Multiple sequence alignment - TraesCS6B01G298700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G298700 chr6B 100.000 4484 0 0 1 4484 536810417 536814900 0.000000e+00 8281
1 TraesCS6B01G298700 chr6A 93.730 3684 164 35 830 4484 498525555 498529200 0.000000e+00 5461
2 TraesCS6B01G298700 chr6A 87.941 340 37 3 1 336 498335984 498336323 9.040000e-107 398
3 TraesCS6B01G298700 chr6A 87.815 238 25 4 523 760 498381936 498382169 4.420000e-70 276
4 TraesCS6B01G298700 chr6D 92.466 3783 148 58 740 4484 355854135 355857818 0.000000e+00 5280
5 TraesCS6B01G298700 chr6D 88.383 439 32 6 333 760 355853655 355854085 1.110000e-140 510
6 TraesCS6B01G298700 chr6D 87.021 339 40 4 1 336 355843074 355843411 3.270000e-101 379


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G298700 chr6B 536810417 536814900 4483 False 8281 8281 100.0000 1 4484 1 chr6B.!!$F1 4483
1 TraesCS6B01G298700 chr6A 498525555 498529200 3645 False 5461 5461 93.7300 830 4484 1 chr6A.!!$F3 3654
2 TraesCS6B01G298700 chr6D 355853655 355857818 4163 False 2895 5280 90.4245 333 4484 2 chr6D.!!$F2 4151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.031817 CCAGGAAATCCAATGCCCCT 60.032 55.0 1.67 0.0 38.89 4.79 F
315 316 0.392193 CATTGGAGCACGAAGAGGCT 60.392 55.0 0.00 0.0 43.22 4.58 F
318 319 0.747255 TGGAGCACGAAGAGGCTATC 59.253 55.0 0.00 0.0 41.05 2.08 F
2275 2363 0.749454 AGATTTGTCATGGGCCGAGC 60.749 55.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 1978 0.040958 GCAAATGGAATAGAGCGCGG 60.041 55.000 8.83 0.0 0.00 6.46 R
2099 2187 2.172505 TGTCAAGAAGGCAGAGAAACCA 59.827 45.455 0.00 0.0 0.00 3.67 R
2316 2404 5.560724 TGTTAAAAGGGTGATCTCCTTCTG 58.439 41.667 17.23 0.0 43.24 3.02 R
3565 3678 0.322975 TCTGCAGCACTTCTCTTCCC 59.677 55.000 9.47 0.0 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.568003 GGGTAAGGAGCTTTGCCAC 58.432 57.895 7.47 0.00 0.00 5.01
19 20 0.038310 GGGTAAGGAGCTTTGCCACT 59.962 55.000 7.47 0.00 0.00 4.00
20 21 1.547901 GGGTAAGGAGCTTTGCCACTT 60.548 52.381 7.47 0.00 0.00 3.16
21 22 1.813178 GGTAAGGAGCTTTGCCACTTC 59.187 52.381 0.79 0.00 0.00 3.01
22 23 2.553247 GGTAAGGAGCTTTGCCACTTCT 60.553 50.000 0.79 0.00 0.00 2.85
23 24 3.307480 GGTAAGGAGCTTTGCCACTTCTA 60.307 47.826 0.79 0.00 0.00 2.10
24 25 3.728385 AAGGAGCTTTGCCACTTCTAT 57.272 42.857 0.00 0.00 0.00 1.98
25 26 3.274095 AGGAGCTTTGCCACTTCTATC 57.726 47.619 0.00 0.00 0.00 2.08
26 27 2.843113 AGGAGCTTTGCCACTTCTATCT 59.157 45.455 0.00 0.00 0.00 1.98
27 28 3.265479 AGGAGCTTTGCCACTTCTATCTT 59.735 43.478 0.00 0.00 0.00 2.40
28 29 3.376546 GGAGCTTTGCCACTTCTATCTTG 59.623 47.826 0.00 0.00 0.00 3.02
29 30 3.350833 AGCTTTGCCACTTCTATCTTGG 58.649 45.455 0.00 0.00 0.00 3.61
34 35 2.338577 CCACTTCTATCTTGGCCCAG 57.661 55.000 0.00 0.00 0.00 4.45
35 36 1.839994 CCACTTCTATCTTGGCCCAGA 59.160 52.381 9.32 9.32 0.00 3.86
36 37 2.420687 CCACTTCTATCTTGGCCCAGAC 60.421 54.545 9.06 0.00 0.00 3.51
37 38 2.503356 CACTTCTATCTTGGCCCAGACT 59.497 50.000 9.06 1.64 0.00 3.24
38 39 2.769095 ACTTCTATCTTGGCCCAGACTC 59.231 50.000 9.06 0.00 0.00 3.36
39 40 2.550277 TCTATCTTGGCCCAGACTCA 57.450 50.000 9.06 0.00 0.00 3.41
40 41 2.392662 TCTATCTTGGCCCAGACTCAG 58.607 52.381 9.06 7.09 0.00 3.35
41 42 2.023984 TCTATCTTGGCCCAGACTCAGA 60.024 50.000 9.06 9.29 0.00 3.27
42 43 1.890552 ATCTTGGCCCAGACTCAGAT 58.109 50.000 9.06 0.00 0.00 2.90
43 44 2.550277 TCTTGGCCCAGACTCAGATA 57.450 50.000 1.49 0.00 0.00 1.98
44 45 3.051940 TCTTGGCCCAGACTCAGATAT 57.948 47.619 1.49 0.00 0.00 1.63
45 46 4.199002 TCTTGGCCCAGACTCAGATATA 57.801 45.455 1.49 0.00 0.00 0.86
46 47 4.155709 TCTTGGCCCAGACTCAGATATAG 58.844 47.826 1.49 0.00 0.00 1.31
47 48 3.619900 TGGCCCAGACTCAGATATAGT 57.380 47.619 0.00 0.00 0.00 2.12
48 49 3.928754 TGGCCCAGACTCAGATATAGTT 58.071 45.455 0.00 0.00 0.00 2.24
49 50 5.074746 TGGCCCAGACTCAGATATAGTTA 57.925 43.478 0.00 0.00 0.00 2.24
50 51 4.833380 TGGCCCAGACTCAGATATAGTTAC 59.167 45.833 0.00 0.00 0.00 2.50
51 52 4.221041 GGCCCAGACTCAGATATAGTTACC 59.779 50.000 0.00 0.00 0.00 2.85
52 53 5.081032 GCCCAGACTCAGATATAGTTACCT 58.919 45.833 0.00 0.00 0.00 3.08
53 54 5.540719 GCCCAGACTCAGATATAGTTACCTT 59.459 44.000 0.00 0.00 0.00 3.50
54 55 6.720288 GCCCAGACTCAGATATAGTTACCTTA 59.280 42.308 0.00 0.00 0.00 2.69
55 56 7.397761 GCCCAGACTCAGATATAGTTACCTTAT 59.602 40.741 0.00 0.00 0.00 1.73
56 57 9.976776 CCCAGACTCAGATATAGTTACCTTATA 57.023 37.037 0.00 0.00 0.00 0.98
71 72 9.054580 AGTTACCTTATAAAACTCTACATGGGT 57.945 33.333 0.00 0.00 0.00 4.51
72 73 9.676861 GTTACCTTATAAAACTCTACATGGGTT 57.323 33.333 0.00 0.00 0.00 4.11
73 74 9.895138 TTACCTTATAAAACTCTACATGGGTTC 57.105 33.333 0.00 0.00 0.00 3.62
74 75 7.924541 ACCTTATAAAACTCTACATGGGTTCA 58.075 34.615 0.00 0.00 0.00 3.18
75 76 8.557450 ACCTTATAAAACTCTACATGGGTTCAT 58.443 33.333 0.00 0.00 0.00 2.57
76 77 9.057089 CCTTATAAAACTCTACATGGGTTCATC 57.943 37.037 0.00 0.00 0.00 2.92
77 78 9.838339 CTTATAAAACTCTACATGGGTTCATCT 57.162 33.333 0.00 0.00 0.00 2.90
78 79 9.832445 TTATAAAACTCTACATGGGTTCATCTC 57.168 33.333 0.00 0.00 0.00 2.75
79 80 4.392921 AACTCTACATGGGTTCATCTCG 57.607 45.455 0.00 0.00 0.00 4.04
80 81 3.632333 ACTCTACATGGGTTCATCTCGA 58.368 45.455 0.00 0.00 0.00 4.04
81 82 3.381908 ACTCTACATGGGTTCATCTCGAC 59.618 47.826 0.00 0.00 0.00 4.20
82 83 2.357952 TCTACATGGGTTCATCTCGACG 59.642 50.000 0.00 0.00 0.00 5.12
83 84 0.460284 ACATGGGTTCATCTCGACGC 60.460 55.000 0.00 0.00 0.00 5.19
84 85 0.179100 CATGGGTTCATCTCGACGCT 60.179 55.000 0.00 0.00 0.00 5.07
85 86 0.103208 ATGGGTTCATCTCGACGCTC 59.897 55.000 0.00 0.00 0.00 5.03
86 87 0.965866 TGGGTTCATCTCGACGCTCT 60.966 55.000 0.00 0.00 0.00 4.09
87 88 0.173708 GGGTTCATCTCGACGCTCTT 59.826 55.000 0.00 0.00 0.00 2.85
88 89 1.272781 GGTTCATCTCGACGCTCTTG 58.727 55.000 0.00 0.00 0.00 3.02
89 90 1.135373 GGTTCATCTCGACGCTCTTGA 60.135 52.381 0.00 0.00 0.00 3.02
90 91 1.914700 GTTCATCTCGACGCTCTTGAC 59.085 52.381 0.00 0.00 0.00 3.18
91 92 0.452184 TCATCTCGACGCTCTTGACC 59.548 55.000 0.00 0.00 0.00 4.02
92 93 0.453793 CATCTCGACGCTCTTGACCT 59.546 55.000 0.00 0.00 0.00 3.85
93 94 0.453793 ATCTCGACGCTCTTGACCTG 59.546 55.000 0.00 0.00 0.00 4.00
94 95 0.605589 TCTCGACGCTCTTGACCTGA 60.606 55.000 0.00 0.00 0.00 3.86
95 96 0.455295 CTCGACGCTCTTGACCTGAC 60.455 60.000 0.00 0.00 0.00 3.51
96 97 1.444553 CGACGCTCTTGACCTGACC 60.445 63.158 0.00 0.00 0.00 4.02
97 98 1.666011 GACGCTCTTGACCTGACCA 59.334 57.895 0.00 0.00 0.00 4.02
98 99 0.033504 GACGCTCTTGACCTGACCAA 59.966 55.000 0.00 0.00 0.00 3.67
99 100 0.687354 ACGCTCTTGACCTGACCAAT 59.313 50.000 0.00 0.00 0.00 3.16
