACAT 59.561 38.462 14.36 8.25 0.00 3.21
73 74 7.616542 TGTAGTTATTGTCTGGTACCTCACATA 59.383 37.037 14.36 7.16 0.00 2.29
74 75 7.113658 AGTTATTGTCTGGTACCTCACATAG 57.886 40.000 14.36 0.41 0.00 2.23
75 76 6.668283 AGTTATTGTCTGGTACCTCACATAGT 59.332 38.462 14.36 7.53 0.00 2.12
76 77 5.599999 ATTGTCTGGTACCTCACATAGTC 57.400 43.478 14.36 0.00 0.00 2.59
77 78 3.362706 TGTCTGGTACCTCACATAGTCC 58.637 50.000 14.36 0.00 0.00 3.85
78 79 3.245479 TGTCTGGTACCTCACATAGTCCA 60.245 47.826 14.36 0.32 0.00 4.02
79 80 3.961408 GTCTGGTACCTCACATAGTCCAT 59.039 47.826 14.36 0.00 0.00 3.41
80 81 5.138276 GTCTGGTACCTCACATAGTCCATA 58.862 45.833 14.36 0.00 0.00 2.74
264 265 4.063967 CCGTCAGGTGCCACGCTA 62.064 66.667 0.00 0.00 34.58 4.26
272 273 1.745115 GTGCCACGCTAGCCAATCA 60.745 57.895 9.66 0.00 0.00 2.57
549 617 2.512286 TCCGCGTACTCGACCGAT 60.512 61.111 6.86 0.00 39.71 4.18
583 651 1.977854 TGTTACTCACCATGGAGCAGT 59.022 47.619 21.47 17.95 38.50 4.40
1067 1137 6.212888 AGTAAGGATCCATTTTGATGCAAC 57.787 37.500 15.82 0.00 35.72 4.17
1087 1157 4.647564 ACAGAACCATTGGAGATGAAGT 57.352 40.909 10.37 0.00 0.00 3.01
1724 1794 4.158025 AGAAGAGGAAGAAATGCTGCATTG 59.842 41.667 26.87 0.00 34.04 2.82
1828 1898 5.297569 ACCTGTAAAGAAGAAGCAGAAGT 57.702 39.130 0.00 0.00 0.00 3.01
2118 2188 9.467258 CAATTCAGAGAAGCTTTGTTGAATTTA 57.533 29.630 26.39 9.65 40.99 1.40
2164 2234 5.922053 TCAGGTATCACAGGAATTCAGATG 58.078 41.667 7.93 5.47 0.00 2.90
2389 2459 6.564709 TTCAGACTATAATTGATGCATGCC 57.435 37.500 16.68 0.28 0.00 4.40
2435 2505 2.224843 CCAAGTGCATGGCATATAGGGA 60.225 50.000 0.00 0.00 41.91 4.20
2611 2681 1.784358 CCCAAGATTCCATGCCATGT 58.216 50.000 3.63 0.00 0.00 3.21
2769 2841 1.547372 GCAGGTGTTGATGGATGCTTT 59.453 47.619 0.00 0.00 0.00 3.51
2842 2914 5.125417 GGCAACAACAACATATATCCACTGT 59.875 40.000 0.00 0.00 0.00 3.55
2865 2937 5.126061 GTCATTTGGCATAGTTGGTCAAGAT 59.874 40.000 0.00 0.00 30.63 2.40
3156 3228 3.900388 TGCAAATTTCCAAAATGCTGC 57.100 38.095 11.97 10.53 36.41 5.25
3543 3619 2.792370 AGAAGGAGAGGGCCAGATACTA 59.208 50.000 6.18 0.00 0.00 1.82
3613 3689 2.293122 GCAAACACATGCTGTCAACCTA 59.707 45.455 0.00 0.00 43.06 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.032634 TTCGGTGCACAGGAATCGC 61.033 57.895 20.43 0.00 0.00 4.58
