Multiple sequence alignment - TraesCS6B01G297500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G297500 chr6B 100.000 2483 0 0 1 2483 534097422 534094940 0.000000e+00 4586.0
1 TraesCS6B01G297500 chr6B 100.000 30 0 0 2113 2142 534095342 534095313 3.450000e-04 56.5
2 TraesCS6B01G297500 chr6D 93.469 1669 60 22 208 1853 346952817 346954459 0.000000e+00 2433.0
3 TraesCS6B01G297500 chr6D 92.347 196 5 6 2296 2481 346954476 346954671 1.130000e-68 270.0
4 TraesCS6B01G297500 chr6D 86.517 178 22 2 2112 2287 88874164 88873987 7.010000e-46 195.0
5 TraesCS6B01G297500 chr6A 90.476 1680 84 37 208 1853 496476576 496474939 0.000000e+00 2146.0
6 TraesCS6B01G297500 chr6A 92.661 109 3 1 2380 2483 496474782 496474674 4.280000e-33 152.0
7 TraesCS6B01G297500 chr6A 95.556 90 1 2 2295 2383 496474923 496474836 9.260000e-30 141.0
8 TraesCS6B01G297500 chr6A 88.136 59 6 1 2227 2284 617391850 617391908 4.430000e-08 69.4
9 TraesCS6B01G297500 chr5D 90.871 241 17 4 1868 2105 482904659 482904897 3.990000e-83 318.0
10 TraesCS6B01G297500 chr5D 88.525 244 23 4 1868 2107 288543771 288544013 8.690000e-75 291.0
11 TraesCS6B01G297500 chr2A 90.283 247 19 5 1867 2110 15029199 15028955 3.990000e-83 318.0
12 TraesCS6B01G297500 chr2A 77.717 184 17 15 1855 2031 163529886 163529720 9.460000e-15 91.6
13 TraesCS6B01G297500 chr1D 90.213 235 18 5 1869 2099 302913980 302913747 4.010000e-78 302.0
14 TraesCS6B01G297500 chr1D 88.382 241 23 5 1868 2105 414129812 414129574 4.040000e-73 285.0
15 TraesCS6B01G297500 chr5A 88.889 243 24 3 1867 2107 382066474 382066715 1.870000e-76 296.0
16 TraesCS6B01G297500 chr5A 89.831 59 5 1 2227 2284 545044006 545043948 9.520000e-10 75.0
17 TraesCS6B01G297500 chr2B 88.889 243 22 5 1868 2107 670342836 670343076 6.720000e-76 294.0
18 TraesCS6B01G297500 chr2B 83.206 131 15 7 2148 2274 799362993 799363120 2.020000e-21 113.0
19 TraesCS6B01G297500 chr2B 97.297 37 1 0 157 193 53668752 53668788 2.060000e-06 63.9
20 TraesCS6B01G297500 chr3D 88.382 241 24 3 1870 2107 25757115 25757354 1.120000e-73 287.0
21 TraesCS6B01G297500 chr4D 87.705 244 26 4 1867 2107 500846546 500846788 5.230000e-72 281.0
22 TraesCS6B01G297500 chr1B 88.268 179 14 4 2112 2284 409830253 409830430 9.000000e-50 207.0
23 TraesCS6B01G297500 chr5B 94.286 70 3 1 2215 2283 294281888 294281957 3.380000e-19 106.0
24 TraesCS6B01G297500 chr1A 93.220 59 3 1 2227 2284 566949278 566949336 4.400000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G297500 chr6B 534094940 534097422 2482 True 2321.25 4586 100.000000 1 2483 2 chr6B.!!$R1 2482
1 TraesCS6B01G297500 chr6D 346952817 346954671 1854 False 1351.50 2433 92.908000 208 2481 2 chr6D.!!$F1 2273
2 TraesCS6B01G297500 chr6A 496474674 496476576 1902 True 813.00 2146 92.897667 208 2483 3 chr6A.!!$R1 2275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.179092 GCCTGGAATTTGCATCCTGC 60.179 55.0 6.4 5.5 45.29 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1738 0.179032 TCCAGAAAAAGGCACGCAGA 60.179 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.323553 GAAACCGTAGATATGCCAGACT 57.676 45.455 0.00 0.00 0.00 3.24
22 23 4.299978 GAAACCGTAGATATGCCAGACTC 58.700 47.826 0.00 0.00 0.00 3.36
23 24 1.880675 ACCGTAGATATGCCAGACTCG 59.119 52.381 0.00 0.00 0.00 4.18
24 25 1.200252 CCGTAGATATGCCAGACTCGG 59.800 57.143 0.00 0.00 0.00 4.63
34 35 3.558674 CAGACTCGGCCTGGAATTT 57.441 52.632 0.00 0.00 0.00 1.82
35 36 1.089920 CAGACTCGGCCTGGAATTTG 58.910 55.000 0.00 0.00 0.00 2.32
36 37 0.678048 AGACTCGGCCTGGAATTTGC 60.678 55.000 0.00 0.00 0.00 3.68
37 38 0.960364 GACTCGGCCTGGAATTTGCA 60.960 55.000 0.00 0.00 0.00 4.08
38 39 0.323725 ACTCGGCCTGGAATTTGCAT 60.324 50.000 0.00 0.00 0.00 3.96
39 40 0.383231 CTCGGCCTGGAATTTGCATC 59.617 55.000 0.00 0.00 0.00 3.91
40 41 1.037030 TCGGCCTGGAATTTGCATCC 61.037 55.000 0.00 0.00 37.48 3.51
41 42 1.039233 CGGCCTGGAATTTGCATCCT 61.039 55.000 0.00 0.00 37.85 3.24
42 43 0.462789 GGCCTGGAATTTGCATCCTG 59.537 55.000 6.40 5.69 37.85 3.86
43 44 0.179092 GCCTGGAATTTGCATCCTGC 60.179 55.000 6.40 5.50 45.29 4.85
109 110 1.792006 CCGAATATACCGGCTGTTCC 58.208 55.000 0.00 0.00 40.54 3.62
124 125 2.841215 TGTTCCGGACAGAAAATTCGT 58.159 42.857 1.83 0.00 33.40 3.85
125 126 3.207778 TGTTCCGGACAGAAAATTCGTT 58.792 40.909 1.83 0.00 33.40 3.85
126 127 3.249080 TGTTCCGGACAGAAAATTCGTTC 59.751 43.478 1.83 0.00 33.40 3.95
127 128 2.419667 TCCGGACAGAAAATTCGTTCC 58.580 47.619 0.00 6.19 32.67 3.62
128 129 1.467342 CCGGACAGAAAATTCGTTCCC 59.533 52.381 0.00 0.00 32.48 3.97
129 130 1.127951 CGGACAGAAAATTCGTTCCCG 59.872 52.381 9.27 0.00 32.48 5.14
130 131 2.148768 GGACAGAAAATTCGTTCCCGT 58.851 47.619 5.30 0.00 35.01 5.28
131 132 2.159037 GGACAGAAAATTCGTTCCCGTC 59.841 50.000 5.30 0.00 33.08 4.79
132 133 2.148768 ACAGAAAATTCGTTCCCGTCC 58.851 47.619 0.00 0.00 35.01 4.79
133 134 1.127951 CAGAAAATTCGTTCCCGTCCG 59.872 52.381 0.00 0.00 35.01 4.79
134 135 0.179207 GAAAATTCGTTCCCGTCCGC 60.179 55.000 0.00 0.00 35.01 5.54
135 136 0.604511 AAAATTCGTTCCCGTCCGCT 60.605 50.000 0.00 0.00 35.01 5.52
136 137 0.247185 AAATTCGTTCCCGTCCGCTA 59.753 50.000 0.00 0.00 35.01 4.26
137 138 0.462789 AATTCGTTCCCGTCCGCTAT 59.537 50.000 0.00 0.00 35.01 2.97
138 139 1.321474 ATTCGTTCCCGTCCGCTATA 58.679 50.000 0.00 0.00 35.01 1.31
139 140 1.321474 TTCGTTCCCGTCCGCTATAT 58.679 50.000 0.00 0.00 35.01 0.86
140 141 0.594602 TCGTTCCCGTCCGCTATATG 59.405 55.000 0.00 0.00 35.01 1.78
141 142 0.594602 CGTTCCCGTCCGCTATATGA 59.405 55.000 0.00 0.00 0.00 2.15
142 143 1.001048 CGTTCCCGTCCGCTATATGAA 60.001 52.381 0.00 0.00 0.00 2.57
143 144 2.401351 GTTCCCGTCCGCTATATGAAC 58.599 52.381 0.00 0.00 0.00 3.18
144 145 0.594602 TCCCGTCCGCTATATGAACG 59.405 55.000 0.00 0.00 0.00 3.95
145 146 0.594602 CCCGTCCGCTATATGAACGA 59.405 55.000 0.00 0.00 0.00 3.85
146 147 1.201647 CCCGTCCGCTATATGAACGAT 59.798 52.381 0.00 0.00 0.00 3.73
147 148 2.352421 CCCGTCCGCTATATGAACGATT 60.352 50.000 0.00 0.00 0.00 3.34
148 149 3.119743 CCCGTCCGCTATATGAACGATTA 60.120 47.826 0.00 0.00 0.00 1.75
149 150 4.439700 CCCGTCCGCTATATGAACGATTAT 60.440 45.833 0.00 0.00 0.00 1.28
150 151 5.100259 CCGTCCGCTATATGAACGATTATT 58.900 41.667 0.00 0.00 0.00 1.40
151 152 6.260377 CCGTCCGCTATATGAACGATTATTA 58.740 40.000 0.00 0.00 0.00 0.98
152 153 6.195983 CCGTCCGCTATATGAACGATTATTAC 59.804 42.308 0.00 0.00 0.00 1.89
153 154 6.076247 CGTCCGCTATATGAACGATTATTACG 60.076 42.308 0.00 0.00 0.00 3.18
154 155 6.195983 GTCCGCTATATGAACGATTATTACGG 59.804 42.308 0.00 0.00 35.85 4.02
155 156 5.051907 CCGCTATATGAACGATTATTACGGC 60.052 44.000 0.00 0.00 34.93 5.68
156 157 5.742453 CGCTATATGAACGATTATTACGGCT 59.258 40.000 0.00 0.00 34.93 5.52
157 158 6.291112 CGCTATATGAACGATTATTACGGCTG 60.291 42.308 0.00 0.00 34.93 4.85
158 159 6.750501 GCTATATGAACGATTATTACGGCTGA 59.249 38.462 0.00 0.00 34.93 4.26
159 160 6.946229 ATATGAACGATTATTACGGCTGAC 57.054 37.500 0.00 0.00 34.93 3.51
160 161 3.450578 TGAACGATTATTACGGCTGACC 58.549 45.455 0.00 0.00 34.93 4.02
161 162 3.119065 TGAACGATTATTACGGCTGACCA 60.119 43.478 0.00 0.00 34.57 4.02
162 163 2.817901 ACGATTATTACGGCTGACCAC 58.182 47.619 0.00 0.00 34.57 4.16
