Multiple sequence alignment - TraesCS6B01G295700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G295700 chr6B 100.000 4727 0 0 4755 9481 531011733 531007007 0.000000e+00 8730.0
1 TraesCS6B01G295700 chr6B 100.000 4374 0 0 1 4374 531016487 531012114 0.000000e+00 8078.0
2 TraesCS6B01G295700 chr6A 92.878 4774 239 41 4755 9480 495256384 495251664 0.000000e+00 6839.0
3 TraesCS6B01G295700 chr6A 91.117 2015 162 13 2372 4374 495258457 495256448 0.000000e+00 2713.0
4 TraesCS6B01G295700 chr6A 87.678 1688 143 25 624 2308 495260109 495258484 0.000000e+00 1905.0
5 TraesCS6B01G295700 chr6A 93.750 608 26 4 8875 9481 495141288 495140692 0.000000e+00 902.0
6 TraesCS6B01G295700 chr6A 81.940 299 39 11 9099 9395 495107585 495107300 1.230000e-58 239.0
7 TraesCS6B01G295700 chr6D 95.158 3903 171 11 4755 8649 348652230 348656122 0.000000e+00 6144.0
8 TraesCS6B01G295700 chr6D 91.267 2004 143 18 2372 4370 348650190 348652166 0.000000e+00 2702.0
9 TraesCS6B01G295700 chr6D 88.484 2197 185 33 116 2308 348648031 348650163 0.000000e+00 2593.0
10 TraesCS6B01G295700 chr6D 90.690 290 7 4 9176 9460 348656119 348656393 1.500000e-97 368.0
11 TraesCS6B01G295700 chr1A 88.174 3915 353 67 4755 8612 454519529 454523390 0.000000e+00 4564.0
12 TraesCS6B01G295700 chr1A 90.388 2164 181 22 2214 4361 454517315 454519467 0.000000e+00 2819.0
13 TraesCS6B01G295700 chr1A 90.682 719 62 2 1286 2001 454516162 454516878 0.000000e+00 952.0
14 TraesCS6B01G295700 chr1A 90.385 52 3 2 7672 7723 560341571 560341620 6.140000e-07 67.6
15 TraesCS6B01G295700 chr1B 88.290 3877 334 66 4756 8574 476875204 476879018 0.000000e+00 4534.0
16 TraesCS6B01G295700 chr1B 91.288 1917 149 14 2221 4128 476872837 476874744 0.000000e+00 2599.0
17 TraesCS6B01G295700 chr1B 86.947 881 68 16 1209 2053 476871782 476872651 0.000000e+00 946.0
18 TraesCS6B01G295700 chr1B 84.519 239 30 7 4127 4361 476874906 476875141 7.410000e-56 230.0
19 TraesCS6B01G295700 chr1B 77.165 254 41 12 8370 8612 476911703 476911950 2.150000e-26 132.0
20 TraesCS6B01G295700 chr1D 89.996 2269 194 23 2105 4361 355073257 355075504 0.000000e+00 2902.0
21 TraesCS6B01G295700 chr1D 91.727 2055 148 14 4756 6797 355075567 355077612 0.000000e+00 2833.0
22 TraesCS6B01G295700 chr1D 85.655 1924 201 44 6727 8612 355077614 355079500 0.000000e+00 1954.0
23 TraesCS6B01G295700 chr1D 89.394 792 60 1 1286 2053 355072459 355073250 0.000000e+00 976.0
24 TraesCS6B01G295700 chr1D 90.964 166 15 0 3898 4063 45407600 45407435 3.450000e-54 224.0
25 TraesCS6B01G295700 chr1D 79.167 216 31 11 8407 8612 355085895 355086106 4.620000e-28 137.0
26 TraesCS6B01G295700 chr5B 84.842 983 131 13 2451 3424 70360221 70361194 0.000000e+00 974.0
27 TraesCS6B01G295700 chr5B 81.976 1093 158 28 2329 3408 70497790 70498856 0.000000e+00 891.0
28 TraesCS6B01G295700 chr5B 82.840 979 140 18 2460 3423 70439956 70440921 0.000000e+00 852.0
29 TraesCS6B01G295700 chr5B 78.087 1150 162 43 5114 6206 70543051 70544167 0.000000e+00 645.0
30 TraesCS6B01G295700 chr5B 85.622 619 79 8 1254 1865 70496905 70497520 8.030000e-180 641.0
31 TraesCS6B01G295700 chr5B 83.308 659 87 14 5549 6206 70389347 70389983 3.810000e-163 586.0
