Multiple sequence alignment - TraesCS6B01G298800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G298800 chr6B 100.000 4296 0 0 1 4296 536817720 536813425 0.000000e+00 7934.0
1 TraesCS6B01G298800 chr6D 91.946 3824 184 50 519 4296 355860123 355856378 0.000000e+00 5241.0
2 TraesCS6B01G298800 chr6A 93.345 3441 144 33 883 4296 498531112 498527730 0.000000e+00 5007.0
3 TraesCS6B01G298800 chr6A 88.372 129 8 4 4 129 498534099 498533975 9.620000e-32 148.0
4 TraesCS6B01G298800 chr1A 93.243 74 4 1 453 525 91047474 91047547 1.630000e-19 108.0
5 TraesCS6B01G298800 chr1A 91.892 74 5 1 453 525 298639827 298639754 7.600000e-18 102.0
6 TraesCS6B01G298800 chr2D 93.151 73 3 2 453 523 31733344 31733416 5.880000e-19 106.0
7 TraesCS6B01G298800 chr2D 93.056 72 4 1 453 523 331544164 331544235 2.110000e-18 104.0
8 TraesCS6B01G298800 chr2D 90.789 76 6 1 453 527 15192950 15192875 2.730000e-17 100.0
9 TraesCS6B01G298800 chr7D 93.056 72 4 1 453 523 22959682 22959753 2.110000e-18 104.0
10 TraesCS6B01G298800 chr7D 92.000 75 4 2 453 525 141292104 141292178 2.110000e-18 104.0
11 TraesCS6B01G298800 chr2A 94.118 68 4 0 453 520 562095074 562095141 2.110000e-18 104.0
12 TraesCS6B01G298800 chr5D 86.957 92 6 4 453 542 77746293 77746206 9.830000e-17 99.0
13 TraesCS6B01G298800 chr5D 79.464 112 16 5 1711 1818 38724308 38724416 5.960000e-09 73.1
14 TraesCS6B01G298800 chr5A 79.464 112 16 5 1711 1818 27516506 27516614 5.960000e-09 73.1
15 TraesCS6B01G298800 chr5B 76.786 112 19 6 1711 1818 29337928 29338036 6.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G298800 chr6B 536813425 536817720 4295 True 7934.0 7934 100.0000 1 4296 1 chr6B.!!$R1 4295
1 TraesCS6B01G298800 chr6D 355856378 355860123 3745 True 5241.0 5241 91.9460 519 4296 1 chr6D.!!$R1 3777
2 TraesCS6B01G298800 chr6A 498527730 498534099 6369 True 2577.5 5007 90.8585 4 4296 2 chr6A.!!$R1 4292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 2500 0.178992 ACTGGGCAGTTGCTTAGCAA 60.179 50.0 16.3 16.3 46.80 3.91 F
778 3067 0.250124 AGTTCATGGCCGAAACGTCA 60.250 50.0 0.0 0.0 0.00 4.35 F
1084 3405 0.250513 CTGCTACTCACCTGGGTTCC 59.749 60.0 0.0 0.0 0.00 3.62 F
1085 3406 0.472925 TGCTACTCACCTGGGTTCCA 60.473 55.0 0.0 0.0 0.00 3.53 F
2880 5201 0.036306 AGCCGTTTTTCGTCCCTGAT 59.964 50.0 0.0 0.0 37.94 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 3363 0.458543 ACGCTGATACCAGTTCGCAG 60.459 55.000 0.0 0.0 42.35 5.18 R
2289 4610 0.238553 GCAGGAAAGACGGTTGCTTC 59.761 55.000 0.0 0.0 0.00 3.86 R
2541 4862 1.141665 TGCCACCATCACGATCTCG 59.858 57.895 0.0 0.0 46.33 4.04 R
2956 5277 1.292223 CGTCCATCACCACGAACCT 59.708 57.895 0.0 0.0 38.32 3.50 R
3909 6241 1.450134 GCATCGGAGCCATGTGACA 60.450 57.895 0.0 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.738830 GCCACACCATGCATGCAAC 60.739 57.895 26.68 3.18 0.00 4.17
31 32 1.042229 ACACCATGCATGCAACTTGT 58.958 45.000 26.68 22.59 0.00 3.16
38 39 4.930405 CCATGCATGCAACTTGTAATTTGA 59.070 37.500 26.68 0.00 0.00 2.69
47 51 8.523523 TGCAACTTGTAATTTGAGATTTCATG 57.476 30.769 0.00 0.00 32.27 3.07
65 69 0.673333 TGCTCATTACTGTGCACCGG 60.673 55.000 15.69 9.87 44.52 5.28
96 100 1.427368 ACCCACAGCCAAATGGTAAGA 59.573 47.619 0.71 0.00 37.57 2.10
100 104 4.331968 CCACAGCCAAATGGTAAGAAGTA 58.668 43.478 0.71 0.00 37.57 2.24
101 105 4.396166 CCACAGCCAAATGGTAAGAAGTAG 59.604 45.833 0.71 0.00 37.57 2.57
102 106 5.003804 CACAGCCAAATGGTAAGAAGTAGT 58.996 41.667 0.71 0.00 37.57 2.73
103 107 5.003804 ACAGCCAAATGGTAAGAAGTAGTG 58.996 41.667 0.71 0.00 37.57 2.74
104 108 5.221843 ACAGCCAAATGGTAAGAAGTAGTGA 60.222 40.000 0.71 0.00 37.57 3.41
108 112 7.286775 AGCCAAATGGTAAGAAGTAGTGAAAAA 59.713 33.333 0.71 0.00 37.57 1.94
