Multiple sequence alignment - TraesCS6B01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G296900 chr6B 100.000 5266 0 0 1 5266 532904528 532899263 0.000000e+00 9725.0
1 TraesCS6B01G296900 chr6A 88.348 3141 160 74 201 3175 496017900 496014800 0.000000e+00 3583.0
2 TraesCS6B01G296900 chr6A 87.531 1604 98 44 3667 5233 496011295 496009757 0.000000e+00 1760.0
3 TraesCS6B01G296900 chr6A 83.544 158 14 6 3252 3408 496011914 496011768 2.560000e-28 137.0
4 TraesCS6B01G296900 chr6A 79.286 140 22 6 35 170 362702797 362702933 2.020000e-14 91.6
5 TraesCS6B01G296900 chr6A 95.652 46 2 0 3194 3239 496014799 496014754 2.030000e-09 75.0
6 TraesCS6B01G296900 chr6D 89.591 2882 123 61 360 3129 347432745 347435561 0.000000e+00 3496.0
7 TraesCS6B01G296900 chr6D 90.308 1785 80 34 3433 5183 347435854 347437579 0.000000e+00 2252.0
8 TraesCS6B01G296900 chr6D 94.366 142 8 0 3113 3254 347435576 347435717 8.880000e-53 219.0
9 TraesCS6B01G296900 chr6D 84.507 142 20 2 1 142 347407495 347407634 7.110000e-29 139.0
10 TraesCS6B01G296900 chr6D 92.941 85 3 2 5182 5266 347439904 347439985 2.580000e-23 121.0
11 TraesCS6B01G296900 chr6D 95.238 63 3 0 305 367 347407997 347408059 3.360000e-17 100.0
12 TraesCS6B01G296900 chr6D 84.259 108 10 4 3252 3359 347435746 347435846 1.210000e-16 99.0
13 TraesCS6B01G296900 chr2A 91.237 194 17 0 1897 2090 687050238 687050431 1.120000e-66 265.0
14 TraesCS6B01G296900 chr2A 88.268 179 17 4 1246 1423 687049230 687049405 1.490000e-50 211.0
15 TraesCS6B01G296900 chr2B 90.576 191 17 1 1897 2087 653017812 653018001 8.750000e-63 252.0
16 TraesCS6B01G296900 chr2B 89.759 166 17 0 1238 1403 653016782 653016947 4.130000e-51 213.0
17 TraesCS6B01G296900 chr2D 90.052 191 18 1 1897 2087 546209779 546209968 4.070000e-61 246.0
18 TraesCS6B01G296900 chr2D 83.212 137 17 5 1932 2065 506941875 506941742 2.580000e-23 121.0
19 TraesCS6B01G296900 chr4A 91.034 145 11 2 1922 2065 705512238 705512095 1.500000e-45 195.0
20 TraesCS6B01G296900 chr7D 90.345 145 12 2 1922 2065 22588424 22588281 6.960000e-44 189.0
21 TraesCS6B01G296900 chr7A 89.655 145 13 2 1922 2065 22939732 22939589 3.240000e-42 183.0
22 TraesCS6B01G296900 chr1A 82.781 151 21 4 37 183 284911183 284911332 4.280000e-26 130.0
23 TraesCS6B01G296900 chr1B 83.582 134 22 0 1266 1399 146428112 146427979 5.540000e-25 126.0
24 TraesCS6B01G296900 chr1B 78.676 136 22 6 38 170 323293580 323293711 3.380000e-12 84.2
25 TraesCS6B01G296900 chr3D 79.221 154 24 6 37 185 179182808 179182658 3.360000e-17 100.0
26 TraesCS6B01G296900 chr3D 78.481 158 22 10 36 182 319855072 319854916 5.620000e-15 93.5
27 TraesCS6B01G296900 chr3D 77.027 148 24 8 41 182 113022254 113022111 5.650000e-10 76.8
28 TraesCS6B01G296900 chr1D 78.947 133 21 6 41 170 223742822 223742950 3.380000e-12 84.2
29 TraesCS6B01G296900 chr3B 77.444 133 24 6 35 163 663057864 663057994 2.030000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G296900 chr6B 532899263 532904528 5265 True 9725.00 9725 100.00000 1 5266 1 chr6B.!!$R1 5265
1 TraesCS6B01G296900 chr6A 496009757 496017900 8143 True 1388.75 3583 88.76875 201 5233 4 chr6A.!!$R1 5032
2 TraesCS6B01G296900 chr6D 347432745 347439985 7240 False 1237.40 3496 90.29300 360 5266 5 chr6D.!!$F2 4906
3 TraesCS6B01G296900 chr2A 687049230 687050431 1201 False 238.00 265 89.75250 1246 2090 2 chr2A.!!$F1 844
4 TraesCS6B01G296900 chr2B 653016782 653018001 1219 False 232.50 252 90.16750 1238 2087 2 chr2B.!!$F1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.108041 TTTTAGATGCCCGTCCGGTC 60.108 55.0 0.00 0.00 0.00 4.79 F
1144 1241 0.035915 GGTTCTTGGCTCCTCACTCC 60.036 60.0 0.00 0.00 0.00 3.85 F
1908 2572 0.676782 GGCTTTGTGCAGTCGGGTAT 60.677 55.0 0.00 0.00 45.15 2.73 F
2499 3197 1.042229 AATGGCGCCATATGCATTGT 58.958 45.0 40.54 20.91 41.33 2.71 F
3926 7819 0.324285 CTCCTCAGCTTGGAGCAACT 59.676 55.0 16.80 0.00 45.56 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1914 0.593128 CAAGGAGCGTCTGTTTTGGG 59.407 55.000 0.00 0.00 0.00 4.12 R
2612 3310 0.039035 CCCGGGTTCCCAATCTGAAA 59.961 55.000 14.18 0.00 0.00 2.69 R
2936 3673 0.762082 TGAAAATGGTGGGGCTTGCA 60.762 50.000 0.00 0.00 0.00 4.08 R
4256 8155 1.146263 GCTGCCGGCCTAGTACATT 59.854 57.895 26.77 0.00 34.27 2.71 R
5093 9032 1.298993 CACAGTGCAGATCCAGCCT 59.701 57.895 5.41 0.41 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.517875 ATCCATGCCCGCTTGCTC 60.518 61.111 0.00 0.00 0.00 4.26
18 19 4.802051 TCCATGCCCGCTTGCTCC 62.802 66.667 0.00 0.00 0.00 4.70
54 55 3.797353 GGCGAGGATGGGGAGCAA 61.797 66.667 0.00 0.00 0.00 3.91
55 56 2.203126 GCGAGGATGGGGAGCAAG 60.203 66.667 0.00 0.00 0.00 4.01
56 57 2.507944 CGAGGATGGGGAGCAAGG 59.492 66.667 0.00 0.00 0.00 3.61
57 58 2.922234 GAGGATGGGGAGCAAGGG 59.078 66.667 0.00 0.00 0.00 3.95
58 59 2.003548 GAGGATGGGGAGCAAGGGT 61.004 63.158 0.00 0.00 0.00 4.34
59 60 2.276309 GAGGATGGGGAGCAAGGGTG 62.276 65.000 0.00 0.00 0.00 4.61
60 61 2.276740 GATGGGGAGCAAGGGTGG 59.723 66.667 0.00 0.00 0.00 4.61
61 62 4.066139 ATGGGGAGCAAGGGTGGC 62.066 66.667 0.00 0.00 0.00 5.01
79 80 4.344865 GGACGGCAAGGGCTTGGA 62.345 66.667 0.00 0.00 40.74 3.53
80 81 3.056328 GACGGCAAGGGCTTGGAC 61.056 66.667 0.00 0.00 40.74 4.02
81 82 3.842925 GACGGCAAGGGCTTGGACA 62.843 63.158 0.00 0.00 40.74 4.02
82 83 3.365265 CGGCAAGGGCTTGGACAC 61.365 66.667 0.00 0.00 40.74 3.67
83 84 3.365265 GGCAAGGGCTTGGACACG 61.365 66.667 0.00 0.00 40.74 4.49
84 85 2.281484 GCAAGGGCTTGGACACGA 60.281 61.111 0.00 0.00 40.74 4.35