4 5 1.787847 GTTCGGTGCACAGGAATCG 59.212 57.895 20.43 11.84 0.00 3.34
5 6 1.787847 CGTTCGGTGCACAGGAATC 59.212 57.895 20.43 13.55 0.00 2.52
6 7 2.325082 GCGTTCGGTGCACAGGAAT 61.325 57.895 20.43 0.00 0.00 3.01
7 8 2.970324 GCGTTCGGTGCACAGGAA 60.970 61.111 20.43 17.83 0.00 3.36
8 9 4.228567 TGCGTTCGGTGCACAGGA 62.229 61.111 20.43 12.50 37.44 3.86
9 10 3.716006 CTGCGTTCGGTGCACAGG 61.716 66.667 20.43 10.09 37.44 4.00
10 11 4.374702 GCTGCGTTCGGTGCACAG 62.375 66.667 20.43 15.76 37.44 3.66
13 14 2.796483 ATAAGGCTGCGTTCGGTGCA 62.796 55.000 11.22 0.00 40.70 4.57
14 15 1.644786 AATAAGGCTGCGTTCGGTGC 61.645 55.000 11.22 0.00 0.00 5.01
15 16 0.096976 CAATAAGGCTGCGTTCGGTG 59.903 55.000 11.22 4.76 0.00 4.94
16 17 1.024579 CCAATAAGGCTGCGTTCGGT 61.025 55.000 11.22 0.00 0.00 4.69
17 18 1.714899 CCCAATAAGGCTGCGTTCGG 61.715 60.000 11.22 10.32 35.39 4.30
18 19 1.714899 CCCCAATAAGGCTGCGTTCG 61.715 60.000 11.22 1.91 35.39 3.95
19 20 0.393808 TCCCCAATAAGGCTGCGTTC 60.394 55.000 11.22 0.00 35.39 3.95
20 21 0.394352 CTCCCCAATAAGGCTGCGTT 60.394 55.000 12.54 12.54 35.39 4.84
21 22 1.224592 CTCCCCAATAAGGCTGCGT 59.775 57.895 0.00 0.00 35.39 5.24
22 23 0.107214 TTCTCCCCAATAAGGCTGCG 60.107 55.000 0.00 0.00 35.39 5.18
23 24 1.340991 TGTTCTCCCCAATAAGGCTGC 60.341 52.381 0.00 0.00 35.39 5.25
24 25 2.755103 GTTGTTCTCCCCAATAAGGCTG 59.245 50.000 0.00 0.00 35.39 4.85
25 26 2.378547 TGTTGTTCTCCCCAATAAGGCT 59.621 45.455 0.00 0.00 35.39 4.58
26 27 2.802719 TGTTGTTCTCCCCAATAAGGC 58.197 47.619 0.00 0.00 35.39 4.35
27 28 4.344104 ACATGTTGTTCTCCCCAATAAGG 58.656 43.478 0.00 0.00 37.03 2.69
28 29 6.180472 ACTACATGTTGTTCTCCCCAATAAG 58.820 40.000 2.30 0.00 0.00 1.73
29 30 6.134535 ACTACATGTTGTTCTCCCCAATAA 57.865 37.500 2.30 0.00 0.00 1.40
30 31 5.772393 ACTACATGTTGTTCTCCCCAATA 57.228 39.130 2.30 0.00 0.00 1.90
31 32 4.657814 ACTACATGTTGTTCTCCCCAAT 57.342 40.909 2.30 0.00 0.00 3.16
32 33 4.447138 AACTACATGTTGTTCTCCCCAA 57.553 40.909 18.19 0.00 37.52 4.12
33 34 5.772393 ATAACTACATGTTGTTCTCCCCA 57.228 39.130 25.44 10.50 39.55 4.96
34 35 5.944007 ACAATAACTACATGTTGTTCTCCCC 59.056 40.000 25.44 0.00 37.79 4.81
35 36 6.879458 AGACAATAACTACATGTTGTTCTCCC 59.121 38.462 25.44 13.82 37.79 4.30