115 119 8.617809 TGGTAAGAAGTAGTGAAAAATTGTGTC 58.382 33.333 0.00 0.00 0.00 3.67
147 2435 7.609760 TCTAATACAACCAAAGCATGTAGTG 57.390 36.000 0.00 0.00 0.00 2.74
150 2438 7.753309 AATACAACCAAAGCATGTAGTGTAA 57.247 32.000 0.00 0.00 0.00 2.41
152 2440 6.458232 ACAACCAAAGCATGTAGTGTAAAA 57.542 33.333 0.00 0.00 0.00 1.52
153 2441 6.868622 ACAACCAAAGCATGTAGTGTAAAAA 58.131 32.000 0.00 0.00 0.00 1.94
198 2486 9.535878 GAGAGAGTAATTTATAGTTGAACTGGG 57.464 37.037 8.33 0.00 0.00 4.45
212 2500 0.178992 ACTGGGCAGTTGCTTAGCAA 60.179 50.000 16.30 16.30 46.80 3.91
236 2524 2.226262 ATCGAAATTGTGTGAACGCG 57.774 45.000 3.53 3.53 0.00 6.01
253 2541 2.115291 CGCCCTTTCCAAGCTAGCC 61.115 63.158 12.13 0.00 0.00 3.93
267 2555 2.887152 AGCTAGCCACTTGAAAACCTTG 59.113 45.455 12.13 0.00 0.00 3.61
269 2557 1.413118 AGCCACTTGAAAACCTTGGG 58.587 50.000 0.00 0.00 0.00 4.12
288 2576 6.434028 CCTTGGGACTTCTTTTTCATACATGA 59.566 38.462 0.00 0.00 34.44 3.07
294 2582 7.093322 ACTTCTTTTTCATACATGATCCAGC 57.907 36.000 0.00 0.00 36.56 4.85
318 2606 6.408662 GCCACCAGTTCTAGGATTCTATCTTT 60.409 42.308 0.00 0.00 0.00 2.52
345 2633 8.981659 TCTTCCTAGATCACATCAACAATAAGA 58.018 33.333 0.00 0.00 0.00 2.10
347 2635 9.958180 TTCCTAGATCACATCAACAATAAGAAA 57.042 29.630 0.00 0.00 0.00 2.52
390 2678 4.186856 CGAAAGCATAAAATGTTGGGGT 57.813 40.909 0.00 0.00 0.00 4.95
391 2679 4.173256 CGAAAGCATAAAATGTTGGGGTC 58.827 43.478 0.00 0.00 0.00 4.46
428 2716 3.378427 GGCTACTCACAAATTCACCATCC 59.622 47.826 0.00 0.00 0.00 3.51
431 2719 3.157087 ACTCACAAATTCACCATCCCAC 58.843 45.455 0.00 0.00 0.00 4.61
432 2720 2.493278 CTCACAAATTCACCATCCCACC 59.507 50.000 0.00 0.00 0.00 4.61
433 2721 2.158400 TCACAAATTCACCATCCCACCA 60.158 45.455 0.00 0.00 0.00 4.17
434 2722 2.833338 CACAAATTCACCATCCCACCAT 59.167 45.455 0.00 0.00 0.00 3.55
435 2723 3.099141 ACAAATTCACCATCCCACCATC 58.901 45.455 0.00 0.00 0.00 3.51
437 2725 1.612035 ATTCACCATCCCACCATCCT 58.388 50.000 0.00 0.00 0.00 3.24
438 2726 2.278657 TTCACCATCCCACCATCCTA 57.721 50.000 0.00 0.00 0.00 2.94
439 2727 2.512910 TCACCATCCCACCATCCTAT 57.487 50.000 0.00 0.00 0.00 2.57
441 2729 3.520696 TCACCATCCCACCATCCTATAG 58.479 50.000 0.00 0.00 0.00 1.31
442 2730 3.116356 TCACCATCCCACCATCCTATAGT 60.116 47.826 0.00 0.00 0.00 2.12
444 2732 5.032846 CACCATCCCACCATCCTATAGTAT 58.967 45.833 0.00 0.00 0.00 2.12
445 2733 6.010201 TCACCATCCCACCATCCTATAGTATA 60.010 42.308 0.00 0.00 0.00 1.47
446 2734 6.672218 CACCATCCCACCATCCTATAGTATAA 59.328 42.308 0.00 0.00 0.00 0.98
448 2736 8.583686 ACCATCCCACCATCCTATAGTATAATA 58.416 37.037 0.00 0.00 0.00 0.98
449 2737 9.621239 CCATCCCACCATCCTATAGTATAATAT 57.379 37.037 0.00 0.00 0.00 1.28
479 2767 4.976224 AAAAGCGTTTTTCCACTAGTGT 57.024 36.364 21.18 0.00 30.85 3.55
480 2768 7.733402 ATAAAAGCGTTTTTCCACTAGTGTA 57.267 32.000 21.18 2.56 37.64 2.90
481 2769 5.668558 AAAGCGTTTTTCCACTAGTGTAG 57.331 39.130 21.18 7.42 0.00 2.74
482 2770 4.332428 AGCGTTTTTCCACTAGTGTAGT 57.668 40.909 21.18 0.00 40.28 2.73
483 2771 7.254522 TAAAAGCGTTTTTCCACTAGTGTAGTG 60.255 37.037 21.18 6.34 43.91 2.74
495 2783 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
496 2784 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
497 2785 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
498 2786 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
499 2787 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
500 2788 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
501 2789 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
502 2790 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
503 2791 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