32 TraesCS6B01G295700 chr5B 80.632 728 114 23 5537 6251 70612513 70613226 1.080000e-148 538.0
33 TraesCS6B01G295700 chr5B 81.719 640 98 16 1227 1865 70355875 70356496 5.080000e-142 516.0
34 TraesCS6B01G295700 chr5B 74.261 1049 162 57 7037 8039 70554317 70555303 9.120000e-90 342.0
35 TraesCS6B01G295700 chr5B 78.901 455 75 12 6780 7227 70392407 70392847 1.200000e-73 289.0
36 TraesCS6B01G295700 chr5B 83.105 219 35 2 8165 8382 70545484 70545701 2.090000e-46 198.0
37 TraesCS6B01G295700 chr5B 75.956 366 60 23 5124 5469 70611953 70612310 7.620000e-36 163.0
38 TraesCS6B01G295700 chr5B 77.160 324 39 23 7653 7961 70393087 70393390 1.270000e-33 156.0
39 TraesCS6B01G295700 chr5D 80.968 1240 183 35 2214 3423 60217399 60216183 0.000000e+00 933.0
40 TraesCS6B01G295700 chr5D 81.869 1070 155 27 2364 3417 60160343 60159297 0.000000e+00 865.0
41 TraesCS6B01G295700 chr5D 80.239 1088 161 32 5144 6199 60087207 60086142 0.000000e+00 769.0
42 TraesCS6B01G295700 chr5D 85.781 640 74 12 1229 1865 60183219 60182594 0.000000e+00 662.0
43 TraesCS6B01G295700 chr5D 85.110 544 78 3 1366 1908 60218302 60217761 3.870000e-153 553.0
44 TraesCS6B01G295700 chr5D 84.919 431 56 6 5778 6205 60077578 60077154 2.450000e-115 427.0
45 TraesCS6B01G295700 chr5D 79.100 622 103 18 6318 6922 60077143 60076532 4.120000e-108 403.0
46 TraesCS6B01G295700 chr5D 73.871 1041 174 56 7037 8039 60085434 60084454 9.180000e-85 326.0
47 TraesCS6B01G295700 chr5D 80.151 398 66 7 6334 6722 60253269 60252876 1.560000e-72 285.0
48 TraesCS6B01G295700 chr5D 74.964 699 113 34 5147 5811 60013460 60012790 2.030000e-66 265.0
49 TraesCS6B01G295700 chr5A 82.372 607 98 5 2823 3425 48772048 48771447 3.920000e-143 520.0
50 TraesCS6B01G295700 chr5A 82.547 424 63 9 2365 2784 48828232 48827816 7.000000e-96 363.0
51 TraesCS6B01G295700 chr5A 77.556 450 81 11 6783 7226 48764542 48764107 4.390000e-63 254.0
52 TraesCS6B01G295700 chr5A 77.803 437 79 11 6299 6722 48765157 48764726 4.390000e-63 254.0
53 TraesCS6B01G295700 chr3D 84.733 524 68 9 7901 8419 193944749 193945265 1.830000e-141 514.0
54 TraesCS6B01G295700 chr3D 83.459 532 73 11 7901 8428 193942404 193942924 1.850000e-131 481.0
55 TraesCS6B01G295700 chr2D 88.618 369 25 9 3502 3869 37136962 37137314 5.260000e-117 433.0
56 TraesCS6B01G295700 chr3A 87.366 372 27 7 3502 3869 77717792 77717437 8.860000e-110 409.0
57 TraesCS6B01G295700 chrUn 74.071 1103 225 44 2975 4054 162359343 162358279 6.900000e-106 396.0
58 TraesCS6B01G295700 chr4B 86.179 369 34 6 3502 3869 537204323 537204675 5.370000e-102 383.0
59 TraesCS6B01G295700 chr2B 88.509 322 19 7 3550 3869 31066762 31067067 3.230000e-99 374.0
60 TraesCS6B01G295700 chr7D 76.994 652 124 21 6289 6932 580746321 580745688 5.450000e-92 350.0
61 TraesCS6B01G295700 chr7D 79.397 398 54 14 7931 8322 106342372 106341997 1.220000e-63 255.0
62 TraesCS6B01G295700 chr7D 93.162 117 8 0 3938 4054 106353216 106353100 1.270000e-38 172.0
63 TraesCS6B01G295700 chr7D 86.452 155 21 0 5070 5224 106352837 106352683 4.550000e-38 171.0