36 37 7.148407 CCAGACAATAACTACATGTTGTTCTCC 60.148 40.741 25.44 13.25 37.79 3.71
37 38 7.387948 ACCAGACAATAACTACATGTTGTTCTC 59.612 37.037 25.44 16.28 37.79 2.87
38 39 7.224297 ACCAGACAATAACTACATGTTGTTCT 58.776 34.615 25.44 15.41 37.79 3.01
39 40 7.435068 ACCAGACAATAACTACATGTTGTTC 57.565 36.000 25.44 13.41 37.79 3.18
40 41 7.389607 GGTACCAGACAATAACTACATGTTGTT 59.610 37.037 25.12 25.12 39.94 2.83
41 42 6.877322 GGTACCAGACAATAACTACATGTTGT 59.123 38.462 7.15 5.12 39.55 3.32
42 43 7.103641 AGGTACCAGACAATAACTACATGTTG 58.896 38.462 15.94 4.29 39.55 3.33
43 44 7.038587 TGAGGTACCAGACAATAACTACATGTT 60.039 37.037 15.94 0.00 42.31 2.71
44 45 6.439375 TGAGGTACCAGACAATAACTACATGT 59.561 38.462 15.94 2.69 0.00 3.21
45 46 6.757010 GTGAGGTACCAGACAATAACTACATG 59.243 42.308 15.94 0.00 0.00 3.21
46 47 6.439375 TGTGAGGTACCAGACAATAACTACAT 59.561 38.462 15.94 0.00 0.00 2.29
47 48 5.776208 TGTGAGGTACCAGACAATAACTACA 59.224 40.000 15.94 1.52 0.00 2.74
48 49 6.276832 TGTGAGGTACCAGACAATAACTAC 57.723 41.667 15.94 0.00 0.00 2.73
49 50 7.837689 ACTATGTGAGGTACCAGACAATAACTA 59.162 37.037 15.94 4.41 0.00 2.24
50 51 6.668283 ACTATGTGAGGTACCAGACAATAACT 59.332 38.462 15.94 3.46 0.00 2.24
51 52 6.875076 ACTATGTGAGGTACCAGACAATAAC 58.125 40.000 15.94 0.00 0.00 1.89
52 53 6.097839 GGACTATGTGAGGTACCAGACAATAA 59.902 42.308 15.94 5.64 0.00 1.40
53 54 5.597182 GGACTATGTGAGGTACCAGACAATA 59.403 44.000 15.94 9.16 0.00 1.90
54 55 4.406003 GGACTATGTGAGGTACCAGACAAT 59.594 45.833 15.94 6.29 0.00 2.71
55 56 3.767673 GGACTATGTGAGGTACCAGACAA 59.232 47.826 15.94 6.40 0.00 3.18
56 57 3.245479 TGGACTATGTGAGGTACCAGACA 60.245 47.826 15.94 16.00 0.00 3.41
57 58 3.362706 TGGACTATGTGAGGTACCAGAC 58.637 50.000 15.94 10.46 0.00 3.51
58 59 3.750501 TGGACTATGTGAGGTACCAGA 57.249 47.619 15.94 0.00 0.00 3.86
59 60 4.281182 GGTATGGACTATGTGAGGTACCAG 59.719 50.000 15.94 3.72 33.01 4.00
60 61 4.220724 GGTATGGACTATGTGAGGTACCA 58.779 47.826 15.94 0.00 33.66 3.25
61 62 4.220724 TGGTATGGACTATGTGAGGTACC 58.779 47.826 2.73 2.73 0.00 3.34
62 63 5.138276 TCTGGTATGGACTATGTGAGGTAC 58.862 45.833 0.00 0.00 0.00 3.34
63 64 5.103643 ACTCTGGTATGGACTATGTGAGGTA 60.104 44.000 0.00 0.00 0.00 3.08
64 65 4.219115 CTCTGGTATGGACTATGTGAGGT 58.781 47.826 0.00 0.00 0.00 3.85