85 86 1.896660 GCAAGGGCTTGGACACGAA 60.897 57.895 0.00 0.00 40.74 3.85
86 87 1.452145 GCAAGGGCTTGGACACGAAA 61.452 55.000 0.00 0.00 40.74 3.46
87 88 1.028905 CAAGGGCTTGGACACGAAAA 58.971 50.000 0.00 0.00 36.95 2.29
88 89 1.613437 CAAGGGCTTGGACACGAAAAT 59.387 47.619 0.00 0.00 36.95 1.82
89 90 2.817258 CAAGGGCTTGGACACGAAAATA 59.183 45.455 0.00 0.00 36.95 1.40
90 91 2.711542 AGGGCTTGGACACGAAAATAG 58.288 47.619 0.00 0.00 0.00 1.73
91 92 1.743394 GGGCTTGGACACGAAAATAGG 59.257 52.381 0.00 0.00 0.00 2.57
92 93 2.433436 GGCTTGGACACGAAAATAGGT 58.567 47.619 0.00 0.00 0.00 3.08
93 94 2.161609 GGCTTGGACACGAAAATAGGTG 59.838 50.000 0.00 0.00 39.98 4.00
94 95 2.161609 GCTTGGACACGAAAATAGGTGG 59.838 50.000 0.00 0.00 38.46 4.61
95 96 3.670625 CTTGGACACGAAAATAGGTGGA 58.329 45.455 0.00 0.00 38.46 4.02
96 97 3.992943 TGGACACGAAAATAGGTGGAT 57.007 42.857 0.00 0.00 38.46 3.41
97 98 3.605634 TGGACACGAAAATAGGTGGATG 58.394 45.455 0.00 0.00 38.46 3.51
98 99 3.262151 TGGACACGAAAATAGGTGGATGA 59.738 43.478 0.00 0.00 38.46 2.92
99 100 4.258543 GGACACGAAAATAGGTGGATGAA 58.741 43.478 0.00 0.00 38.46 2.57
100 101 4.332819 GGACACGAAAATAGGTGGATGAAG 59.667 45.833 0.00 0.00 38.46 3.02
101 102 4.261801 ACACGAAAATAGGTGGATGAAGG 58.738 43.478 0.00 0.00 38.46 3.46
102 103 3.065371 CACGAAAATAGGTGGATGAAGGC 59.935 47.826 0.00 0.00 0.00 4.35
103 104 2.287915 CGAAAATAGGTGGATGAAGGCG 59.712 50.000 0.00 0.00 0.00 5.52
104 105 2.348411 AAATAGGTGGATGAAGGCGG 57.652 50.000 0.00 0.00 0.00 6.13
105 106 0.474184 AATAGGTGGATGAAGGCGGG 59.526 55.000 0.00 0.00 0.00 6.13
106 107 0.399949 ATAGGTGGATGAAGGCGGGA 60.400 55.000 0.00 0.00 0.00 5.14
107 108 1.048724 TAGGTGGATGAAGGCGGGAG 61.049 60.000 0.00 0.00 0.00 4.30
108 109 2.367202 GGTGGATGAAGGCGGGAGA 61.367 63.158 0.00 0.00 0.00 3.71
109 110 1.144936 GTGGATGAAGGCGGGAGAG 59.855 63.158 0.00 0.00 0.00 3.20
110 111 1.001631 TGGATGAAGGCGGGAGAGA 59.998 57.895 0.00 0.00 0.00 3.10
111 112 1.045350 TGGATGAAGGCGGGAGAGAG 61.045 60.000 0.00 0.00 0.00 3.20
112 113 1.745264 GATGAAGGCGGGAGAGAGG 59.255 63.158 0.00 0.00 0.00 3.69
113 114 0.757188 GATGAAGGCGGGAGAGAGGA 60.757 60.000 0.00 0.00 0.00 3.71
114 115 0.758685 ATGAAGGCGGGAGAGAGGAG 60.759 60.000 0.00 0.00 0.00 3.69
115 116 2.042435 AAGGCGGGAGAGAGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
116 117 3.687828 AAGGCGGGAGAGAGGAGGG 62.688 68.421 0.00 0.00 0.00 4.30
117 118 4.467107 GGCGGGAGAGAGGAGGGT 62.467 72.222 0.00 0.00 0.00 4.34
118 119 2.364448 GCGGGAGAGAGGAGGGTT 60.364 66.667 0.00 0.00 0.00 4.11
119 120 1.990614 GCGGGAGAGAGGAGGGTTT 60.991 63.158 0.00 0.00 0.00 3.27
120 121 0.686769 GCGGGAGAGAGGAGGGTTTA 60.687 60.000 0.00 0.00 0.00 2.01
121 122 1.404843 CGGGAGAGAGGAGGGTTTAG 58.595 60.000 0.00 0.00 0.00 1.85
122 123 1.342175 CGGGAGAGAGGAGGGTTTAGT 60.342 57.143 0.00 0.00 0.00 2.24
123 124 2.112190 GGGAGAGAGGAGGGTTTAGTG 58.888 57.143 0.00 0.00 0.00 2.74
124 125 2.292323 GGGAGAGAGGAGGGTTTAGTGA 60.292 54.545 0.00 0.00 0.00 3.41
125 126 3.442076 GGAGAGAGGAGGGTTTAGTGAA 58.558 50.000 0.00 0.00 0.00 3.18
126 127 4.034410 GGAGAGAGGAGGGTTTAGTGAAT 58.966 47.826 0.00 0.00 0.00 2.57
127 128 4.471747 GGAGAGAGGAGGGTTTAGTGAATT 59.528 45.833 0.00 0.00 0.00 2.17
128 129 5.045505 GGAGAGAGGAGGGTTTAGTGAATTT 60.046 44.000 0.00 0.00 0.00 1.82
129 130 6.455690 AGAGAGGAGGGTTTAGTGAATTTT 57.544 37.500 0.00 0.00 0.00 1.82
130 131 7.311109 GGAGAGAGGAGGGTTTAGTGAATTTTA 60.311 40.741 0.00 0.00 0.00 1.52
131 132 8.164057 AGAGAGGAGGGTTTAGTGAATTTTAT 57.836 34.615 0.00 0.00 0.00 1.40
132 133 8.049721 AGAGAGGAGGGTTTAGTGAATTTTATG 58.950 37.037 0.00 0.00 0.00 1.90
133 134 6.603599 AGAGGAGGGTTTAGTGAATTTTATGC 59.396 38.462 0.00 0.00 0.00 3.14
134 135 6.252995 AGGAGGGTTTAGTGAATTTTATGCA 58.747 36.000 0.00 0.00 0.00 3.96
135 136 6.723977 AGGAGGGTTTAGTGAATTTTATGCAA 59.276 34.615 0.00 0.00 0.00 4.08
136 137 7.400052 AGGAGGGTTTAGTGAATTTTATGCAAT 59.600 33.333 0.00 0.00 0.00 3.56
137 138 8.040727 GGAGGGTTTAGTGAATTTTATGCAATT 58.959 33.333 0.00 0.00 0.00 2.32
138 139 9.435688 GAGGGTTTAGTGAATTTTATGCAATTT 57.564 29.630 0.00 0.00 0.00 1.82
145 146 8.721019 AGTGAATTTTATGCAATTTATGTGGG 57.279 30.769 0.00 0.00 0.00 4.61
146 147 7.769970 AGTGAATTTTATGCAATTTATGTGGGG 59.230 33.333 0.00 0.00 0.00 4.96
147 148 7.012232 GTGAATTTTATGCAATTTATGTGGGGG 59.988 37.037 0.00 0.00 0.00 5.40
163 164 4.280019 GGGTTGGCCTGTCGGGTT 62.280 66.667 3.32 0.00 37.43 4.11
164 165 2.671963 GGTTGGCCTGTCGGGTTC 60.672 66.667 3.32 0.00 37.43 3.62
165 166 2.430367 GTTGGCCTGTCGGGTTCT 59.570 61.111 3.32 0.00 37.43 3.01
166 167 1.675219 GTTGGCCTGTCGGGTTCTA 59.325 57.895 3.32 0.00 37.43 2.10
167 168 0.672711 GTTGGCCTGTCGGGTTCTAC 60.673 60.000 3.32 0.00 37.43 2.59
168 169 2.162338 TTGGCCTGTCGGGTTCTACG 62.162 60.000 3.32 0.00 37.43 3.51
169 170 2.643232 GGCCTGTCGGGTTCTACGT 61.643 63.158 0.00 0.00 37.43 3.57
170 171 1.315257 GGCCTGTCGGGTTCTACGTA 61.315 60.000 0.00 0.00 37.43 3.57
171 172 0.527565 GCCTGTCGGGTTCTACGTAA 59.472 55.000 0.00 0.00 37.43 3.18
172 173 1.135721 GCCTGTCGGGTTCTACGTAAT 59.864 52.381 0.00 0.00 37.43 1.89
173 174 2.805845 CCTGTCGGGTTCTACGTAATG 58.194 52.381 0.00 0.00 0.00 1.90
174 175 2.480759 CCTGTCGGGTTCTACGTAATGG 60.481 54.545 0.00 0.00 0.00 3.16
175 176 2.424601 CTGTCGGGTTCTACGTAATGGA 59.575 50.000 0.00 0.00 0.00 3.41
176 177 2.164219 TGTCGGGTTCTACGTAATGGAC 59.836 50.000 0.00 0.00 0.00 4.02
184 185 3.320078 CGTAATGGACGCGCCGAG 61.320 66.667 5.73 0.00 46.27 4.63