64 TraesCS6B01G295700 chr7D 87.097 124 10 2 5318 5441 106352667 106352550 1.660000e-27 135.0
65 TraesCS6B01G295700 chr4A 92.411 224 14 1 3512 3732 13253054 13253277 5.530000e-82 316.0
66 TraesCS6B01G295700 chr2A 90.708 226 18 1 3512 3734 628693473 628693248 2.000000e-76 298.0
67 TraesCS6B01G295700 chr7A 81.544 298 43 6 8030 8322 111916255 111915965 1.590000e-57 235.0
68 TraesCS6B01G295700 chr7A 92.105 114 9 0 3938 4051 111943242 111943129 2.740000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G295700 chr6B 531007007 531016487 9480 True 8404.000000 8730 100.000000 1 9481 2 chr6B.!!$R1 9480
1 TraesCS6B01G295700 chr6A 495251664 495260109 8445 True 3819.000000 6839 90.557667 624 9480 3 chr6A.!!$R3 8856
2 TraesCS6B01G295700 chr6A 495140692 495141288 596 True 902.000000 902 93.750000 8875 9481 1 chr6A.!!$R2 606
3 TraesCS6B01G295700 chr6D 348648031 348656393 8362 False 2951.750000 6144 91.399750 116 9460 4 chr6D.!!$F1 9344
4 TraesCS6B01G295700 chr1A 454516162 454523390 7228 False 2778.333333 4564 89.748000 1286 8612 3 chr1A.!!$F2 7326
5 TraesCS6B01G295700 chr1B 476871782 476879018 7236 False 2077.250000 4534 87.761000 1209 8574 4 chr1B.!!$F2 7365
6 TraesCS6B01G295700 chr1D 355072459 355079500 7041 False 2166.250000 2902 89.193000 1286 8612 4 chr1D.!!$F2 7326
7 TraesCS6B01G295700 chr5B 70439956 70440921 965 False 852.000000 852 82.840000 2460 3423 1 chr5B.!!$F1 963
8 TraesCS6B01G295700 chr5B 70496905 70498856 1951 False 766.000000 891 83.799000 1254 3408 2 chr5B.!!$F5 2154
9 TraesCS6B01G295700 chr5B 70355875 70361194 5319 False 745.000000 974 83.280500 1227 3424 2 chr5B.!!$F3 2197
10 TraesCS6B01G295700 chr5B 70543051 70545701 2650 False 421.500000 645 80.596000 5114 8382 2 chr5B.!!$F6 3268
11 TraesCS6B01G295700 chr5B 70611953 70613226 1273 False 350.500000 538 78.294000 5124 6251 2 chr5B.!!$F7 1127
12 TraesCS6B01G295700 chr5B 70389347 70393390 4043 False 343.666667 586 79.789667 5549 7961 3 chr5B.!!$F4 2412
13 TraesCS6B01G295700 chr5B 70554317 70555303 986 False 342.000000 342 74.261000 7037 8039 1 chr5B.!!$F2 1002
14 TraesCS6B01G295700 chr5D 60159297 60160343 1046 True 865.000000 865 81.869000 2364 3417 1 chr5D.!!$R2 1053
15 TraesCS6B01G295700 chr5D 60216183 60218302 2119 True 743.000000 933 83.039000 1366 3423 2 chr5D.!!$R7 2057
16 TraesCS6B01G295700 chr5D 60182594 60183219 625 True 662.000000 662 85.781000 1229 1865 1 chr5D.!!$R3 636
17 TraesCS6B01G295700 chr5D 60084454 60087207 2753 True 547.500000 769 77.055000 5144 8039 2 chr5D.!!$R6 2895
18 TraesCS6B01G295700 chr5D 60076532 60077578 1046 True 415.000000 427 82.009500 5778 6922 2 chr5D.!!$R5 1144
19 TraesCS6B01G295700 chr5D 60012790 60013460 670 True 265.000000 265 74.964000 5147 5811 1 chr5D.!!$R1 664
20 TraesCS6B01G295700 chr5A 48771447 48772048 601 True 520.000000 520 82.372000 2823 3425 1 chr5A.!!$R1 602
21 TraesCS6B01G295700 chr5A 48764107 48765157 1050 True 254.000000 254 77.679500 6299 7226 2 chr5A.!!$R3 927
22 TraesCS6B01G295700 chr3D 193942404 193945265 2861 False 497.500000 514 84.096000 7901 8428 2 chr3D.!!$F1 527
23 TraesCS6B01G295700 chrUn 162358279 162359343 1064 True 396.000000 396 74.071000 2975 4054 1 chrUn.!!$R1 1079