163 164 2.166870 ACGATTATTACGGCTGACCACA 59.833 45.455 0.00 0.00 34.57 4.17
164 165 3.181469 ACGATTATTACGGCTGACCACAT 60.181 43.478 0.00 0.00 34.57 3.21
165 166 3.184379 CGATTATTACGGCTGACCACATG 59.816 47.826 0.00 0.00 34.57 3.21
166 167 3.620427 TTATTACGGCTGACCACATGT 57.380 42.857 0.00 0.00 34.57 3.21
167 168 2.024176 ATTACGGCTGACCACATGTC 57.976 50.000 0.00 0.00 44.72 3.06
184 185 7.356641 CACATGTCATATGTGGTAAGCTATC 57.643 40.000 6.63 0.00 44.04 2.08
185 186 6.369890 CACATGTCATATGTGGTAAGCTATCC 59.630 42.308 6.63 0.00 44.04 2.59
186 187 6.043127 ACATGTCATATGTGGTAAGCTATCCA 59.957 38.462 1.90 5.79 0.00 3.41
187 188 6.493189 TGTCATATGTGGTAAGCTATCCAA 57.507 37.500 10.73 3.80 35.38 3.53
188 189 6.894682 TGTCATATGTGGTAAGCTATCCAAA 58.105 36.000 10.73 6.86 35.38 3.28
189 190 7.342581 TGTCATATGTGGTAAGCTATCCAAAA 58.657 34.615 10.73 4.37 35.38 2.44
190 191 7.831690 TGTCATATGTGGTAAGCTATCCAAAAA 59.168 33.333 10.73 2.28 35.38 1.94
251 252 7.770897 GGGTTGTTTTACATGATCTGATAGAGT 59.229 37.037 0.00 0.00 0.00 3.24
292 295 2.756840 CTGAACAGGAGATCAGCACA 57.243 50.000 0.00 0.00 37.76 4.57
297 300 1.344438 ACAGGAGATCAGCACACGAAA 59.656 47.619 0.00 0.00 0.00 3.46
305 308 2.571212 TCAGCACACGAAAGAAACCAT 58.429 42.857 0.00 0.00 0.00 3.55
380 383 3.123804 GCCGATACAGAACGTGATTGAT 58.876 45.455 0.00 0.00 0.00 2.57
410 417 5.234116 ACGGCAGAAAATCAATCAAACAAAC 59.766 36.000 0.00 0.00 0.00 2.93
411 418 5.233902 CGGCAGAAAATCAATCAAACAAACA 59.766 36.000 0.00 0.00 0.00 2.83
412 419 6.238049 CGGCAGAAAATCAATCAAACAAACAA 60.238 34.615 0.00 0.00 0.00 2.83
413 420 7.470900 GGCAGAAAATCAATCAAACAAACAAA 58.529 30.769 0.00 0.00 0.00 2.83
414 421 7.429051 GGCAGAAAATCAATCAAACAAACAAAC 59.571 33.333 0.00 0.00 0.00 2.93
415 422 7.961827 GCAGAAAATCAATCAAACAAACAAACA 59.038 29.630 0.00 0.00 0.00 2.83
416 423 9.823098 CAGAAAATCAATCAAACAAACAAACAA 57.177 25.926 0.00 0.00 0.00 2.83
422 429 8.195617 TCAATCAAACAAACAAACAAATCCTC 57.804 30.769 0.00 0.00 0.00 3.71
424 431 6.959671 TCAAACAAACAAACAAATCCTCAC 57.040 33.333 0.00 0.00 0.00 3.51
455 462 3.007831 TGGCAACATCAGAGTGTATGTCA 59.992 43.478 0.00 0.00 46.17 3.58
485 492 2.876645 CGACCGCGAGCAAGTCTC 60.877 66.667 8.23 0.00 40.82 3.36
645 656 2.496817 CCTGCAGAGGTACGAGGC 59.503 66.667 17.39 0.00 34.16 4.70
646 657 2.103143 CTGCAGAGGTACGAGGCG 59.897 66.667 8.42 0.00 0.00 5.52
647 658 3.417275 CTGCAGAGGTACGAGGCGG 62.417 68.421 8.42 0.00 0.00 6.13
648 659 4.874977 GCAGAGGTACGAGGCGGC 62.875 72.222 0.00 0.00 0.00 6.53
649 660 4.554363 CAGAGGTACGAGGCGGCG 62.554 72.222 0.51 0.51 37.29 6.46
683 694 2.433145 CAGAGCATGACGTGGCGT 60.433 61.111 0.00 0.00 45.10 5.68
754 766 1.364901 GGTGTGAACCGACGAGGAA 59.635 57.895 8.56 0.00 45.00 3.36
785 797 2.603892 CGTCGGAAAAGAGAACACGAGA 60.604 50.000 0.00 0.00 0.00 4.04
895 907 1.988834 GCACCCTTTATCAACCCGCG 61.989 60.000 0.00 0.00 0.00 6.46
925 938 4.720902 CCCATGGTGAGCGTGGCA 62.721 66.667 17.11 0.00 0.00 4.92
1032 1052 4.186136 TTCGGGTCTGACGAAGGT 57.814 55.556 1.07 0.00 44.41 3.50
1487 1519 1.739371 GCGCGATGACTTTTAGGGAGT 60.739 52.381 12.10 0.00 0.00 3.85
1558 1592 3.318313 ACTGGTAGCATAGGTTATGGCT 58.682 45.455 0.00 0.00 36.68 4.75
1565 1599 2.811873 GCATAGGTTATGGCTCTGTGGG 60.812 54.545 0.00 0.00 36.68 4.61
1594 1628 8.470002 AGTAGAAATTCTTTGTTTGCTTTGTCT 58.530 29.630 0.00 0.00 0.00 3.41
1699 1738 1.407979 GCTAAGATGCTGCCAAATGCT 59.592 47.619 0.00 0.00 42.00 3.79
1853 1900 2.507484 TGGCAAATGAGAACAGGTGAG 58.493 47.619 0.00 0.00 0.00 3.51
1855 1902 2.485814 GGCAAATGAGAACAGGTGAGTC 59.514 50.000 0.00 0.00 0.00 3.36
1857 1904 3.755378 GCAAATGAGAACAGGTGAGTCAT 59.245 43.478 0.00 0.00 0.00 3.06
1858 1905 4.937620 GCAAATGAGAACAGGTGAGTCATA 59.062 41.667 0.00 0.00 0.00 2.15
1859 1906 5.587844 GCAAATGAGAACAGGTGAGTCATAT 59.412 40.000 0.00 0.00 0.00 1.78
1860 1907 6.457934 GCAAATGAGAACAGGTGAGTCATATG 60.458 42.308 0.00 0.00 0.00 1.78
1861 1908 5.946942 ATGAGAACAGGTGAGTCATATGT 57.053 39.130 1.90 1.46 0.00 2.29
1862 1909 5.745312 TGAGAACAGGTGAGTCATATGTT 57.255 39.130 19.92 19.92 36.83 2.71
1863 1910 5.482006 TGAGAACAGGTGAGTCATATGTTG 58.518 41.667 23.09 9.57 34.41 3.33
1864 1911 5.012046 TGAGAACAGGTGAGTCATATGTTGT 59.988 40.000 23.09 20.27 34.41 3.32
1865 1912 5.869579 AGAACAGGTGAGTCATATGTTGTT 58.130 37.500 23.09 16.00 34.41 2.83
1866 1913 5.702670 AGAACAGGTGAGTCATATGTTGTTG 59.297 40.000 23.09 6.26 34.41 3.33
1867 1914 4.326826 ACAGGTGAGTCATATGTTGTTGG 58.673 43.478 1.90 0.00 0.00 3.77
1868 1915 4.041567 ACAGGTGAGTCATATGTTGTTGGA 59.958 41.667 1.90 0.00 0.00 3.53
1869 1916 5.003160 CAGGTGAGTCATATGTTGTTGGAA 58.997 41.667 1.90 0.00 0.00 3.53
1870 1917 5.473162 CAGGTGAGTCATATGTTGTTGGAAA 59.527 40.000 1.90 0.00 0.00 3.13
1871 1918 6.151648 CAGGTGAGTCATATGTTGTTGGAAAT 59.848 38.462 1.90 0.00 0.00 2.17
1872 1919 6.721208 AGGTGAGTCATATGTTGTTGGAAATT 59.279 34.615 1.90 0.00 0.00 1.82
1873 1920 7.029563 GGTGAGTCATATGTTGTTGGAAATTC 58.970 38.462 1.90 0.00 0.00 2.17
1874 1921 7.309133 GGTGAGTCATATGTTGTTGGAAATTCA 60.309 37.037 1.90 0.00 0.00 2.57
1875 1922 7.538678 GTGAGTCATATGTTGTTGGAAATTCAC 59.461 37.037 1.90 0.00 0.00 3.18
1876 1923 7.448161 TGAGTCATATGTTGTTGGAAATTCACT 59.552 33.333 1.90 0.00 0.00 3.41
1877 1924 8.181904 AGTCATATGTTGTTGGAAATTCACTT 57.818 30.769 1.90 0.00 0.00 3.16
1878 1925 8.641541 AGTCATATGTTGTTGGAAATTCACTTT 58.358 29.630 1.90 0.00 0.00 2.66
1879 1926 8.702438 GTCATATGTTGTTGGAAATTCACTTTG 58.298 33.333 1.90 0.00 0.00 2.77
1880 1927 8.637099 TCATATGTTGTTGGAAATTCACTTTGA 58.363 29.630 1.90 0.00 0.00 2.69
1881 1928 8.702438 CATATGTTGTTGGAAATTCACTTTGAC 58.298 33.333 0.00 0.00 0.00 3.18
1882 1929 6.279513 TGTTGTTGGAAATTCACTTTGACT 57.720 33.333 0.00 0.00 0.00 3.41
1883 1930 6.329496 TGTTGTTGGAAATTCACTTTGACTC 58.671 36.000 0.00 0.00 0.00 3.36
1884 1931 6.071672 TGTTGTTGGAAATTCACTTTGACTCA 60.072 34.615 0.00 0.00 0.00 3.41
1885 1932 6.713762 TGTTGGAAATTCACTTTGACTCAT 57.286 33.333 0.00 0.00 0.00 2.90
1886 1933 7.815840 TGTTGGAAATTCACTTTGACTCATA 57.184 32.000 0.00 0.00 0.00 2.15
1887 1934 7.874940 TGTTGGAAATTCACTTTGACTCATAG 58.125 34.615 0.00 0.00 0.00 2.23
1888 1935 7.040478 TGTTGGAAATTCACTTTGACTCATAGG 60.040 37.037 0.00 0.00 0.00 2.57
1889 1936 6.542821 TGGAAATTCACTTTGACTCATAGGT 58.457 36.000 0.00 0.00 0.00 3.08
1890 1937 6.430925 TGGAAATTCACTTTGACTCATAGGTG 59.569 38.462 0.00 2.12 0.00 4.00
1891 1938 6.431234 GGAAATTCACTTTGACTCATAGGTGT 59.569 38.462 0.00 0.00 0.00 4.16
1892 1939 7.606456 GGAAATTCACTTTGACTCATAGGTGTA 59.394 37.037 0.00 0.00 0.00 2.90
1893 1940 9.167311 GAAATTCACTTTGACTCATAGGTGTAT 57.833 33.333 2.09 0.00 0.00 2.29
1896 1943 9.770097 ATTCACTTTGACTCATAGGTGTATATG 57.230 33.333 2.09 0.00 34.96 1.78
1897 1944 7.210174 TCACTTTGACTCATAGGTGTATATGC 58.790 38.462 2.09 0.00 33.88 3.14
1898 1945 6.986231 CACTTTGACTCATAGGTGTATATGCA 59.014 38.462 0.00 0.00 33.88 3.96
1899 1946 6.986817 ACTTTGACTCATAGGTGTATATGCAC 59.013 38.462 14.90 14.90 38.56 4.57
1911 1958 6.935741 GTGTATATGCACCCATTGTCTAAA 57.064 37.500 12.50 0.00 33.53 1.85
1912 1959 7.510549 GTGTATATGCACCCATTGTCTAAAT 57.489 36.000 12.50 0.00 33.53 1.40