185 186 2.960129 GTAATGGACGCGCCGAGG 60.960 66.667 5.73 0.00 40.66 4.63
186 187 4.884257 TAATGGACGCGCCGAGGC 62.884 66.667 5.73 3.59 40.66 4.70
195 196 3.933722 CGCCGAGGCATGAGGGAT 61.934 66.667 15.03 0.00 42.06 3.85
196 197 2.281345 GCCGAGGCATGAGGGATG 60.281 66.667 9.58 0.00 41.49 3.51
207 208 3.011517 AGGGATGCCGGTCAGCTT 61.012 61.111 1.90 0.00 0.00 3.74
208 209 2.825836 GGGATGCCGGTCAGCTTG 60.826 66.667 1.90 0.00 0.00 4.01
209 210 2.825836 GGATGCCGGTCAGCTTGG 60.826 66.667 1.90 0.00 0.00 3.61
216 217 1.106944 CCGGTCAGCTTGGGTGTTTT 61.107 55.000 0.00 0.00 32.43 2.43
220 221 3.421844 GGTCAGCTTGGGTGTTTTAGAT 58.578 45.455 0.00 0.00 32.43 1.98
223 224 2.094545 CAGCTTGGGTGTTTTAGATGCC 60.095 50.000 0.00 0.00 0.00 4.40
228 229 1.092348 GGTGTTTTAGATGCCCGTCC 58.908 55.000 0.00 0.00 0.00 4.79
229 230 0.725117 GTGTTTTAGATGCCCGTCCG 59.275 55.000 0.00 0.00 0.00 4.79
231 232 0.392060 GTTTTAGATGCCCGTCCGGT 60.392 55.000 0.00 0.00 0.00 5.28
232 233 0.108041 TTTTAGATGCCCGTCCGGTC 60.108 55.000 0.00 0.00 0.00 4.79
237 238 0.108041 GATGCCCGTCCGGTCTTTTA 60.108 55.000 0.00 0.00 0.00 1.52
238 239 0.544697 ATGCCCGTCCGGTCTTTTAT 59.455 50.000 0.00 0.00 0.00 1.40
239 240 0.325602 TGCCCGTCCGGTCTTTTATT 59.674 50.000 0.00 0.00 0.00 1.40
243 244 3.439825 GCCCGTCCGGTCTTTTATTTTTA 59.560 43.478 0.00 0.00 0.00 1.52
245 246 5.633927 CCCGTCCGGTCTTTTATTTTTAAG 58.366 41.667 0.00 0.00 0.00 1.85
246 247 5.181811 CCCGTCCGGTCTTTTATTTTTAAGT 59.818 40.000 0.00 0.00 0.00 2.24
248 249 6.309436 CGTCCGGTCTTTTATTTTTAAGTCC 58.691 40.000 0.00 0.00 0.00 3.85
254 255 9.830294 CGGTCTTTTATTTTTAAGTCCGTAATT 57.170 29.630 10.78 0.00 43.35 1.40
287 289 2.629051 GGACGTTCCATAGAGGTTTGG 58.371 52.381 0.00 0.00 36.28 3.28
293 295 0.395724 CCATAGAGGTTTGGGGTGCC 60.396 60.000 0.00 0.00 0.00 5.01
298 300 4.607025 GGTTTGGGGTGCCGGGAA 62.607 66.667 2.18 0.00 0.00 3.97
310 312 0.811616 GCCGGGAAGTAGATGCACAG 60.812 60.000 2.18 0.00 0.00 3.66
312 314 1.754803 CCGGGAAGTAGATGCACAGTA 59.245 52.381 0.00 0.00 0.00 2.74
357 366 4.899502 AGAAGCAAGCACATAGTACTGTT 58.100 39.130 5.39 0.00 0.00 3.16
480 492 0.250513 ACGCACCCCAAATCTCTCTC 59.749 55.000 0.00 0.00 0.00 3.20
508 536 3.270027 TCTTCCCATGCAATAGTTGTCG 58.730 45.455 0.00 0.00 0.00 4.35
528 556 1.502190 CACTCGCTCGCTACAGTGA 59.498 57.895 0.00 0.00 38.90 3.41
549 591 1.154282 GCATCGCATCGCATCCATG 60.154 57.895 0.00 0.00 0.00 3.66
581 623 3.580731 CCCACGAGAAAAAGAGAGAGAC 58.419 50.000 0.00 0.00 0.00 3.36
584 626 3.672867 CACGAGAAAAAGAGAGAGACAGC 59.327 47.826 0.00 0.00 0.00 4.40
593 635 5.337578 AAGAGAGAGACAGCAGAAATACC 57.662 43.478 0.00 0.00 0.00 2.73
611 653 3.032609 AGTCGTCGTCGTCGTCGT 61.033 61.111 18.44 1.12 45.27 4.34
612 654 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
613 655 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
686 737 3.417167 TACTCCTCCTCCTCGCCCG 62.417 68.421 0.00 0.00 0.00 6.13
689 740 4.896829 CCTCCTCCTCGCCCGCTA 62.897 72.222 0.00 0.00 0.00 4.26
747 798 2.954684 GCCTCGTCCACATCCACCA 61.955 63.158 0.00 0.00 0.00 4.17
861 918 3.236816 CCAAGCAAAGCACATTAACGAG 58.763 45.455 0.00 0.00 0.00 4.18
927 1004 4.697756 CCGTGGGGAAGCAAGCGA 62.698 66.667 0.00 0.00 34.06 4.93
928 1005 3.121030 CGTGGGGAAGCAAGCGAG 61.121 66.667 0.00 0.00 0.00 5.03
929 1006 3.435186 GTGGGGAAGCAAGCGAGC 61.435 66.667 0.00 0.00 0.00 5.03
944 1021 4.711949 AGCGAGCACAGGGGCTTG 62.712 66.667 6.40 6.40 45.99 4.01
949 1026 3.688159 GCACAGGGGCTTGGCTTG 61.688 66.667 0.00 0.00 0.00 4.01
950 1027 3.688159 CACAGGGGCTTGGCTTGC 61.688 66.667 0.00 0.00 0.00 4.01
1144 1241 0.035915 GGTTCTTGGCTCCTCACTCC 60.036 60.000 0.00 0.00 0.00 3.85
1166 1263 3.462982 TCTTCTTTCTTGCTTGTGCGTA 58.537 40.909 0.00 0.00 43.34 4.42
1431 1532 2.975265 TACGTCCCCCGCTCTCTCA 61.975 63.158 0.00 0.00 41.42 3.27
1448 1550 4.118410 CTCTCACCCTTTCTTCATCATCG 58.882 47.826 0.00 0.00 0.00 3.84
1528 1671 2.163412 TGCATCCATTTGTTAACTCGCC 59.837 45.455 7.22 0.00 0.00 5.54
1636 1813 1.678101 GCAATCCCAACCAGTGCTATC 59.322 52.381 0.00 0.00 32.43 2.08
1637 1814 2.684927 GCAATCCCAACCAGTGCTATCT 60.685 50.000 0.00 0.00 32.43 1.98
1639 1816 3.567478 ATCCCAACCAGTGCTATCTTC 57.433 47.619 0.00 0.00 0.00 2.87
1640 1817 2.265367 TCCCAACCAGTGCTATCTTCA 58.735 47.619 0.00 0.00 0.00 3.02
1710 1911 4.471726 GCAGCGTGCTCATGTGCC 62.472 66.667 16.62 7.57 40.96 5.01
1711 1912 3.807538 CAGCGTGCTCATGTGCCC 61.808 66.667 16.62 4.71 0.00 5.36
1755 1956 2.058595 TTAGCAGCGTCCCTCCTCC 61.059 63.158 0.00 0.00 0.00 4.30
1760 1961 4.144703 GCGTCCCTCCTCCGAACC 62.145 72.222 0.00 0.00 0.00 3.62
1781 2000 3.868661 CCTTTTTGTTTTTCTCCGTTGGG 59.131 43.478 0.00 0.00 0.00 4.12
1840 2087 1.269517 TGCTCGCCATTGTTTTTGGAC 60.270 47.619 0.00 0.00 36.26 4.02
1841 2088 1.000274 GCTCGCCATTGTTTTTGGACT 60.000 47.619 0.00 0.00 36.26 3.85
1908 2572 0.676782 GGCTTTGTGCAGTCGGGTAT 60.677 55.000 0.00 0.00 45.15 2.73
1944 2608 3.090532 AAGGTGGATCCGGAGCCC 61.091 66.667 34.85 24.78 41.99 5.19
2200 2870 3.758931 GGGGGAACAACGGCATGC 61.759 66.667 9.90 9.90 0.00 4.06
2204 2874 2.569354 GGAACAACGGCATGCCCAA 61.569 57.895 30.79 0.00 0.00 4.12
2405 3081 3.446442 AACTGATTGGAAGACAGCCAT 57.554 42.857 0.00 0.00 34.90 4.40
2407 3083 2.022195 CTGATTGGAAGACAGCCATGG 58.978 52.381 7.63 7.63 34.90 3.66
2499 3197 1.042229 AATGGCGCCATATGCATTGT 58.958 45.000 40.54 20.91 41.33 2.71
2500 3198 1.908344 ATGGCGCCATATGCATTGTA 58.092 45.000 39.91 8.92 41.33 2.41
2501 3199 1.685148 TGGCGCCATATGCATTGTAA 58.315 45.000 29.03 0.00 41.33 2.41
2515 3213 6.908870 TGCATTGTAATATGATCTATCGCC 57.091 37.500 0.00 0.00 0.00 5.54