24 TraesCS6B01G295700 chr7D 580745688 580746321 633 True 350.000000 350 76.994000 6289 6932 1 chr7D.!!$R2 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 434 0.253044 CCTCCTCGAATCCCAAAGCA 59.747 55.000 0.00 0.00 0.00 3.91 F
2189 2566 0.098728 CTGGCCGCATAAGGTTTTCG 59.901 55.000 0.00 0.00 0.00 3.46 F
2549 6282 0.540830 AGCAGTCGGAGAACTGGACT 60.541 55.000 6.21 0.00 39.69 3.85 F
3337 7099 0.961857 TGTGGCTGCAGCACTAATGG 60.962 55.000 37.63 0.00 44.36 3.16 F
3557 7323 0.329596 AGGAGATTCGGCAAAGGCTT 59.670 50.000 0.00 0.00 40.87 4.35 F
5313 9327 0.112218 ATTGGCTACAGGTGGCACAA 59.888 50.000 20.82 10.97 44.16 3.33 F
5969 10164 1.004927 GGTGCGATGCTTTTACTAGCG 60.005 52.381 0.00 0.00 44.18 4.26 F
6818 13046 2.857186 AATGTTGGAAAACATGGGGC 57.143 45.000 4.94 0.00 42.13 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 2872 0.955428 GCGCTTGGTGATTCAGGTGA 60.955 55.000 0.00 0.00 0.00 4.02 R
3068 6821 1.022451 CACATGGCTGGCAATTTGGC 61.022 55.000 15.53 15.53 44.03 4.52 R
3357 7123 1.034838 ACCCGAGCTAGAGACTGCAG 61.035 60.000 13.48 13.48 0.00 4.41 R
4929 8874 1.558756 CAGCCAATCCTTCCTCTCAGT 59.441 52.381 0.00 0.00 0.00 3.41 R
5430 9444 2.082836 TACCAAATTGGCCACGGGGT 62.083 55.000 12.67 18.41 42.67 4.95 R
6262 10465 3.555966 CTTGTCCTTGTCCTTGTCCTTT 58.444 45.455 0.00 0.00 0.00 3.11 R
7382 13657 1.378646 GTTGCTGGCTTAGGGTCCC 60.379 63.158 0.00 0.00 0.00 4.46 R
8688 15979 1.270839 CCAGGATGTCCACGTTCACTT 60.271 52.381 1.30 0.00 38.89 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.385358 AGAAAAGCAAAGCGAAGGAAAA 57.615 36.364 0.00 0.00 0.00 2.29
53 54 6.481954 AAATTCAGGAAGTTGTACGATCAC 57.518 37.500 0.00 0.00 0.00 3.06
57 58 4.748102 TCAGGAAGTTGTACGATCACAAAC 59.252 41.667 0.51 0.00 39.98 2.93
58 59 4.509970 CAGGAAGTTGTACGATCACAAACA 59.490 41.667 0.51 0.00 39.98 2.83
59 60 5.179368 CAGGAAGTTGTACGATCACAAACAT 59.821 40.000 0.51 0.00 39.98 2.71
60 61 5.179368 AGGAAGTTGTACGATCACAAACATG 59.821 40.000 0.51 0.00 39.98 3.21
62 63 5.342806 AGTTGTACGATCACAAACATGTG 57.657 39.130 0.00 2.60 39.98 3.21
63 64 4.814234 AGTTGTACGATCACAAACATGTGT 59.186 37.500 0.00 0.00 39.98 3.72
64 65 4.983215 TGTACGATCACAAACATGTGTC 57.017 40.909 0.00 5.50 40.45 3.67
66 67 2.151202 ACGATCACAAACATGTGTCCC 58.849 47.619 0.00 0.11 40.45 4.46
67 68 1.468520 CGATCACAAACATGTGTCCCC 59.531 52.381 0.00 0.00 40.45 4.81
69 70 2.443958 TCACAAACATGTGTCCCCAA 57.556 45.000 0.00 0.00 40.45 4.12
71 72 3.303938 TCACAAACATGTGTCCCCAAAT 58.696 40.909 0.00 0.00 40.45 2.32
72 73 3.708631 TCACAAACATGTGTCCCCAAATT 59.291 39.130 0.00 0.00 40.45 1.82
73 74 4.895889 TCACAAACATGTGTCCCCAAATTA 59.104 37.500 0.00 0.00 40.45 1.40
75 76 4.898861 ACAAACATGTGTCCCCAAATTAGT 59.101 37.500 0.00 0.00 0.00 2.24
76 77 5.365314 ACAAACATGTGTCCCCAAATTAGTT 59.635 36.000 0.00 0.00 0.00 2.24
77 78 5.467035 AACATGTGTCCCCAAATTAGTTG 57.533 39.130 0.00 0.00 36.94 3.16
78 79 3.258123 ACATGTGTCCCCAAATTAGTTGC 59.742 43.478 0.00 0.00 35.74 4.17
79 80 2.950781 TGTGTCCCCAAATTAGTTGCA 58.049 42.857 0.00 0.00 35.74 4.08
80 81 2.890311 TGTGTCCCCAAATTAGTTGCAG 59.110 45.455 0.00 0.00 35.74 4.41