100 101 1.072331 ACGCTCTTGACCTGACCAATT 59.928 47.619 0.00 0.00 0.00 2.32
101 102 2.154462 CGCTCTTGACCTGACCAATTT 58.846 47.619 0.00 0.00 0.00 1.82
102 103 2.554032 CGCTCTTGACCTGACCAATTTT 59.446 45.455 0.00 0.00 0.00 1.82
103 104 3.004734 CGCTCTTGACCTGACCAATTTTT 59.995 43.478 0.00 0.00 0.00 1.94
104 105 4.550422 GCTCTTGACCTGACCAATTTTTC 58.450 43.478 0.00 0.00 0.00 2.29
105 106 4.037923 GCTCTTGACCTGACCAATTTTTCA 59.962 41.667 0.00 0.00 0.00 2.69
106 107 5.279156 GCTCTTGACCTGACCAATTTTTCAT 60.279 40.000 0.00 0.00 0.00 2.57
107 108 6.088016 TCTTGACCTGACCAATTTTTCATG 57.912 37.500 0.00 0.00 0.00 3.07
108 109 4.255833 TGACCTGACCAATTTTTCATGC 57.744 40.909 0.00 0.00 0.00 4.06
109 110 3.896888 TGACCTGACCAATTTTTCATGCT 59.103 39.130 0.00 0.00 0.00 3.79
110 111 5.076182 TGACCTGACCAATTTTTCATGCTA 58.924 37.500 0.00 0.00 0.00 3.49
111 112 5.048083 TGACCTGACCAATTTTTCATGCTAC 60.048 40.000 0.00 0.00 0.00 3.58
112 113 4.220602 ACCTGACCAATTTTTCATGCTACC 59.779 41.667 0.00 0.00 0.00 3.18
113 114 4.220382 CCTGACCAATTTTTCATGCTACCA 59.780 41.667 0.00 0.00 0.00 3.25
114 115 5.389859 TGACCAATTTTTCATGCTACCAG 57.610 39.130 0.00 0.00 0.00 4.00
115 116 5.076182 TGACCAATTTTTCATGCTACCAGA 58.924 37.500 0.00 0.00 0.00 3.86
116 117 5.716228 TGACCAATTTTTCATGCTACCAGAT 59.284 36.000 0.00 0.00 0.00 2.90
117 118 6.127647 TGACCAATTTTTCATGCTACCAGATC 60.128 38.462 0.00 0.00 0.00 2.75
118 119 5.954150 ACCAATTTTTCATGCTACCAGATCT 59.046 36.000 0.00 0.00 0.00 2.75
119 120 6.127535 ACCAATTTTTCATGCTACCAGATCTG 60.128 38.462 16.24 16.24 0.00 2.90
120 121 4.970662 TTTTTCATGCTACCAGATCTGC 57.029 40.909 17.76 6.51 0.00 4.26
121 122 3.920231 TTTCATGCTACCAGATCTGCT 57.080 42.857 17.76 6.48 0.00 4.24
122 123 5.357742 TTTTCATGCTACCAGATCTGCTA 57.642 39.130 17.76 7.39 0.00 3.49
123 124 5.557576 TTTCATGCTACCAGATCTGCTAT 57.442 39.130 17.76 7.35 0.00 2.97
124 125 4.532314 TCATGCTACCAGATCTGCTATG 57.468 45.455 17.76 14.52 0.00 2.23
125 126 3.260128 TCATGCTACCAGATCTGCTATGG 59.740 47.826 17.76 6.80 42.29 2.74
126 127 1.973515 TGCTACCAGATCTGCTATGGG 59.026 52.381 17.76 5.05 40.79 4.00
127 128 1.338579 GCTACCAGATCTGCTATGGGC 60.339 57.143 17.76 10.57 40.79 5.36
128 129 2.255406 CTACCAGATCTGCTATGGGCT 58.745 52.381 17.76 0.00 40.79 5.19
129 130 1.055040 ACCAGATCTGCTATGGGCTC 58.945 55.000 17.76 0.00 40.79 4.70
130 131 0.037512 CCAGATCTGCTATGGGCTCG 60.038 60.000 17.76 0.00 42.39 5.03
131 132 0.037512 CAGATCTGCTATGGGCTCGG 60.038 60.000 10.38 0.00 42.39 4.63
132 133 0.178950 AGATCTGCTATGGGCTCGGA 60.179 55.000 0.00 0.00 42.39 4.55
133 134 0.681733 GATCTGCTATGGGCTCGGAA 59.318 55.000 0.00 0.00 42.39 4.30
134 135 1.277557 GATCTGCTATGGGCTCGGAAT 59.722 52.381 0.00 0.00 42.39 3.01
135 136 0.394192 TCTGCTATGGGCTCGGAATG 59.606 55.000 0.00 0.00 42.39 2.67
136 137 0.604780 CTGCTATGGGCTCGGAATGG 60.605 60.000 0.00 0.00 42.39 3.16
137 138 1.344953 TGCTATGGGCTCGGAATGGT 61.345 55.000 0.00 0.00 42.39 3.55
138 139 0.685097 GCTATGGGCTCGGAATGGTA 59.315 55.000 0.00 0.00 38.06 3.25
139 140 1.608283 GCTATGGGCTCGGAATGGTAC 60.608 57.143 0.00 0.00 38.06 3.34
140 141 4.187689 GCTATGGGCTCGGAATGGTACA 62.188 54.545 0.00 0.00 39.97 2.90
141 142 5.624145 GCTATGGGCTCGGAATGGTACAA 62.624 52.174 0.00 0.00 39.30 2.41
157 158 5.928976 TGGTACAAATCTGAGATACCATGG 58.071 41.667 11.19 11.19 40.24 3.66
158 159 5.665360 TGGTACAAATCTGAGATACCATGGA 59.335 40.000 21.47 2.01 40.24 3.41
159 160 6.329986 TGGTACAAATCTGAGATACCATGGAT 59.670 38.462 21.47 7.62 40.24 3.41
160 161 7.147320 TGGTACAAATCTGAGATACCATGGATT 60.147 37.037 21.47 4.58 40.24 3.01
161 162 7.721399 GGTACAAATCTGAGATACCATGGATTT 59.279 37.037 21.47 8.34 36.18 2.17
162 163 9.125026 GTACAAATCTGAGATACCATGGATTTT 57.875 33.333 21.47 0.00 33.11 1.82
163 164 8.004087 ACAAATCTGAGATACCATGGATTTTG 57.996 34.615 21.47 14.43 33.11 2.44
164 165 7.616935 ACAAATCTGAGATACCATGGATTTTGT 59.383 33.333 21.47 14.97 33.11 2.83
165 166 7.578310 AATCTGAGATACCATGGATTTTGTG 57.422 36.000 21.47 3.74 0.00 3.33
166 167 4.883585 TCTGAGATACCATGGATTTTGTGC 59.116 41.667 21.47 0.29 0.00 4.57
167 168 3.953612 TGAGATACCATGGATTTTGTGCC 59.046 43.478 21.47 0.00 0.00 5.01
168 169 3.953612 GAGATACCATGGATTTTGTGCCA 59.046 43.478 21.47 0.00 38.78 4.92
169 170 4.549668 AGATACCATGGATTTTGTGCCAT 58.450 39.130 21.47 0.00 45.47 4.40
170 171 5.704354 AGATACCATGGATTTTGTGCCATA 58.296 37.500 21.47 0.00 42.81 2.74
171 172 5.536161 AGATACCATGGATTTTGTGCCATAC 59.464 40.000 21.47 0.00 42.81 2.39
172 173 3.439154 ACCATGGATTTTGTGCCATACA 58.561 40.909 21.47 0.00 42.81 2.29
186 187 6.435430 GTGCCATACACTGATATGTTTCAA 57.565 37.500 0.00 0.00 46.41 2.69
187 188 6.258160 GTGCCATACACTGATATGTTTCAAC 58.742 40.000 0.00 0.00 46.41 3.18
188 189 6.094048 GTGCCATACACTGATATGTTTCAACT 59.906 38.462 0.00 0.00 46.41 3.16
189 190 7.279981 GTGCCATACACTGATATGTTTCAACTA 59.720 37.037 0.00 0.00 46.41 2.24
190 191 7.826744 TGCCATACACTGATATGTTTCAACTAA 59.173 33.333 0.00 0.00 33.85 2.24
191 192 8.673711 GCCATACACTGATATGTTTCAACTAAA 58.326 33.333 0.00 0.00 33.85 1.85
192 193 9.988350 CCATACACTGATATGTTTCAACTAAAC 57.012 33.333 0.00 0.00 46.46 2.01
193 194 9.988350 CATACACTGATATGTTTCAACTAAACC 57.012 33.333 0.00 0.00 45.83 3.27
194 195 9.959721 ATACACTGATATGTTTCAACTAAACCT 57.040 29.630 0.00 0.00 45.83 3.50
196 197 9.787435 ACACTGATATGTTTCAACTAAACCTAA 57.213 29.630 0.00 0.00 45.83 2.69
200 201 9.226606 TGATATGTTTCAACTAAACCTAACTGG 57.773 33.333 0.00 0.00 45.83 4.00
201 202 6.894339 ATGTTTCAACTAAACCTAACTGGG 57.106 37.500 0.00 0.00 45.83 4.45
202 203 5.757988 TGTTTCAACTAAACCTAACTGGGT 58.242 37.500 0.00 0.00 45.83 4.51
203 204 5.591067 TGTTTCAACTAAACCTAACTGGGTG 59.409 40.000 0.00 0.00 45.83 4.61
204 205 5.376756 TTCAACTAAACCTAACTGGGTGT 57.623 39.130 0.00 0.00 39.85 4.16
205 206 4.710324 TCAACTAAACCTAACTGGGTGTG 58.290 43.478 0.00 0.00 39.85 3.82
206 207 3.136009 ACTAAACCTAACTGGGTGTGC 57.864 47.619 0.00 0.00 39.85 4.57
207 208 2.224695 ACTAAACCTAACTGGGTGTGCC 60.225 50.000 0.00 0.00 39.85 5.01
217 218 2.763215 GGTGTGCCCTTCCCATCA 59.237 61.111 0.00 0.00 0.00 3.07
218 219 1.307647 GGTGTGCCCTTCCCATCAT 59.692 57.895 0.00 0.00 0.00 2.45
219 220 0.550914 GGTGTGCCCTTCCCATCATA 59.449 55.000 0.00 0.00 0.00 2.15
220 221 1.680338 GTGTGCCCTTCCCATCATAC 58.320 55.000 0.00 0.00 0.00 2.39
221 222 1.212935 GTGTGCCCTTCCCATCATACT 59.787 52.381 0.00 0.00 0.00 2.12
222 223 1.490490 TGTGCCCTTCCCATCATACTC 59.510 52.381 0.00 0.00 0.00 2.59
223 224 1.140312 TGCCCTTCCCATCATACTCC 58.860 55.000 0.00 0.00 0.00 3.85