510 2798 9.188588 TCAAAAACGCTCTTATATTATAGGACG 57.811 33.333 12.07 12.07 0.00 4.79
511 2799 8.433126 CAAAAACGCTCTTATATTATAGGACGG 58.567 37.037 15.28 5.50 0.00 4.79
512 2800 7.458409 AAACGCTCTTATATTATAGGACGGA 57.542 36.000 15.28 0.00 0.00 4.69
513 2801 6.680874 ACGCTCTTATATTATAGGACGGAG 57.319 41.667 15.28 0.00 0.00 4.63
514 2802 6.413052 ACGCTCTTATATTATAGGACGGAGA 58.587 40.000 15.28 3.34 0.00 3.71
515 2803 6.539464 ACGCTCTTATATTATAGGACGGAGAG 59.461 42.308 15.28 10.49 33.16 3.20
516 2804 6.762187 CGCTCTTATATTATAGGACGGAGAGA 59.238 42.308 10.17 0.00 32.02 3.10
517 2805 7.042321 CGCTCTTATATTATAGGACGGAGAGAG 60.042 44.444 10.17 6.35 32.02 3.20
526 2814 3.698289 AGGACGGAGAGAGTACATTTCA 58.302 45.455 0.00 0.00 0.00 2.69
533 2821 4.187694 GAGAGAGTACATTTCAGGCCAAG 58.812 47.826 5.01 0.00 0.00 3.61
543 2831 3.634397 TTCAGGCCAAGAGAAGTATGG 57.366 47.619 5.01 0.00 37.29 2.74
564 2852 4.286032 TGGTACTTGTTGTGGCTAGATTCT 59.714 41.667 0.00 0.00 0.00 2.40
602 2890 4.771590 TTGGCACAGTTTGATGAATCTC 57.228 40.909 0.00 0.00 42.39 2.75
612 2900 9.853555 ACAGTTTGATGAATCTCGAGATATATC 57.146 33.333 27.52 27.89 33.73 1.63
636 2925 9.705290 ATCTGAACATATAAAACCAAAAACACC 57.295 29.630 0.00 0.00 0.00 4.16
652 2941 4.961438 AACACCAGAATTCCTGCAATTT 57.039 36.364 0.65 0.00 41.57 1.82
703 2992 7.382218 GTCTGAAATTTGATGAACCGAAATTGT 59.618 33.333 0.00 0.00 31.31 2.71
736 3025 0.975887 GGGTGTGTTTGGATTGCCAT 59.024 50.000 0.00 0.00 45.46 4.40
738 3027 1.617850 GGTGTGTTTGGATTGCCATCA 59.382 47.619 0.00 0.00 45.46 3.07
756 3045 3.019799 TCAAAGTGCACCCTACCAAAA 57.980 42.857 14.63 0.00 0.00 2.44
778 3067 0.250124 AGTTCATGGCCGAAACGTCA 60.250 50.000 0.00 0.00 0.00 4.35
802 3091 4.322650 GCCCTTGTTGGATGATTGCTAAAA 60.323 41.667 0.00 0.00 38.35 1.52
840 3132 6.993902 AGTTCATTTTTCTTGCCATTGTTGAT 59.006 30.769 0.00 0.00 0.00 2.57
856 3148 3.833650 TGTTGATCAACTCATGGGCAAAT 59.166 39.130 32.57 0.00 41.67 2.32
860 3152 6.795144 TGATCAACTCATGGGCAAATAAAT 57.205 33.333 0.00 0.00 0.00 1.40
950 3266 3.717350 CGGTCCACGTAATCTTTGAAC 57.283 47.619 0.00 0.00 37.93 3.18
986 3302 6.553953 AAACATTTCCACCAGGTAAGTTTT 57.446 33.333 0.00 0.00 35.89 2.43
995 3311 5.831525 CCACCAGGTAAGTTTTCCTTTTACT 59.168 40.000 0.00 0.00 34.46 2.24
1029 3350 0.754217 CCAGGCCATACAAGCAGCAT 60.754 55.000 5.01 0.00 0.00 3.79
1054 3375 0.530744 CAGTAGCCTGCGAACTGGTA 59.469 55.000 15.58 0.00 37.55 3.25
1083 3404 0.391793 GCTGCTACTCACCTGGGTTC 60.392 60.000 0.00 0.00 0.00 3.62
1084 3405 0.250513 CTGCTACTCACCTGGGTTCC 59.749 60.000 0.00 0.00 0.00 3.62
1085 3406 0.472925 TGCTACTCACCTGGGTTCCA 60.473 55.000 0.00 0.00 0.00 3.53
1086 3407 0.690762 GCTACTCACCTGGGTTCCAA 59.309 55.000 0.00 0.00 30.80 3.53
1087 3408 1.339151 GCTACTCACCTGGGTTCCAAG 60.339 57.143 0.00 0.00 30.80 3.61
1088 3409 1.978580 CTACTCACCTGGGTTCCAAGT 59.021 52.381 0.00 0.00 30.80 3.16
1089 3410 1.222567 ACTCACCTGGGTTCCAAGTT 58.777 50.000 0.00 0.00 30.80 2.66
1119 3440 7.665559 ACAAAGAAATTGCTACTCATCCACTAA 59.334 33.333 0.00 0.00 43.13 2.24
1192 3513 0.524862 CACCTCCAACTTCAGCATGC 59.475 55.000 10.51 10.51 34.76 4.06
1206 3527 1.055040 GCATGCCTGATCTCTACCCT 58.945 55.000 6.36 0.00 0.00 4.34
1231 3552 1.226974 GCCAATGCTGCTCATGCTG 60.227 57.895 0.00 0.00 40.48 4.41
1263 3584 0.834261 GGCTCTCCTACATCTCCCCC 60.834 65.000 0.00 0.00 0.00 5.40
1392 3713 1.959226 GCCGGTCGAGCAACAAGAA 60.959 57.895 15.89 0.00 0.00 2.52
1419 3740 2.049433 CACCTGGTCGACACGTCC 60.049 66.667 18.91 0.00 35.78 4.79
1420 3741 3.667282 ACCTGGTCGACACGTCCG 61.667 66.667 18.91 0.82 37.84 4.79
1421 3742 3.667282 CCTGGTCGACACGTCCGT 61.667 66.667 18.91 0.00 37.84 4.69