81 82 2.231235 GTGTCCCCAAATTAGTTGCAGG 59.769 50.000 0.00 0.00 35.74 4.85
82 83 1.824852 GTCCCCAAATTAGTTGCAGGG 59.175 52.381 1.23 1.23 39.11 4.45
83 84 1.713647 TCCCCAAATTAGTTGCAGGGA 59.286 47.619 5.54 5.54 42.39 4.20
84 85 2.314549 TCCCCAAATTAGTTGCAGGGAT 59.685 45.455 5.54 0.00 40.75 3.85
85 86 3.529734 TCCCCAAATTAGTTGCAGGGATA 59.470 43.478 5.54 0.00 40.75 2.59
87 88 4.901250 CCCCAAATTAGTTGCAGGGATATT 59.099 41.667 5.00 0.00 39.78 1.28
89 90 5.291971 CCAAATTAGTTGCAGGGATATTGC 58.708 41.667 0.00 0.00 41.86 3.56
127 128 1.226101 CGCATGTGACCGCATGTTC 60.226 57.895 20.44 7.84 45.75 3.18
128 129 1.137404 GCATGTGACCGCATGTTCC 59.863 57.895 20.44 5.09 45.75 3.62
136 137 2.611751 TGACCGCATGTTCCATTAATCG 59.388 45.455 0.00 0.00 0.00 3.34
164 165 4.797693 TGGTAAATACAACACACACACG 57.202 40.909 0.00 0.00 0.00 4.49
189 190 0.611714 GAAACCGGCTAGAAGGGTCA 59.388 55.000 0.00 0.00 32.47 4.02
200 201 3.515602 AGAAGGGTCAAGAGCAAACAT 57.484 42.857 1.42 0.00 0.00 2.71
282 283 4.099573 TCCTTAGGCTAATTCTGAAGTCGG 59.900 45.833 7.54 1.67 0.00 4.79
287 288 4.127171 GGCTAATTCTGAAGTCGGCATTA 58.873 43.478 10.28 0.00 0.00 1.90
289 290 5.239525 GGCTAATTCTGAAGTCGGCATTATT 59.760 40.000 10.28 0.00 0.00 1.40
300 301 6.169557 AGTCGGCATTATTACATCTAACCA 57.830 37.500 0.00 0.00 0.00 3.67
303 304 6.649141 GTCGGCATTATTACATCTAACCATCA 59.351 38.462 0.00 0.00 0.00 3.07
308 309 7.334421 GCATTATTACATCTAACCATCATCGGT 59.666 37.037 0.00 0.00 42.71 4.69
328 329 3.384789 GGTTTCAAAGGAGAACCAAAGCT 59.615 43.478 0.00 0.00 38.94 3.74
338 339 0.322546 AACCAAAGCTTAGGAGGGCG 60.323 55.000 0.00 0.00 0.00 6.13
361 362 1.396301 GTGAGCCGATGAAGAAGCTTG 59.604 52.381 2.10 0.00 35.23 4.01
364 365 1.308069 GCCGATGAAGAAGCTTGCCA 61.308 55.000 2.10 0.00 0.00 4.92
393 394 1.742761 CCTTGATCGATGTGGCTTGT 58.257 50.000 0.54 0.00 0.00 3.16
427 428 1.484444 CCCCATCCTCCTCGAATCCC 61.484 65.000 0.00 0.00 0.00 3.85
433 434 0.253044 CCTCCTCGAATCCCAAAGCA 59.747 55.000 0.00 0.00 0.00 3.91
434 435 1.133976 CCTCCTCGAATCCCAAAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
467 468 1.736645 CGTCGTCGAGGCCAAACAT 60.737 57.895 5.01 0.00 39.71 2.71
521 523 0.521735 GGAACCACCATTTCACTCGC 59.478 55.000 0.00 0.00 38.79 5.03
536 538 2.823593 CGCCCGCCAATGACATCA 60.824 61.111 0.00 0.00 0.00 3.07
571 574 5.809051 AGATATCGACCGAACACCTAAAAAC 59.191 40.000 0.00 0.00 0.00 2.43
578 581 2.154389 CGAACACCTAAAAACCGTCGAG 59.846 50.000 0.00 0.00 0.00 4.04
579 582 2.896745 ACACCTAAAAACCGTCGAGT 57.103 45.000 0.00 0.00 0.00 4.18
582 585 3.248266 CACCTAAAAACCGTCGAGTAGG 58.752 50.000 0.00 0.00 35.30 3.18
610 613 1.004440 GGGAGACATAGCCCATCGC 60.004 63.158 0.00 0.00 44.07 4.58
620 623 1.447838 GCCCATCGCTTCTTCGACA 60.448 57.895 0.00 0.00 41.62 4.35
622 625 0.389817 CCCATCGCTTCTTCGACACA 60.390 55.000 0.00 0.00 41.62 3.72
650 653 1.100510 TGTTGTCTAGACGGGATCGG 58.899 55.000 17.85 0.00 41.39 4.18
688 691 0.531532 GGATGCGCTGCTACTGTCAT 60.532 55.000 9.73 0.00 0.00 3.06
705 708 2.483877 GTCATCGCCAAGAACAACATCA 59.516 45.455 0.00 0.00 0.00 3.07
708 711 1.731709 TCGCCAAGAACAACATCATCG 59.268 47.619 0.00 0.00 0.00 3.84