1913 1960 8.615878 GTGTATATGCACCCATTGTCTAAATA 57.384 34.615 12.50 0.00 33.53 1.40
1914 1961 8.504005 GTGTATATGCACCCATTGTCTAAATAC 58.496 37.037 12.50 0.00 33.53 1.89
1915 1962 8.214364 TGTATATGCACCCATTGTCTAAATACA 58.786 33.333 0.00 0.00 32.85 2.29
1916 1963 5.835113 ATGCACCCATTGTCTAAATACAC 57.165 39.130 0.00 0.00 0.00 2.90
1917 1964 4.657013 TGCACCCATTGTCTAAATACACA 58.343 39.130 0.00 0.00 0.00 3.72
1918 1965 5.260424 TGCACCCATTGTCTAAATACACAT 58.740 37.500 0.00 0.00 0.00 3.21
1919 1966 5.714333 TGCACCCATTGTCTAAATACACATT 59.286 36.000 0.00 0.00 0.00 2.71
1920 1967 6.210385 TGCACCCATTGTCTAAATACACATTT 59.790 34.615 0.00 0.00 38.02 2.32
1921 1968 7.096551 GCACCCATTGTCTAAATACACATTTT 58.903 34.615 0.00 0.00 35.88 1.82
1922 1969 8.247562 GCACCCATTGTCTAAATACACATTTTA 58.752 33.333 0.00 0.00 35.88 1.52
1965 2012 5.337578 AAAAATCCCACATGTAAATCCGG 57.662 39.130 0.00 0.00 0.00 5.14
1966 2013 3.943671 AATCCCACATGTAAATCCGGA 57.056 42.857 6.61 6.61 0.00 5.14
1967 2014 2.702592 TCCCACATGTAAATCCGGAC 57.297 50.000 6.12 0.00 0.00 4.79
1968 2015 1.909986 TCCCACATGTAAATCCGGACA 59.090 47.619 6.12 0.00 0.00 4.02
1969 2016 2.507886 TCCCACATGTAAATCCGGACAT 59.492 45.455 6.12 2.84 36.73 3.06
1970 2017 3.053991 TCCCACATGTAAATCCGGACATT 60.054 43.478 6.12 8.07 34.01 2.71
1971 2018 4.164413 TCCCACATGTAAATCCGGACATTA 59.836 41.667 6.12 6.90 34.01 1.90
1972 2019 5.070001 CCCACATGTAAATCCGGACATTAT 58.930 41.667 6.12 0.00 34.01 1.28
1973 2020 6.043358 TCCCACATGTAAATCCGGACATTATA 59.957 38.462 6.12 8.55 34.01 0.98
1974 2021 6.148811 CCCACATGTAAATCCGGACATTATAC 59.851 42.308 6.12 6.65 34.01 1.47
1975 2022 6.128661 CCACATGTAAATCCGGACATTATACG 60.129 42.308 6.12 3.15 34.01 3.06
1976 2023 6.422701 CACATGTAAATCCGGACATTATACGT 59.577 38.462 6.12 3.83 34.01 3.57
1977 2024 6.422701 ACATGTAAATCCGGACATTATACGTG 59.577 38.462 22.02 22.02 34.01 4.49
1978 2025 4.746115 TGTAAATCCGGACATTATACGTGC 59.254 41.667 6.12 0.00 0.00 5.34
1979 2026 2.060326 ATCCGGACATTATACGTGCG 57.940 50.000 6.12 8.03 46.27 5.34
1980 2027 0.740149 TCCGGACATTATACGTGCGT 59.260 50.000 0.00 2.05 45.40 5.24
1981 2028 0.850217 CCGGACATTATACGTGCGTG 59.150 55.000 7.55 0.00 45.40 5.34
1982 2029 0.228742 CGGACATTATACGTGCGTGC 59.771 55.000 7.55 0.00 42.41 5.34
1983 2030 1.282817 GGACATTATACGTGCGTGCA 58.717 50.000 7.55 0.00 0.00 4.57
1984 2031 1.005347 GGACATTATACGTGCGTGCAC 60.005 52.381 14.81 14.81 43.01 4.57
1985 2032 1.003851 ACATTATACGTGCGTGCACC 58.996 50.000 18.51 4.74 43.49 5.01
1986 2033 1.003108 CATTATACGTGCGTGCACCA 58.997 50.000 18.51 7.62 43.49 4.17
1987 2034 1.395262 CATTATACGTGCGTGCACCAA 59.605 47.619 18.51 7.78 43.49 3.67
1988 2035 1.072391 TTATACGTGCGTGCACCAAG 58.928 50.000 18.51 14.39 43.49 3.61
1989 2036 0.038067 TATACGTGCGTGCACCAAGT 60.038 50.000 22.54 22.54 43.49 3.16
1990 2037 0.882927 ATACGTGCGTGCACCAAGTT 60.883 50.000 23.52 13.46 43.49 2.66
1991 2038 1.090625 TACGTGCGTGCACCAAGTTT 61.091 50.000 23.52 9.53 43.49 2.66
1992 2039 1.654137 CGTGCGTGCACCAAGTTTC 60.654 57.895 18.51 0.00 43.49 2.78
1993 2040 1.654137 GTGCGTGCACCAAGTTTCG 60.654 57.895 13.90 0.00 40.79 3.46
1994 2041 2.051345 GCGTGCACCAAGTTTCGG 60.051 61.111 12.15 0.00 0.00 4.30
1995 2042 2.830285 GCGTGCACCAAGTTTCGGT 61.830 57.895 12.15 0.00 37.16 4.69
2002 2049 2.836479 ACCAAGTTTCGGTGAAAACG 57.164 45.000 0.00 0.00 42.63 3.60
2003 2050 1.402613 ACCAAGTTTCGGTGAAAACGG 59.597 47.619 0.00 0.00 42.63 4.44
2004 2051 1.671845 CCAAGTTTCGGTGAAAACGGA 59.328 47.619 0.00 0.00 42.63 4.69
2005 2052 2.540157 CCAAGTTTCGGTGAAAACGGAC 60.540 50.000 0.00 0.00 42.63 4.79
2006 2053 2.320745 AGTTTCGGTGAAAACGGACT 57.679 45.000 0.00 0.00 42.63 3.85
2007 2054 2.635714 AGTTTCGGTGAAAACGGACTT 58.364 42.857 0.00 0.00 42.63 3.01
2008 2055 3.011818 AGTTTCGGTGAAAACGGACTTT 58.988 40.909 0.00 0.00 42.63 2.66
2009 2056 3.441222 AGTTTCGGTGAAAACGGACTTTT 59.559 39.130 0.00 0.00 42.63 2.27
2010 2057 4.082625 AGTTTCGGTGAAAACGGACTTTTT 60.083 37.500 0.00 0.00 42.63 1.94
2011 2058 3.408288 TCGGTGAAAACGGACTTTTTG 57.592 42.857 0.00 0.00 31.81 2.44
2012 2059 2.748532 TCGGTGAAAACGGACTTTTTGT 59.251 40.909 0.00 0.00 31.81 2.83
2013 2060 2.849473 CGGTGAAAACGGACTTTTTGTG 59.151 45.455 0.00 0.00 31.81 3.33
2014 2061 3.183754 GGTGAAAACGGACTTTTTGTGG 58.816 45.455 0.00 0.00 31.81 4.17
2015 2062 2.601314 GTGAAAACGGACTTTTTGTGGC 59.399 45.455 0.00 0.00 31.81 5.01
2016 2063 2.494073 TGAAAACGGACTTTTTGTGGCT 59.506 40.909 0.00 0.00 31.81 4.75
2017 2064 3.056465 TGAAAACGGACTTTTTGTGGCTT 60.056 39.130 0.00 0.00 31.81 4.35
2018 2065 4.158025 TGAAAACGGACTTTTTGTGGCTTA 59.842 37.500 0.00 0.00 31.81 3.09
2019 2066 4.929819 AAACGGACTTTTTGTGGCTTAT 57.070 36.364 0.00 0.00 0.00 1.73
2020 2067 3.915437 ACGGACTTTTTGTGGCTTATG 57.085 42.857 0.00 0.00 0.00 1.90
2021 2068 3.219281 ACGGACTTTTTGTGGCTTATGT 58.781 40.909 0.00 0.00 0.00 2.29
2022 2069 4.391155 ACGGACTTTTTGTGGCTTATGTA 58.609 39.130 0.00 0.00 0.00 2.29
2023 2070 4.822896 ACGGACTTTTTGTGGCTTATGTAA 59.177 37.500 0.00 0.00 0.00 2.41
2024 2071 5.299782 ACGGACTTTTTGTGGCTTATGTAAA 59.700 36.000 0.00 0.00 0.00 2.01
2025 2072 6.183360 ACGGACTTTTTGTGGCTTATGTAAAA 60.183 34.615 0.00 0.00 0.00 1.52
2026 2073 6.697892 CGGACTTTTTGTGGCTTATGTAAAAA 59.302 34.615 0.00 0.00 0.00 1.94
2049 2096 8.454570 AAAAAGACAATTTTTGATGCCTGATT 57.545 26.923 0.00 0.00 31.05 2.57
2050 2097 9.558396 AAAAAGACAATTTTTGATGCCTGATTA 57.442 25.926 0.00 0.00 31.05 1.75
2051 2098 9.729281 AAAAGACAATTTTTGATGCCTGATTAT 57.271 25.926 0.00 0.00 0.00 1.28
2054 2101 8.139989 AGACAATTTTTGATGCCTGATTATAGC 58.860 33.333 0.00 0.00 0.00 2.97
2055 2102 8.015185 ACAATTTTTGATGCCTGATTATAGCT 57.985 30.769 0.00 0.00 0.00 3.32
2056 2103 9.135189 ACAATTTTTGATGCCTGATTATAGCTA 57.865 29.630 0.00 0.00 0.00 3.32
2060 2107 8.922931 TTTTGATGCCTGATTATAGCTATTCA 57.077 30.769 12.39 9.60 0.00 2.57
2061 2108 7.912056 TTGATGCCTGATTATAGCTATTCAC 57.088 36.000 12.39 4.38 0.00 3.18
2062 2109 6.101997 TGATGCCTGATTATAGCTATTCACG 58.898 40.000 12.39 5.90 0.00 4.35
2063 2110 5.722021 TGCCTGATTATAGCTATTCACGA 57.278 39.130 12.39 0.00 0.00 4.35
2064 2111 5.714047 TGCCTGATTATAGCTATTCACGAG 58.286 41.667 12.39 2.48 0.00 4.18
2065 2112 5.105752 GCCTGATTATAGCTATTCACGAGG 58.894 45.833 12.39 11.78 0.00 4.63
2066 2113 5.105752 CCTGATTATAGCTATTCACGAGGC 58.894 45.833 12.39 0.00 0.00 4.70
2067 2114 5.336770 CCTGATTATAGCTATTCACGAGGCA 60.337 44.000 12.39 0.00 0.00 4.75
2068 2115 6.096673 TGATTATAGCTATTCACGAGGCAA 57.903 37.500 12.39 0.00 0.00 4.52
2069 2116 6.701340 TGATTATAGCTATTCACGAGGCAAT 58.299 36.000 12.39 1.95 0.00 3.56
2070 2117 7.161404 TGATTATAGCTATTCACGAGGCAATT 58.839 34.615 12.39 0.00 0.00 2.32
2071 2118 7.661437 TGATTATAGCTATTCACGAGGCAATTT 59.339 33.333 12.39 0.00 0.00 1.82
2072 2119 7.801716 TTATAGCTATTCACGAGGCAATTTT 57.198 32.000 12.39 0.00 0.00 1.82
2073 2120 4.361451 AGCTATTCACGAGGCAATTTTG 57.639 40.909 0.00 0.00 0.00 2.44
2074 2121 3.758554 AGCTATTCACGAGGCAATTTTGT 59.241 39.130 0.00 0.00 0.00 2.83
2075 2122 4.941263 AGCTATTCACGAGGCAATTTTGTA 59.059 37.500 0.00 0.00 0.00 2.41
2076 2123 5.590259 AGCTATTCACGAGGCAATTTTGTAT 59.410 36.000 0.00 0.00 0.00 2.29