224 225 1.345422 TGCCCTTCCCATCATACTCCT 60.345 52.381 0.00 0.00 0.00 3.69
225 226 1.349357 GCCCTTCCCATCATACTCCTC 59.651 57.143 0.00 0.00 0.00 3.71
226 227 1.620819 CCCTTCCCATCATACTCCTCG 59.379 57.143 0.00 0.00 0.00 4.63
227 228 2.598565 CCTTCCCATCATACTCCTCGA 58.401 52.381 0.00 0.00 0.00 4.04
228 229 3.169099 CCTTCCCATCATACTCCTCGAT 58.831 50.000 0.00 0.00 0.00 3.59
229 230 3.194542 CCTTCCCATCATACTCCTCGATC 59.805 52.174 0.00 0.00 0.00 3.69
230 231 3.525800 TCCCATCATACTCCTCGATCA 57.474 47.619 0.00 0.00 0.00 2.92
231 232 4.053009 TCCCATCATACTCCTCGATCAT 57.947 45.455 0.00 0.00 0.00 2.45
232 233 4.019858 TCCCATCATACTCCTCGATCATC 58.980 47.826 0.00 0.00 0.00 2.92
233 234 3.766051 CCCATCATACTCCTCGATCATCA 59.234 47.826 0.00 0.00 0.00 3.07
234 235 4.381398 CCCATCATACTCCTCGATCATCAC 60.381 50.000 0.00 0.00 0.00 3.06
235 236 4.381398 CCATCATACTCCTCGATCATCACC 60.381 50.000 0.00 0.00 0.00 4.02
236 237 3.157881 TCATACTCCTCGATCATCACCC 58.842 50.000 0.00 0.00 0.00 4.61
237 238 2.748209 TACTCCTCGATCATCACCCA 57.252 50.000 0.00 0.00 0.00 4.51
238 239 1.866015 ACTCCTCGATCATCACCCAA 58.134 50.000 0.00 0.00 0.00 4.12
239 240 2.187958 ACTCCTCGATCATCACCCAAA 58.812 47.619 0.00 0.00 0.00 3.28
240 241 2.093447 ACTCCTCGATCATCACCCAAAC 60.093 50.000 0.00 0.00 0.00 2.93
241 242 1.209504 TCCTCGATCATCACCCAAACC 59.790 52.381 0.00 0.00 0.00 3.27
242 243 1.668419 CTCGATCATCACCCAAACCC 58.332 55.000 0.00 0.00 0.00 4.11
243 244 0.254747 TCGATCATCACCCAAACCCC 59.745 55.000 0.00 0.00 0.00 4.95
244 245 0.034574 CGATCATCACCCAAACCCCA 60.035 55.000 0.00 0.00 0.00 4.96
245 246 1.767759 GATCATCACCCAAACCCCAG 58.232 55.000 0.00 0.00 0.00 4.45
246 247 0.336048 ATCATCACCCAAACCCCAGG 59.664 55.000 0.00 0.00 0.00 4.45
247 248 0.774096 TCATCACCCAAACCCCAGGA 60.774 55.000 0.00 0.00 0.00 3.86
248 249 0.114168 CATCACCCAAACCCCAGGAA 59.886 55.000 0.00 0.00 0.00 3.36
249 250 0.863956 ATCACCCAAACCCCAGGAAA 59.136 50.000 0.00 0.00 0.00 3.13
250 251 0.863956 TCACCCAAACCCCAGGAAAT 59.136 50.000 0.00 0.00 0.00 2.17
251 252 1.203125 TCACCCAAACCCCAGGAAATC 60.203 52.381 0.00 0.00 0.00 2.17
252 253 0.116342 ACCCAAACCCCAGGAAATCC 59.884 55.000 0.00 0.00 0.00 3.01
253 254 0.116143 CCCAAACCCCAGGAAATCCA 59.884 55.000 1.67 0.00 38.89 3.41
254 255 1.484065 CCCAAACCCCAGGAAATCCAA 60.484 52.381 1.67 0.00 38.89 3.53
255 256 2.550175 CCAAACCCCAGGAAATCCAAT 58.450 47.619 1.67 0.00 38.89 3.16
256 257 2.236893 CCAAACCCCAGGAAATCCAATG 59.763 50.000 1.67 0.00 38.89 2.82
257 258 1.571955 AACCCCAGGAAATCCAATGC 58.428 50.000 1.67 0.00 38.89 3.56
258 259 0.325577 ACCCCAGGAAATCCAATGCC 60.326 55.000 1.67 0.00 38.89 4.40
259 260 1.050421 CCCCAGGAAATCCAATGCCC 61.050 60.000 1.67 0.00 38.89 5.36
260 261 1.050421 CCCAGGAAATCCAATGCCCC 61.050 60.000 1.67 0.00 38.89 5.80
261 262 0.031817 CCAGGAAATCCAATGCCCCT 60.032 55.000 1.67 0.00 38.89 4.79
262 263 1.217689 CCAGGAAATCCAATGCCCCTA 59.782 52.381 1.67 0.00 38.89 3.53
263 264 2.359143 CCAGGAAATCCAATGCCCCTAA 60.359 50.000 1.67 0.00 38.89 2.69
264 265 3.373830 CAGGAAATCCAATGCCCCTAAA 58.626 45.455 1.67 0.00 38.89 1.85
265 266 3.385755 CAGGAAATCCAATGCCCCTAAAG 59.614 47.826 1.67 0.00 38.89 1.85
266 267 2.103094 GGAAATCCAATGCCCCTAAAGC 59.897 50.000 0.00 0.00 35.64 3.51
267 268 2.548464 AATCCAATGCCCCTAAAGCA 57.452 45.000 0.00 0.00 45.94 3.91
274 275 2.530460 TGCCCCTAAAGCATGATGTT 57.470 45.000 0.00 0.00 34.69 2.71
275 276 2.101783 TGCCCCTAAAGCATGATGTTG 58.898 47.619 0.00 0.00 34.69 3.33
276 277 2.102578 GCCCCTAAAGCATGATGTTGT 58.897 47.619 0.00 0.00 0.00 3.32
277 278 2.497273 GCCCCTAAAGCATGATGTTGTT 59.503 45.455 0.00 0.00 0.00 2.83
278 279 3.699038 GCCCCTAAAGCATGATGTTGTTA 59.301 43.478 0.00 0.00 0.00 2.41
279 280 4.342092 GCCCCTAAAGCATGATGTTGTTAT 59.658 41.667 0.00 0.00 0.00 1.89
280 281 5.534654 GCCCCTAAAGCATGATGTTGTTATA 59.465 40.000 0.00 0.00 0.00 0.98
281 282 6.040391 GCCCCTAAAGCATGATGTTGTTATAA 59.960 38.462 0.00 0.00 0.00 0.98
282 283 7.255942 GCCCCTAAAGCATGATGTTGTTATAAT 60.256 37.037 0.00 0.00 0.00 1.28
283 284 8.299570 CCCCTAAAGCATGATGTTGTTATAATC 58.700 37.037 0.00 0.00 0.00 1.75
284 285 9.071276 CCCTAAAGCATGATGTTGTTATAATCT 57.929 33.333 0.00 0.00 0.00 2.40
287 288 8.757982 AAAGCATGATGTTGTTATAATCTCCT 57.242 30.769 0.00 0.00 0.00 3.69
288 289 9.851686 AAAGCATGATGTTGTTATAATCTCCTA 57.148 29.630 0.00 0.00 0.00 2.94
289 290 9.851686 AAGCATGATGTTGTTATAATCTCCTAA 57.148 29.630 0.00 0.00 0.00 2.69
290 291 9.851686 AGCATGATGTTGTTATAATCTCCTAAA 57.148 29.630 0.00 0.00 0.00 1.85
304 305 6.765915 ATCTCCTAAAGAAAACATTGGAGC 57.234 37.500 0.00 0.00 39.36 4.70
305 306 5.630121 TCTCCTAAAGAAAACATTGGAGCA 58.370 37.500 0.00 0.00 39.36 4.26
306 307 5.473504 TCTCCTAAAGAAAACATTGGAGCAC 59.526 40.000 0.00 0.00 39.36 4.40
307 308 4.215399 TCCTAAAGAAAACATTGGAGCACG 59.785 41.667 0.00 0.00 0.00 5.34
308 309 4.215399 CCTAAAGAAAACATTGGAGCACGA 59.785 41.667 0.00 0.00 0.00 4.35
309 310 4.647424 AAAGAAAACATTGGAGCACGAA 57.353 36.364 0.00 0.00 0.00 3.85
310 311 3.904136 AGAAAACATTGGAGCACGAAG 57.096 42.857 0.00 0.00 0.00 3.79
311 312 3.476552 AGAAAACATTGGAGCACGAAGA 58.523 40.909 0.00 0.00 0.00 2.87
312 313 3.499918 AGAAAACATTGGAGCACGAAGAG 59.500 43.478 0.00 0.00 0.00 2.85
313 314 1.813513 AACATTGGAGCACGAAGAGG 58.186 50.000 0.00 0.00 0.00 3.69
314 315 0.674895 ACATTGGAGCACGAAGAGGC 60.675 55.000 0.00 0.00 0.00 4.70
315 316 0.392193 CATTGGAGCACGAAGAGGCT 60.392 55.000 0.00 0.00 43.22 4.58
316 317 1.134699 CATTGGAGCACGAAGAGGCTA 60.135 52.381 0.00 0.00 41.05 3.93
317 318 1.195115 TTGGAGCACGAAGAGGCTAT 58.805 50.000 0.00 0.00 41.05 2.97
318 319 0.747255 TGGAGCACGAAGAGGCTATC 59.253 55.000 0.00 0.00 41.05 2.08
319 320 0.747255 GGAGCACGAAGAGGCTATCA 59.253 55.000 0.00 0.00 41.05 2.15
320 321 1.342819 GGAGCACGAAGAGGCTATCAT 59.657 52.381 0.00 0.00 41.05 2.45
321 322 2.609244 GGAGCACGAAGAGGCTATCATC 60.609 54.545 0.00 0.00 41.05 2.92
322 323 2.034878 AGCACGAAGAGGCTATCATCA 58.965 47.619 0.00 0.00 39.50 3.07
323 324 2.432146 AGCACGAAGAGGCTATCATCAA 59.568 45.455 0.00 0.00 39.50 2.57
324 325 2.799412 GCACGAAGAGGCTATCATCAAG 59.201 50.000 0.00 0.00 0.00 3.02
325 326 2.799412 CACGAAGAGGCTATCATCAAGC 59.201 50.000 0.00 0.00 39.33 4.01
326 327 2.697751 ACGAAGAGGCTATCATCAAGCT 59.302 45.455 0.00 0.00 39.97 3.74
327 328 3.243704 ACGAAGAGGCTATCATCAAGCTC 60.244 47.826 0.00 0.00 39.97 4.09
328 329 3.663025 GAAGAGGCTATCATCAAGCTCC 58.337 50.000 0.00 0.00 39.97 4.70
329 330 1.977129 AGAGGCTATCATCAAGCTCCC 59.023 52.381 0.00 0.00 39.97 4.30
330 331 1.977129 GAGGCTATCATCAAGCTCCCT 59.023 52.381 0.00 0.00 39.97 4.20