2607 3305 3.016736 TGCTTTCCGGGATCAGATTTTC 58.983 45.455 0.00 0.00 0.00 2.29
2608 3306 3.016736 GCTTTCCGGGATCAGATTTTCA 58.983 45.455 0.00 0.00 0.00 2.69
2609 3307 3.065925 GCTTTCCGGGATCAGATTTTCAG 59.934 47.826 0.00 0.00 0.00 3.02
2610 3308 4.517285 CTTTCCGGGATCAGATTTTCAGA 58.483 43.478 0.00 0.00 0.00 3.27
2611 3309 4.778213 TTCCGGGATCAGATTTTCAGAT 57.222 40.909 0.00 0.00 0.00 2.90
2612 3310 4.778213 TCCGGGATCAGATTTTCAGATT 57.222 40.909 0.00 0.00 0.00 2.40
2613 3311 5.116084 TCCGGGATCAGATTTTCAGATTT 57.884 39.130 0.00 0.00 0.00 2.17
2614 3312 5.509498 TCCGGGATCAGATTTTCAGATTTT 58.491 37.500 0.00 0.00 0.00 1.82
2615 3313 5.590259 TCCGGGATCAGATTTTCAGATTTTC 59.410 40.000 0.00 0.00 0.00 2.29
2858 3591 1.168714 GTTTCTGTTAGGGCCTGCAG 58.831 55.000 24.95 24.95 0.00 4.41
2996 3733 8.507249 GTGTTTCTAACTTTCTATCAGTGCAAT 58.493 33.333 0.00 0.00 0.00 3.56
3042 3779 4.942483 TCGGTGAACTTCTTGGTGTAAAAA 59.058 37.500 0.00 0.00 0.00 1.94
3064 3801 1.605058 TTCCACTCCTCTGCCGCTAC 61.605 60.000 0.00 0.00 0.00 3.58
3107 3844 4.705023 ACTGTTTCCTGCTTAGTTGTGTTT 59.295 37.500 0.00 0.00 0.00 2.83
3175 3943 2.727123 TTGCTTTCCTCTGTCACCAA 57.273 45.000 0.00 0.00 0.00 3.67
3188 3956 6.655003 CCTCTGTCACCAACTGTTATATTTGT 59.345 38.462 0.00 0.00 0.00 2.83
3226 3994 4.635765 TGGTTCCTTGATAATTTCGAGCAG 59.364 41.667 0.00 0.00 34.84 4.24
3250 4018 6.019801 AGTGCTATTCTTACGCGTAAATCTTG 60.020 38.462 29.58 18.71 0.00 3.02
3293 6888 0.407528 TGCCTCTCCTCTCTCACAGT 59.592 55.000 0.00 0.00 0.00 3.55
3295 6890 2.297701 GCCTCTCCTCTCTCACAGTAG 58.702 57.143 0.00 0.00 0.00 2.57
3331 6926 5.600908 TTGTAAAAGTAGCACGGATGAAC 57.399 39.130 0.00 0.00 0.00 3.18
3366 6961 9.986833 TGATAATTTAATGATGAAAGTGTGTCG 57.013 29.630 0.00 0.00 0.00 4.35
3369 6964 6.627395 TTTAATGATGAAAGTGTGTCGGTT 57.373 33.333 0.00 0.00 0.00 4.44
3402 6997 2.480759 GCTTAGGATTTACTCGGTCGCA 60.481 50.000 0.00 0.00 0.00 5.10
3404 6999 2.981859 AGGATTTACTCGGTCGCAAT 57.018 45.000 0.00 0.00 0.00 3.56
3405 7000 3.261981 AGGATTTACTCGGTCGCAATT 57.738 42.857 0.00 0.00 0.00 2.32
3406 7001 3.606687 AGGATTTACTCGGTCGCAATTT 58.393 40.909 0.00 0.00 0.00 1.82
3407 7002 4.761975 AGGATTTACTCGGTCGCAATTTA 58.238 39.130 0.00 0.00 0.00 1.40
3408 7003 5.180271 AGGATTTACTCGGTCGCAATTTAA 58.820 37.500 0.00 0.00 0.00 1.52
3409 7004 5.820947 AGGATTTACTCGGTCGCAATTTAAT 59.179 36.000 0.00 0.00 0.00 1.40
3410 7005 5.907391 GGATTTACTCGGTCGCAATTTAATG 59.093 40.000 0.00 0.00 0.00 1.90
3411 7006 6.238266 GGATTTACTCGGTCGCAATTTAATGA 60.238 38.462 0.00 0.00 0.00 2.57
3412 7007 6.671614 TTTACTCGGTCGCAATTTAATGAT 57.328 33.333 0.00 0.00 0.00 2.45
3413 7008 4.536364 ACTCGGTCGCAATTTAATGATG 57.464 40.909 0.00 0.00 0.00 3.07
3414 7009 4.188462 ACTCGGTCGCAATTTAATGATGA 58.812 39.130 0.00 0.00 0.00 2.92
3415 7010 4.634004 ACTCGGTCGCAATTTAATGATGAA 59.366 37.500 0.00 0.00 0.00 2.57
3416 7011 5.123186 ACTCGGTCGCAATTTAATGATGAAA 59.877 36.000 0.00 0.00 0.00 2.69
3417 7012 5.568482 TCGGTCGCAATTTAATGATGAAAG 58.432 37.500 0.00 0.00 0.00 2.62
3418 7013 5.123186 TCGGTCGCAATTTAATGATGAAAGT 59.877 36.000 0.00 0.00 0.00 2.66
3419 7014 6.314152 TCGGTCGCAATTTAATGATGAAAGTA 59.686 34.615 0.00 0.00 0.00 2.24
3420 7015 6.628856 CGGTCGCAATTTAATGATGAAAGTAG 59.371 38.462 0.00 0.00 0.00 2.57
3421 7016 6.912591 GGTCGCAATTTAATGATGAAAGTAGG 59.087 38.462 0.00 0.00 0.00 3.18
3422 7017 7.201696 GGTCGCAATTTAATGATGAAAGTAGGA 60.202 37.037 0.00 0.00 0.00 2.94
3423 7018 7.852945 GTCGCAATTTAATGATGAAAGTAGGAG 59.147 37.037 0.00 0.00 0.00 3.69
3424 7019 7.012327 TCGCAATTTAATGATGAAAGTAGGAGG 59.988 37.037 0.00 0.00 0.00 4.30
3425 7020 7.012327 CGCAATTTAATGATGAAAGTAGGAGGA 59.988 37.037 0.00 0.00 0.00 3.71
3426 7021 8.854117 GCAATTTAATGATGAAAGTAGGAGGAT 58.146 33.333 0.00 0.00 0.00 3.24
3428 7023 9.927081 AATTTAATGATGAAAGTAGGAGGATGT 57.073 29.630 0.00 0.00 0.00 3.06
3432 7027 7.862274 ATGATGAAAGTAGGAGGATGTATCA 57.138 36.000 0.00 0.00 0.00 2.15
3433 7028 7.675161 TGATGAAAGTAGGAGGATGTATCAA 57.325 36.000 0.00 0.00 0.00 2.57
3434 7029 7.730084 TGATGAAAGTAGGAGGATGTATCAAG 58.270 38.462 0.00 0.00 0.00 3.02
3435 7030 7.565029 TGATGAAAGTAGGAGGATGTATCAAGA 59.435 37.037 0.00 0.00 0.00 3.02
3436 7031 7.921041 TGAAAGTAGGAGGATGTATCAAGAT 57.079 36.000 0.00 0.00 0.00 2.40
3437 7032 8.324191 TGAAAGTAGGAGGATGTATCAAGATT 57.676 34.615 0.00 0.00 0.00 2.40
3438 7033 9.434275 TGAAAGTAGGAGGATGTATCAAGATTA 57.566 33.333 0.00 0.00 0.00 1.75
3439 7034 9.921637 GAAAGTAGGAGGATGTATCAAGATTAG 57.078 37.037 0.00 0.00 0.00 1.73
3440 7035 8.429237 AAGTAGGAGGATGTATCAAGATTAGG 57.571 38.462 0.00 0.00 0.00 2.69
3441 7036 7.770662 AGTAGGAGGATGTATCAAGATTAGGA 58.229 38.462 0.00 0.00 0.00 2.94
3442 7037 8.405850 AGTAGGAGGATGTATCAAGATTAGGAT 58.594 37.037 0.00 0.00 0.00 3.24
3443 7038 9.041354 GTAGGAGGATGTATCAAGATTAGGATT 57.959 37.037 0.00 0.00 0.00 3.01
3444 7039 8.517323 AGGAGGATGTATCAAGATTAGGATTT 57.483 34.615 0.00 0.00 0.00 2.17
3445 7040 9.621239 AGGAGGATGTATCAAGATTAGGATTTA 57.379 33.333 0.00 0.00 0.00 1.40
3446 7041 9.660180 GGAGGATGTATCAAGATTAGGATTTAC 57.340 37.037 0.00 0.00 0.00 2.01
3449 7044 9.660180 GGATGTATCAAGATTAGGATTTACTCC 57.340 37.037 0.00 0.00 45.33 3.85
3464 7059 4.621068 TTACTCCGTCGTGATTTATCGT 57.379 40.909 0.00 0.00 0.00 3.73
3468 7063 5.032863 ACTCCGTCGTGATTTATCGTTAAG 58.967 41.667 0.00 0.00 0.00 1.85
3602 7417 7.377766 TCTGTACAACTATGCCAAAGATTTC 57.622 36.000 0.00 0.00 0.00 2.17
3640 7455 3.289834 CTGCGCACTGGGCTTTGT 61.290 61.111 18.03 0.00 42.10 2.83