1446 3767 2.543777 ATGCAACTGGTACACGAGTT 57.456 45.000 4.17 4.17 44.02 3.01
2235 4556 2.493030 CCGCCGTTCGTCACCTAT 59.507 61.111 0.00 0.00 36.19 2.57
2250 4571 0.828677 CCTATTTCCGGTTCGACCCT 59.171 55.000 0.00 0.00 33.75 4.34
2289 4610 1.811266 CGTGCCCATCTTCTCCGTG 60.811 63.158 0.00 0.00 0.00 4.94
2355 4676 2.894765 TGCGATATTCCCGGAGATACAA 59.105 45.455 0.73 0.00 0.00 2.41
2559 4880 1.141665 CGAGATCGTGATGGTGGCA 59.858 57.895 0.00 0.00 34.11 4.92
2694 5015 2.506438 GCGAACCTCGACTTCGGG 60.506 66.667 17.76 4.64 43.74 5.14
2745 5066 2.768492 CCGCTACGGCTACTTCGGT 61.768 63.158 0.00 0.00 41.17 4.69
2748 5069 0.108945 GCTACGGCTACTTCGGTGTT 60.109 55.000 0.00 0.00 35.22 3.32
2802 5123 4.462417 CTCGACTTCGACCGCGCT 62.462 66.667 5.56 0.00 44.22 5.92
2877 5198 1.302271 GGAGCCGTTTTTCGTCCCT 60.302 57.895 0.00 0.00 37.94 4.20
2880 5201 0.036306 AGCCGTTTTTCGTCCCTGAT 59.964 50.000 0.00 0.00 37.94 2.90
3048 5369 2.362760 TACGGCTTCCACGGCCTA 60.363 61.111 0.00 0.00 46.73 3.93
3057 5378 0.968901 TCCACGGCCTATTCGTCACT 60.969 55.000 0.00 0.00 38.94 3.41
3115 5436 0.741574 TTCAGACACGCCAACACGTT 60.742 50.000 0.00 0.00 45.75 3.99
3144 5465 4.374702 CGCCATAGATTGCGCGCC 62.375 66.667 30.77 13.83 44.64 6.53
3167 5488 7.321153 GCCACGATGTATAATAGTAGACCAAT 58.679 38.462 0.00 0.00 0.00 3.16
3367 5694 8.624367 ATTGCTAACTCATCGAGTAGTAGTAT 57.376 34.615 3.12 0.00 42.59 2.12
3377 5704 5.888105 TCGAGTAGTAGTATGAAACAAGGC 58.112 41.667 0.00 0.00 0.00 4.35
3395 5722 6.296026 ACAAGGCATGAACTACAAGAACTTA 58.704 36.000 0.00 0.00 0.00 2.24
3400 5727 6.426937 GGCATGAACTACAAGAACTTAACAGA 59.573 38.462 0.00 0.00 0.00 3.41
3401 5728 7.119846 GGCATGAACTACAAGAACTTAACAGAT 59.880 37.037 0.00 0.00 0.00 2.90
3432 5759 9.871299 GAGAGTAAAACATTTCTCTCAAAGTTC 57.129 33.333 15.83 1.62 46.78 3.01
3449 5776 4.258702 AGTTCTACACACATGACCTCAC 57.741 45.455 0.00 0.00 0.00 3.51
3511 5838 9.871238 GATTTCACGGGATATACATACTATTGT 57.129 33.333 0.00 0.00 0.00 2.71
3530 5857 3.811083 TGTATTTCACAAAGTCGGTGGT 58.189 40.909 0.00 0.00 36.90 4.16
3548 5875 2.224892 TGGTGCTACCTTGCATTTGGTA 60.225 45.455 11.57 11.57 45.23 3.25
3562 5892 9.241317 CTTGCATTTGGTAATAGAATCATCAAC 57.759 33.333 0.00 0.00 0.00 3.18
3588 5920 4.940046 AGCATCCTCAATGTTGTTAGTCTG 59.060 41.667 0.00 0.00 37.71 3.51
3589 5921 4.937620 GCATCCTCAATGTTGTTAGTCTGA 59.062 41.667 0.00 0.00 37.71 3.27
3594 5926 7.930217 TCCTCAATGTTGTTAGTCTGAAAAAG 58.070 34.615 0.00 0.00 0.00 2.27
3598 5930 6.942532 ATGTTGTTAGTCTGAAAAAGCAGA 57.057 33.333 0.00 0.00 42.31 4.26
3603 5935 7.194607 TGTTAGTCTGAAAAAGCAGAATGAG 57.805 36.000 0.00 0.00 45.69 2.90
3620 5952 1.542915 TGAGCATGGCTTCTCTTTTGC 59.457 47.619 0.00 0.00 39.88 3.68
3652 5984 3.070302 CCTAACTGCTCCTATGGAAGGTC 59.930 52.174 0.00 0.00 46.62 3.85
3674 6006 5.006552 GTCTGAGAGTATGATTTTCTGCAGC 59.993 44.000 9.47 0.00 0.00 5.25
3675 6007 4.194640 TGAGAGTATGATTTTCTGCAGCC 58.805 43.478 9.47 0.00 0.00 4.85
3704 6036 4.572985 ATGCCAACATCATTACCAATCG 57.427 40.909 0.00 0.00 0.00 3.34
3710 6042 5.815222 CCAACATCATTACCAATCGTCAGTA 59.185 40.000 0.00 0.00 0.00 2.74
3738 6070 0.322975 TCTGCAGCACTTCTCTTCCC 59.677 55.000 9.47 0.00 0.00 3.97
3754 6086 6.899089 TCTCTTCCCAACATCTAATGCATTA 58.101 36.000 17.94 17.94 0.00 1.90
3785 6117 9.658799 TTTTTACTCATCAAAGGAGATAGTGAG 57.341 33.333 0.00 0.00 36.26 3.51
3786 6118 8.595362 TTTACTCATCAAAGGAGATAGTGAGA 57.405 34.615 6.49 0.00 36.26 3.27
3787 6119 8.774546 TTACTCATCAAAGGAGATAGTGAGAT 57.225 34.615 6.49 0.00 36.26 2.75
3788 6120 9.868160 TTACTCATCAAAGGAGATAGTGAGATA 57.132 33.333 6.49 0.00 36.26 1.98
3796 6128 6.401537 AGGAGATAGTGAGATACCTAGCAT 57.598 41.667 0.00 0.00 0.00 3.79
3850 6182 3.281240 GGCACATTCCACAGCCTG 58.719 61.111 0.00 0.00 43.70 4.85