331 332 1.698532 AGGCTATCATCAAGCTCCCTG 59.301 52.381 0.00 0.00 39.97 4.45
332 333 1.696336 GGCTATCATCAAGCTCCCTGA 59.304 52.381 0.00 0.00 39.97 3.86
333 334 2.305343 GGCTATCATCAAGCTCCCTGAT 59.695 50.000 9.12 9.12 39.97 2.90
334 335 3.244840 GGCTATCATCAAGCTCCCTGATT 60.245 47.826 9.35 0.00 39.97 2.57
335 336 4.396522 GCTATCATCAAGCTCCCTGATTT 58.603 43.478 9.35 0.00 37.01 2.17
336 337 4.826183 GCTATCATCAAGCTCCCTGATTTT 59.174 41.667 9.35 0.00 37.01 1.82
339 340 6.705863 ATCATCAAGCTCCCTGATTTTAAC 57.294 37.500 0.00 0.00 0.00 2.01
345 346 5.665916 AGCTCCCTGATTTTAACCAAATG 57.334 39.130 0.00 0.00 35.02 2.32
509 520 9.248291 TGAAAACTCTTCATGCAATTTTAAGAC 57.752 29.630 0.00 0.00 0.00 3.01
575 586 6.713450 AGGTGGTCACGTATTTCTAAAAATGT 59.287 34.615 0.00 0.00 35.84 2.71
631 642 9.823647 TTTTGAAAACCATACAGATTTAGCAAA 57.176 25.926 0.00 0.00 0.00 3.68
795 880 3.294943 CGATCCACTCGGTTATACGAAC 58.705 50.000 0.00 0.00 43.82 3.95
803 888 2.487762 TCGGTTATACGAACAAGACGGT 59.512 45.455 0.00 0.00 40.34 4.83
826 911 7.278424 CGGTCCGTTAGAACTATTTCCAAATTA 59.722 37.037 2.08 0.00 31.28 1.40
863 948 2.024319 GACTGCGAGTGTCCACTGC 61.024 63.158 4.35 9.30 42.66 4.40
865 950 3.231889 CTGCGAGTGTCCACTGCCT 62.232 63.158 4.35 0.00 42.66 4.75
911 996 4.642466 AAAAACAACCAGTGGGGAAAAA 57.358 36.364 15.21 0.00 41.15 1.94
1583 1671 9.050601 TGGTTTAAGCATTTTACAATTTTCAGG 57.949 29.630 0.00 0.00 0.00 3.86
1706 1794 1.442769 CTGTGTTTGGTAGCAGCGAT 58.557 50.000 0.00 0.00 0.00 4.58
1723 1811 4.922692 CAGCGATCTAGATCTTGATGTTCC 59.077 45.833 26.29 8.52 35.72 3.62
1725 1813 5.048083 AGCGATCTAGATCTTGATGTTCCTC 60.048 44.000 26.29 8.39 35.72 3.71
1727 1815 5.049060 CGATCTAGATCTTGATGTTCCTCGT 60.049 44.000 26.29 0.00 35.72 4.18
1742 1830 3.014623 TCCTCGTAATGTCGTCATCACT 58.985 45.455 0.00 0.00 32.56 3.41
1890 1978 6.476706 GGTATTAATGATTTTCAGGCTGTTGC 59.523 38.462 15.27 1.85 38.76 4.17
1904 1992 1.813753 GTTGCCGCGCTCTATTCCA 60.814 57.895 5.56 0.00 0.00 3.53
1939 2027 2.681344 GTTTGTCAACTCGGAACACCTT 59.319 45.455 0.00 0.00 0.00 3.50
1959 2047 7.389053 ACACCTTGAGCTTTAGTTTTCTATCAG 59.611 37.037 0.00 0.00 31.96 2.90
2099 2187 9.887862 ATGAATATTTCAGTCCCAATTCCTAAT 57.112 29.630 0.00 0.00 43.98 1.73
2126 2214 5.745312 TCTCTGCCTTCTTGACATTCTTA 57.255 39.130 0.00 0.00 0.00 2.10
2157 2245 4.981812 AGGATATTAAAACTTAGGCCGGG 58.018 43.478 2.18 0.00 0.00 5.73
2219 2307 4.045636 CCAACTGGCCATTGCTTAATAC 57.954 45.455 5.51 0.00 37.74 1.89
2275 2363 0.749454 AGATTTGTCATGGGCCGAGC 60.749 55.000 0.00 0.00 0.00 5.03
2348 2436 7.661040 AGATCACCCTTTTAACATTGTTGAAG 58.339 34.615 12.30 14.09 0.00 3.02
2652 2740 4.368315 CGGCTGTTGTATATGCTGTAAGA 58.632 43.478 0.00 0.00 34.07 2.10
2725 2814 4.775780 ACATGTATGTAGTACTGTGGTGGT 59.224 41.667 5.39 0.00 39.68 4.16
2766 2857 4.941263 TGCAATAAGCTAGTTTGTGTAGGG 59.059 41.667 1.54 0.00 45.94 3.53
2801 2895 4.646572 TGACGCATGCCACCATAAATATA 58.353 39.130 13.15 0.00 0.00 0.86
3100 3195 9.930693 CAGACCTCTTCTACTTACTTGTTAATT 57.069 33.333 0.00 0.00 31.12 1.40
3172 3276 6.566079 ACCATCTGATAATCTGAAAGGTCA 57.434 37.500 0.00 0.00 34.31 4.02
3179 3283 9.206690 TCTGATAATCTGAAAGGTCAATAGTCT 57.793 33.333 0.00 0.00 31.88 3.24
3251 3362 8.868522 ATGTTTACCATCTCTTTTGATCTGAA 57.131 30.769 0.00 0.00 0.00 3.02
3268 3381 6.592994 TGATCTGAAGTAATCTGCTCTGTTTG 59.407 38.462 0.00 0.00 0.00 2.93
3327 3440 4.013728 GTTTATACATTGTCACCTGGGCA 58.986 43.478 0.00 0.00 0.00 5.36
3332 3445 2.050836 ATTGTCACCTGGGCACGACA 62.051 55.000 0.00 2.60 36.63 4.35
3334 3447 1.741770 GTCACCTGGGCACGACATC 60.742 63.158 0.00 0.00 0.00 3.06
3380 3493 6.300354 AGTACCTTATGTAAAATGCGCATC 57.700 37.500 25.53 11.81 0.00 3.91
3390 3503 3.762429 ATGCGCATCGGAGCCATGT 62.762 57.895 19.28 0.00 39.30 3.21
3394 3507 1.450134 GCATCGGAGCCATGTGACA 60.450 57.895 0.00 0.00 0.00 3.58
3424 3537 3.262405 TCAAGTCATAAAGGGCGGTAACT 59.738 43.478 0.00 0.00 0.00 2.24
3426 3539 3.606687 AGTCATAAAGGGCGGTAACTTG 58.393 45.455 0.00 0.00 0.00 3.16
3453 3566 3.500471 CCAGGCCCTTTATATCCCTTTCC 60.500 52.174 0.00 0.00 0.00 3.13
3488 3601 2.751259 TGCCACATGAATCTTGAGAAGC 59.249 45.455 0.00 1.51 0.00 3.86
3494 3607 3.777106 TGAATCTTGAGAAGCTGGTGT 57.223 42.857 0.00 0.00 0.00 4.16
3496 3609 4.464008 TGAATCTTGAGAAGCTGGTGTTT 58.536 39.130 0.00 0.00 0.00 2.83
3507 3620 5.534654 AGAAGCTGGTGTTTTATGCAACTTA 59.465 36.000 0.00 0.00 0.00 2.24
3593 3706 2.855209 AGTGCTGCAGAGAAGATTGT 57.145 45.000 20.43 0.00 0.00 2.71
3599 3712 3.616379 GCTGCAGAGAAGATTGTACTGAC 59.384 47.826 20.43 0.00 0.00 3.51
3605 3718 5.518128 CAGAGAAGATTGTACTGACGATTGG 59.482 44.000 0.00 0.00 29.01 3.16
3629 3742 0.729116 GATGTTGGCATCTGTGTCGG 59.271 55.000 0.00 0.00 45.97 4.79
3651 3764 4.272991 GGCTGCAGAAAATCATACTCTCAG 59.727 45.833 20.43 0.00 0.00 3.35
3683 3796 7.661847 CCATAGGAGCAGTTAGGTTAATTTAGG 59.338 40.741 0.00 0.00 0.00 2.69
3705 3818 3.368116 GCAAAAGAGAAGCCATGCTCATT 60.368 43.478 0.00 0.00 38.25 2.57
3709 3822 1.334243 GAGAAGCCATGCTCATTCTGC 59.666 52.381 5.12 0.00 38.25 4.26
3714 3827 2.565834 AGCCATGCTCATTCTGCTTTTT 59.434 40.909 0.00 0.00 30.62 1.94
3715 3828 2.928116 GCCATGCTCATTCTGCTTTTTC 59.072 45.455 0.00 0.00 0.00 2.29
3741 3856 4.940046 ACTAACAACATTGAGGATGCTGAG 59.060 41.667 0.00 0.00 39.47 3.35
3755 3873 6.839454 AGGATGCTGAGTTGATGATTCTATT 58.161 36.000 0.00 0.00 0.00 1.73
3784 3902 0.763035 AAGGTAGCACCACCGACTTT 59.237 50.000 7.86 0.00 43.84 2.66
3792 3910 2.550606 GCACCACCGACTTTGTGAAATA 59.449 45.455 0.00 0.00 35.74 1.40
3871 3989 2.932622 GCCAGTGAGGTCATGTGTGTAG 60.933 54.545 0.00 0.00 40.61 2.74
3888 4006 7.047891 TGTGTGTAGAACTTTGAGAGAAATGT 58.952 34.615 0.00 0.00 0.00 2.71
3889 4007 7.552687 TGTGTGTAGAACTTTGAGAGAAATGTT 59.447 33.333 0.00 0.00 32.03 2.71
3890 4008 8.398665 GTGTGTAGAACTTTGAGAGAAATGTTT 58.601 33.333 0.00 0.00 30.18 2.83
3891 4009 8.956426 TGTGTAGAACTTTGAGAGAAATGTTTT 58.044 29.630 0.00 0.00 30.18 2.43
3926 4044 8.993121 ACATCTGTTAAGTTCTTGTAGTTCATG 58.007 33.333 0.00 0.00 0.00 3.07
3936 4054 5.129634 TCTTGTAGTTCATGCCTTGTTTCA 58.870 37.500 0.00 0.00 0.00 2.69
3948 4066 5.647589 TGCCTTGTTTCATACTACTACTCG 58.352 41.667 0.00 0.00 0.00 4.18
4034 4158 4.202111 ACTGCAGGTATGTTTTTCACCAAC 60.202 41.667 19.93 0.00 34.62 3.77
4036 4160 4.160439 TGCAGGTATGTTTTTCACCAACAA 59.840 37.500 0.00 0.00 37.67 2.83
4136 4260 1.273609 ACCTACCCATGCACCACTCTA 60.274 52.381 0.00 0.00 0.00 2.43
4162 4286 5.106436 TGGTCTACTATTATACATCGTGGCG 60.106 44.000 0.00 0.00 0.00 5.69
4188 4312 0.874175 CTATGGCGCGGAAACATCGA 60.874 55.000 8.83 0.00 0.00 3.59