3684 7574 5.988310 TCAGTAGGAATAACTCGTGGAAA 57.012 39.130 0.00 0.00 0.00 3.13
3703 7596 7.080724 GTGGAAAGACTCTTTTCTAATGCTTG 58.919 38.462 10.61 0.00 37.26 4.01
3706 7599 7.592903 GGAAAGACTCTTTTCTAATGCTTGTTG 59.407 37.037 5.49 0.00 37.26 3.33
3707 7600 6.006759 AGACTCTTTTCTAATGCTTGTTGC 57.993 37.500 0.00 0.00 43.25 4.17
3746 7639 4.795970 ATGCGAATTCACCGATTAACTC 57.204 40.909 6.22 0.00 0.00 3.01
3763 7656 4.543590 AACTCTCGGTCTTTGACATGAT 57.456 40.909 0.00 0.00 33.68 2.45
3926 7819 0.324285 CTCCTCAGCTTGGAGCAACT 59.676 55.000 16.80 0.00 45.56 3.16
3951 7844 1.283613 ACCTGGGTCAGAACAACAACA 59.716 47.619 0.00 0.00 32.44 3.33
3952 7845 1.949525 CCTGGGTCAGAACAACAACAG 59.050 52.381 0.00 0.00 32.44 3.16
3983 7882 1.300620 CAGTGCCGTCAAGTCCGAA 60.301 57.895 0.00 0.00 0.00 4.30
4103 8002 1.737008 GTTCTTCGACGAGTGGCCC 60.737 63.158 0.00 0.00 0.00 5.80
4211 8110 1.296755 TGACGTCCTCCGACTTCTCG 61.297 60.000 14.12 0.00 37.96 4.04
4298 8200 4.687215 TCCGTCGTCGTCGTCCCT 62.687 66.667 10.76 0.00 38.33 4.20
4325 8227 6.187682 TCTCCATAAGATGACAGACACTACA 58.812 40.000 0.00 0.00 0.00 2.74
4400 8307 1.352017 TGGTGTGTGGATTGATCTGCT 59.648 47.619 0.00 0.00 0.00 4.24
4407 8314 1.442526 GGATTGATCTGCTGGCGTGG 61.443 60.000 0.00 0.00 0.00 4.94
4537 8447 3.435327 GTGTCGGATTTGTATCAACAGCA 59.565 43.478 0.00 0.00 36.83 4.41
4538 8448 3.684305 TGTCGGATTTGTATCAACAGCAG 59.316 43.478 0.00 0.00 36.83 4.24
4539 8449 2.677836 TCGGATTTGTATCAACAGCAGC 59.322 45.455 0.00 0.00 36.83 5.25
4548 8458 0.664466 TCAACAGCAGCGAGTCGAAG 60.664 55.000 18.61 8.56 0.00 3.79
4568 8486 3.748083 AGGCTTCATAATCGCATCATGT 58.252 40.909 0.00 0.00 0.00 3.21
4582 8501 7.139896 TCGCATCATGTGTGTTTAATTAACT 57.860 32.000 0.00 0.00 39.38 2.24
4607 8526 1.079474 TGTGCTGAAATCGCCGCTA 60.079 52.632 0.00 0.00 0.00 4.26
4628 8547 0.647410 CTGACTAACGCGATGCTTGG 59.353 55.000 15.93 0.00 0.00 3.61
4675 8594 0.942884 GGCTTTGCTTGCTTGCAGAC 60.943 55.000 4.58 0.00 44.27 3.51
4733 8652 0.251209 AGTCTACACAGGTCGGCTGA 60.251 55.000 0.00 0.00 0.00 4.26
4853 8772 0.865769 GCGATGTCTGTTCGTTGGTT 59.134 50.000 0.00 0.00 38.81 3.67
4897 8820 1.676006 CGCCCTTTTAACATGCTAGGG 59.324 52.381 11.75 11.75 46.82 3.53
4899 8822 2.031870 CCCTTTTAACATGCTAGGGGC 58.968 52.381 9.28 0.00 41.56 5.80
4900 8823 2.358195 CCCTTTTAACATGCTAGGGGCT 60.358 50.000 9.28 0.00 41.56 5.19
4901 8824 2.952310 CCTTTTAACATGCTAGGGGCTC 59.048 50.000 0.00 0.00 42.39 4.70
4904 8827 0.837272 TAACATGCTAGGGGCTCCAC 59.163 55.000 4.79 0.00 42.39 4.02
4905 8828 1.207488 AACATGCTAGGGGCTCCACA 61.207 55.000 4.79 0.00 42.39 4.17
4945 8881 2.051804 GATGGTTGATTGCCTCGCGG 62.052 60.000 6.13 0.00 0.00 6.46
5034 8970 1.143277 TGGACGAAAGCTTGGGGTTTA 59.857 47.619 0.00 0.00 42.28 2.01
5073 9012 0.599991 CAGCAGCAGTCGTGGTTGTA 60.600 55.000 0.00 0.00 29.64 2.41
5139 9078 1.384525 CCAAACTTGGTGGACGAACA 58.615 50.000 0.00 0.00 43.43 3.18
5225 11494 4.785453 GCCTCCCTTCCCGTGCTG 62.785 72.222 0.00 0.00 0.00 4.41
5226 11495 4.785453 CCTCCCTTCCCGTGCTGC 62.785 72.222 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.517875 GAGCAAGCGGGCATGGAT 60.518 61.111 5.46 0.00 35.83 3.41
1 2 4.802051 GGAGCAAGCGGGCATGGA 62.802 66.667 5.46 0.00 35.83 3.41
37 38 3.764160 CTTGCTCCCCATCCTCGCC 62.764 68.421 0.00 0.00 0.00 5.54
38 39 2.203126 CTTGCTCCCCATCCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
39 40 2.507944 CCTTGCTCCCCATCCTCG 59.492 66.667 0.00 0.00 0.00 4.63
40 41 2.003548 ACCCTTGCTCCCCATCCTC 61.004 63.158 0.00 0.00 0.00 3.71
41 42 2.128226 ACCCTTGCTCCCCATCCT 59.872 61.111 0.00 0.00 0.00 3.24
42 43 2.276740 CACCCTTGCTCCCCATCC 59.723 66.667 0.00 0.00 0.00 3.51
43 44 2.276740 CCACCCTTGCTCCCCATC 59.723 66.667 0.00 0.00 0.00 3.51
44 45 4.066139 GCCACCCTTGCTCCCCAT 62.066 66.667 0.00 0.00 0.00 4.00
62 63 4.344865 TCCAAGCCCTTGCCGTCC 62.345 66.667 2.51 0.00 39.16 4.79
63 64 3.056328 GTCCAAGCCCTTGCCGTC 61.056 66.667 2.51 0.00 39.16 4.79
64 65 3.884774 TGTCCAAGCCCTTGCCGT 61.885 61.111 2.51 0.00 39.16 5.68
65 66 3.365265 GTGTCCAAGCCCTTGCCG 61.365 66.667 2.51 0.00 39.16 5.69
66 67 3.365265 CGTGTCCAAGCCCTTGCC 61.365 66.667 2.51 0.00 39.16 4.52
67 68 1.452145 TTTCGTGTCCAAGCCCTTGC 61.452 55.000 2.51 0.00 39.16 4.01
68 69 1.028905 TTTTCGTGTCCAAGCCCTTG 58.971 50.000 1.05 1.05 40.13 3.61
69 70 1.995376 ATTTTCGTGTCCAAGCCCTT 58.005 45.000 0.00 0.00 0.00 3.95
70 71 2.618045 CCTATTTTCGTGTCCAAGCCCT 60.618 50.000 0.00 0.00 0.00 5.19
71 72 1.743394 CCTATTTTCGTGTCCAAGCCC 59.257 52.381 0.00 0.00 0.00 5.19
72 73 2.161609 CACCTATTTTCGTGTCCAAGCC 59.838 50.000 0.00 0.00 0.00 4.35
73 74 2.161609 CCACCTATTTTCGTGTCCAAGC 59.838 50.000 0.00 0.00 0.00 4.01
74 75 3.670625 TCCACCTATTTTCGTGTCCAAG 58.329 45.455 0.00 0.00 0.00 3.61
75 76 3.773418 TCCACCTATTTTCGTGTCCAA 57.227 42.857 0.00 0.00 0.00 3.53
76 77 3.262151 TCATCCACCTATTTTCGTGTCCA 59.738 43.478 0.00 0.00 0.00 4.02
77 78 3.869065 TCATCCACCTATTTTCGTGTCC 58.131 45.455 0.00 0.00 0.00 4.02
78 79 4.332819 CCTTCATCCACCTATTTTCGTGTC 59.667 45.833 0.00 0.00 0.00 3.67
79 80 4.261801 CCTTCATCCACCTATTTTCGTGT 58.738 43.478 0.00 0.00 0.00 4.49
80 81 3.065371 GCCTTCATCCACCTATTTTCGTG 59.935 47.826 0.00 0.00 0.00 4.35
81 82 3.279434 GCCTTCATCCACCTATTTTCGT 58.721 45.455 0.00 0.00 0.00 3.85
82 83 2.287915 CGCCTTCATCCACCTATTTTCG 59.712 50.000 0.00 0.00 0.00 3.46
83 84 2.618709 CCGCCTTCATCCACCTATTTTC 59.381 50.000 0.00 0.00 0.00 2.29
84 85 2.654863 CCGCCTTCATCCACCTATTTT 58.345 47.619 0.00 0.00 0.00 1.82