2077 2124 5.909610 GCTATTCACGAGGCAATTTTGTATC 59.090 40.000 0.00 0.00 0.00 2.24
2078 2125 4.695217 TTCACGAGGCAATTTTGTATCC 57.305 40.909 0.00 0.00 0.00 2.59
2079 2126 3.013921 TCACGAGGCAATTTTGTATCCC 58.986 45.455 0.00 0.00 0.00 3.85
2080 2127 3.016736 CACGAGGCAATTTTGTATCCCT 58.983 45.455 0.00 0.00 0.00 4.20
2081 2128 3.443681 CACGAGGCAATTTTGTATCCCTT 59.556 43.478 0.00 0.00 0.00 3.95
2082 2129 4.082245 CACGAGGCAATTTTGTATCCCTTT 60.082 41.667 0.00 0.00 0.00 3.11
2083 2130 4.526650 ACGAGGCAATTTTGTATCCCTTTT 59.473 37.500 0.00 0.00 0.00 2.27
2084 2131 5.712917 ACGAGGCAATTTTGTATCCCTTTTA 59.287 36.000 0.00 0.00 0.00 1.52
2085 2132 6.379988 ACGAGGCAATTTTGTATCCCTTTTAT 59.620 34.615 0.00 0.00 0.00 1.40
2086 2133 7.558444 ACGAGGCAATTTTGTATCCCTTTTATA 59.442 33.333 0.00 0.00 0.00 0.98
2087 2134 7.860872 CGAGGCAATTTTGTATCCCTTTTATAC 59.139 37.037 0.00 0.00 0.00 1.47
2088 2135 8.602472 AGGCAATTTTGTATCCCTTTTATACA 57.398 30.769 0.00 0.00 37.89 2.29
2089 2136 9.212593 AGGCAATTTTGTATCCCTTTTATACAT 57.787 29.630 0.00 0.00 39.06 2.29
2090 2137 9.260002 GGCAATTTTGTATCCCTTTTATACATG 57.740 33.333 0.00 0.00 39.06 3.21
2091 2138 8.764287 GCAATTTTGTATCCCTTTTATACATGC 58.236 33.333 0.00 0.00 39.06 4.06
2092 2139 9.260002 CAATTTTGTATCCCTTTTATACATGCC 57.740 33.333 0.00 0.00 39.06 4.40
2093 2140 7.962995 TTTTGTATCCCTTTTATACATGCCA 57.037 32.000 0.00 0.00 39.06 4.92
2094 2141 6.952773 TTGTATCCCTTTTATACATGCCAC 57.047 37.500 0.00 0.00 39.06 5.01
2095 2142 6.007485 TGTATCCCTTTTATACATGCCACA 57.993 37.500 0.00 0.00 35.44 4.17
2096 2143 6.427441 TGTATCCCTTTTATACATGCCACAA 58.573 36.000 0.00 0.00 35.44 3.33
2097 2144 6.892456 TGTATCCCTTTTATACATGCCACAAA 59.108 34.615 0.00 0.00 35.44 2.83
2098 2145 6.865834 ATCCCTTTTATACATGCCACAAAA 57.134 33.333 0.00 0.00 0.00 2.44
2099 2146 6.865834 TCCCTTTTATACATGCCACAAAAT 57.134 33.333 0.00 0.00 0.00 1.82
2100 2147 7.962995 TCCCTTTTATACATGCCACAAAATA 57.037 32.000 0.00 0.00 0.00 1.40
2101 2148 8.546083 TCCCTTTTATACATGCCACAAAATAT 57.454 30.769 0.00 0.00 0.00 1.28
2102 2149 8.420222 TCCCTTTTATACATGCCACAAAATATG 58.580 33.333 0.00 0.00 0.00 1.78
2103 2150 8.203485 CCCTTTTATACATGCCACAAAATATGT 58.797 33.333 0.00 0.00 45.34 2.29
2104 2151 9.248291 CCTTTTATACATGCCACAAAATATGTC 57.752 33.333 0.00 0.00 41.46 3.06
2105 2152 9.248291 CTTTTATACATGCCACAAAATATGTCC 57.752 33.333 0.00 0.00 41.46 4.02
2106 2153 8.532186 TTTATACATGCCACAAAATATGTCCT 57.468 30.769 0.00 0.00 41.46 3.85
2107 2154 9.634021 TTTATACATGCCACAAAATATGTCCTA 57.366 29.630 0.00 0.00 41.46 2.94
2108 2155 9.806448 TTATACATGCCACAAAATATGTCCTAT 57.194 29.630 0.00 0.00 41.46 2.57
2109 2156 8.710749 ATACATGCCACAAAATATGTCCTATT 57.289 30.769 0.00 0.00 41.46 1.73
2110 2157 7.042797 ACATGCCACAAAATATGTCCTATTC 57.957 36.000 0.00 0.00 41.46 1.75
2111 2158 6.835488 ACATGCCACAAAATATGTCCTATTCT 59.165 34.615 0.00 0.00 41.46 2.40
2112 2159 7.342799 ACATGCCACAAAATATGTCCTATTCTT 59.657 33.333 0.00 0.00 41.46 2.52
2113 2160 7.716799 TGCCACAAAATATGTCCTATTCTTT 57.283 32.000 0.00 0.00 41.46 2.52
2114 2161 8.133024 TGCCACAAAATATGTCCTATTCTTTT 57.867 30.769 0.00 0.00 41.46 2.27
2115 2162 8.592809 TGCCACAAAATATGTCCTATTCTTTTT 58.407 29.630 0.00 0.00 41.46 1.94
2125 2172 8.995027 ATGTCCTATTCTTTTTATACATGCCA 57.005 30.769 0.00 0.00 0.00 4.92
2126 2173 8.220755 TGTCCTATTCTTTTTATACATGCCAC 57.779 34.615 0.00 0.00 0.00 5.01
2127 2174 7.831690 TGTCCTATTCTTTTTATACATGCCACA 59.168 33.333 0.00 0.00 0.00 4.17
2128 2175 8.682710 GTCCTATTCTTTTTATACATGCCACAA 58.317 33.333 0.00 0.00 0.00 3.33
2129 2176 9.249053 TCCTATTCTTTTTATACATGCCACAAA 57.751 29.630 0.00 0.00 0.00 2.83
2130 2177 9.868277 CCTATTCTTTTTATACATGCCACAAAA 57.132 29.630 0.00 0.00 0.00 2.44
2137 2184 9.593134 TTTTTATACATGCCACAAAATATGTCC 57.407 29.630 0.00 0.00 41.46 4.02
2138 2185 8.532186 TTTATACATGCCACAAAATATGTCCT 57.468 30.769 0.00 0.00 41.46 3.85
2139 2186 9.634021 TTTATACATGCCACAAAATATGTCCTA 57.366 29.630 0.00 0.00 41.46 2.94
2140 2187 9.806448 TTATACATGCCACAAAATATGTCCTAT 57.194 29.630 0.00 0.00 41.46 2.57
2141 2188 8.710749 ATACATGCCACAAAATATGTCCTATT 57.289 30.769 0.00 0.00 41.46 1.73
2142 2189 7.422465 ACATGCCACAAAATATGTCCTATTT 57.578 32.000 0.00 0.00 41.46 1.40
2143 2190 7.491682 ACATGCCACAAAATATGTCCTATTTC 58.508 34.615 0.00 0.00 41.46 2.17
2144 2191 7.123997 ACATGCCACAAAATATGTCCTATTTCA 59.876 33.333 0.00 0.00 41.46 2.69
2145 2192 6.862209 TGCCACAAAATATGTCCTATTTCAC 58.138 36.000 0.00 0.00 41.46 3.18
2146 2193 6.127479 TGCCACAAAATATGTCCTATTTCACC 60.127 38.462 0.00 0.00 41.46 4.02
2147 2194 6.494842 CCACAAAATATGTCCTATTTCACCG 58.505 40.000 0.00 0.00 41.46 4.94
2148 2195 6.317642 CCACAAAATATGTCCTATTTCACCGA 59.682 38.462 0.00 0.00 41.46 4.69
2149 2196 7.148154 CCACAAAATATGTCCTATTTCACCGAA 60.148 37.037 0.00 0.00 41.46 4.30
2150 2197 8.240682 CACAAAATATGTCCTATTTCACCGAAA 58.759 33.333 0.00 0.00 41.46 3.46
2151 2198 8.241367 ACAAAATATGTCCTATTTCACCGAAAC 58.759 33.333 0.00 0.00 37.96 2.78
2152 2199 8.458843 CAAAATATGTCCTATTTCACCGAAACT 58.541 33.333 0.00 0.00 38.76 2.66
2153 2200 8.575649 AAATATGTCCTATTTCACCGAAACTT 57.424 30.769 0.00 0.00 35.54 2.66
2154 2201 8.575649 AATATGTCCTATTTCACCGAAACTTT 57.424 30.769 0.00 0.00 34.23 2.66
2155 2202 5.682943 TGTCCTATTTCACCGAAACTTTG 57.317 39.130 0.00 0.00 34.23 2.77
2156 2203 5.127491 TGTCCTATTTCACCGAAACTTTGT 58.873 37.500 0.00 0.00 34.23 2.83
2157 2204 5.008217 TGTCCTATTTCACCGAAACTTTGTG 59.992 40.000 0.00 0.00 34.23 3.33
2158 2205 5.008316 GTCCTATTTCACCGAAACTTTGTGT 59.992 40.000 0.00 0.00 34.23 3.72
2159 2206 5.008217 TCCTATTTCACCGAAACTTTGTGTG 59.992 40.000 0.00 0.00 34.23 3.82
2160 2207 2.553079 TTCACCGAAACTTTGTGTGC 57.447 45.000 0.00 0.00 0.00 4.57
2161 2208 0.375454 TCACCGAAACTTTGTGTGCG 59.625 50.000 0.00 0.00 0.00 5.34
2162 2209 0.591236 CACCGAAACTTTGTGTGCGG 60.591 55.000 0.00 0.00 46.29 5.69
2163 2210 0.745128 ACCGAAACTTTGTGTGCGGA 60.745 50.000 0.00 0.00 44.80 5.54
2164 2211 0.316689 CCGAAACTTTGTGTGCGGAC 60.317 55.000 0.00 0.00 44.80 4.79
2165 2212 0.375454 CGAAACTTTGTGTGCGGACA 59.625 50.000 5.33 5.33 0.00 4.02
2166 2213 1.002900 CGAAACTTTGTGTGCGGACAT 60.003 47.619 14.45 0.00 33.63 3.06
2167 2214 2.222213 CGAAACTTTGTGTGCGGACATA 59.778 45.455 14.45 7.96 33.63 2.29
2168 2215 3.120338 CGAAACTTTGTGTGCGGACATAT 60.120 43.478 14.45 0.00 33.63 1.78
2169 2216 3.829886 AACTTTGTGTGCGGACATATG 57.170 42.857 14.45 9.21 33.63 1.78
2170 2217 3.052455 ACTTTGTGTGCGGACATATGA 57.948 42.857 14.45 1.62 33.63 2.15
2171 2218 3.609853 ACTTTGTGTGCGGACATATGAT 58.390 40.909 14.45 0.00 33.63 2.45
2172 2219 3.374988 ACTTTGTGTGCGGACATATGATG 59.625 43.478 14.45 4.75 33.63 3.07
2187 2234 6.690704 CATATGATGTCCGTATGTACACAC 57.309 41.667 0.00 0.00 39.04 3.82
2188 2235 3.139603 TGATGTCCGTATGTACACACG 57.860 47.619 19.49 19.49 37.89 4.49
2269 2316 5.195848 AGGTGTATCTATACCTAGGAGCC 57.804 47.826 17.98 0.00 44.65 4.70
2270 2317 4.606697 AGGTGTATCTATACCTAGGAGCCA 59.393 45.833 17.98 0.00 44.65 4.75
2271 2318 5.076039 AGGTGTATCTATACCTAGGAGCCAA 59.924 44.000 17.98 0.00 44.65 4.52
2272 2319 5.778750 GGTGTATCTATACCTAGGAGCCAAA 59.221 44.000 17.98 0.00 34.94 3.28