3909 6241 4.583871 CCCTTTATGACTTGAGAAGCACT 58.416 43.478 0.00 0.00 0.00 4.40
3913 6245 3.758755 ATGACTTGAGAAGCACTGTCA 57.241 42.857 0.00 0.00 41.38 3.58
3923 6255 2.393768 GCACTGTCACATGGCTCCG 61.394 63.158 0.00 0.00 0.00 4.63
3969 6301 2.032549 CAGTGGCAGTCAACTTTTCTCG 60.033 50.000 0.00 0.00 0.00 4.04
3971 6303 2.808543 GTGGCAGTCAACTTTTCTCGAT 59.191 45.455 0.00 0.00 0.00 3.59
3976 6308 3.736252 CAGTCAACTTTTCTCGATGTCGT 59.264 43.478 2.04 0.00 40.80 4.34
4035 6367 3.555966 ACCCTCCAATAATACTGCAAGC 58.444 45.455 0.00 0.00 37.60 4.01
4051 6383 3.058016 TGCAAGCAAACAGAGCAGATTAC 60.058 43.478 0.00 0.00 0.00 1.89
4052 6384 3.190118 GCAAGCAAACAGAGCAGATTACT 59.810 43.478 0.00 0.00 0.00 2.24
4070 6404 8.828644 CAGATTACTTCAGATCAAAAGAGATGG 58.171 37.037 12.51 0.00 0.00 3.51
4203 6553 9.084533 TGCATATCCTACATACTACATACACAA 57.915 33.333 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.103094 TGCATGGTGTGGCTATCTACTC 59.897 50.000 0.00 0.00 0.00 2.59
1 2 2.118679 TGCATGGTGTGGCTATCTACT 58.881 47.619 0.00 0.00 0.00 2.57
2 3 2.620251 TGCATGGTGTGGCTATCTAC 57.380 50.000 0.00 0.00 0.00 2.59
12 13 1.042229 ACAAGTTGCATGCATGGTGT 58.958 45.000 27.34 20.88 0.00 4.16
27 28 9.582431 AATGAGCATGAAATCTCAAATTACAAG 57.418 29.630 0.00 0.00 41.96 3.16
38 39 4.945543 TGCACAGTAATGAGCATGAAATCT 59.054 37.500 11.24 0.00 30.89 2.40
47 51 1.369091 CCCGGTGCACAGTAATGAGC 61.369 60.000 20.43 5.61 0.00 4.26
65 69 2.089201 GGCTGTGGGTTGTACAATACC 58.911 52.381 19.75 19.75 0.00 2.73
96 100 7.490962 TGATCGACACAATTTTTCACTACTT 57.509 32.000 0.00 0.00 0.00 2.24
100 104 8.498054 AGATATGATCGACACAATTTTTCACT 57.502 30.769 0.00 0.00 0.00 3.41
108 112 9.424319 GGTTGTATTAGATATGATCGACACAAT 57.576 33.333 0.00 0.00 30.49 2.71
115 119 8.310406 TGCTTTGGTTGTATTAGATATGATCG 57.690 34.615 0.00 0.00 0.00 3.69
129 133 6.458232 TTTTACACTACATGCTTTGGTTGT 57.542 33.333 0.00 0.00 0.00 3.32
169 2457 9.268282 AGTTCAACTATAAATTACTCTCTCCCA 57.732 33.333 0.00 0.00 0.00 4.37
170 2458 9.535878 CAGTTCAACTATAAATTACTCTCTCCC 57.464 37.037 0.00 0.00 0.00 4.30
171 2459 9.535878 CCAGTTCAACTATAAATTACTCTCTCC 57.464 37.037 0.00 0.00 0.00 3.71
172 2460 9.535878 CCCAGTTCAACTATAAATTACTCTCTC 57.464 37.037 0.00 0.00 0.00 3.20
173 2461 7.988028 GCCCAGTTCAACTATAAATTACTCTCT 59.012 37.037 0.00 0.00 0.00 3.10
174 2462 7.769044 TGCCCAGTTCAACTATAAATTACTCTC 59.231 37.037 0.00 0.00 0.00 3.20
175 2463 7.630082 TGCCCAGTTCAACTATAAATTACTCT 58.370 34.615 0.00 0.00 0.00 3.24
176 2464 7.553044 ACTGCCCAGTTCAACTATAAATTACTC 59.447 37.037 0.00 0.00 38.83 2.59
177 2465 7.402862 ACTGCCCAGTTCAACTATAAATTACT 58.597 34.615 0.00 0.00 38.83 2.24
178 2466 7.625828 ACTGCCCAGTTCAACTATAAATTAC 57.374 36.000 0.00 0.00 38.83 1.89
206 2494 7.366513 TCACACAATTTCGATTGAATTGCTAA 58.633 30.769 17.07 2.91 35.60 3.09
212 2500 4.616802 GCGTTCACACAATTTCGATTGAAT 59.383 37.500 5.78 0.00 35.60 2.57
218 2506 0.383737 GCGCGTTCACACAATTTCGA 60.384 50.000 8.43 0.00 0.00 3.71
236 2524 1.000896 TGGCTAGCTTGGAAAGGGC 60.001 57.895 15.72 0.00 46.35 5.19
253 2541 3.954258 AGAAGTCCCAAGGTTTTCAAGTG 59.046 43.478 0.00 0.00 0.00 3.16
267 2555 6.603201 TGGATCATGTATGAAAAAGAAGTCCC 59.397 38.462 0.00 0.00 40.69 4.46
269 2557 7.192232 GCTGGATCATGTATGAAAAAGAAGTC 58.808 38.462 0.00 0.00 40.69 3.01
288 2576 1.207791 CCTAGAACTGGTGGCTGGAT 58.792 55.000 0.00 0.00 0.00 3.41
294 2582 6.739331 AAGATAGAATCCTAGAACTGGTGG 57.261 41.667 0.00 0.00 0.00 4.61
318 2606 9.605275 CTTATTGTTGATGTGATCTAGGAAGAA 57.395 33.333 0.00 0.00 34.73 2.52
369 2657 4.173256 GACCCCAACATTTTATGCTTTCG 58.827 43.478 0.00 0.00 0.00 3.46
402 2690 3.378427 GGTGAATTTGTGAGTAGCCATCC 59.622 47.826 0.00 0.00 0.00 3.51