4255 4379 1.513158 CTCGGCCTGAGTGACGAAT 59.487 57.895 14.22 0.00 40.03 3.34
4347 4471 1.292223 CGTCCATCACCACGAACCT 59.708 57.895 0.00 0.00 38.32 3.50
4423 4547 3.367743 CCGTTCCCCTCGACGTCA 61.368 66.667 17.16 1.87 37.56 4.35
4426 4550 1.888018 GTTCCCCTCGACGTCATCA 59.112 57.895 17.16 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.038310 AGTGGCAAAGCTCCTTACCC 59.962 55.000 0.00 0.00 0.00 3.69
1 2 1.813178 GAAGTGGCAAAGCTCCTTACC 59.187 52.381 0.00 0.00 0.00 2.85
2 3 2.784347 AGAAGTGGCAAAGCTCCTTAC 58.216 47.619 0.00 0.00 0.00 2.34
3 4 4.471386 AGATAGAAGTGGCAAAGCTCCTTA 59.529 41.667 0.00 0.00 0.00 2.69
4 5 3.265479 AGATAGAAGTGGCAAAGCTCCTT 59.735 43.478 0.00 0.00 0.00 3.36
5 6 2.843113 AGATAGAAGTGGCAAAGCTCCT 59.157 45.455 0.00 0.00 0.00 3.69
6 7 3.274095 AGATAGAAGTGGCAAAGCTCC 57.726 47.619 0.00 0.00 0.00 4.70
7 8 3.376546 CCAAGATAGAAGTGGCAAAGCTC 59.623 47.826 0.00 0.00 0.00 4.09
8 9 3.350833 CCAAGATAGAAGTGGCAAAGCT 58.649 45.455 0.00 0.00 0.00 3.74
9 10 3.772060 CCAAGATAGAAGTGGCAAAGC 57.228 47.619 0.00 0.00 0.00 3.51
15 16 1.839994 TCTGGGCCAAGATAGAAGTGG 59.160 52.381 5.43 0.00 35.39 4.00
16 17 2.503356 AGTCTGGGCCAAGATAGAAGTG 59.497 50.000 14.56 0.00 0.00 3.16
17 18 2.769095 GAGTCTGGGCCAAGATAGAAGT 59.231 50.000 14.56 0.00 0.00 3.01
18 19 2.768527 TGAGTCTGGGCCAAGATAGAAG 59.231 50.000 14.56 0.00 0.00 2.85
19 20 2.768527 CTGAGTCTGGGCCAAGATAGAA 59.231 50.000 14.56 0.00 0.00 2.10
20 21 2.023984 TCTGAGTCTGGGCCAAGATAGA 60.024 50.000 14.56 14.49 0.00 1.98
21 22 2.392662 TCTGAGTCTGGGCCAAGATAG 58.607 52.381 14.56 12.38 0.00 2.08
22 23 2.550277 TCTGAGTCTGGGCCAAGATA 57.450 50.000 14.56 2.23 0.00 1.98
23 24 1.890552 ATCTGAGTCTGGGCCAAGAT 58.109 50.000 14.56 9.91 0.00 2.40
24 25 2.550277 TATCTGAGTCTGGGCCAAGA 57.450 50.000 5.43 5.43 0.00 3.02
25 26 3.900601 ACTATATCTGAGTCTGGGCCAAG 59.099 47.826 8.04 1.32 0.00 3.61
26 27 3.928754 ACTATATCTGAGTCTGGGCCAA 58.071 45.455 8.04 0.00 0.00 4.52
27 28 3.619900 ACTATATCTGAGTCTGGGCCA 57.380 47.619 5.85 5.85 0.00 5.36
28 29 4.221041 GGTAACTATATCTGAGTCTGGGCC 59.779 50.000 0.00 0.00 0.00 5.80
29 30 5.394224 GGTAACTATATCTGAGTCTGGGC 57.606 47.826 0.00 0.00 0.00 5.36
46 47 9.676861 AACCCATGTAGAGTTTTATAAGGTAAC 57.323 33.333 0.00 0.00 0.00 2.50
47 48 9.895138 GAACCCATGTAGAGTTTTATAAGGTAA 57.105 33.333 0.00 0.00 0.00 2.85
48 49 9.049050 TGAACCCATGTAGAGTTTTATAAGGTA 57.951 33.333 0.00 0.00 0.00 3.08
49 50 7.924541 TGAACCCATGTAGAGTTTTATAAGGT 58.075 34.615 0.00 0.00 0.00 3.50
50 51 8.980481 ATGAACCCATGTAGAGTTTTATAAGG 57.020 34.615 0.00 0.00 0.00 2.69
51 52 9.838339 AGATGAACCCATGTAGAGTTTTATAAG 57.162 33.333 0.00 0.00 32.09 1.73
52 53 9.832445 GAGATGAACCCATGTAGAGTTTTATAA 57.168 33.333 0.00 0.00 32.09 0.98
53 54 8.141909 CGAGATGAACCCATGTAGAGTTTTATA 58.858 37.037 0.00 0.00 32.09 0.98
54 55 6.986817 CGAGATGAACCCATGTAGAGTTTTAT 59.013 38.462 0.00 0.00 32.09 1.40
55 56 6.153851 TCGAGATGAACCCATGTAGAGTTTTA 59.846 38.462 0.00 0.00 32.09 1.52
56 57 5.046591 TCGAGATGAACCCATGTAGAGTTTT 60.047 40.000 0.00 0.00 32.09 2.43
57 58 4.466370 TCGAGATGAACCCATGTAGAGTTT 59.534 41.667 0.00 0.00 32.09 2.66
58 59 4.023980 TCGAGATGAACCCATGTAGAGTT 58.976 43.478 0.00 0.00 32.09 3.01
59 60 3.381908 GTCGAGATGAACCCATGTAGAGT 59.618 47.826 0.00 0.00 30.65 3.24
60 61 3.549019 CGTCGAGATGAACCCATGTAGAG 60.549 52.174 0.00 0.00 30.65 2.43
61 62 2.357952 CGTCGAGATGAACCCATGTAGA 59.642 50.000 0.00 0.00 32.09 2.59
62 63 2.732366 CGTCGAGATGAACCCATGTAG 58.268 52.381 0.00 0.00 32.09 2.74
63 64 1.202371 GCGTCGAGATGAACCCATGTA 60.202 52.381 0.00 0.00 32.09 2.29
64 65 0.460284 GCGTCGAGATGAACCCATGT 60.460 55.000 0.00 0.00 32.09 3.21
65 66 0.179100 AGCGTCGAGATGAACCCATG 60.179 55.000 0.00 0.00 32.09 3.66
66 67 0.103208 GAGCGTCGAGATGAACCCAT 59.897 55.000 0.00 0.00 35.29 4.00
67 68 0.965866 AGAGCGTCGAGATGAACCCA 60.966 55.000 0.00 0.00 0.00 4.51
68 69 0.173708 AAGAGCGTCGAGATGAACCC 59.826 55.000 0.00 0.00 0.00 4.11
69 70 1.135373 TCAAGAGCGTCGAGATGAACC 60.135 52.381 0.00 0.00 0.00 3.62
70 71 1.914700 GTCAAGAGCGTCGAGATGAAC 59.085 52.381 0.00 0.00 0.00 3.18
71 72 1.135373 GGTCAAGAGCGTCGAGATGAA 60.135 52.381 0.00 0.00 0.00 2.57
72 73 0.452184 GGTCAAGAGCGTCGAGATGA 59.548 55.000 0.00 0.00 0.00 2.92
73 74 0.453793 AGGTCAAGAGCGTCGAGATG 59.546 55.000 0.00 0.00 0.00 2.90
74 75 0.453793 CAGGTCAAGAGCGTCGAGAT 59.546 55.000 0.00 0.00 0.00 2.75
75 76 0.605589 TCAGGTCAAGAGCGTCGAGA 60.606 55.000 0.00 0.00 0.00 4.04
76 77 0.455295 GTCAGGTCAAGAGCGTCGAG 60.455 60.000 0.00 0.00 0.00 4.04
77 78 1.579932 GTCAGGTCAAGAGCGTCGA 59.420 57.895 0.00 0.00 0.00 4.20
78 79 1.444553 GGTCAGGTCAAGAGCGTCG 60.445 63.158 0.00 0.00 0.00 5.12
79 80 0.033504 TTGGTCAGGTCAAGAGCGTC 59.966 55.000 0.00 0.00 36.34 5.19
80 81 0.687354 ATTGGTCAGGTCAAGAGCGT 59.313 50.000 0.00 0.00 36.34 5.07
81 82 1.813513 AATTGGTCAGGTCAAGAGCG 58.186 50.000 0.00 0.00 36.34 5.03
82 83 4.037923 TGAAAAATTGGTCAGGTCAAGAGC 59.962 41.667 0.00 0.00 0.00 4.09
83 84 5.772825 TGAAAAATTGGTCAGGTCAAGAG 57.227 39.130 0.00 0.00 0.00 2.85
84 85 5.509501 GCATGAAAAATTGGTCAGGTCAAGA 60.510 40.000 0.00 0.00 0.00 3.02
85 86 4.687483 GCATGAAAAATTGGTCAGGTCAAG 59.313 41.667 0.00 0.00 0.00 3.02
86 87 4.344679 AGCATGAAAAATTGGTCAGGTCAA 59.655 37.500 0.00 0.00 0.00 3.18
87 88 3.896888 AGCATGAAAAATTGGTCAGGTCA 59.103 39.130 0.00 0.00 0.00 4.02
88 89 4.525912 AGCATGAAAAATTGGTCAGGTC 57.474 40.909 0.00 0.04 0.00 3.85
89 90 4.220602 GGTAGCATGAAAAATTGGTCAGGT 59.779 41.667 0.00 3.24 0.00 4.00
90 91 4.220382 TGGTAGCATGAAAAATTGGTCAGG 59.780 41.667 0.00 0.23 0.00 3.86
91 92 5.183713 TCTGGTAGCATGAAAAATTGGTCAG 59.816 40.000 0.00 0.00 0.00 3.51
92 93 5.076182 TCTGGTAGCATGAAAAATTGGTCA 58.924 37.500 0.00 0.00 0.00 4.02
93 94 5.643379 TCTGGTAGCATGAAAAATTGGTC 57.357 39.130 0.00 0.00 0.00 4.02
94 95 5.954150 AGATCTGGTAGCATGAAAAATTGGT 59.046 36.000 0.00 0.00 0.00 3.67
95 96 6.270815 CAGATCTGGTAGCATGAAAAATTGG 58.729 40.000 15.38 0.00 0.00 3.16
96 97 5.747197 GCAGATCTGGTAGCATGAAAAATTG 59.253 40.000 23.89 0.00 0.00 2.32
97 98 5.655532 AGCAGATCTGGTAGCATGAAAAATT 59.344 36.000 25.44 0.00 39.83 1.82
98 99 5.198965 AGCAGATCTGGTAGCATGAAAAAT 58.801 37.500 25.44 0.00 39.83 1.82
99 100 4.592942 AGCAGATCTGGTAGCATGAAAAA 58.407 39.130 25.44 0.00 39.83 1.94
100 101 4.226427 AGCAGATCTGGTAGCATGAAAA 57.774 40.909 25.44 0.00 39.83 2.29
101 102 3.920231 AGCAGATCTGGTAGCATGAAA 57.080 42.857 25.44 0.00 39.83 2.69
102 103 4.262765 CCATAGCAGATCTGGTAGCATGAA 60.263 45.833 31.64 15.41 45.25 2.57