2273 2320 6.269307 GGTGTATCTATACCTAGGAGCCAAAA 59.731 42.308 17.98 0.00 34.94 2.44
2274 2321 7.038231 GGTGTATCTATACCTAGGAGCCAAAAT 60.038 40.741 17.98 2.69 34.94 1.82
2275 2322 7.819900 GTGTATCTATACCTAGGAGCCAAAATG 59.180 40.741 17.98 0.00 32.33 2.32
2276 2323 5.228945 TCTATACCTAGGAGCCAAAATGC 57.771 43.478 17.98 0.00 0.00 3.56
2277 2324 2.729028 TACCTAGGAGCCAAAATGCC 57.271 50.000 17.98 0.00 0.00 4.40
2278 2325 0.704076 ACCTAGGAGCCAAAATGCCA 59.296 50.000 17.98 0.00 0.00 4.92
2279 2326 1.106285 CCTAGGAGCCAAAATGCCAC 58.894 55.000 1.05 0.00 0.00 5.01
2280 2327 1.341383 CCTAGGAGCCAAAATGCCACT 60.341 52.381 1.05 0.00 0.00 4.00
2281 2328 2.019984 CTAGGAGCCAAAATGCCACTC 58.980 52.381 0.00 0.00 0.00 3.51
2282 2329 0.407139 AGGAGCCAAAATGCCACTCT 59.593 50.000 0.00 0.00 0.00 3.24
2283 2330 0.813821 GGAGCCAAAATGCCACTCTC 59.186 55.000 0.00 0.00 0.00 3.20
2284 2331 0.449388 GAGCCAAAATGCCACTCTCG 59.551 55.000 0.00 0.00 0.00 4.04
2285 2332 0.250901 AGCCAAAATGCCACTCTCGT 60.251 50.000 0.00 0.00 0.00 4.18
2286 2333 0.598065 GCCAAAATGCCACTCTCGTT 59.402 50.000 0.00 0.00 0.00 3.85
2287 2334 1.810151 GCCAAAATGCCACTCTCGTTA 59.190 47.619 0.00 0.00 0.00 3.18
2288 2335 2.423538 GCCAAAATGCCACTCTCGTTAT 59.576 45.455 0.00 0.00 0.00 1.89
2289 2336 3.731867 GCCAAAATGCCACTCTCGTTATG 60.732 47.826 0.00 0.00 0.00 1.90
2290 2337 3.440173 CCAAAATGCCACTCTCGTTATGT 59.560 43.478 0.00 0.00 0.00 2.29
2291 2338 4.082787 CCAAAATGCCACTCTCGTTATGTT 60.083 41.667 0.00 0.00 0.00 2.71
2292 2339 5.460646 CAAAATGCCACTCTCGTTATGTTT 58.539 37.500 0.00 0.00 0.00 2.83
2293 2340 6.348950 CCAAAATGCCACTCTCGTTATGTTTA 60.349 38.462 0.00 0.00 0.00 2.01
2336 2384 4.618489 CGACAGAATCCACAAATTTTCTGC 59.382 41.667 12.94 7.16 45.66 4.26
2426 2539 7.506938 TGTTGTTAGTACTTACTAGGAAGGTGT 59.493 37.037 19.11 5.08 39.69 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.299978 GAGTCTGGCATATCTACGGTTTC 58.700 47.826 0.00 0.00 0.00 2.78
1 2 3.243434 CGAGTCTGGCATATCTACGGTTT 60.243 47.826 0.00 0.00 0.00 3.27
2 3 2.293677 CGAGTCTGGCATATCTACGGTT 59.706 50.000 0.00 0.00 0.00 4.44
3 4 1.880675 CGAGTCTGGCATATCTACGGT 59.119 52.381 0.00 0.00 0.00 4.83
4 5 1.200252 CCGAGTCTGGCATATCTACGG 59.800 57.143 0.00 0.00 0.00 4.02
5 6 2.620779 CCGAGTCTGGCATATCTACG 57.379 55.000 0.00 0.00 0.00 3.51
16 17 1.089920 CAAATTCCAGGCCGAGTCTG 58.910 55.000 0.00 0.00 34.71 3.51
17 18 0.678048 GCAAATTCCAGGCCGAGTCT 60.678 55.000 0.00 0.00 0.00 3.24
18 19 0.960364 TGCAAATTCCAGGCCGAGTC 60.960 55.000 0.00 0.00 0.00 3.36
19 20 0.323725 ATGCAAATTCCAGGCCGAGT 60.324 50.000 0.00 0.00 0.00 4.18
20 21 0.383231 GATGCAAATTCCAGGCCGAG 59.617 55.000 0.00 0.00 0.00 4.63
21 22 1.037030 GGATGCAAATTCCAGGCCGA 61.037 55.000 0.00 0.00 33.21 5.54
22 23 1.039233 AGGATGCAAATTCCAGGCCG 61.039 55.000 7.56 0.00 35.59 6.13
23 24 0.462789 CAGGATGCAAATTCCAGGCC 59.537 55.000 7.56 0.00 35.59 5.19
84 85 1.080298 CCGGTATATTCGGCCGTCC 60.080 63.158 27.15 16.61 43.56 4.79
85 86 4.565531 CCGGTATATTCGGCCGTC 57.434 61.111 27.15 9.53 43.56 4.79
104 105 2.841215 ACGAATTTTCTGTCCGGAACA 58.159 42.857 5.23 6.11 36.18 3.18
105 106 3.364664 GGAACGAATTTTCTGTCCGGAAC 60.365 47.826 5.23 0.59 0.00 3.62
106 107 2.809696 GGAACGAATTTTCTGTCCGGAA 59.190 45.455 5.23 0.00 0.00 4.30
107 108 2.419667 GGAACGAATTTTCTGTCCGGA 58.580 47.619 0.00 0.00 0.00 5.14
108 109 1.467342 GGGAACGAATTTTCTGTCCGG 59.533 52.381 0.00 0.00 0.00 5.14
109 110 2.894307 GGGAACGAATTTTCTGTCCG 57.106 50.000 0.00 0.00 0.00 4.79
123 124 2.401351 GTTCATATAGCGGACGGGAAC 58.599 52.381 0.00 0.00 0.00 3.62
124 125 1.001048 CGTTCATATAGCGGACGGGAA 60.001 52.381 0.00 0.00 0.00 3.97
125 126 0.594602 CGTTCATATAGCGGACGGGA 59.405 55.000 0.00 0.00 0.00 5.14
126 127 0.594602 TCGTTCATATAGCGGACGGG 59.405 55.000 6.06 0.00 31.92 5.28
127 128 2.631418 ATCGTTCATATAGCGGACGG 57.369 50.000 6.06 0.00 31.92 4.79
128 129 6.076247 CGTAATAATCGTTCATATAGCGGACG 60.076 42.308 0.31 0.31 31.92 4.79
129 130 6.195983 CCGTAATAATCGTTCATATAGCGGAC 59.804 42.308 0.00 0.00 34.06 4.79
130 131 6.260377 CCGTAATAATCGTTCATATAGCGGA 58.740 40.000 0.00 0.00 34.06 5.54
131 132 5.051907 GCCGTAATAATCGTTCATATAGCGG 60.052 44.000 0.00 0.00 34.69 5.52
132 133 5.742453 AGCCGTAATAATCGTTCATATAGCG 59.258 40.000 0.00 0.00 0.00 4.26
133 134 6.750501 TCAGCCGTAATAATCGTTCATATAGC 59.249 38.462 0.00 0.00 0.00 2.97
134 135 7.220300 GGTCAGCCGTAATAATCGTTCATATAG 59.780 40.741 0.00 0.00 0.00 1.31
135 136 7.031372 GGTCAGCCGTAATAATCGTTCATATA 58.969 38.462 0.00 0.00 0.00 0.86
136 137 5.867716 GGTCAGCCGTAATAATCGTTCATAT 59.132 40.000 0.00 0.00 0.00 1.78
137 138 5.221283 TGGTCAGCCGTAATAATCGTTCATA 60.221 40.000 0.00 0.00 37.67 2.15
138 139 4.056050 GGTCAGCCGTAATAATCGTTCAT 58.944 43.478 0.00 0.00 0.00 2.57
139 140 3.119065 TGGTCAGCCGTAATAATCGTTCA 60.119 43.478 0.00 0.00 37.67 3.18
140 141 3.244579 GTGGTCAGCCGTAATAATCGTTC 59.755 47.826 0.00 0.00 37.67 3.95
141 142 3.192466 GTGGTCAGCCGTAATAATCGTT 58.808 45.455 0.00 0.00 37.67 3.85
142 143 2.166870 TGTGGTCAGCCGTAATAATCGT 59.833 45.455 0.00 0.00 37.67 3.73
143 144 2.816689 TGTGGTCAGCCGTAATAATCG 58.183 47.619 0.00 0.00 37.67 3.34
144 145 4.127171 ACATGTGGTCAGCCGTAATAATC 58.873 43.478 0.00 0.00 37.67 1.75
145 146 4.127171 GACATGTGGTCAGCCGTAATAAT 58.873 43.478 1.15 0.00 46.19 1.28
146 147 3.527533 GACATGTGGTCAGCCGTAATAA 58.472 45.455 1.15 0.00 46.19 1.40
147 148 3.173668 GACATGTGGTCAGCCGTAATA 57.826 47.619 1.15 0.00 46.19 0.98
148 149 2.024176 GACATGTGGTCAGCCGTAAT 57.976 50.000 1.15 0.00 46.19 1.89
149 150 3.525619 GACATGTGGTCAGCCGTAA 57.474 52.632 1.15 0.00 46.19 3.18
160 161 6.369890 GGATAGCTTACCACATATGACATGTG 59.630 42.308 10.38 10.36 46.49 3.21
161 162 6.043127 TGGATAGCTTACCACATATGACATGT 59.957 38.462 10.38 0.00 0.00 3.21
162 163 6.466812 TGGATAGCTTACCACATATGACATG 58.533 40.000 10.38 0.00 0.00 3.21
163 164 6.686484 TGGATAGCTTACCACATATGACAT 57.314 37.500 10.38 0.00 0.00 3.06
164 165 6.493189 TTGGATAGCTTACCACATATGACA 57.507 37.500 10.38 0.00 35.81 3.58
165 166 7.801716 TTTTGGATAGCTTACCACATATGAC 57.198 36.000 10.38 0.00 35.81 3.06
188 189 9.936759 ATAATCGTTTTGATATGTTGGGTTTTT 57.063 25.926 0.00 0.00 35.84 1.94
189 190 9.936759 AATAATCGTTTTGATATGTTGGGTTTT 57.063 25.926 0.00 0.00 35.84 2.43
192 193 8.339714 CGTAATAATCGTTTTGATATGTTGGGT 58.660 33.333 0.00 0.00 35.84 4.51
193 194 7.801315 CCGTAATAATCGTTTTGATATGTTGGG 59.199 37.037 0.00 0.00 35.84 4.12
194 195 7.322699 GCCGTAATAATCGTTTTGATATGTTGG 59.677 37.037 0.00 0.00 35.84 3.77
195 196 8.067784 AGCCGTAATAATCGTTTTGATATGTTG 58.932 33.333 0.00 0.00 35.84 3.33
196 197 8.067784 CAGCCGTAATAATCGTTTTGATATGTT 58.932 33.333 0.00 0.00 35.84 2.71
197 198 7.439955 TCAGCCGTAATAATCGTTTTGATATGT 59.560 33.333 0.00 0.00 35.84 2.29
198 199 7.740346 GTCAGCCGTAATAATCGTTTTGATATG 59.260 37.037 0.00 0.00 35.84 1.78
199 200 7.358931 CGTCAGCCGTAATAATCGTTTTGATAT 60.359 37.037 0.00 0.00 35.84 1.63
200 201 6.074729 CGTCAGCCGTAATAATCGTTTTGATA 60.075 38.462 0.00 0.00 35.84 2.15
201 202 5.276678 CGTCAGCCGTAATAATCGTTTTGAT 60.277 40.000 0.00 0.00 39.67 2.57
202 203 4.031991 CGTCAGCCGTAATAATCGTTTTGA 59.968 41.667 0.00 0.00 0.00 2.69