713 716 4.556501 GCCAAGAACAACATCATCGAACAA 60.557 41.667 0.00 0.00 0.00 2.83
719 722 5.283060 ACAACATCATCGAACAAACTAGC 57.717 39.130 0.00 0.00 0.00 3.42
819 823 1.109920 ACATGGAGATCCGGGACTCG 61.110 60.000 17.67 10.03 39.43 4.18
842 846 2.049156 CCTCACGTCGCTGAAGCA 60.049 61.111 2.79 0.00 42.21 3.91
858 862 2.105128 CAGCGGACGGAGGATGAC 59.895 66.667 0.00 0.00 0.00 3.06
899 903 2.908015 CCGACGGTGGGATTGGAT 59.092 61.111 5.48 0.00 0.00 3.41
900 904 1.523711 CCGACGGTGGGATTGGATG 60.524 63.158 5.48 0.00 0.00 3.51
904 908 1.453745 CGGTGGGATTGGATGGTGG 60.454 63.158 0.00 0.00 0.00 4.61
905 909 1.920734 CGGTGGGATTGGATGGTGGA 61.921 60.000 0.00 0.00 0.00 4.02
920 924 0.460987 GTGGATGCACCCTCTTCTCG 60.461 60.000 5.98 0.00 38.00 4.04
930 934 1.194772 CCCTCTTCTCGCGTGTTTTTC 59.805 52.381 5.77 0.00 0.00 2.29
932 936 2.544267 CCTCTTCTCGCGTGTTTTTCTT 59.456 45.455 5.77 0.00 0.00 2.52
935 939 3.869246 TCTTCTCGCGTGTTTTTCTTCTT 59.131 39.130 5.77 0.00 0.00 2.52
938 942 3.869246 TCTCGCGTGTTTTTCTTCTTCTT 59.131 39.130 5.77 0.00 0.00 2.52
939 943 4.331717 TCTCGCGTGTTTTTCTTCTTCTTT 59.668 37.500 5.77 0.00 0.00 2.52
940 944 4.339429 TCGCGTGTTTTTCTTCTTCTTTG 58.661 39.130 5.77 0.00 0.00 2.77
941 945 4.093703 TCGCGTGTTTTTCTTCTTCTTTGA 59.906 37.500 5.77 0.00 0.00 2.69
942 946 4.434588 CGCGTGTTTTTCTTCTTCTTTGAG 59.565 41.667 0.00 0.00 0.00 3.02
943 947 5.569413 GCGTGTTTTTCTTCTTCTTTGAGA 58.431 37.500 0.00 0.00 0.00 3.27
944 948 6.202226 GCGTGTTTTTCTTCTTCTTTGAGAT 58.798 36.000 0.00 0.00 0.00 2.75
1199 1207 2.952359 CCCCACCCCATTCCCCTT 60.952 66.667 0.00 0.00 0.00 3.95
1444 1497 2.282674 ACACCTACGTCGGCTCCA 60.283 61.111 5.94 0.00 0.00 3.86
1459 1512 0.803768 CTCCATCGAGAAGCACACGG 60.804 60.000 0.00 0.00 38.52 4.94
1740 1793 1.336887 ACAAGCAGCAACTACGACGAT 60.337 47.619 0.00 0.00 0.00 3.73
1887 1941 1.144057 ATGGATCCCGTGAGCGTTC 59.856 57.895 9.90 0.00 36.15 3.95
1892 1946 1.310933 ATCCCGTGAGCGTTCTACGT 61.311 55.000 17.52 0.00 44.73 3.57
1908 1962 6.196724 CGTTCTACGTCTGATATTCTGGTTTC 59.803 42.308 0.00 0.00 36.74 2.78
1941 2091 5.201243 GTTTGGGGCTGGATTAGTTAGAAT 58.799 41.667 0.00 0.00 0.00 2.40
1955 2121 5.426689 AGTTAGAATTGCAGACATCTGGA 57.573 39.130 10.81 4.96 43.94 3.86
1976 2144 1.331756 GAATCGATGTGCCATGTGACC 59.668 52.381 0.00 0.00 0.00 4.02
1977 2145 0.252761 ATCGATGTGCCATGTGACCA 59.747 50.000 0.00 0.00 0.00 4.02
2034 2260 7.072202 AGAGTTGAGAATCTGGTGATATTGGAT 59.928 37.037 0.00 0.00 34.92 3.41
2062 2288 7.225397 CGAGACCGTACTTCTTGTTATTTTTC 58.775 38.462 0.00 0.00 0.00 2.29
2158 2387 4.080638 TGCAGGGTTGGTTCAAAATTTCTT 60.081 37.500 0.00 0.00 0.00 2.52
2165 2394 6.593770 GGTTGGTTCAAAATTTCTTGTCTGTT 59.406 34.615 0.00 0.00 0.00 3.16
2175 2404 0.954452 CTTGTCTGTTGAACCTGGCC 59.046 55.000 0.00 0.00 0.00 5.36
2189 2566 0.098728 CTGGCCGCATAAGGTTTTCG 59.901 55.000 0.00 0.00 0.00 3.46
2198 2577 6.358822 GCCGCATAAGGTTTTCGTAATTATTC 59.641 38.462 0.00 0.00 0.00 1.75
2200 2579 8.767085 CCGCATAAGGTTTTCGTAATTATTCTA 58.233 33.333 0.00 0.00 0.00 2.10
2289 2733 9.241317 CCATGAAGATGCACATCTAATTTAAAC 57.759 33.333 13.32 0.70 46.75 2.01