103 104 3.260128 CCATAGCAGATCTGGTAGCATGA 59.740 47.826 31.64 16.06 45.25 3.07
104 105 3.597255 CCATAGCAGATCTGGTAGCATG 58.403 50.000 31.64 26.29 45.25 4.06
105 106 2.570752 CCCATAGCAGATCTGGTAGCAT 59.429 50.000 31.64 18.67 45.25 3.79
106 107 1.973515 CCCATAGCAGATCTGGTAGCA 59.026 52.381 31.64 17.37 45.25 3.49
107 108 1.338579 GCCCATAGCAGATCTGGTAGC 60.339 57.143 31.64 26.37 45.25 3.58
108 109 2.233431 GAGCCCATAGCAGATCTGGTAG 59.767 54.545 31.64 23.86 45.25 3.18
119 120 0.685097 TACCATTCCGAGCCCATAGC 59.315 55.000 0.00 0.00 44.25 2.97
120 121 1.691976 TGTACCATTCCGAGCCCATAG 59.308 52.381 0.00 0.00 0.00 2.23
121 122 1.796017 TGTACCATTCCGAGCCCATA 58.204 50.000 0.00 0.00 0.00 2.74
122 123 0.916086 TTGTACCATTCCGAGCCCAT 59.084 50.000 0.00 0.00 0.00 4.00
123 124 0.693622 TTTGTACCATTCCGAGCCCA 59.306 50.000 0.00 0.00 0.00 5.36
124 125 1.947456 GATTTGTACCATTCCGAGCCC 59.053 52.381 0.00 0.00 0.00 5.19
125 126 2.614057 CAGATTTGTACCATTCCGAGCC 59.386 50.000 0.00 0.00 0.00 4.70
126 127 3.531538 TCAGATTTGTACCATTCCGAGC 58.468 45.455 0.00 0.00 0.00 5.03
127 128 5.011090 TCTCAGATTTGTACCATTCCGAG 57.989 43.478 0.00 0.00 0.00 4.63
128 129 5.614324 ATCTCAGATTTGTACCATTCCGA 57.386 39.130 0.00 0.00 0.00 4.55
129 130 5.696724 GGTATCTCAGATTTGTACCATTCCG 59.303 44.000 0.00 0.00 35.88 4.30
130 131 6.591935 TGGTATCTCAGATTTGTACCATTCC 58.408 40.000 3.21 0.00 39.72 3.01
134 135 5.665360 TCCATGGTATCTCAGATTTGTACCA 59.335 40.000 12.58 9.12 46.15 3.25
135 136 6.174720 TCCATGGTATCTCAGATTTGTACC 57.825 41.667 12.58 0.00 36.26 3.34
136 137 8.682936 AAATCCATGGTATCTCAGATTTGTAC 57.317 34.615 12.58 0.00 33.81 2.90
137 138 9.123902 CAAAATCCATGGTATCTCAGATTTGTA 57.876 33.333 12.58 0.00 34.94 2.41
138 139 7.616935 ACAAAATCCATGGTATCTCAGATTTGT 59.383 33.333 12.58 12.23 34.94 2.83
139 140 7.919091 CACAAAATCCATGGTATCTCAGATTTG 59.081 37.037 12.58 11.70 34.94 2.32
140 141 7.417116 GCACAAAATCCATGGTATCTCAGATTT 60.417 37.037 12.58 4.83 35.93 2.17
141 142 6.040166 GCACAAAATCCATGGTATCTCAGATT 59.960 38.462 12.58 0.00 0.00 2.40
142 143 5.533903 GCACAAAATCCATGGTATCTCAGAT 59.466 40.000 12.58 0.00 0.00 2.90
143 144 4.883585 GCACAAAATCCATGGTATCTCAGA 59.116 41.667 12.58 0.00 0.00 3.27
144 145 4.037208 GGCACAAAATCCATGGTATCTCAG 59.963 45.833 12.58 0.00 0.00 3.35
145 146 3.953612 GGCACAAAATCCATGGTATCTCA 59.046 43.478 12.58 0.00 0.00 3.27
146 147 3.953612 TGGCACAAAATCCATGGTATCTC 59.046 43.478 12.58 0.00 31.92 2.75
147 148 3.979911 TGGCACAAAATCCATGGTATCT 58.020 40.909 12.58 0.00 31.92 1.98
164 165 6.179756 AGTTGAAACATATCAGTGTATGGCA 58.820 36.000 13.67 0.00 36.58 4.92
165 166 6.683974 AGTTGAAACATATCAGTGTATGGC 57.316 37.500 13.67 6.61 36.58 4.40
166 167 9.988350 GTTTAGTTGAAACATATCAGTGTATGG 57.012 33.333 13.67 0.00 45.82 2.74
180 181 5.591472 ACACCCAGTTAGGTTTAGTTGAAAC 59.409 40.000 0.00 0.00 45.80 2.78
181 182 5.591067 CACACCCAGTTAGGTTTAGTTGAAA 59.409 40.000 0.00 0.00 38.39 2.69
182 183 5.127491 CACACCCAGTTAGGTTTAGTTGAA 58.873 41.667 0.00 0.00 38.39 2.69
183 184 4.710324 CACACCCAGTTAGGTTTAGTTGA 58.290 43.478 0.00 0.00 38.39 3.18
184 185 3.252458 GCACACCCAGTTAGGTTTAGTTG 59.748 47.826 0.00 0.00 38.39 3.16
185 186 3.483421 GCACACCCAGTTAGGTTTAGTT 58.517 45.455 0.00 0.00 38.39 2.24
186 187 2.224695 GGCACACCCAGTTAGGTTTAGT 60.225 50.000 0.00 0.00 38.39 2.24
187 188 2.433436 GGCACACCCAGTTAGGTTTAG 58.567 52.381 0.00 0.00 38.39 1.85
188 189 2.572209 GGCACACCCAGTTAGGTTTA 57.428 50.000 0.00 0.00 38.39 2.01
189 190 3.432262 GGCACACCCAGTTAGGTTT 57.568 52.632 0.00 0.00 38.39 3.27
200 201 0.550914 TATGATGGGAAGGGCACACC 59.449 55.000 0.00 0.00 40.67 4.16
201 202 1.212935 AGTATGATGGGAAGGGCACAC 59.787 52.381 0.00 0.00 28.49 3.82
202 203 1.490490 GAGTATGATGGGAAGGGCACA 59.510 52.381 0.00 0.00 0.00 4.57
203 204 1.202818 GGAGTATGATGGGAAGGGCAC 60.203 57.143 0.00 0.00 0.00 5.01
204 205 1.140312 GGAGTATGATGGGAAGGGCA 58.860 55.000 0.00 0.00 0.00 5.36
205 206 1.349357 GAGGAGTATGATGGGAAGGGC 59.651 57.143 0.00 0.00 0.00 5.19
206 207 1.620819 CGAGGAGTATGATGGGAAGGG 59.379 57.143 0.00 0.00 0.00 3.95
207 208 2.598565 TCGAGGAGTATGATGGGAAGG 58.401 52.381 0.00 0.00 0.00 3.46
208 209 3.829026 TGATCGAGGAGTATGATGGGAAG 59.171 47.826 0.00 0.00 0.00 3.46
209 210 3.844640 TGATCGAGGAGTATGATGGGAA 58.155 45.455 0.00 0.00 0.00 3.97
210 211 3.525800 TGATCGAGGAGTATGATGGGA 57.474 47.619 0.00 0.00 0.00 4.37
211 212 3.766051 TGATGATCGAGGAGTATGATGGG 59.234 47.826 0.00 0.00 0.00 4.00
212 213 4.381398 GGTGATGATCGAGGAGTATGATGG 60.381 50.000 0.00 0.00 0.00 3.51
213 214 4.381398 GGGTGATGATCGAGGAGTATGATG 60.381 50.000 0.00 0.00 0.00 3.07
214 215 3.766591 GGGTGATGATCGAGGAGTATGAT 59.233 47.826 0.00 0.00 0.00 2.45
215 216 3.157881 GGGTGATGATCGAGGAGTATGA 58.842 50.000 0.00 0.00 0.00 2.15
216 217 2.893489 TGGGTGATGATCGAGGAGTATG 59.107 50.000 0.00 0.00 0.00 2.39
217 218 3.244887 TGGGTGATGATCGAGGAGTAT 57.755 47.619 0.00 0.00 0.00 2.12
218 219 2.748209 TGGGTGATGATCGAGGAGTA 57.252 50.000 0.00 0.00 0.00 2.59
219 220 1.866015 TTGGGTGATGATCGAGGAGT 58.134 50.000 0.00 0.00 0.00 3.85
220 221 2.555199 GTTTGGGTGATGATCGAGGAG 58.445 52.381 0.00 0.00 0.00 3.69
221 222 1.209504 GGTTTGGGTGATGATCGAGGA 59.790 52.381 0.00 0.00 0.00 3.71
222 223 1.668419 GGTTTGGGTGATGATCGAGG 58.332 55.000 0.00 0.00 0.00 4.63
223 224 1.668419 GGGTTTGGGTGATGATCGAG 58.332 55.000 0.00 0.00 0.00 4.04
224 225 0.254747 GGGGTTTGGGTGATGATCGA 59.745 55.000 0.00 0.00 0.00 3.59
225 226 0.034574 TGGGGTTTGGGTGATGATCG 60.035 55.000 0.00 0.00 0.00 3.69
226 227 1.686115 CCTGGGGTTTGGGTGATGATC 60.686 57.143 0.00 0.00 0.00 2.92
227 228 0.336048 CCTGGGGTTTGGGTGATGAT 59.664 55.000 0.00 0.00 0.00 2.45
228 229 0.774096 TCCTGGGGTTTGGGTGATGA 60.774 55.000 0.00 0.00 0.00 2.92
229 230 0.114168 TTCCTGGGGTTTGGGTGATG 59.886 55.000 0.00 0.00 0.00 3.07
230 231 0.863956 TTTCCTGGGGTTTGGGTGAT 59.136 50.000 0.00 0.00 0.00 3.06
231 232 0.863956 ATTTCCTGGGGTTTGGGTGA 59.136 50.000 0.00 0.00 0.00 4.02
232 233 1.266178 GATTTCCTGGGGTTTGGGTG 58.734 55.000 0.00 0.00 0.00 4.61
233 234 0.116342 GGATTTCCTGGGGTTTGGGT 59.884 55.000 0.00 0.00 0.00 4.51
234 235 0.116143 TGGATTTCCTGGGGTTTGGG 59.884 55.000 0.00 0.00 36.82 4.12
235 236 2.022718 TTGGATTTCCTGGGGTTTGG 57.977 50.000 0.00 0.00 36.82 3.28
236 237 2.355007 GCATTGGATTTCCTGGGGTTTG 60.355 50.000 0.00 0.00 36.82 2.93
237 238 1.908619 GCATTGGATTTCCTGGGGTTT 59.091 47.619 0.00 0.00 36.82 3.27
238 239 1.571955 GCATTGGATTTCCTGGGGTT 58.428 50.000 0.00 0.00 36.82 4.11
239 240 0.325577 GGCATTGGATTTCCTGGGGT 60.326 55.000 0.00 0.00 36.82 4.95