203 204 4.260670 CGTCAGCCGTAATAATCGTTTTG 58.739 43.478 0.00 0.00 0.00 2.44
204 205 3.307782 CCGTCAGCCGTAATAATCGTTTT 59.692 43.478 0.00 0.00 33.66 2.43
205 206 2.861935 CCGTCAGCCGTAATAATCGTTT 59.138 45.455 0.00 0.00 33.66 3.60
206 207 2.466846 CCGTCAGCCGTAATAATCGTT 58.533 47.619 0.00 0.00 33.66 3.85
251 252 4.109675 GCGGGGGCTAGGAGCAAA 62.110 66.667 0.21 0.00 44.75 3.68
274 277 1.337167 CGTGTGCTGATCTCCTGTTCA 60.337 52.381 0.00 0.00 0.00 3.18
292 295 0.036306 AGCCCGATGGTTTCTTTCGT 59.964 50.000 0.00 0.00 0.00 3.85
297 300 2.286365 TTTTGAGCCCGATGGTTTCT 57.714 45.000 0.00 0.00 0.00 2.52
380 383 0.034198 TGATTTTCTGCCGTCGGTGA 59.966 50.000 13.94 9.00 0.00 4.02
410 417 1.399727 GGTCGCGTGAGGATTTGTTTG 60.400 52.381 5.77 0.00 0.00 2.93
411 418 0.872388 GGTCGCGTGAGGATTTGTTT 59.128 50.000 5.77 0.00 0.00 2.83
412 419 0.250124 TGGTCGCGTGAGGATTTGTT 60.250 50.000 5.77 0.00 0.00 2.83
413 420 0.250124 TTGGTCGCGTGAGGATTTGT 60.250 50.000 5.77 0.00 0.00 2.83
414 421 1.086696 ATTGGTCGCGTGAGGATTTG 58.913 50.000 5.77 0.00 0.00 2.32
415 422 1.086696 CATTGGTCGCGTGAGGATTT 58.913 50.000 5.77 0.00 0.00 2.17
416 423 0.744414 CCATTGGTCGCGTGAGGATT 60.744 55.000 5.77 0.00 0.00 3.01
417 424 1.153369 CCATTGGTCGCGTGAGGAT 60.153 57.895 5.77 0.00 0.00 3.24
422 429 2.126888 GTTGCCATTGGTCGCGTG 60.127 61.111 5.77 0.00 0.00 5.34
424 431 1.226379 GATGTTGCCATTGGTCGCG 60.226 57.895 0.00 0.00 0.00 5.87
446 453 5.293324 TCGCAGGATAATGTTTGACATACAC 59.707 40.000 0.50 0.00 37.97 2.90
455 462 1.014352 GCGGTCGCAGGATAATGTTT 58.986 50.000 10.67 0.00 41.49 2.83
632 643 4.554363 CGCCGCCTCGTACCTCTG 62.554 72.222 0.00 0.00 0.00 3.35
651 662 3.957535 CTGCGAATGGATGCCCGC 61.958 66.667 8.37 8.37 46.82 6.13
652 663 2.203056 TCTGCGAATGGATGCCCG 60.203 61.111 0.00 0.00 34.29 6.13
653 664 2.550101 GCTCTGCGAATGGATGCCC 61.550 63.158 0.00 0.00 0.00 5.36
661 672 1.086067 CCACGTCATGCTCTGCGAAT 61.086 55.000 0.00 0.00 0.00 3.34
711 722 1.856265 GCTGGTGAGAACGGCTTTGG 61.856 60.000 0.00 0.00 37.26 3.28
754 766 0.245539 TTTTCCGACGCCTCTCGAAT 59.754 50.000 0.00 0.00 41.67 3.34
785 797 2.657237 CCGTTGGTCTCCTTCGCT 59.343 61.111 0.00 0.00 0.00 4.93
910 923 3.129502 CCTGCCACGCTCACCATG 61.130 66.667 0.00 0.00 0.00 3.66
943 963 0.721154 TTGTGATTGTGATCGCTCGC 59.279 50.000 7.94 5.07 42.12 5.03
951 971 3.120234 GCGTGATGTGATTGTGATTGTGA 60.120 43.478 0.00 0.00 0.00 3.58
1389 1421 1.211456 CCCTCATCCTCCTTTGCTCT 58.789 55.000 0.00 0.00 0.00 4.09
1395 1427 0.267356 CCTCCTCCCTCATCCTCCTT 59.733 60.000 0.00 0.00 0.00 3.36
1558 1592 5.997746 CAAAGAATTTCTACTGACCCACAGA 59.002 40.000 0.00 0.00 42.39 3.41
1565 1599 8.534778 CAAAGCAAACAAAGAATTTCTACTGAC 58.465 33.333 12.87 3.27 35.03 3.51
1594 1628 7.303182 ACGGATTAATCTATGATCAGGTGAA 57.697 36.000 14.95 0.00 0.00 3.18
1699 1738 0.179032 TCCAGAAAAAGGCACGCAGA 60.179 50.000 0.00 0.00 0.00 4.26
1761 1806 9.646336 GGCAGTACATAATAATCTGTAAAAACG 57.354 33.333 0.00 0.00 30.14 3.60
1853 1900 8.702438 CAAAGTGAATTTCCAACAACATATGAC 58.298 33.333 10.38 0.00 0.00 3.06
1855 1902 8.702438 GTCAAAGTGAATTTCCAACAACATATG 58.298 33.333 0.00 0.00 0.00 1.78
1857 1904 8.006298 AGTCAAAGTGAATTTCCAACAACATA 57.994 30.769 0.00 0.00 0.00 2.29
1858 1905 6.877236 AGTCAAAGTGAATTTCCAACAACAT 58.123 32.000 0.00 0.00 0.00 2.71
1859 1906 6.071672 TGAGTCAAAGTGAATTTCCAACAACA 60.072 34.615 0.00 0.00 0.00 3.33
1860 1907 6.329496 TGAGTCAAAGTGAATTTCCAACAAC 58.671 36.000 0.00 0.00 0.00 3.32
1861 1908 6.522625 TGAGTCAAAGTGAATTTCCAACAA 57.477 33.333 0.00 0.00 0.00 2.83
1862 1909 6.713762 ATGAGTCAAAGTGAATTTCCAACA 57.286 33.333 0.00 0.00 0.00 3.33
1863 1910 7.040409 ACCTATGAGTCAAAGTGAATTTCCAAC 60.040 37.037 0.00 0.00 0.00 3.77
1864 1911 7.004086 ACCTATGAGTCAAAGTGAATTTCCAA 58.996 34.615 0.00 0.00 0.00 3.53
1865 1912 6.430925 CACCTATGAGTCAAAGTGAATTTCCA 59.569 38.462 12.75 0.00 0.00 3.53
1866 1913 6.431234 ACACCTATGAGTCAAAGTGAATTTCC 59.569 38.462 20.92 0.00 0.00 3.13
1867 1914 7.440523 ACACCTATGAGTCAAAGTGAATTTC 57.559 36.000 20.92 0.00 0.00 2.17
1870 1917 9.770097 CATATACACCTATGAGTCAAAGTGAAT 57.230 33.333 20.92 11.65 31.92 2.57
1871 1918 7.710907 GCATATACACCTATGAGTCAAAGTGAA 59.289 37.037 20.92 10.39 31.92 3.18
1872 1919 7.147742 TGCATATACACCTATGAGTCAAAGTGA 60.148 37.037 20.92 9.71 31.92 3.41
1873 1920 6.986231 TGCATATACACCTATGAGTCAAAGTG 59.014 38.462 15.27 15.27 31.92 3.16
1874 1921 6.986817 GTGCATATACACCTATGAGTCAAAGT 59.013 38.462 0.00 0.00 34.35 2.66
1875 1922 7.413475 GTGCATATACACCTATGAGTCAAAG 57.587 40.000 0.00 0.00 34.35 2.77
1888 1935 6.935741 TTTAGACAATGGGTGCATATACAC 57.064 37.500 0.00 0.00 39.94 2.90
1889 1936 8.214364 TGTATTTAGACAATGGGTGCATATACA 58.786 33.333 0.00 0.00 0.00 2.29
1890 1937 8.504005 GTGTATTTAGACAATGGGTGCATATAC 58.496 37.037 0.00 0.00 0.00 1.47
1891 1938 8.214364 TGTGTATTTAGACAATGGGTGCATATA 58.786 33.333 0.00 0.00 0.00 0.86
1892 1939 7.059788 TGTGTATTTAGACAATGGGTGCATAT 58.940 34.615 0.00 0.00 0.00 1.78
1893 1940 6.418946 TGTGTATTTAGACAATGGGTGCATA 58.581 36.000 0.00 0.00 0.00 3.14
1894 1941 5.260424 TGTGTATTTAGACAATGGGTGCAT 58.740 37.500 0.00 0.00 0.00 3.96
1895 1942 4.657013 TGTGTATTTAGACAATGGGTGCA 58.343 39.130 0.00 0.00 0.00 4.57
1896 1943 5.835113 ATGTGTATTTAGACAATGGGTGC 57.165 39.130 0.00 0.00 32.98 5.01
1943 1990 5.020132 TCCGGATTTACATGTGGGATTTTT 58.980 37.500 9.11 0.00 0.00 1.94
1944 1991 4.401202 GTCCGGATTTACATGTGGGATTTT 59.599 41.667 7.81 0.00 0.00 1.82
1945 1992 3.951680 GTCCGGATTTACATGTGGGATTT 59.048 43.478 7.81 0.00 0.00 2.17
1946 1993 3.053991 TGTCCGGATTTACATGTGGGATT 60.054 43.478 7.81 0.00 0.00 3.01
1947 1994 2.507886 TGTCCGGATTTACATGTGGGAT 59.492 45.455 7.81 0.00 0.00 3.85
1948 1995 1.909986 TGTCCGGATTTACATGTGGGA 59.090 47.619 7.81 2.76 0.00 4.37
1949 1996 2.411628 TGTCCGGATTTACATGTGGG 57.588 50.000 7.81 0.30 0.00 4.61
1950 1997 6.128661 CGTATAATGTCCGGATTTACATGTGG 60.129 42.308 7.81 0.00 36.47 4.17
1951 1998 6.422701 ACGTATAATGTCCGGATTTACATGTG 59.577 38.462 7.81 0.00 36.47 3.21
1952 1999 6.422701 CACGTATAATGTCCGGATTTACATGT 59.577 38.462 7.81 7.40 36.47 3.21
1953 2000 6.617741 GCACGTATAATGTCCGGATTTACATG 60.618 42.308 7.81 6.74 36.47 3.21
1954 2001 5.407387 GCACGTATAATGTCCGGATTTACAT 59.593 40.000 7.81 3.61 37.94 2.29
1955 2002 4.746115 GCACGTATAATGTCCGGATTTACA 59.254 41.667 7.81 0.55 0.00 2.41
1956 2003 4.143473 CGCACGTATAATGTCCGGATTTAC 60.143 45.833 7.81 4.89 0.00 2.01
1957 2004 3.982701 CGCACGTATAATGTCCGGATTTA 59.017 43.478 7.81 9.90 0.00 1.40
1958 2005 2.798283 CGCACGTATAATGTCCGGATTT 59.202 45.455 7.81 7.69 0.00 2.17
1959 2006 2.223876 ACGCACGTATAATGTCCGGATT 60.224 45.455 7.81 0.28 0.00 3.01
1960 2007 1.338973 ACGCACGTATAATGTCCGGAT 59.661 47.619 7.81 0.00 0.00 4.18
1961 2008 0.740149 ACGCACGTATAATGTCCGGA 59.260 50.000 0.00 0.00 0.00 5.14
1962 2009 0.850217 CACGCACGTATAATGTCCGG 59.150 55.000 0.00 0.00 0.00 5.14
1963 2010 0.228742 GCACGCACGTATAATGTCCG 59.771 55.000 0.00 0.00 0.00 4.79
1964 2011 1.005347 GTGCACGCACGTATAATGTCC 60.005 52.381 6.38 0.00 37.19 4.02
1965 2012 2.347023 GTGCACGCACGTATAATGTC 57.653 50.000 6.38 0.00 37.19 3.06