65 66 4.219115 ACTCTGGTATGGACTATGTGAGG 58.781 47.826 0.00 0.00 0.00 3.86
66 67 5.860941 AACTCTGGTATGGACTATGTGAG 57.139 43.478 0.00 0.00 0.00 3.51
67 68 7.914427 ATTAACTCTGGTATGGACTATGTGA 57.086 36.000 0.00 0.00 0.00 3.58
68 69 7.041780 GCAATTAACTCTGGTATGGACTATGTG 60.042 40.741 0.00 0.00 0.00 3.21
69 70 6.992715 GCAATTAACTCTGGTATGGACTATGT 59.007 38.462 0.00 0.00 0.00 2.29
70 71 6.992123 TGCAATTAACTCTGGTATGGACTATG 59.008 38.462 0.00 0.00 0.00 2.23
71 72 6.992715 GTGCAATTAACTCTGGTATGGACTAT 59.007 38.462 0.00 0.00 0.00 2.12
72 73 6.070481 TGTGCAATTAACTCTGGTATGGACTA 60.070 38.462 0.00 0.00 0.00 2.59
73 74 5.186198 GTGCAATTAACTCTGGTATGGACT 58.814 41.667 0.00 0.00 0.00 3.85
74 75 4.941263 TGTGCAATTAACTCTGGTATGGAC 59.059 41.667 0.00 0.00 0.00 4.02
75 76 5.045942 TCTGTGCAATTAACTCTGGTATGGA 60.046 40.000 0.00 0.00 0.00 3.41
76 77 5.185454 TCTGTGCAATTAACTCTGGTATGG 58.815 41.667 0.00 0.00 0.00 2.74
77 78 6.372659 ACTTCTGTGCAATTAACTCTGGTATG 59.627 38.462 0.00 0.00 0.00 2.39
78 79 6.476378 ACTTCTGTGCAATTAACTCTGGTAT 58.524 36.000 0.00 0.00 0.00 2.73
79 80 5.865085 ACTTCTGTGCAATTAACTCTGGTA 58.135 37.500 0.00 0.00 0.00 3.25
80 81 4.718961 ACTTCTGTGCAATTAACTCTGGT 58.281 39.130 0.00 0.00 0.00 4.00
511 579 3.896133 GGACTCGTCGCCGCCATA 61.896 66.667 0.00 0.00 0.00 2.74
549 617 2.676839 GAGTAACATCGACTCCTCGTCA 59.323 50.000 0.00 0.00 42.98 4.35
1067 1137 4.763793 ACAACTTCATCTCCAATGGTTCTG 59.236 41.667 0.00 0.00 0.00 3.02
1724 1794 2.158957 TCAACTTCAGTGTCACCCTCAC 60.159 50.000 0.00 0.00 36.22 3.51
1828 1898 0.328258 GGGCCTCTTCTAACTGGCAA 59.672 55.000 0.84 0.00 46.53 4.52
2118 2188 2.759114 CTGGCCTGGGTGATGTGT 59.241 61.111 3.32 0.00 0.00 3.72
2164 2234 7.548097 TCTGTACACTCAACAATTATCCTCTC 58.452 38.462 0.00 0.00 0.00 3.20
2389 2459 6.919662 GGCACATCTACACCATATTTTTCATG 59.080 38.462 0.00 0.00 0.00 3.07
2435 2505 7.121759 ACACAGCATCAATAGCTATGTTCTTTT 59.878 33.333 7.09 0.00 46.67 2.27
2842 2914 4.661222 TCTTGACCAACTATGCCAAATGA 58.339 39.130 0.00 0.00 0.00 2.57
3156 3228 5.974108 TCTTAAGATCTTCACCCCTAAACG 58.026 41.667 12.24 0.00 0.00 3.60
3316 3388 1.933181 TCAGTCTTGCAGTTTGTGTCG 59.067 47.619 0.00 0.00 0.00 4.35
3613 3689 3.181451 TGCATCCACAAGTCTCAAGTTCT 60.181 43.478 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.