85 86 1.133792 CCCGCCTTCATCCACCTATTT 60.134 52.381 0.00 0.00 0.00 1.40
86 87 0.474184 CCCGCCTTCATCCACCTATT 59.526 55.000 0.00 0.00 0.00 1.73
87 88 0.399949 TCCCGCCTTCATCCACCTAT 60.400 55.000 0.00 0.00 0.00 2.57
88 89 1.002403 TCCCGCCTTCATCCACCTA 59.998 57.895 0.00 0.00 0.00 3.08
89 90 2.285368 TCCCGCCTTCATCCACCT 60.285 61.111 0.00 0.00 0.00 4.00
90 91 2.190578 CTCCCGCCTTCATCCACC 59.809 66.667 0.00 0.00 0.00 4.61
91 92 1.144936 CTCTCCCGCCTTCATCCAC 59.855 63.158 0.00 0.00 0.00 4.02
92 93 1.001631 TCTCTCCCGCCTTCATCCA 59.998 57.895 0.00 0.00 0.00 3.41
93 94 1.745264 CTCTCTCCCGCCTTCATCC 59.255 63.158 0.00 0.00 0.00 3.51
94 95 0.757188 TCCTCTCTCCCGCCTTCATC 60.757 60.000 0.00 0.00 0.00 2.92
95 96 0.758685 CTCCTCTCTCCCGCCTTCAT 60.759 60.000 0.00 0.00 0.00 2.57
96 97 1.380515 CTCCTCTCTCCCGCCTTCA 60.381 63.158 0.00 0.00 0.00 3.02
97 98 2.131067 CCTCCTCTCTCCCGCCTTC 61.131 68.421 0.00 0.00 0.00 3.46
98 99 2.042435 CCTCCTCTCTCCCGCCTT 60.042 66.667 0.00 0.00 0.00 4.35
99 100 4.150454 CCCTCCTCTCTCCCGCCT 62.150 72.222 0.00 0.00 0.00 5.52
100 101 3.986116 AACCCTCCTCTCTCCCGCC 62.986 68.421 0.00 0.00 0.00 6.13
101 102 0.686769 TAAACCCTCCTCTCTCCCGC 60.687 60.000 0.00 0.00 0.00 6.13
102 103 1.342175 ACTAAACCCTCCTCTCTCCCG 60.342 57.143 0.00 0.00 0.00 5.14
103 104 2.112190 CACTAAACCCTCCTCTCTCCC 58.888 57.143 0.00 0.00 0.00 4.30
104 105 3.103080 TCACTAAACCCTCCTCTCTCC 57.897 52.381 0.00 0.00 0.00 3.71
105 106 5.685520 AATTCACTAAACCCTCCTCTCTC 57.314 43.478 0.00 0.00 0.00 3.20
106 107 6.455690 AAAATTCACTAAACCCTCCTCTCT 57.544 37.500 0.00 0.00 0.00 3.10
107 108 7.201741 GCATAAAATTCACTAAACCCTCCTCTC 60.202 40.741 0.00 0.00 0.00 3.20
108 109 6.603599 GCATAAAATTCACTAAACCCTCCTCT 59.396 38.462 0.00 0.00 0.00 3.69
109 110 6.377146 TGCATAAAATTCACTAAACCCTCCTC 59.623 38.462 0.00 0.00 0.00 3.71
110 111 6.252995 TGCATAAAATTCACTAAACCCTCCT 58.747 36.000 0.00 0.00 0.00 3.69
111 112 6.524101 TGCATAAAATTCACTAAACCCTCC 57.476 37.500 0.00 0.00 0.00 4.30
112 113 9.435688 AAATTGCATAAAATTCACTAAACCCTC 57.564 29.630 0.00 0.00 0.00 4.30
119 120 9.814899 CCCACATAAATTGCATAAAATTCACTA 57.185 29.630 0.00 0.00 0.00 2.74
120 121 7.769970 CCCCACATAAATTGCATAAAATTCACT 59.230 33.333 0.00 0.00 0.00 3.41
121 122 7.012232 CCCCCACATAAATTGCATAAAATTCAC 59.988 37.037 0.00 0.00 0.00 3.18
122 123 7.052873 CCCCCACATAAATTGCATAAAATTCA 58.947 34.615 0.00 0.00 0.00 2.57
123 124 7.495135 CCCCCACATAAATTGCATAAAATTC 57.505 36.000 0.00 0.00 0.00 2.17
146 147 4.280019 AACCCGACAGGCCAACCC 62.280 66.667 5.01 0.00 40.58 4.11
147 148 1.833787 TAGAACCCGACAGGCCAACC 61.834 60.000 5.01 0.00 40.58 3.77
148 149 0.672711 GTAGAACCCGACAGGCCAAC 60.673 60.000 5.01 0.00 40.58 3.77
149 150 1.675219 GTAGAACCCGACAGGCCAA 59.325 57.895 5.01 0.00 40.58 4.52
150 151 2.642254 CGTAGAACCCGACAGGCCA 61.642 63.158 5.01 0.00 40.58 5.36
151 152 1.315257 TACGTAGAACCCGACAGGCC 61.315 60.000 0.00 0.00 40.58 5.19
152 153 0.527565 TTACGTAGAACCCGACAGGC 59.472 55.000 0.00 0.00 40.58 4.85
153 154 2.480759 CCATTACGTAGAACCCGACAGG 60.481 54.545 0.00 0.00 43.78 4.00
154 155 2.424601 TCCATTACGTAGAACCCGACAG 59.575 50.000 0.00 0.00 0.00 3.51
155 156 2.164219 GTCCATTACGTAGAACCCGACA 59.836 50.000 0.00 0.00 0.00 4.35
156 157 2.792542 CGTCCATTACGTAGAACCCGAC 60.793 54.545 0.00 0.00 46.72 4.79
157 158 1.401552 CGTCCATTACGTAGAACCCGA 59.598 52.381 0.00 0.00 46.72 5.14
158 159 1.831343 CGTCCATTACGTAGAACCCG 58.169 55.000 0.00 0.00 46.72 5.28
168 169 2.960129 CCTCGGCGCGTCCATTAC 60.960 66.667 17.57 0.00 34.01 1.89
169 170 4.884257 GCCTCGGCGCGTCCATTA 62.884 66.667 17.57 3.96 34.01 1.90
178 179 3.933722 ATCCCTCATGCCTCGGCG 61.934 66.667 0.00 0.00 45.51 6.46
179 180 2.281345 CATCCCTCATGCCTCGGC 60.281 66.667 0.00 0.00 42.35 5.54
186 187 1.227764 CTGACCGGCATCCCTCATG 60.228 63.158 0.00 0.00 35.29 3.07
187 188 3.112205 GCTGACCGGCATCCCTCAT 62.112 63.158 0.00 0.00 0.00 2.90
188 189 3.785859 GCTGACCGGCATCCCTCA 61.786 66.667 0.00 0.00 0.00 3.86
189 190 3.036429 AAGCTGACCGGCATCCCTC 62.036 63.158 0.00 0.00 34.17 4.30
190 191 3.011517 AAGCTGACCGGCATCCCT 61.012 61.111 0.00 0.00 34.17 4.20
191 192 2.825836 CAAGCTGACCGGCATCCC 60.826 66.667 0.00 0.00 34.17 3.85
192 193 2.825836 CCAAGCTGACCGGCATCC 60.826 66.667 0.00 0.00 34.17 3.51
193 194 2.825836 CCCAAGCTGACCGGCATC 60.826 66.667 0.00 0.00 34.17 3.91
194 195 3.650950 ACCCAAGCTGACCGGCAT 61.651 61.111 0.00 0.00 34.17 4.40
195 196 4.641645 CACCCAAGCTGACCGGCA 62.642 66.667 0.00 0.00 34.17 5.69
196 197 4.643387 ACACCCAAGCTGACCGGC 62.643 66.667 0.00 0.00 0.00 6.13
197 198 1.106944 AAAACACCCAAGCTGACCGG 61.107 55.000 0.00 0.00 0.00 5.28
198 199 1.535462 CTAAAACACCCAAGCTGACCG 59.465 52.381 0.00 0.00 0.00 4.79
199 200 2.858745 TCTAAAACACCCAAGCTGACC 58.141 47.619 0.00 0.00 0.00 4.02
207 208 0.402504 ACGGGCATCTAAAACACCCA 59.597 50.000 0.00 0.00 40.87 4.51
208 209 1.092348 GACGGGCATCTAAAACACCC 58.908 55.000 0.00 0.00 37.19 4.61
209 210 1.092348 GGACGGGCATCTAAAACACC 58.908 55.000 0.00 0.00 0.00 4.16
223 224 6.245115 ACTTAAAAATAAAAGACCGGACGG 57.755 37.500 9.46 9.56 42.03 4.79
232 233 8.865978 GCCCAATTACGGACTTAAAAATAAAAG 58.134 33.333 0.00 0.00 0.00 2.27
237 238 4.142337 CGGCCCAATTACGGACTTAAAAAT 60.142 41.667 0.00 0.00 0.00 1.82
238 239 3.190953 CGGCCCAATTACGGACTTAAAAA 59.809 43.478 0.00 0.00 0.00 1.94
239 240 2.748532 CGGCCCAATTACGGACTTAAAA 59.251 45.455 0.00 0.00 0.00 1.52
243 244 0.037160 AACGGCCCAATTACGGACTT 59.963 50.000 0.00 0.00 0.00 3.01