1975 2022 1.654137 CGAAACTTGGTGCACGCAC 60.654 57.895 13.78 13.78 45.49 5.34
1976 2023 2.712539 CGAAACTTGGTGCACGCA 59.287 55.556 11.45 7.36 0.00 5.24
1977 2024 2.051345 CCGAAACTTGGTGCACGC 60.051 61.111 11.45 4.50 0.00 5.34
1978 2025 3.416490 ACCGAAACTTGGTGCACG 58.584 55.556 11.45 0.00 38.60 5.34
1983 2030 1.402613 CCGTTTTCACCGAAACTTGGT 59.597 47.619 0.00 0.00 41.47 3.67
1984 2031 1.671845 TCCGTTTTCACCGAAACTTGG 59.328 47.619 0.00 0.00 37.37 3.61
1985 2032 2.353579 AGTCCGTTTTCACCGAAACTTG 59.646 45.455 0.00 0.00 37.37 3.16
1986 2033 2.635714 AGTCCGTTTTCACCGAAACTT 58.364 42.857 0.00 0.00 37.37 2.66
1987 2034 2.320745 AGTCCGTTTTCACCGAAACT 57.679 45.000 0.00 0.00 37.37 2.66
1988 2035 3.409851 AAAGTCCGTTTTCACCGAAAC 57.590 42.857 0.00 0.00 36.43 2.78
1989 2036 4.167268 CAAAAAGTCCGTTTTCACCGAAA 58.833 39.130 0.00 0.00 37.37 3.46
1990 2037 3.190953 ACAAAAAGTCCGTTTTCACCGAA 59.809 39.130 0.00 0.00 37.37 4.30
1991 2038 2.748532 ACAAAAAGTCCGTTTTCACCGA 59.251 40.909 0.00 0.00 37.37 4.69
1992 2039 2.849473 CACAAAAAGTCCGTTTTCACCG 59.151 45.455 0.00 0.00 37.37 4.94
1993 2040 3.183754 CCACAAAAAGTCCGTTTTCACC 58.816 45.455 0.00 0.00 37.37 4.02
1994 2041 2.601314 GCCACAAAAAGTCCGTTTTCAC 59.399 45.455 0.00 0.00 37.37 3.18
1995 2042 2.494073 AGCCACAAAAAGTCCGTTTTCA 59.506 40.909 0.00 0.00 37.37 2.69
1996 2043 3.159353 AGCCACAAAAAGTCCGTTTTC 57.841 42.857 0.00 0.00 37.37 2.29
1997 2044 3.603158 AAGCCACAAAAAGTCCGTTTT 57.397 38.095 0.00 0.00 40.26 2.43
1998 2045 4.098807 ACATAAGCCACAAAAAGTCCGTTT 59.901 37.500 0.00 0.00 0.00 3.60
1999 2046 3.634910 ACATAAGCCACAAAAAGTCCGTT 59.365 39.130 0.00 0.00 0.00 4.44
2000 2047 3.219281 ACATAAGCCACAAAAAGTCCGT 58.781 40.909 0.00 0.00 0.00 4.69
2001 2048 3.915437 ACATAAGCCACAAAAAGTCCG 57.085 42.857 0.00 0.00 0.00 4.79
2024 2071 8.454570 AATCAGGCATCAAAAATTGTCTTTTT 57.545 26.923 0.00 0.00 32.38 1.94
2025 2072 9.729281 ATAATCAGGCATCAAAAATTGTCTTTT 57.271 25.926 0.00 0.00 0.00 2.27
2028 2075 8.139989 GCTATAATCAGGCATCAAAAATTGTCT 58.860 33.333 0.00 0.00 0.00 3.41
2029 2076 8.139989 AGCTATAATCAGGCATCAAAAATTGTC 58.860 33.333 0.00 0.00 0.00 3.18
2030 2077 8.015185 AGCTATAATCAGGCATCAAAAATTGT 57.985 30.769 0.00 0.00 0.00 2.71
2034 2081 9.353431 TGAATAGCTATAATCAGGCATCAAAAA 57.647 29.630 6.68 0.00 0.00 1.94
2035 2082 8.786898 GTGAATAGCTATAATCAGGCATCAAAA 58.213 33.333 6.68 0.00 0.00 2.44
2036 2083 7.118245 CGTGAATAGCTATAATCAGGCATCAAA 59.882 37.037 6.68 0.00 0.00 2.69
2037 2084 6.591448 CGTGAATAGCTATAATCAGGCATCAA 59.409 38.462 6.68 0.00 0.00 2.57
2038 2085 6.071391 TCGTGAATAGCTATAATCAGGCATCA 60.071 38.462 17.54 8.43 30.28 3.07
2039 2086 6.333416 TCGTGAATAGCTATAATCAGGCATC 58.667 40.000 17.54 6.36 30.28 3.91
2040 2087 6.286240 TCGTGAATAGCTATAATCAGGCAT 57.714 37.500 17.54 0.00 30.28 4.40
2041 2088 5.336770 CCTCGTGAATAGCTATAATCAGGCA 60.337 44.000 17.54 9.69 30.28 4.75
2042 2089 5.105752 CCTCGTGAATAGCTATAATCAGGC 58.894 45.833 17.54 5.19 30.28 4.85
2043 2090 5.105752 GCCTCGTGAATAGCTATAATCAGG 58.894 45.833 16.72 16.72 31.05 3.86
2044 2091 5.714047 TGCCTCGTGAATAGCTATAATCAG 58.286 41.667 6.68 3.27 0.00 2.90
2045 2092 5.722021 TGCCTCGTGAATAGCTATAATCA 57.278 39.130 6.68 5.31 0.00 2.57
2046 2093 7.602517 AATTGCCTCGTGAATAGCTATAATC 57.397 36.000 6.68 2.44 0.00 1.75
2047 2094 7.986085 AAATTGCCTCGTGAATAGCTATAAT 57.014 32.000 6.68 0.00 0.00 1.28
2048 2095 7.282224 ACAAAATTGCCTCGTGAATAGCTATAA 59.718 33.333 6.68 0.00 0.00 0.98
2049 2096 6.765989 ACAAAATTGCCTCGTGAATAGCTATA 59.234 34.615 6.68 0.00 0.00 1.31
2050 2097 5.590259 ACAAAATTGCCTCGTGAATAGCTAT 59.410 36.000 0.00 0.00 0.00 2.97
2051 2098 4.941263 ACAAAATTGCCTCGTGAATAGCTA 59.059 37.500 0.00 0.00 0.00 3.32
2052 2099 3.758554 ACAAAATTGCCTCGTGAATAGCT 59.241 39.130 0.00 0.00 0.00 3.32
2053 2100 4.096732 ACAAAATTGCCTCGTGAATAGC 57.903 40.909 0.00 0.00 0.00 2.97
2054 2101 6.430451 GGATACAAAATTGCCTCGTGAATAG 58.570 40.000 0.00 0.00 0.00 1.73
2055 2102 5.298276 GGGATACAAAATTGCCTCGTGAATA 59.702 40.000 0.00 0.00 39.74 1.75
2056 2103 4.097892 GGGATACAAAATTGCCTCGTGAAT 59.902 41.667 0.00 0.00 39.74 2.57
2057 2104 3.442273 GGGATACAAAATTGCCTCGTGAA 59.558 43.478 0.00 0.00 39.74 3.18
2058 2105 3.013921 GGGATACAAAATTGCCTCGTGA 58.986 45.455 0.00 0.00 39.74 4.35
2059 2106 3.016736 AGGGATACAAAATTGCCTCGTG 58.983 45.455 0.00 0.00 39.74 4.35
2060 2107 3.366052 AGGGATACAAAATTGCCTCGT 57.634 42.857 0.00 0.00 39.74 4.18
2061 2108 4.718940 AAAGGGATACAAAATTGCCTCG 57.281 40.909 0.00 0.00 39.74 4.63
2062 2109 8.691797 TGTATAAAAGGGATACAAAATTGCCTC 58.308 33.333 0.00 0.00 36.95 4.70
2063 2110 8.602472 TGTATAAAAGGGATACAAAATTGCCT 57.398 30.769 0.00 0.00 36.95 4.75
2064 2111 9.260002 CATGTATAAAAGGGATACAAAATTGCC 57.740 33.333 0.01 0.00 41.76 4.52
2065 2112 8.764287 GCATGTATAAAAGGGATACAAAATTGC 58.236 33.333 0.00 2.50 41.76 3.56
2066 2113 9.260002 GGCATGTATAAAAGGGATACAAAATTG 57.740 33.333 0.00 0.00 41.76 2.32
2067 2114 8.986991 TGGCATGTATAAAAGGGATACAAAATT 58.013 29.630 0.00 0.00 41.76 1.82
2068 2115 8.421002 GTGGCATGTATAAAAGGGATACAAAAT 58.579 33.333 0.00 0.00 41.76 1.82
2069 2116 7.397476 TGTGGCATGTATAAAAGGGATACAAAA 59.603 33.333 0.00 0.00 41.76 2.44
2070 2117 6.892456 TGTGGCATGTATAAAAGGGATACAAA 59.108 34.615 0.00 0.00 41.76 2.83
2071 2118 6.427441 TGTGGCATGTATAAAAGGGATACAA 58.573 36.000 0.00 0.00 41.76 2.41
2072 2119 6.007485 TGTGGCATGTATAAAAGGGATACA 57.993 37.500 0.00 0.00 42.43 2.29
2073 2120 6.952773 TTGTGGCATGTATAAAAGGGATAC 57.047 37.500 0.00 0.00 0.00 2.24
2074 2121 7.962995 TTTTGTGGCATGTATAAAAGGGATA 57.037 32.000 0.00 0.00 0.00 2.59
2075 2122 6.865834 TTTTGTGGCATGTATAAAAGGGAT 57.134 33.333 0.00 0.00 0.00 3.85
2076 2123 6.865834 ATTTTGTGGCATGTATAAAAGGGA 57.134 33.333 0.00 0.00 0.00 4.20
2077 2124 8.203485 ACATATTTTGTGGCATGTATAAAAGGG 58.797 33.333 0.00 6.77 37.11 3.95
2078 2125 9.248291 GACATATTTTGTGGCATGTATAAAAGG 57.752 33.333 0.00 6.99 39.18 3.11
2079 2126 9.248291 GGACATATTTTGTGGCATGTATAAAAG 57.752 33.333 0.00 3.48 39.18 2.27
2080 2127 8.976353 AGGACATATTTTGTGGCATGTATAAAA 58.024 29.630 0.00 2.25 39.18 1.52
2081 2128 8.532186 AGGACATATTTTGTGGCATGTATAAA 57.468 30.769 0.00 0.00 39.18 1.40
2082 2129 9.806448 ATAGGACATATTTTGTGGCATGTATAA 57.194 29.630 0.00 0.00 39.18 0.98
2083 2130 9.806448 AATAGGACATATTTTGTGGCATGTATA 57.194 29.630 0.00 0.00 39.18 1.47
2084 2131 8.710749 AATAGGACATATTTTGTGGCATGTAT 57.289 30.769 0.00 0.00 39.18 2.29
2085 2132 7.998383 AGAATAGGACATATTTTGTGGCATGTA 59.002 33.333 0.00 0.00 39.18 2.29
2086 2133 6.835488 AGAATAGGACATATTTTGTGGCATGT 59.165 34.615 0.00 0.00 39.18 3.21
2087 2134 7.281040 AGAATAGGACATATTTTGTGGCATG 57.719 36.000 0.00 0.00 39.18 4.06
2088 2135 7.902920 AAGAATAGGACATATTTTGTGGCAT 57.097 32.000 0.00 0.00 39.18 4.40
2089 2136 7.716799 AAAGAATAGGACATATTTTGTGGCA 57.283 32.000 0.00 0.00 39.18 4.92
2100 2147 8.850156 GTGGCATGTATAAAAAGAATAGGACAT 58.150 33.333 0.00 0.00 0.00 3.06
2101 2148 7.831690 TGTGGCATGTATAAAAAGAATAGGACA 59.168 33.333 0.00 0.00 0.00 4.02
2102 2149 8.220755 TGTGGCATGTATAAAAAGAATAGGAC 57.779 34.615 0.00 0.00 0.00 3.85
2103 2150 8.815565 TTGTGGCATGTATAAAAAGAATAGGA 57.184 30.769 0.00 0.00 0.00 2.94