240 241 1.050421 GGGCATTGGATTTCCTGGGG 61.050 60.000 0.00 0.00 36.82 4.96
241 242 1.050421 GGGGCATTGGATTTCCTGGG 61.050 60.000 0.00 0.00 36.82 4.45
242 243 0.031817 AGGGGCATTGGATTTCCTGG 60.032 55.000 0.00 0.00 36.82 4.45
243 244 2.754012 TAGGGGCATTGGATTTCCTG 57.246 50.000 0.00 0.00 36.82 3.86
244 245 3.646534 CTTTAGGGGCATTGGATTTCCT 58.353 45.455 0.00 0.00 36.82 3.36
245 246 2.103094 GCTTTAGGGGCATTGGATTTCC 59.897 50.000 0.00 0.00 0.00 3.13
246 247 2.765699 TGCTTTAGGGGCATTGGATTTC 59.234 45.455 0.00 0.00 34.56 2.17
247 248 2.831565 TGCTTTAGGGGCATTGGATTT 58.168 42.857 0.00 0.00 34.56 2.17
248 249 2.548464 TGCTTTAGGGGCATTGGATT 57.452 45.000 0.00 0.00 34.56 3.01
249 250 2.091166 TCATGCTTTAGGGGCATTGGAT 60.091 45.455 0.00 0.00 46.62 3.41
250 251 1.287442 TCATGCTTTAGGGGCATTGGA 59.713 47.619 0.00 0.00 46.62 3.53
251 252 1.779221 TCATGCTTTAGGGGCATTGG 58.221 50.000 0.00 0.00 46.62 3.16
252 253 2.696707 ACATCATGCTTTAGGGGCATTG 59.303 45.455 0.00 0.00 46.62 2.82
253 254 3.036452 ACATCATGCTTTAGGGGCATT 57.964 42.857 0.00 0.00 46.62 3.56
255 256 2.101783 CAACATCATGCTTTAGGGGCA 58.898 47.619 0.00 0.00 44.05 5.36
256 257 2.102578 ACAACATCATGCTTTAGGGGC 58.897 47.619 0.00 0.00 0.00 5.80
257 258 7.581213 TTATAACAACATCATGCTTTAGGGG 57.419 36.000 0.00 0.00 0.00 4.79
258 259 9.071276 AGATTATAACAACATCATGCTTTAGGG 57.929 33.333 0.00 0.00 0.00 3.53
261 262 9.851686 AGGAGATTATAACAACATCATGCTTTA 57.148 29.630 0.00 0.00 0.00 1.85
262 263 8.757982 AGGAGATTATAACAACATCATGCTTT 57.242 30.769 0.00 0.00 0.00 3.51
263 264 9.851686 TTAGGAGATTATAACAACATCATGCTT 57.148 29.630 0.00 0.00 0.00 3.91
264 265 9.851686 TTTAGGAGATTATAACAACATCATGCT 57.148 29.630 0.00 0.00 0.00 3.79
278 279 8.907885 GCTCCAATGTTTTCTTTAGGAGATTAT 58.092 33.333 9.57 0.00 42.87 1.28
279 280 7.888021 TGCTCCAATGTTTTCTTTAGGAGATTA 59.112 33.333 9.57 0.00 42.87 1.75
280 281 6.721208 TGCTCCAATGTTTTCTTTAGGAGATT 59.279 34.615 9.57 0.00 42.87 2.40
281 282 6.151817 GTGCTCCAATGTTTTCTTTAGGAGAT 59.848 38.462 9.57 0.00 42.87 2.75
282 283 5.473504 GTGCTCCAATGTTTTCTTTAGGAGA 59.526 40.000 9.57 0.00 42.87 3.71
283 284 5.617751 CGTGCTCCAATGTTTTCTTTAGGAG 60.618 44.000 0.00 0.00 43.04 3.69
284 285 4.215399 CGTGCTCCAATGTTTTCTTTAGGA 59.785 41.667 0.00 0.00 0.00 2.94
285 286 4.215399 TCGTGCTCCAATGTTTTCTTTAGG 59.785 41.667 0.00 0.00 0.00 2.69
286 287 5.356882 TCGTGCTCCAATGTTTTCTTTAG 57.643 39.130 0.00 0.00 0.00 1.85
287 288 5.529430 TCTTCGTGCTCCAATGTTTTCTTTA 59.471 36.000 0.00 0.00 0.00 1.85
288 289 4.338118 TCTTCGTGCTCCAATGTTTTCTTT 59.662 37.500 0.00 0.00 0.00 2.52
289 290 3.882888 TCTTCGTGCTCCAATGTTTTCTT 59.117 39.130 0.00 0.00 0.00 2.52
290 291 3.476552 TCTTCGTGCTCCAATGTTTTCT 58.523 40.909 0.00 0.00 0.00 2.52
291 292 3.365364 CCTCTTCGTGCTCCAATGTTTTC 60.365 47.826 0.00 0.00 0.00 2.29
292 293 2.554032 CCTCTTCGTGCTCCAATGTTTT 59.446 45.455 0.00 0.00 0.00 2.43
293 294 2.154462 CCTCTTCGTGCTCCAATGTTT 58.846 47.619 0.00 0.00 0.00 2.83
294 295 1.813513 CCTCTTCGTGCTCCAATGTT 58.186 50.000 0.00 0.00 0.00 2.71
295 296 0.674895 GCCTCTTCGTGCTCCAATGT 60.675 55.000 0.00 0.00 0.00 2.71
296 297 0.392193 AGCCTCTTCGTGCTCCAATG 60.392 55.000 0.00 0.00 30.33 2.82
297 298 1.195115 TAGCCTCTTCGTGCTCCAAT 58.805 50.000 0.00 0.00 39.00 3.16
298 299 1.137086 GATAGCCTCTTCGTGCTCCAA 59.863 52.381 0.00 0.00 39.00 3.53
299 300 0.747255 GATAGCCTCTTCGTGCTCCA 59.253 55.000 0.00 0.00 39.00 3.86
300 301 0.747255 TGATAGCCTCTTCGTGCTCC 59.253 55.000 0.00 0.00 39.00 4.70
301 302 2.035193 TGATGATAGCCTCTTCGTGCTC 59.965 50.000 0.00 0.00 39.00 4.26
302 303 2.034878 TGATGATAGCCTCTTCGTGCT 58.965 47.619 0.00 0.00 41.57 4.40
303 304 2.515926 TGATGATAGCCTCTTCGTGC 57.484 50.000 0.00 0.00 32.09 5.34
304 305 2.799412 GCTTGATGATAGCCTCTTCGTG 59.201 50.000 0.00 0.00 32.09 4.35
305 306 2.697751 AGCTTGATGATAGCCTCTTCGT 59.302 45.455 0.00 0.00 39.47 3.85
306 307 3.316283 GAGCTTGATGATAGCCTCTTCG 58.684 50.000 0.00 0.00 39.47 3.79
307 308 3.556843 GGGAGCTTGATGATAGCCTCTTC 60.557 52.174 0.00 0.00 39.47 2.87
308 309 2.371510 GGGAGCTTGATGATAGCCTCTT 59.628 50.000 0.00 0.00 39.47 2.85
309 310 1.977129 GGGAGCTTGATGATAGCCTCT 59.023 52.381 0.00 0.00 39.47 3.69
310 311 1.977129 AGGGAGCTTGATGATAGCCTC 59.023 52.381 0.00 0.00 39.47 4.70
311 312 1.698532 CAGGGAGCTTGATGATAGCCT 59.301 52.381 0.00 0.00 39.47 4.58
312 313 1.696336 TCAGGGAGCTTGATGATAGCC 59.304 52.381 0.00 0.00 39.47 3.93
313 314 3.699411 ATCAGGGAGCTTGATGATAGC 57.301 47.619 6.69 0.00 38.93 2.97
314 315 7.040823 GGTTAAAATCAGGGAGCTTGATGATAG 60.041 40.741 0.16 0.00 35.54 2.08
315 316 6.772716 GGTTAAAATCAGGGAGCTTGATGATA 59.227 38.462 0.16 0.00 35.54 2.15
316 317 5.595952 GGTTAAAATCAGGGAGCTTGATGAT 59.404 40.000 0.16 1.96 35.54 2.45
317 318 4.949856 GGTTAAAATCAGGGAGCTTGATGA 59.050 41.667 0.16 0.00 35.54 2.92
318 319 4.706476 TGGTTAAAATCAGGGAGCTTGATG 59.294 41.667 0.16 0.00 35.54 3.07
319 320 4.934356 TGGTTAAAATCAGGGAGCTTGAT 58.066 39.130 0.00 0.00 36.87 2.57
320 321 4.380843 TGGTTAAAATCAGGGAGCTTGA 57.619 40.909 0.00 0.00 0.00 3.02
321 322 5.467035 TTTGGTTAAAATCAGGGAGCTTG 57.533 39.130 0.00 0.00 0.00 4.01
322 323 5.543790 ACATTTGGTTAAAATCAGGGAGCTT 59.456 36.000 0.00 0.00 36.28 3.74
323 324 5.086621 ACATTTGGTTAAAATCAGGGAGCT 58.913 37.500 0.00 0.00 36.28 4.09
324 325 5.405935 ACATTTGGTTAAAATCAGGGAGC 57.594 39.130 0.00 0.00 36.28 4.70
325 326 5.105351 GGGACATTTGGTTAAAATCAGGGAG 60.105 44.000 0.00 0.00 36.28 4.30
326 327 4.775253 GGGACATTTGGTTAAAATCAGGGA 59.225 41.667 0.00 0.00 36.28 4.20
327 328 4.530161 TGGGACATTTGGTTAAAATCAGGG 59.470 41.667 0.00 0.00 36.28 4.45
328 329 5.736951 TGGGACATTTGGTTAAAATCAGG 57.263 39.130 0.00 0.00 36.28 3.86
489 500 8.807667 AAACAGTCTTAAAATTGCATGAAGAG 57.192 30.769 0.00 0.00 0.00 2.85
497 508 6.927933 ATGCGTAAACAGTCTTAAAATTGC 57.072 33.333 0.00 0.00 0.00 3.56
555 566 8.234546 ACATGGACATTTTTAGAAATACGTGAC 58.765 33.333 0.00 0.00 33.78 3.67
575 586 6.204688 GTGAACACTTTGATTGACTACATGGA 59.795 38.462 0.00 0.00 0.00 3.41
619 630 7.605410 AAGCCATGAAATTTTGCTAAATCTG 57.395 32.000 6.58 3.42 32.85 2.90
670 681 8.361889 ACAAGCATTTTTAATACGTAAAACCCT 58.638 29.630 0.00 0.00 40.59 4.34
672 683 8.970293 ACACAAGCATTTTTAATACGTAAAACC 58.030 29.630 0.00 0.00 40.59 3.27
761 840 4.814294 GATCGGCCCACTTCGCGT 62.814 66.667 5.77 0.00 0.00 6.01
795 880 2.719426 AGTTCTAACGGACCGTCTTG 57.281 50.000 22.00 13.24 39.99 3.02
803 888 8.542080 TCCTAATTTGGAAATAGTTCTAACGGA 58.458 33.333 6.13 3.55 34.31 4.69
826 911 1.302285 CATGTGCTGGGCTCTTCCT 59.698 57.895 0.00 0.00 34.39 3.36