245 246 1.698714 CGAACGGCCCAATTACGGAC 61.699 60.000 0.00 0.00 0.00 4.79
246 247 1.448189 CGAACGGCCCAATTACGGA 60.448 57.895 0.00 0.00 0.00 4.69
248 249 2.401990 GCGAACGGCCCAATTACG 59.598 61.111 0.00 0.00 34.80 3.18
275 277 0.748005 CGGCACCCCAAACCTCTATG 60.748 60.000 0.00 0.00 0.00 2.23
287 289 1.146263 CATCTACTTCCCGGCACCC 59.854 63.158 0.00 0.00 0.00 4.61
293 295 2.427453 AGTACTGTGCATCTACTTCCCG 59.573 50.000 0.00 0.00 0.00 5.14
298 300 3.090037 ACGGAAGTACTGTGCATCTACT 58.910 45.455 0.00 0.00 46.88 2.57
480 492 3.842007 ATTGCATGGGAAGAGAGAGAG 57.158 47.619 0.00 0.00 0.00 3.20
508 536 2.580867 CTGTAGCGAGCGAGTGGC 60.581 66.667 0.00 0.00 44.05 5.01
528 556 3.341043 GATGCGATGCGATGCGGT 61.341 61.111 0.00 0.00 0.00 5.68
549 591 0.976073 TCTCGTGGGGAGGAATGGAC 60.976 60.000 0.00 0.00 43.34 4.02
581 623 1.920574 CGACGACTGGTATTTCTGCTG 59.079 52.381 0.00 0.00 0.00 4.41
584 626 2.174764 CGACGACGACTGGTATTTCTG 58.825 52.381 0.00 0.00 42.66 3.02
611 653 1.656652 GTAGACGTACCAGGCTACGA 58.343 55.000 21.37 4.00 41.75 3.43
612 654 0.302890 CGTAGACGTACCAGGCTACG 59.697 60.000 17.95 17.95 46.48 3.51
613 655 0.028637 GCGTAGACGTACCAGGCTAC 59.971 60.000 3.73 4.20 42.22 3.58
686 737 1.342819 CTGTGGATCCCAGCTAGTAGC 59.657 57.143 14.62 14.62 42.84 3.58
791 842 1.919240 TACCGGCTTTGTCTCTCTCA 58.081 50.000 0.00 0.00 0.00 3.27
876 949 1.340697 GCGTCTTTAATGGGGTTCCCT 60.341 52.381 7.87 0.00 45.70 4.20
917 994 3.114616 TGCTCGCTCGCTTGCTTC 61.115 61.111 5.05 0.00 0.00 3.86
919 996 4.669842 TGTGCTCGCTCGCTTGCT 62.670 61.111 5.05 0.00 0.00 3.91
920 997 4.144681 CTGTGCTCGCTCGCTTGC 62.145 66.667 0.00 0.00 0.00 4.01
921 998 3.485431 CCTGTGCTCGCTCGCTTG 61.485 66.667 0.00 0.00 0.00 4.01
922 999 4.749310 CCCTGTGCTCGCTCGCTT 62.749 66.667 0.00 0.00 0.00 4.68
926 1003 4.400961 AAGCCCCTGTGCTCGCTC 62.401 66.667 0.00 0.00 41.80 5.03
927 1004 4.711949 CAAGCCCCTGTGCTCGCT 62.712 66.667 0.00 0.00 41.80 4.93
930 1007 3.875510 AAGCCAAGCCCCTGTGCTC 62.876 63.158 0.00 0.00 41.80 4.26
950 1027 4.339809 CACACAGCACACGACGCG 62.340 66.667 3.53 3.53 0.00 6.01
951 1028 4.649954 GCACACAGCACACGACGC 62.650 66.667 0.00 0.00 44.79 5.19
952 1029 4.339809 CGCACACAGCACACGACG 62.340 66.667 0.00 0.00 46.13 5.12
953 1030 4.649954 GCGCACACAGCACACGAC 62.650 66.667 0.30 0.00 46.13 4.34
961 1048 3.978723 CTCCCTCTCGCGCACACAG 62.979 68.421 8.75 0.00 0.00 3.66
1095 1188 1.348594 GCATGCTTACGCGGAGAAC 59.651 57.895 12.47 0.00 39.65 3.01
1144 1241 2.289002 ACGCACAAGCAAGAAAGAAGAG 59.711 45.455 0.00 0.00 42.27 2.85
1166 1263 2.159382 GAACATCCATGGAACCACGTT 58.841 47.619 20.67 16.13 0.00 3.99
1232 1333 3.151710 TCGCCATCCACCTACCGG 61.152 66.667 0.00 0.00 0.00 5.28
1431 1532 1.743772 CGGCGATGATGAAGAAAGGGT 60.744 52.381 0.00 0.00 0.00 4.34
1528 1671 2.676342 CCCGGATTAACAAAAGACCGAG 59.324 50.000 0.73 0.00 42.40 4.63
1640 1817 1.202806 CCTACGAATCCATGGTGCCAT 60.203 52.381 12.58 0.00 37.08 4.40
1711 1912 1.971695 GGAGCGTCTGTTTTGGGGG 60.972 63.158 0.00 0.00 0.00 5.40
1713 1914 0.593128 CAAGGAGCGTCTGTTTTGGG 59.407 55.000 0.00 0.00 0.00 4.12
1717 1918 2.365582 ACAAACAAGGAGCGTCTGTTT 58.634 42.857 4.18 4.18 33.61 2.83
1724 1925 1.400242 GCTGCTAACAAACAAGGAGCG 60.400 52.381 0.08 0.00 45.32 5.03
1755 1956 4.417506 ACGGAGAAAAACAAAAAGGTTCG 58.582 39.130 0.00 0.00 0.00 3.95
1760 1961 4.500127 ACCCAACGGAGAAAAACAAAAAG 58.500 39.130 0.00 0.00 0.00 2.27
1781 2000 8.405531 TCCATTAGTTAGATTTGCAGCATTAAC 58.594 33.333 0.00 3.95 0.00 2.01
1908 2572 0.616395 TCTTGCCCAGGTACGATCCA 60.616 55.000 0.00 0.00 0.00 3.41
2135 2799 2.363361 CGGGGTAGAGGGAGTGGT 59.637 66.667 0.00 0.00 0.00 4.16
2200 2870 1.374252 CGGAGGAGAACGTGTTGGG 60.374 63.158 0.00 0.00 0.00 4.12
2204 2874 4.719369 GCGCGGAGGAGAACGTGT 62.719 66.667 8.83 0.00 42.11 4.49
2229 2905 2.672908 CCCATGTGCTGCTGAGGA 59.327 61.111 0.00 0.00 0.00 3.71
2372 3048 3.697542 CCAATCAGTTTGAGGCATGATGA 59.302 43.478 0.00 0.00 37.53 2.92
2405 3081 4.838986 GGACCAAAGGTATCTATCTAGCCA 59.161 45.833 0.00 0.00 35.25 4.75
2407 3083 6.014012 AGAGGACCAAAGGTATCTATCTAGC 58.986 44.000 0.00 0.00 35.25 3.42
2499 3197 8.827177 AAAAGTTTCGGCGATAGATCATATTA 57.173 30.769 11.76 0.00 39.76 0.98
2500 3198 7.730364 AAAAGTTTCGGCGATAGATCATATT 57.270 32.000 11.76 0.00 39.76 1.28
2501 3199 7.730364 AAAAAGTTTCGGCGATAGATCATAT 57.270 32.000 11.76 0.00 39.76 1.78
2607 3305 3.129287 CGGGTTCCCAATCTGAAAATCTG 59.871 47.826 8.70 0.00 0.00 2.90
2608 3306 3.356290 CGGGTTCCCAATCTGAAAATCT 58.644 45.455 8.70 0.00 0.00 2.40
2609 3307 2.427095 CCGGGTTCCCAATCTGAAAATC 59.573 50.000 8.70 0.00 0.00 2.17
2610 3308 2.456577 CCGGGTTCCCAATCTGAAAAT 58.543 47.619 8.70 0.00 0.00 1.82
2611 3309 1.549037 CCCGGGTTCCCAATCTGAAAA 60.549 52.381 14.18 0.00 0.00 2.29
2612 3310 0.039035 CCCGGGTTCCCAATCTGAAA 59.961 55.000 14.18 0.00 0.00 2.69
2613 3311 1.688811 CCCGGGTTCCCAATCTGAA 59.311 57.895 14.18 0.00 0.00 3.02
2614 3312 2.305607 CCCCGGGTTCCCAATCTGA 61.306 63.158 21.85 0.00 0.00 3.27
2615 3313 2.275418 CCCCGGGTTCCCAATCTG 59.725 66.667 21.85 0.00 0.00 2.90
2858 3591 4.571984 GCTAAAATGGCCCAAATCATTGTC 59.428 41.667 0.00 0.00 34.28 3.18
2936 3673 0.762082 TGAAAATGGTGGGGCTTGCA 60.762 50.000 0.00 0.00 0.00 4.08
2938 3675 1.207811 GGATGAAAATGGTGGGGCTTG 59.792 52.381 0.00 0.00 0.00 4.01
2996 3733 7.129622 CGAAGTTAAATCAAGCAGTTGTACAA 58.870 34.615 3.59 3.59 34.98 2.41
3042 3779 2.286523 CGGCAGAGGAGTGGAAGGT 61.287 63.158 0.00 0.00 0.00 3.50
3087 3824 4.993905 ACAAACACAACTAAGCAGGAAAC 58.006 39.130 0.00 0.00 0.00 2.78