2104 2151 9.868277 TTTTGTGGCATGTATAAAAAGAATAGG 57.132 29.630 0.00 0.00 0.00 2.57
2111 2158 9.593134 GGACATATTTTGTGGCATGTATAAAAA 57.407 29.630 9.48 6.12 39.18 1.94
2112 2159 8.976353 AGGACATATTTTGTGGCATGTATAAAA 58.024 29.630 0.00 2.25 39.18 1.52
2113 2160 8.532186 AGGACATATTTTGTGGCATGTATAAA 57.468 30.769 0.00 0.00 39.18 1.40
2114 2161 9.806448 ATAGGACATATTTTGTGGCATGTATAA 57.194 29.630 0.00 0.00 39.18 0.98
2115 2162 9.806448 AATAGGACATATTTTGTGGCATGTATA 57.194 29.630 0.00 0.00 39.18 1.47
2116 2163 8.710749 AATAGGACATATTTTGTGGCATGTAT 57.289 30.769 0.00 0.00 39.18 2.29
2117 2164 8.532186 AAATAGGACATATTTTGTGGCATGTA 57.468 30.769 0.00 0.00 40.48 2.29
2118 2165 7.123997 TGAAATAGGACATATTTTGTGGCATGT 59.876 33.333 6.55 0.00 42.84 3.21
2119 2166 7.436080 GTGAAATAGGACATATTTTGTGGCATG 59.564 37.037 6.55 0.00 42.84 4.06
2120 2167 7.417797 GGTGAAATAGGACATATTTTGTGGCAT 60.418 37.037 6.55 0.00 42.84 4.40
2121 2168 6.127479 GGTGAAATAGGACATATTTTGTGGCA 60.127 38.462 6.55 0.00 42.84 4.92
2122 2169 6.273071 GGTGAAATAGGACATATTTTGTGGC 58.727 40.000 6.55 0.00 42.84 5.01
2123 2170 6.317642 TCGGTGAAATAGGACATATTTTGTGG 59.682 38.462 6.55 0.00 42.84 4.17
2124 2171 7.315247 TCGGTGAAATAGGACATATTTTGTG 57.685 36.000 6.55 0.00 42.84 3.33
2125 2172 7.931578 TTCGGTGAAATAGGACATATTTTGT 57.068 32.000 6.55 0.00 42.84 2.83
2126 2173 8.458843 AGTTTCGGTGAAATAGGACATATTTTG 58.541 33.333 6.55 0.00 42.84 2.44
2127 2174 8.575649 AGTTTCGGTGAAATAGGACATATTTT 57.424 30.769 6.55 0.00 42.84 1.82
2128 2175 8.575649 AAGTTTCGGTGAAATAGGACATATTT 57.424 30.769 4.83 4.83 44.96 1.40
2129 2176 8.458843 CAAAGTTTCGGTGAAATAGGACATATT 58.541 33.333 0.00 0.00 33.97 1.28
2130 2177 7.610305 ACAAAGTTTCGGTGAAATAGGACATAT 59.390 33.333 0.00 0.00 33.97 1.78
2131 2178 6.938030 ACAAAGTTTCGGTGAAATAGGACATA 59.062 34.615 0.00 0.00 33.97 2.29
2132 2179 5.768164 ACAAAGTTTCGGTGAAATAGGACAT 59.232 36.000 0.00 0.00 33.97 3.06
2133 2180 5.008217 CACAAAGTTTCGGTGAAATAGGACA 59.992 40.000 0.82 0.00 33.97 4.02
2134 2181 5.008316 ACACAAAGTTTCGGTGAAATAGGAC 59.992 40.000 11.80 0.00 33.97 3.85
2135 2182 5.008217 CACACAAAGTTTCGGTGAAATAGGA 59.992 40.000 11.80 0.00 33.97 2.94
2136 2183 5.212194 CACACAAAGTTTCGGTGAAATAGG 58.788 41.667 11.80 0.00 33.97 2.57
2137 2184 4.675114 GCACACAAAGTTTCGGTGAAATAG 59.325 41.667 16.50 3.29 33.97 1.73
2138 2185 4.602995 GCACACAAAGTTTCGGTGAAATA 58.397 39.130 16.50 0.00 33.97 1.40
2139 2186 3.443976 GCACACAAAGTTTCGGTGAAAT 58.556 40.909 16.50 0.00 33.97 2.17
2140 2187 2.729467 CGCACACAAAGTTTCGGTGAAA 60.729 45.455 16.50 0.00 36.42 2.69
2141 2188 1.202087 CGCACACAAAGTTTCGGTGAA 60.202 47.619 16.50 0.00 36.42 3.18
2142 2189 0.375454 CGCACACAAAGTTTCGGTGA 59.625 50.000 16.50 0.00 36.42 4.02
2143 2190 0.591236 CCGCACACAAAGTTTCGGTG 60.591 55.000 10.44 10.44 38.36 4.94
2144 2191 0.745128 TCCGCACACAAAGTTTCGGT 60.745 50.000 11.20 0.00 41.75 4.69
2145 2192 0.316689 GTCCGCACACAAAGTTTCGG 60.317 55.000 6.39 6.39 42.16 4.30
2146 2193 0.375454 TGTCCGCACACAAAGTTTCG 59.625 50.000 0.00 0.00 0.00 3.46
2147 2194 2.774439 ATGTCCGCACACAAAGTTTC 57.226 45.000 0.00 0.00 34.48 2.78
2148 2195 3.818210 TCATATGTCCGCACACAAAGTTT 59.182 39.130 1.90 0.00 34.48 2.66
2149 2196 3.407698 TCATATGTCCGCACACAAAGTT 58.592 40.909 1.90 0.00 34.48 2.66
2150 2197 3.052455 TCATATGTCCGCACACAAAGT 57.948 42.857 1.90 0.00 34.48 2.66
2151 2198 3.374988 ACATCATATGTCCGCACACAAAG 59.625 43.478 1.90 0.00 39.92 2.77
2152 2199 3.342719 ACATCATATGTCCGCACACAAA 58.657 40.909 1.90 0.00 39.92 2.83
2153 2200 2.984562 ACATCATATGTCCGCACACAA 58.015 42.857 1.90 0.00 39.92 3.33
2154 2201 2.689553 ACATCATATGTCCGCACACA 57.310 45.000 1.90 0.00 39.92 3.72
2163 2210 7.004783 CGTGTGTACATACGGACATCATATGT 61.005 42.308 30.54 10.94 41.29 2.29
2164 2211 5.342259 CGTGTGTACATACGGACATCATATG 59.658 44.000 30.54 0.00 41.29 1.78
2165 2212 5.458015 CGTGTGTACATACGGACATCATAT 58.542 41.667 30.54 0.00 41.29 1.78
2166 2213 4.851010 CGTGTGTACATACGGACATCATA 58.149 43.478 30.54 0.00 41.29 2.15
2167 2214 3.702330 CGTGTGTACATACGGACATCAT 58.298 45.455 30.54 0.00 41.29 2.45
2168 2215 3.139603 CGTGTGTACATACGGACATCA 57.860 47.619 30.54 5.19 41.29 3.07
2243 2290 8.501070 GGCTCCTAGGTATAGATACACCTATTA 58.499 40.741 9.08 0.00 44.45 0.98
2244 2291 7.036059 TGGCTCCTAGGTATAGATACACCTATT 60.036 40.741 9.08 0.00 44.45 1.73
2245 2292 6.450681 TGGCTCCTAGGTATAGATACACCTAT 59.549 42.308 9.08 0.00 44.45 2.57
2246 2293 5.794289 TGGCTCCTAGGTATAGATACACCTA 59.206 44.000 9.08 0.00 43.48 3.08
2247 2294 4.606697 TGGCTCCTAGGTATAGATACACCT 59.393 45.833 9.08 0.00 46.88 4.00
2248 2295 4.931914 TGGCTCCTAGGTATAGATACACC 58.068 47.826 9.08 0.00 34.98 4.16
2249 2296 6.912951 TTTGGCTCCTAGGTATAGATACAC 57.087 41.667 9.08 0.00 34.98 2.90
2250 2297 7.527196 GCATTTTGGCTCCTAGGTATAGATACA 60.527 40.741 9.08 0.00 34.98 2.29
2251 2298 6.819146 GCATTTTGGCTCCTAGGTATAGATAC 59.181 42.308 9.08 0.00 0.00 2.24
2252 2299 6.070194 GGCATTTTGGCTCCTAGGTATAGATA 60.070 42.308 9.08 0.00 40.14 1.98
2253 2300 5.280727 GGCATTTTGGCTCCTAGGTATAGAT 60.281 44.000 9.08 0.00 40.14 1.98
2254 2301 4.041691 GGCATTTTGGCTCCTAGGTATAGA 59.958 45.833 9.08 0.00 40.14 1.98
2255 2302 4.202461 TGGCATTTTGGCTCCTAGGTATAG 60.202 45.833 9.08 0.00 44.10 1.31
2256 2303 3.719479 TGGCATTTTGGCTCCTAGGTATA 59.281 43.478 9.08 0.00 44.10 1.47
2257 2304 2.513738 TGGCATTTTGGCTCCTAGGTAT 59.486 45.455 9.08 0.00 44.10 2.73
2258 2305 1.919654 TGGCATTTTGGCTCCTAGGTA 59.080 47.619 9.08 0.00 44.10 3.08
2259 2306 0.704076 TGGCATTTTGGCTCCTAGGT 59.296 50.000 9.08 0.00 44.10 3.08
2260 2307 1.106285 GTGGCATTTTGGCTCCTAGG 58.894 55.000 0.82 0.82 44.10 3.02
2261 2308 2.019984 GAGTGGCATTTTGGCTCCTAG 58.980 52.381 0.00 0.00 44.10 3.02
2262 2309 1.635487 AGAGTGGCATTTTGGCTCCTA 59.365 47.619 0.00 0.00 44.10 2.94
2263 2310 0.407139 AGAGTGGCATTTTGGCTCCT 59.593 50.000 0.00 0.00 44.10 3.69
2264 2311 0.813821 GAGAGTGGCATTTTGGCTCC 59.186 55.000 0.00 0.00 44.10 4.70
2265 2312 0.449388 CGAGAGTGGCATTTTGGCTC 59.551 55.000 0.00 0.00 44.10 4.70
2266 2313 0.250901 ACGAGAGTGGCATTTTGGCT 60.251 50.000 0.00 0.00 46.97 4.75
2267 2314 2.257353 ACGAGAGTGGCATTTTGGC 58.743 52.632 0.00 0.00 46.97 4.52
2272 2319 8.395633 GTTATTAAACATAACGAGAGTGGCATT 58.604 33.333 0.00 0.00 39.01 3.56
2273 2320 7.916552 GTTATTAAACATAACGAGAGTGGCAT 58.083 34.615 0.00 0.00 39.01 4.40
2274 2321 7.298507 GTTATTAAACATAACGAGAGTGGCA 57.701 36.000 0.00 0.00 39.01 4.92
2287 2334 9.143631 GACCACTTACAGTACGTTATTAAACAT 57.856 33.333 0.00 0.00 35.16 2.71
2288 2335 7.325821 CGACCACTTACAGTACGTTATTAAACA 59.674 37.037 0.00 0.00 35.16 2.83
2289 2336 7.537306 TCGACCACTTACAGTACGTTATTAAAC 59.463 37.037 0.00 0.00 0.00 2.01
2290 2337 7.537306 GTCGACCACTTACAGTACGTTATTAAA 59.463 37.037 3.51 0.00 0.00 1.52
2291 2338 7.021196 GTCGACCACTTACAGTACGTTATTAA 58.979 38.462 3.51 0.00 0.00 1.40
2292 2339 6.148645 TGTCGACCACTTACAGTACGTTATTA 59.851 38.462 14.12 0.00 0.00 0.98
2293 2340 5.048782 TGTCGACCACTTACAGTACGTTATT 60.049 40.000 14.12 0.00 0.00 1.40
2336 2384 5.590530 AGATTTGCACACTAGAGACTAGG 57.409 43.478 0.00 2.92 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.