2291 2735 7.471721 TGAAGATGCACATCTAATTTAAACCG 58.528 34.615 13.32 0.00 46.75 4.44
2294 2738 6.597672 AGATGCACATCTAATTTAAACCGACA 59.402 34.615 11.40 0.00 45.69 4.35
2295 2739 5.933790 TGCACATCTAATTTAAACCGACAC 58.066 37.500 0.00 0.00 0.00 3.67
2296 2740 5.470437 TGCACATCTAATTTAAACCGACACA 59.530 36.000 0.00 0.00 0.00 3.72
2308 2756 7.499321 TTAAACCGACACAAAAGACACATAT 57.501 32.000 0.00 0.00 0.00 1.78
2310 2758 7.499321 AAACCGACACAAAAGACACATATTA 57.501 32.000 0.00 0.00 0.00 0.98
2362 2815 7.069085 GGTACACTCACTATTAACTGTGGGATA 59.931 40.741 14.25 5.75 38.01 2.59
2419 2872 4.062991 CCTTTACGTTCTTTAGGCACAGT 58.937 43.478 0.00 0.00 0.00 3.55
2424 2877 2.548067 CGTTCTTTAGGCACAGTCACCT 60.548 50.000 0.00 0.00 40.24 4.00
2425 2878 2.808543 GTTCTTTAGGCACAGTCACCTG 59.191 50.000 2.27 0.00 44.68 4.00
2498 6231 1.468914 GTTTTCTCCGAGAACATGGGC 59.531 52.381 10.48 0.00 33.26 5.36
2537 6270 4.787598 AGATTAAAAAGTGCAAGCAGTCG 58.212 39.130 2.42 0.00 0.00 4.18
2549 6282 0.540830 AGCAGTCGGAGAACTGGACT 60.541 55.000 6.21 0.00 39.69 3.85
2603 6339 2.462456 AAATGACTGAGCTCGAAGCA 57.538 45.000 9.64 5.07 45.56 3.91
2639 6375 1.795768 TGATGAAGCGAGTGGTTGAC 58.204 50.000 0.00 0.00 35.57 3.18
2711 6447 2.095718 GGTGGCAGTAAAAAGCTTCTCG 60.096 50.000 0.00 0.00 0.00 4.04
2762 6498 5.718724 CTTCCAAAGAAGGAATCAAGCTT 57.281 39.130 0.00 0.00 46.05 3.74
2772 6508 4.998051 AGGAATCAAGCTTCCAAGGTTTA 58.002 39.130 0.00 0.00 46.02 2.01
2854 6603 6.449698 TGATGTTCAAATTTGCCTTCTCTTC 58.550 36.000 13.54 7.71 0.00 2.87
2954 6703 2.553247 GGGCTAGTTTCCTGTGAAGCTT 60.553 50.000 0.00 0.00 38.73 3.74
2967 6720 1.001048 TGAAGCTTCATTGCAGTGTGC 60.001 47.619 25.16 16.98 36.67 4.57
3038 6791 6.516739 TGTAAATGGAATTGCGACCATAAA 57.483 33.333 0.00 0.00 44.79 1.40
3137 6890 4.037208 GCAGGCTAACATGAAGTTGCATAT 59.963 41.667 0.00 0.00 41.50 1.78
3308 7065 6.599244 TGATGAGTTAACTTTGCTATCCTTGG 59.401 38.462 10.02 0.00 0.00 3.61
3337 7099 0.961857 TGTGGCTGCAGCACTAATGG 60.962 55.000 37.63 0.00 44.36 3.16
3384 7150 1.272490 CTCTAGCTCGGGTGTTGTTGA 59.728 52.381 0.00 0.00 0.00 3.18
3387 7153 0.532862 AGCTCGGGTGTTGTTGACAG 60.533 55.000 0.00 0.00 39.39 3.51
3475 7241 5.913137 CAAGTATTGTTGGCATCCCTAAA 57.087 39.130 0.00 0.00 42.34 1.85
3557 7323 0.329596 AGGAGATTCGGCAAAGGCTT 59.670 50.000 0.00 0.00 40.87 4.35
3614 7381 8.139350 CCATTGTATGCAATTTCACTGTCATAT 58.861 33.333 6.26 0.00 42.91 1.78
3672 7439 4.161102 GCATAGGTGTAGTAGGAAGGGAT 58.839 47.826 0.00 0.00 0.00 3.85
3681 7448 4.561254 AGTAGGAAGGGATCACTATGGT 57.439 45.455 0.00 0.00 0.00 3.55
3890 7660 8.388656 ACTTCTCCAATTTATCCCAACTAGTA 57.611 34.615 0.00 0.00 0.00 1.82
4075 7846 5.294734 AGGCAATTCTTTTGGTCATTTGT 57.705 34.783 0.00 0.00 0.00 2.83
4084 7855 8.408043 TTCTTTTGGTCATTTGTCAGATGTAT 57.592 30.769 3.47 0.00 0.00 2.29
4085 7856 8.408043 TCTTTTGGTCATTTGTCAGATGTATT 57.592 30.769 3.47 0.00 0.00 1.89
4094 7865 7.381948 TCATTTGTCAGATGTATTTTTGTGTGC 59.618 33.333 3.47 0.00 0.00 4.57
4095 7866 5.119931 TGTCAGATGTATTTTTGTGTGCC 57.880 39.130 0.00 0.00 0.00 5.01
4097 7868 5.156355 GTCAGATGTATTTTTGTGTGCCTG 58.844 41.667 0.00 0.00 0.00 4.85
4100 7871 6.209192 TCAGATGTATTTTTGTGTGCCTGAAT 59.791 34.615 0.00 0.00 0.00 2.57