863 948 1.919240 GGTTTTCCCCACTGGTTAGG 58.081 55.000 0.00 0.00 34.77 2.69
890 975 4.642466 TTTTTCCCCACTGGTTGTTTTT 57.358 36.364 0.00 0.00 34.77 1.94
891 976 4.384757 GGATTTTTCCCCACTGGTTGTTTT 60.385 41.667 0.00 0.00 34.77 2.43
892 977 3.135712 GGATTTTTCCCCACTGGTTGTTT 59.864 43.478 0.00 0.00 34.77 2.83
895 980 2.608623 AGGATTTTTCCCCACTGGTTG 58.391 47.619 0.00 0.00 34.77 3.77
898 983 5.816955 TTTTTAGGATTTTTCCCCACTGG 57.183 39.130 0.00 0.00 0.00 4.00
924 1011 4.658901 TCCTCTTTGAACTTTCCCTACTGT 59.341 41.667 0.00 0.00 0.00 3.55
925 1012 5.221742 ACTCCTCTTTGAACTTTCCCTACTG 60.222 44.000 0.00 0.00 0.00 2.74
926 1013 4.908481 ACTCCTCTTTGAACTTTCCCTACT 59.092 41.667 0.00 0.00 0.00 2.57
927 1014 5.230323 ACTCCTCTTTGAACTTTCCCTAC 57.770 43.478 0.00 0.00 0.00 3.18
928 1015 6.082707 ACTACTCCTCTTTGAACTTTCCCTA 58.917 40.000 0.00 0.00 0.00 3.53
929 1016 4.908481 ACTACTCCTCTTTGAACTTTCCCT 59.092 41.667 0.00 0.00 0.00 4.20
932 1019 4.386350 GCGACTACTCCTCTTTGAACTTTC 59.614 45.833 0.00 0.00 0.00 2.62
935 1023 3.158676 AGCGACTACTCCTCTTTGAACT 58.841 45.455 0.00 0.00 0.00 3.01
1459 1547 4.651778 TGAAAGTGAAGACGGGAATTGAT 58.348 39.130 0.00 0.00 0.00 2.57
1583 1671 1.493311 CAAGCTCGCCGTTTCAGTC 59.507 57.895 0.00 0.00 0.00 3.51
1706 1794 7.285629 ACATTACGAGGAACATCAAGATCTAGA 59.714 37.037 0.00 0.00 0.00 2.43
1723 1811 4.016113 TCAGTGATGACGACATTACGAG 57.984 45.455 14.85 12.28 44.27 4.18
1725 1813 4.016113 TCTCAGTGATGACGACATTACG 57.984 45.455 14.85 10.94 44.27 3.18
1742 1830 1.527034 GCTCAGGTTGCAACATCTCA 58.473 50.000 29.55 9.13 0.00 3.27
1890 1978 0.040958 GCAAATGGAATAGAGCGCGG 60.041 55.000 8.83 0.00 0.00 6.46
1894 1982 6.759827 ACATCAAAATGCAAATGGAATAGAGC 59.240 34.615 0.00 0.00 36.26 4.09
1904 1992 7.517101 CGAGTTGACAAACATCAAAATGCAAAT 60.517 33.333 0.00 0.00 40.22 2.32
1939 2027 5.804639 TGCCTGATAGAAAACTAAAGCTCA 58.195 37.500 0.00 0.00 0.00 4.26
2024 2112 3.334583 TGTGATCTGAAGTTGCCCTAC 57.665 47.619 0.00 0.00 0.00 3.18
2099 2187 2.172505 TGTCAAGAAGGCAGAGAAACCA 59.827 45.455 0.00 0.00 0.00 3.67
2208 2296 8.752005 ACATACCATGTTCAGTATTAAGCAAT 57.248 30.769 0.00 0.00 41.63 3.56
2316 2404 5.560724 TGTTAAAAGGGTGATCTCCTTCTG 58.439 41.667 17.23 0.00 43.24 3.02
2652 2740 8.416329 GCATGGGAAAGATAAATCTAACACAAT 58.584 33.333 0.00 0.00 35.76 2.71
2750 2841 6.896307 ACTTCTATACCCTACACAAACTAGCT 59.104 38.462 0.00 0.00 0.00 3.32
2766 2857 4.444720 GGCATGCGTCAACTACTTCTATAC 59.555 45.833 12.44 0.00 0.00 1.47
2801 2895 7.202289 GGGGAAATAGGGGAATTTCAGTATAGT 60.202 40.741 10.50 0.00 44.28 2.12
3100 3195 9.084533 TGCATATCCTACATACTACATACACAA 57.915 33.333 0.00 0.00 0.00 3.33
3233 3344 8.828644 CAGATTACTTCAGATCAAAAGAGATGG 58.171 37.037 12.51 0.00 0.00 3.51
3251 3362 3.190118 GCAAGCAAACAGAGCAGATTACT 59.810 43.478 0.00 0.00 0.00 2.24
3268 3381 3.555966 ACCCTCCAATAATACTGCAAGC 58.444 45.455 0.00 0.00 37.60 4.01
3327 3440 3.736252 CAGTCAACTTTTCTCGATGTCGT 59.264 43.478 2.04 0.00 40.80 4.34
3332 3445 2.808543 GTGGCAGTCAACTTTTCTCGAT 59.191 45.455 0.00 0.00 0.00 3.59
3334 3447 2.032549 CAGTGGCAGTCAACTTTTCTCG 60.033 50.000 0.00 0.00 0.00 4.04
3380 3493 2.393768 GCACTGTCACATGGCTCCG 61.394 63.158 0.00 0.00 0.00 4.63
3390 3503 3.758755 ATGACTTGAGAAGCACTGTCA 57.241 42.857 0.00 0.00 41.38 3.58
3394 3507 4.583871 CCCTTTATGACTTGAGAAGCACT 58.416 43.478 0.00 0.00 0.00 4.40
3453 3566 3.281240 GGCACATTCCACAGCCTG 58.719 61.111 0.00 0.00 43.70 4.85
3507 3620 6.401537 AGGAGATAGTGAGATACCTAGCAT 57.598 41.667 0.00 0.00 0.00 3.79
3515 3628 9.868160 TTACTCATCAAAGGAGATAGTGAGATA 57.132 33.333 6.49 0.00 36.26 1.98
3516 3629 8.774546 TTACTCATCAAAGGAGATAGTGAGAT 57.225 34.615 6.49 0.00 36.26 2.75
3517 3630 8.595362 TTTACTCATCAAAGGAGATAGTGAGA 57.405 34.615 6.49 0.00 36.26 3.27
3518 3631 9.658799 TTTTTACTCATCAAAGGAGATAGTGAG 57.341 33.333 0.00 0.00 36.26 3.51
3549 3662 6.899089 TCTCTTCCCAACATCTAATGCATTA 58.101 36.000 17.94 17.94 0.00 1.90
3565 3678 0.322975 TCTGCAGCACTTCTCTTCCC 59.677 55.000 9.47 0.00 0.00 3.97
3593 3706 5.815222 CCAACATCATTACCAATCGTCAGTA 59.185 40.000 0.00 0.00 0.00 2.74
3599 3712 4.572985 ATGCCAACATCATTACCAATCG 57.427 40.909 0.00 0.00 0.00 3.34
3628 3741 4.194640 TGAGAGTATGATTTTCTGCAGCC 58.805 43.478 9.47 0.00 0.00 4.85
3629 3742 5.006552 GTCTGAGAGTATGATTTTCTGCAGC 59.993 44.000 9.47 0.00 0.00 5.25
3651 3764 3.070302 CCTAACTGCTCCTATGGAAGGTC 59.930 52.174 0.00 0.00 46.62 3.85
3683 3796 1.542915 TGAGCATGGCTTCTCTTTTGC 59.457 47.619 0.00 0.00 39.88 3.68
3700 3813 7.194607 TGTTAGTCTGAAAAAGCAGAATGAG 57.805 36.000 0.00 0.00 45.69 2.90
3705 3818 6.942532 ATGTTGTTAGTCTGAAAAAGCAGA 57.057 33.333 0.00 0.00 42.31 4.26
3709 3822 7.930217 TCCTCAATGTTGTTAGTCTGAAAAAG 58.070 34.615 0.00 0.00 0.00 2.27
3714 3827 4.937620 GCATCCTCAATGTTGTTAGTCTGA 59.062 41.667 0.00 0.00 37.71 3.27
3715 3828 4.940046 AGCATCCTCAATGTTGTTAGTCTG 59.060 41.667 0.00 0.00 37.71 3.51
3741 3856 9.241317 CTTGCATTTGGTAATAGAATCATCAAC 57.759 33.333 0.00 0.00 0.00 3.18
3755 3873 2.224892 TGGTGCTACCTTGCATTTGGTA 60.225 45.455 11.57 11.57 45.23 3.25
3773 3891 3.811083 TGTATTTCACAAAGTCGGTGGT 58.189 40.909 0.00 0.00 36.90 4.16
3792 3910 9.871238 GATTTCACGGGATATACATACTATTGT 57.129 33.333 0.00 0.00 0.00 2.71
3854 3972 4.258702 AGTTCTACACACATGACCTCAC 57.741 45.455 0.00 0.00 0.00 3.51
3871 3989 9.871299 GAGAGTAAAACATTTCTCTCAAAGTTC 57.129 33.333 15.83 1.62 46.78 3.01
3892 4010 8.643324 ACAAGAACTTAACAGATGTAAGAGAGT 58.357 33.333 0.00 0.00 0.00 3.24
3900 4018 8.993121 CATGAACTACAAGAACTTAACAGATGT 58.007 33.333 0.00 0.00 0.00 3.06
3901 4019 7.959651 GCATGAACTACAAGAACTTAACAGATG 59.040 37.037 0.00 0.00 0.00 2.90
3902 4020 7.119846 GGCATGAACTACAAGAACTTAACAGAT 59.880 37.037 0.00 0.00 0.00 2.90
3903 4021 6.426937 GGCATGAACTACAAGAACTTAACAGA 59.573 38.462 0.00 0.00 0.00 3.41
3908 4026 6.296026 ACAAGGCATGAACTACAAGAACTTA 58.704 36.000 0.00 0.00 0.00 2.24
3926 4044 5.888105 TCGAGTAGTAGTATGAAACAAGGC 58.112 41.667 0.00 0.00 0.00 4.35
3936 4054 8.624367 ATTGCTAACTCATCGAGTAGTAGTAT 57.376 34.615 3.12 0.00 42.59 2.12
4136 4260 7.321153 GCCACGATGTATAATAGTAGACCAAT 58.679 38.462 0.00 0.00 0.00 3.16
4188 4312 0.741574 TTCAGACACGCCAACACGTT 60.742 50.000 0.00 0.00 45.75 3.99
4246 4370 0.968901 TCCACGGCCTATTCGTCACT 60.969 55.000 0.00 0.00 38.94 3.41
4255 4379 2.362760 TACGGCTTCCACGGCCTA 60.363 61.111 0.00 0.00 46.73 3.93
4423 4547 0.036306 AGCCGTTTTTCGTCCCTGAT 59.964 50.000 0.00 0.00 37.94 2.90
4426 4550 1.302271 GGAGCCGTTTTTCGTCCCT 60.302 57.895 0.00 0.00 37.94 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.