453 2741 8.789762 ACACTAGTGGAAAAACGCTTTTATATT 58.210 29.630 26.12 0.00 34.83 1.28
456 2744 6.628919 ACACTAGTGGAAAAACGCTTTTAT 57.371 33.333 26.12 0.00 34.83 1.40
457 2745 6.762661 ACTACACTAGTGGAAAAACGCTTTTA 59.237 34.615 26.12 4.57 37.69 1.52
458 2746 4.976224 ACACTAGTGGAAAAACGCTTTT 57.024 36.364 26.12 0.00 37.46 2.27
459 2747 5.121105 ACTACACTAGTGGAAAAACGCTTT 58.879 37.500 26.12 3.80 37.69 3.51
460 2748 4.700700 ACTACACTAGTGGAAAAACGCTT 58.299 39.130 26.12 4.31 37.69 4.68
461 2749 4.332428 ACTACACTAGTGGAAAAACGCT 57.668 40.909 26.12 5.03 37.69 5.07
472 2760 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
473 2761 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
474 2762 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
475 2763 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
476 2764 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
477 2765 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
484 2772 9.188588 CGTCCTATAATATAAGAGCGTTTTTGA 57.811 33.333 0.00 0.00 0.00 2.69
485 2773 8.433126 CCGTCCTATAATATAAGAGCGTTTTTG 58.567 37.037 0.00 0.00 0.00 2.44
486 2774 8.362639 TCCGTCCTATAATATAAGAGCGTTTTT 58.637 33.333 0.00 0.00 0.00 1.94
487 2775 7.889469 TCCGTCCTATAATATAAGAGCGTTTT 58.111 34.615 0.00 0.00 0.00 2.43
488 2776 7.392673 TCTCCGTCCTATAATATAAGAGCGTTT 59.607 37.037 0.00 0.00 0.00 3.60
489 2777 6.883217 TCTCCGTCCTATAATATAAGAGCGTT 59.117 38.462 0.00 0.00 0.00 4.84
490 2778 6.413052 TCTCCGTCCTATAATATAAGAGCGT 58.587 40.000 0.00 0.00 0.00 5.07
491 2779 6.762187 TCTCTCCGTCCTATAATATAAGAGCG 59.238 42.308 0.00 0.00 0.00 5.03
492 2780 7.771826 ACTCTCTCCGTCCTATAATATAAGAGC 59.228 40.741 0.00 0.00 30.91 4.09
495 2783 9.887629 TGTACTCTCTCCGTCCTATAATATAAG 57.112 37.037 0.00 0.00 0.00 1.73
498 2786 9.756571 AAATGTACTCTCTCCGTCCTATAATAT 57.243 33.333 0.00 0.00 0.00 1.28
499 2787 9.228949 GAAATGTACTCTCTCCGTCCTATAATA 57.771 37.037 0.00 0.00 0.00 0.98
500 2788 7.724506 TGAAATGTACTCTCTCCGTCCTATAAT 59.275 37.037 0.00 0.00 0.00 1.28
501 2789 7.058525 TGAAATGTACTCTCTCCGTCCTATAA 58.941 38.462 0.00 0.00 0.00 0.98
502 2790 6.598503 TGAAATGTACTCTCTCCGTCCTATA 58.401 40.000 0.00 0.00 0.00 1.31
503 2791 5.446860 TGAAATGTACTCTCTCCGTCCTAT 58.553 41.667 0.00 0.00 0.00 2.57
504 2792 4.851843 TGAAATGTACTCTCTCCGTCCTA 58.148 43.478 0.00 0.00 0.00 2.94
505 2793 3.697045 CTGAAATGTACTCTCTCCGTCCT 59.303 47.826 0.00 0.00 0.00 3.85
506 2794 3.181485 CCTGAAATGTACTCTCTCCGTCC 60.181 52.174 0.00 0.00 0.00 4.79
507 2795 3.735514 GCCTGAAATGTACTCTCTCCGTC 60.736 52.174 0.00 0.00 0.00 4.79
508 2796 2.166664 GCCTGAAATGTACTCTCTCCGT 59.833 50.000 0.00 0.00 0.00 4.69
509 2797 2.482142 GGCCTGAAATGTACTCTCTCCG 60.482 54.545 0.00 0.00 0.00 4.63
510 2798 2.501723 TGGCCTGAAATGTACTCTCTCC 59.498 50.000 3.32 0.00 0.00 3.71
511 2799 3.895232 TGGCCTGAAATGTACTCTCTC 57.105 47.619 3.32 0.00 0.00 3.20
512 2800 3.840666 TCTTGGCCTGAAATGTACTCTCT 59.159 43.478 3.32 0.00 0.00 3.10
513 2801 4.081420 TCTCTTGGCCTGAAATGTACTCTC 60.081 45.833 3.32 0.00 0.00 3.20
514 2802 3.840666 TCTCTTGGCCTGAAATGTACTCT 59.159 43.478 3.32 0.00 0.00 3.24
515 2803 4.207891 TCTCTTGGCCTGAAATGTACTC 57.792 45.455 3.32 0.00 0.00 2.59
516 2804 4.042187 ACTTCTCTTGGCCTGAAATGTACT 59.958 41.667 3.32 0.00 0.00 2.73
517 2805 4.327680 ACTTCTCTTGGCCTGAAATGTAC 58.672 43.478 3.32 0.00 0.00 2.90
526 2814 3.725634 AGTACCATACTTCTCTTGGCCT 58.274 45.455 3.32 0.00 34.86 5.19
533 2821 4.392138 GCCACAACAAGTACCATACTTCTC 59.608 45.833 0.00 0.00 45.38 2.87
543 2831 7.265673 TGATAGAATCTAGCCACAACAAGTAC 58.734 38.462 2.86 0.00 0.00 2.73
549 2837 7.283127 TGGATTTTGATAGAATCTAGCCACAAC 59.717 37.037 2.86 0.00 34.65 3.32