3188 3956 4.880164 AGGAACCAAGCATACCTAGAGTA 58.120 43.478 0.00 0.00 34.76 2.59
3226 3994 5.885020 AGATTTACGCGTAAGAATAGCAC 57.115 39.130 28.48 15.34 43.02 4.40
3382 6977 3.431922 TGCGACCGAGTAAATCCTAAG 57.568 47.619 0.00 0.00 0.00 2.18
3402 6997 9.927081 ACATCCTCCTACTTTCATCATTAAATT 57.073 29.630 0.00 0.00 0.00 1.82
3406 7001 9.379770 TGATACATCCTCCTACTTTCATCATTA 57.620 33.333 0.00 0.00 0.00 1.90
3407 7002 8.267620 TGATACATCCTCCTACTTTCATCATT 57.732 34.615 0.00 0.00 0.00 2.57
3408 7003 7.862274 TGATACATCCTCCTACTTTCATCAT 57.138 36.000 0.00 0.00 0.00 2.45
3409 7004 7.565029 TCTTGATACATCCTCCTACTTTCATCA 59.435 37.037 0.00 0.00 0.00 3.07
3410 7005 7.957002 TCTTGATACATCCTCCTACTTTCATC 58.043 38.462 0.00 0.00 0.00 2.92
3411 7006 7.921041 TCTTGATACATCCTCCTACTTTCAT 57.079 36.000 0.00 0.00 0.00 2.57
3412 7007 7.921041 ATCTTGATACATCCTCCTACTTTCA 57.079 36.000 0.00 0.00 0.00 2.69
3413 7008 9.921637 CTAATCTTGATACATCCTCCTACTTTC 57.078 37.037 0.00 0.00 0.00 2.62
3414 7009 8.875168 CCTAATCTTGATACATCCTCCTACTTT 58.125 37.037 0.00 0.00 0.00 2.66
3415 7010 8.235230 TCCTAATCTTGATACATCCTCCTACTT 58.765 37.037 0.00 0.00 0.00 2.24
3416 7011 7.770662 TCCTAATCTTGATACATCCTCCTACT 58.229 38.462 0.00 0.00 0.00 2.57
3417 7012 8.602472 ATCCTAATCTTGATACATCCTCCTAC 57.398 38.462 0.00 0.00 0.00 3.18
3418 7013 9.621239 AAATCCTAATCTTGATACATCCTCCTA 57.379 33.333 0.00 0.00 0.00 2.94
3419 7014 8.517323 AAATCCTAATCTTGATACATCCTCCT 57.483 34.615 0.00 0.00 0.00 3.69
3420 7015 9.660180 GTAAATCCTAATCTTGATACATCCTCC 57.340 37.037 0.00 0.00 0.00 4.30
3423 7018 9.660180 GGAGTAAATCCTAATCTTGATACATCC 57.340 37.037 0.00 0.00 45.64 3.51
3446 7041 5.032863 ACTTAACGATAAATCACGACGGAG 58.967 41.667 0.00 0.00 0.00 4.63
3447 7042 4.985413 ACTTAACGATAAATCACGACGGA 58.015 39.130 0.00 0.00 0.00 4.69
3448 7043 5.738693 TGTACTTAACGATAAATCACGACGG 59.261 40.000 0.00 0.00 0.00 4.79
3449 7044 6.779385 TGTACTTAACGATAAATCACGACG 57.221 37.500 0.00 0.00 0.00 5.12
3481 7076 2.967459 TGCAAAGTTACTCATGCACG 57.033 45.000 17.80 0.00 43.32 5.34
3602 7417 3.118956 AGTTGCTAGGAGATGAAAGGACG 60.119 47.826 0.00 0.00 0.00 4.79
3640 7455 9.448438 ACTGAATAGTGCAATACTTGTTTATGA 57.552 29.630 0.00 0.00 40.89 2.15
3650 7465 9.765795 AGTTATTCCTACTGAATAGTGCAATAC 57.234 33.333 0.00 0.00 44.61 1.89
3652 7467 7.653713 CGAGTTATTCCTACTGAATAGTGCAAT 59.346 37.037 0.00 0.00 44.61 3.56
3684 7574 6.006759 GCAACAAGCATTAGAAAAGAGTCT 57.993 37.500 0.00 0.00 44.79 3.24
3703 7596 7.112009 CGCATATATGAAGTACAAACATGCAAC 59.888 37.037 17.10 0.00 0.00 4.17
3706 7599 6.887368 TCGCATATATGAAGTACAAACATGC 58.113 36.000 17.10 0.00 0.00 4.06
3707 7600 9.882996 AATTCGCATATATGAAGTACAAACATG 57.117 29.630 17.10 0.00 0.00 3.21
3746 7639 5.464722 CCTGAATATCATGTCAAAGACCGAG 59.535 44.000 0.00 0.00 0.00 4.63
3763 7656 6.860790 TTCCATATGCGGTATACCTGAATA 57.139 37.500 19.68 16.07 0.00 1.75
3951 7844 2.203308 ACTGTTGCTGCTGCTGCT 60.203 55.556 27.67 8.50 40.48 4.24
3952 7845 2.050351 CACTGTTGCTGCTGCTGC 60.050 61.111 22.51 22.51 40.48 5.25
4004 7903 3.083997 CACCCCGGGAAGGAGAGG 61.084 72.222 26.32 4.48 45.00 3.69
4044 7943 2.892425 CTTCGCGGAGTCCATGGC 60.892 66.667 6.14 3.57 0.00 4.40
4045 7944 2.892425 GCTTCGCGGAGTCCATGG 60.892 66.667 17.40 4.97 0.00 3.66
4046 7945 2.125552 TGCTTCGCGGAGTCCATG 60.126 61.111 17.40 0.06 0.00 3.66
4256 8155 1.146263 GCTGCCGGCCTAGTACATT 59.854 57.895 26.77 0.00 34.27 2.71
4282 8181 4.456253 CAGGGACGACGACGACGG 62.456 72.222 22.36 6.21 44.46 4.79
4298 8200 5.481824 AGTGTCTGTCATCTTATGGAGAACA 59.518 40.000 0.00 0.00 38.06 3.18
4360 8267 3.120199 CCATTCAGTTTAAGTCACCTGCG 60.120 47.826 0.00 0.00 0.00 5.18
4400 8307 4.572571 GGAACCCACACCACGCCA 62.573 66.667 0.00 0.00 0.00 5.69
4407 8314 1.897560 CCAGAAGAAGGAACCCACAC 58.102 55.000 0.00 0.00 0.00 3.82
4443 8350 4.293648 TACTGCTGCACGCACCGT 62.294 61.111 0.00 7.29 45.47 4.83
4445 8352 3.793144 GCTACTGCTGCACGCACC 61.793 66.667 0.00 0.00 45.47 5.01
4469 8376 4.042271 TCATATATAGGGTCGAGGTGCA 57.958 45.455 0.00 0.00 0.00 4.57
4512 8422 3.676172 TGTTGATACAAATCCGACACGAC 59.324 43.478 0.00 0.00 0.00 4.34
4537 8447 1.103803 TATGAAGCCTTCGACTCGCT 58.896 50.000 0.00 0.00 0.00 4.93
4538 8448 1.922570 TTATGAAGCCTTCGACTCGC 58.077 50.000 0.00 0.00 0.00 5.03
4539 8449 2.721603 CGATTATGAAGCCTTCGACTCG 59.278 50.000 0.00 2.75 31.74 4.18
4548 8458 3.251729 ACACATGATGCGATTATGAAGCC 59.748 43.478 0.00 0.00 31.39 4.35
4568 8486 7.661437 AGCACAGATCAGAGTTAATTAAACACA 59.339 33.333 0.00 0.00 40.83 3.72
4582 8501 2.274437 GCGATTTCAGCACAGATCAGA 58.726 47.619 0.00 0.00 34.19 3.27
4607 8526 1.726791 CAAGCATCGCGTTAGTCAGTT 59.273 47.619 5.77 0.00 0.00 3.16
4675 8594 1.267806 AGTTGCCACATCTTCTTTGCG 59.732 47.619 0.00 0.00 0.00 4.85
4899 8822 4.335647 AAGCGCAGGGGTGTGGAG 62.336 66.667 11.47 0.00 0.00 3.86
4900 8823 4.329545 GAAGCGCAGGGGTGTGGA 62.330 66.667 11.47 0.00 0.00 4.02
4901 8824 4.641645 TGAAGCGCAGGGGTGTGG 62.642 66.667 11.47 0.00 0.00 4.17
4904 8827 4.988598 ACGTGAAGCGCAGGGGTG 62.989 66.667 11.47 0.00 46.11 4.61
4905 8828 4.681978 GACGTGAAGCGCAGGGGT 62.682 66.667 11.47 0.00 46.11 4.95
4908 8844 2.357517 AAGGACGTGAAGCGCAGG 60.358 61.111 11.47 0.00 46.11 4.85
4911 8847 1.421485 CATCAAGGACGTGAAGCGC 59.579 57.895 0.00 0.00 46.11 5.92
4998 8934 2.291043 CCACCCGTAACCCTCAGCT 61.291 63.158 0.00 0.00 0.00 4.24
5034 8970 2.092429 TGCGATTATTGCTCCCTTTCCT 60.092 45.455 5.97 0.00 0.00 3.36
5093 9032 1.298993 CACAGTGCAGATCCAGCCT 59.701 57.895 5.41 0.41 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.