612 2900 8.879342 TGGTGTTTTTGGTTTTATATGTTCAG 57.121 30.769 0.00 0.00 0.00 3.02
613 2901 8.696374 TCTGGTGTTTTTGGTTTTATATGTTCA 58.304 29.630 0.00 0.00 0.00 3.18
619 2907 8.929487 AGGAATTCTGGTGTTTTTGGTTTTATA 58.071 29.630 5.23 0.00 0.00 0.98
627 2915 4.057406 TGCAGGAATTCTGGTGTTTTTG 57.943 40.909 5.23 0.00 43.54 2.44
636 2925 2.533266 GCCGAAATTGCAGGAATTCTG 58.467 47.619 5.23 3.21 46.03 3.02
652 2941 2.046700 GGTGATTGGGTTCGCCGA 60.047 61.111 0.00 0.00 36.61 5.54
703 2992 2.242708 ACACACCCTAAAACCAGGTTCA 59.757 45.455 4.93 0.00 33.44 3.18
736 3025 2.738587 TTTGGTAGGGTGCACTTTGA 57.261 45.000 17.98 0.00 0.00 2.69
756 3045 1.679153 ACGTTTCGGCCATGAACTTTT 59.321 42.857 2.24 0.00 0.00 2.27
778 3067 1.188863 GCAATCATCCAACAAGGGCT 58.811 50.000 0.00 0.00 38.24 5.19
813 3105 8.149647 TCAACAATGGCAAGAAAAATGAACTAT 58.850 29.630 0.00 0.00 0.00 2.12
840 3132 5.951148 TGAGATTTATTTGCCCATGAGTTGA 59.049 36.000 0.00 0.00 0.00 3.18
860 3152 8.357402 GCTAGTTTTCCTAAAATTTGGTTGAGA 58.643 33.333 0.00 0.00 32.22 3.27
950 3266 7.497249 TGGTGGAAATGTTTATTTGGTGAAAAG 59.503 33.333 0.00 0.00 36.66 2.27
1013 3334 2.035066 CCTTTATGCTGCTTGTATGGCC 59.965 50.000 0.00 0.00 0.00 5.36
1014 3335 2.544486 GCCTTTATGCTGCTTGTATGGC 60.544 50.000 0.00 7.28 0.00 4.40
1015 3336 2.689471 TGCCTTTATGCTGCTTGTATGG 59.311 45.455 0.00 1.44 0.00 2.74
1042 3363 0.458543 ACGCTGATACCAGTTCGCAG 60.459 55.000 0.00 0.00 42.35 5.18
1083 3404 5.118286 AGCAATTTCTTTGTTGGAACTTGG 58.882 37.500 0.00 0.00 37.65 3.61
1084 3405 6.980397 AGTAGCAATTTCTTTGTTGGAACTTG 59.020 34.615 0.00 0.00 37.65 3.16
1085 3406 7.112452 AGTAGCAATTTCTTTGTTGGAACTT 57.888 32.000 0.00 0.00 37.65 2.66
1086 3407 6.321181 TGAGTAGCAATTTCTTTGTTGGAACT 59.679 34.615 0.00 0.00 37.65 3.01
1087 3408 6.503524 TGAGTAGCAATTTCTTTGTTGGAAC 58.496 36.000 0.00 0.00 37.65 3.62
1088 3409 6.707440 TGAGTAGCAATTTCTTTGTTGGAA 57.293 33.333 0.00 0.00 37.65 3.53
1089 3410 6.071952 GGATGAGTAGCAATTTCTTTGTTGGA 60.072 38.462 0.00 0.00 37.65 3.53
1119 3440 4.401519 CAGATCAATGGCTCTTTGGATTGT 59.598 41.667 0.00 0.00 0.00 2.71
1192 3513 1.500474 TTGGCAGGGTAGAGATCAGG 58.500 55.000 0.00 0.00 0.00 3.86
1231 3552 1.852067 GAGAGCCTCCTCGATCTCGC 61.852 65.000 0.00 0.00 43.05 5.03
1263 3584 3.497932 GCAGCAGAAGAGGCAGCG 61.498 66.667 0.00 0.00 34.12 5.18
1392 3713 1.371558 GACCAGGTGCTCTTCCGTT 59.628 57.895 0.00 0.00 0.00 4.44
1419 3740 2.289274 TGTACCAGTTGCATTGTTCACG 59.711 45.455 0.00 0.00 0.00 4.35
1420 3741 3.628017 GTGTACCAGTTGCATTGTTCAC 58.372 45.455 0.00 0.00 0.00 3.18
1421 3742 2.289274 CGTGTACCAGTTGCATTGTTCA 59.711 45.455 0.00 0.00 0.00 3.18
1422 3743 2.546368 TCGTGTACCAGTTGCATTGTTC 59.454 45.455 0.00 0.00 0.00 3.18
1446 3767 2.483745 CTCGTTCTCGCGGTAGCA 59.516 61.111 6.13 0.00 45.49 3.49
1521 3842 3.768632 GCCTGTAGCGAAGTGACG 58.231 61.111 0.00 0.00 0.00 4.35
2049 4370 4.719106 AGGTCCGACTCGCCGAGT 62.719 66.667 21.41 21.41 46.42 4.18
2235 4556 2.031465 GCAGGGTCGAACCGGAAA 59.969 61.111 24.73 0.00 39.83 3.13
2289 4610 0.238553 GCAGGAAAGACGGTTGCTTC 59.761 55.000 0.00 0.00 0.00 3.86
2295 4616 1.300697 GTCGTGCAGGAAAGACGGT 60.301 57.895 11.28 0.00 33.88 4.83
2355 4676 1.410083 CCCATGGGGTTCATCACGATT 60.410 52.381 24.53 0.00 38.25 3.34
2541 4862 1.141665 TGCCACCATCACGATCTCG 59.858 57.895 0.00 0.00 46.33 4.04
2694 5015 2.109126 GCAGCTCGGGTTGATCACC 61.109 63.158 2.12 0.00 46.46 4.02
2877 5198 1.888018 GTTCCCCTCGACGTCATCA 59.112 57.895 17.16 0.00 0.00 3.07
2880 5201 3.367743 CCGTTCCCCTCGACGTCA 61.368 66.667 17.16 1.87 37.56 4.35
2956 5277 1.292223 CGTCCATCACCACGAACCT 59.708 57.895 0.00 0.00 38.32 3.50
3048 5369 1.513158 CTCGGCCTGAGTGACGAAT 59.487 57.895 14.22 0.00 40.03 3.34
3115 5436 0.874175 CTATGGCGCGGAAACATCGA 60.874 55.000 8.83 0.00 0.00 3.59
3167 5488 1.273609 ACCTACCCATGCACCACTCTA 60.274 52.381 0.00 0.00 0.00 2.43
3267 5588 4.160439 TGCAGGTATGTTTTTCACCAACAA 59.840 37.500 0.00 0.00 37.67 2.83
3269 5590 4.202111 ACTGCAGGTATGTTTTTCACCAAC 60.202 41.667 19.93 0.00 34.62 3.77
3355 5682 5.647589 TGCCTTGTTTCATACTACTACTCG 58.352 41.667 0.00 0.00 0.00 4.18
3367 5694 5.129634 TCTTGTAGTTCATGCCTTGTTTCA 58.870 37.500 0.00 0.00 0.00 2.69
3377 5704 8.993121 ACATCTGTTAAGTTCTTGTAGTTCATG 58.007 33.333 0.00 0.00 0.00 3.07
3412 5739 8.956426 TGTGTAGAACTTTGAGAGAAATGTTTT 58.044 29.630 0.00 0.00 30.18 2.43
3413 5740 8.398665 GTGTGTAGAACTTTGAGAGAAATGTTT 58.601 33.333 0.00 0.00 30.18 2.83
3414 5741 7.552687 TGTGTGTAGAACTTTGAGAGAAATGTT 59.447 33.333 0.00 0.00 32.03 2.71
3415 5742 7.047891 TGTGTGTAGAACTTTGAGAGAAATGT 58.952 34.615 0.00 0.00 0.00 2.71
3432 5759 2.932622 GCCAGTGAGGTCATGTGTGTAG 60.933 54.545 0.00 0.00 40.61 2.74
3511 5838 2.550606 GCACCACCGACTTTGTGAAATA 59.449 45.455 0.00 0.00 35.74 1.40
3519 5846 0.763035 AAGGTAGCACCACCGACTTT 59.237 50.000 7.86 0.00 43.84 2.66
3548 5875 6.839454 AGGATGCTGAGTTGATGATTCTATT 58.161 36.000 0.00 0.00 0.00 1.73
3562 5892 4.940046 ACTAACAACATTGAGGATGCTGAG 59.060 41.667 0.00 0.00 39.47 3.35
3588 5920 2.928116 GCCATGCTCATTCTGCTTTTTC 59.072 45.455 0.00 0.00 0.00 2.29
3589 5921 2.565834 AGCCATGCTCATTCTGCTTTTT 59.434 40.909 0.00 0.00 30.62 1.94
3594 5926 1.334243 GAGAAGCCATGCTCATTCTGC 59.666 52.381 5.12 0.00 38.25 4.26
3598 5930 3.368116 GCAAAAGAGAAGCCATGCTCATT 60.368 43.478 0.00 0.00 38.25 2.57
3620 5952 7.661847 CCATAGGAGCAGTTAGGTTAATTTAGG 59.338 40.741 0.00 0.00 0.00 2.69
3652 5984 4.272991 GGCTGCAGAAAATCATACTCTCAG 59.727 45.833 20.43 0.00 0.00 3.35
3674 6006 0.729116 GATGTTGGCATCTGTGTCGG 59.271 55.000 0.00 0.00 45.97 4.79
3698 6030 5.518128 CAGAGAAGATTGTACTGACGATTGG 59.482 44.000 0.00 0.00 29.01 3.16
3704 6036 3.616379 GCTGCAGAGAAGATTGTACTGAC 59.384 47.826 20.43 0.00 0.00 3.51
3710 6042 2.855209 AGTGCTGCAGAGAAGATTGT 57.145 45.000 20.43 0.00 0.00 2.71
3796 6128 5.534654 AGAAGCTGGTGTTTTATGCAACTTA 59.465 36.000 0.00 0.00 0.00 2.24
3807 6139 4.464008 TGAATCTTGAGAAGCTGGTGTTT 58.536 39.130 0.00 0.00 0.00 2.83
3809 6141 3.777106 TGAATCTTGAGAAGCTGGTGT 57.223 42.857 0.00 0.00 0.00 4.16
3815 6147 2.751259 TGCCACATGAATCTTGAGAAGC 59.249 45.455 0.00 1.51 0.00 3.86
3850 6182 3.500471 CCAGGCCCTTTATATCCCTTTCC 60.500 52.174 0.00 0.00 0.00 3.13
3877 6209 3.606687 AGTCATAAAGGGCGGTAACTTG 58.393 45.455 0.00 0.00 0.00 3.16
3879 6211 3.262405 TCAAGTCATAAAGGGCGGTAACT 59.738 43.478 0.00 0.00 0.00 2.24
3909 6241 1.450134 GCATCGGAGCCATGTGACA 60.450 57.895 0.00 0.00 0.00 3.58
3913 6245 3.762429 ATGCGCATCGGAGCCATGT 62.762 57.895 19.28 0.00 39.30 3.21
3923 6255 6.300354 AGTACCTTATGTAAAATGCGCATC 57.700 37.500 25.53 11.81 0.00 3.91
3969 6301 1.741770 GTCACCTGGGCACGACATC 60.742 63.158 0.00 0.00 0.00 3.06
3971 6303 2.050836 ATTGTCACCTGGGCACGACA 62.051 55.000 0.00 2.60 36.63 4.35
3976 6308 4.013728 GTTTATACATTGTCACCTGGGCA 58.986 43.478 0.00 0.00 0.00 5.36
4035 6367 6.592994 TGATCTGAAGTAATCTGCTCTGTTTG 59.407 38.462 0.00 0.00 0.00 2.93
4051 6383 8.327941 TGTTTACCATCTCTTTTGATCTGAAG 57.672 34.615 0.00 0.00 0.00 3.02
4052 6384 8.868522 ATGTTTACCATCTCTTTTGATCTGAA 57.131 30.769 0.00 0.00 0.00 3.02
4124 6465 9.206690 TCTGATAATCTGAAAGGTCAATAGTCT 57.793 33.333 0.00 0.00 31.88 3.24
4131 6472 6.566079 ACCATCTGATAATCTGAAAGGTCA 57.434 37.500 0.00 0.00 34.31 4.02
4203 6553 9.930693 CAGACCTCTTCTACTTACTTGTTAATT 57.069 33.333 0.00 0.00 31.12 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.