4106 7877 8.965819 TGTATTTTTGTGTGCCTGAATATACAT 58.034 29.630 0.00 0.00 0.00 2.29
4113 7884 9.489084 TTGTGTGCCTGAATATACATAGTAATC 57.511 33.333 0.00 0.00 0.00 1.75
4116 7887 8.655901 TGTGCCTGAATATACATAGTAATCCAA 58.344 33.333 0.00 0.00 0.00 3.53
4167 8105 5.637006 TTTTCTAGCTCTCTCTGTCAGAC 57.363 43.478 0.00 0.00 0.00 3.51
4173 8111 4.348486 AGCTCTCTCTGTCAGACCAAATA 58.652 43.478 0.00 0.00 0.00 1.40
4175 8113 4.400884 GCTCTCTCTGTCAGACCAAATAGA 59.599 45.833 0.00 0.00 0.00 1.98
4176 8114 5.678616 GCTCTCTCTGTCAGACCAAATAGAC 60.679 48.000 0.00 0.00 0.00 2.59
4185 8123 8.958119 TGTCAGACCAAATAGACATTATAACC 57.042 34.615 0.00 0.00 36.20 2.85
4191 8129 7.060421 ACCAAATAGACATTATAACCCCAGTG 58.940 38.462 0.00 0.00 0.00 3.66
4192 8131 6.490040 CCAAATAGACATTATAACCCCAGTGG 59.510 42.308 0.63 0.63 41.37 4.00
4197 8136 5.949952 AGACATTATAACCCCAGTGGAAAAC 59.050 40.000 11.95 0.00 38.00 2.43
4199 8138 6.260663 ACATTATAACCCCAGTGGAAAACAT 58.739 36.000 11.95 0.00 38.00 2.71
4200 8139 6.154363 ACATTATAACCCCAGTGGAAAACATG 59.846 38.462 11.95 6.47 38.00 3.21
4201 8140 2.470057 AACCCCAGTGGAAAACATGT 57.530 45.000 11.95 0.00 38.00 3.21
4235 8175 1.694133 CCAGGCAACCAAGGGCAAAA 61.694 55.000 0.00 0.00 37.17 2.44
4241 8181 1.119684 AACCAAGGGCAAAACTGTCC 58.880 50.000 0.00 0.00 0.00 4.02
4242 8182 1.106944 ACCAAGGGCAAAACTGTCCG 61.107 55.000 0.00 0.00 38.88 4.79
4243 8183 1.106944 CCAAGGGCAAAACTGTCCGT 61.107 55.000 0.00 0.00 38.88 4.69
4264 8204 4.336433 CGTCCATTTTACTCAATGCCAGAT 59.664 41.667 0.00 0.00 33.42 2.90
4283 8223 5.826737 CCAGATTATGAAGCATGGAAAGAGT 59.173 40.000 0.00 0.00 0.00 3.24
4284 8224 6.017275 CCAGATTATGAAGCATGGAAAGAGTC 60.017 42.308 0.00 0.00 0.00 3.36
4333 8273 7.093640 TGGACTATAAAGTACTACAAGGTGTGG 60.094 40.741 0.00 0.00 37.47 4.17
4844 8786 2.164338 GGCCGGGATTACTTTGAACAA 58.836 47.619 2.18 0.00 0.00 2.83
4848 8790 5.234752 GCCGGGATTACTTTGAACAAATTT 58.765 37.500 2.18 0.00 0.00 1.82
4877 8819 1.826385 AGAAGGATTTTGTCTGGGCG 58.174 50.000 0.00 0.00 0.00 6.13
4997 8942 5.418840 GCATCCTTTCCCAGTTTGATAGAAA 59.581 40.000 0.00 0.00 0.00 2.52
5007 8952 9.768215 TCCCAGTTTGATAGAAATTCCTTATTT 57.232 29.630 0.00 0.00 39.15 1.40
5052 8997 3.347216 CTTATTGCAGCCTGGTACTTGT 58.653 45.455 0.00 0.00 0.00 3.16
5233 9192 6.249035 TGGTTAAAGAATCTAAGGTTTGCG 57.751 37.500 0.00 0.00 0.00 4.85
5257 9216 7.409767 GCGAAAGAGCTTTTGAATTTGTGTATC 60.410 37.037 13.12 0.00 36.32 2.24
5282 9278 7.284261 TCGGAATCATTGTGCATATTCCTAAAA 59.716 33.333 17.84 5.98 43.41 1.52
5313 9327 0.112218 ATTGGCTACAGGTGGCACAA 59.888 50.000 20.82 10.97 44.16 3.33
5380 9394 3.425892 GCAGAGTCTAGCAAGCACAATTG 60.426 47.826 3.24 3.24 0.00 2.32
5430 9444 9.762933 GGCAGCAATAATATTAATCTTTTGGAA 57.237 29.630 0.00 0.00 0.00 3.53
5477 9501 1.875963 CGGTGGGTTAGCTTTGCTG 59.124 57.895 0.00 0.00 40.10 4.41
5491 9643 4.935885 CTTTGCTGAAGCCAAGTACTAG 57.064 45.455 7.74 0.00 38.52 2.57
5493 9645 3.876274 TGCTGAAGCCAAGTACTAGAG 57.124 47.619 0.00 0.00 41.18 2.43
5593 9771 6.382859 TGCTAGGTACATCTTCACCAGATTAA 59.617 38.462 0.00 0.00 40.67 1.40
5749 9933 9.281371 TGATTGCAATTGGATTTATTTTTGTGA 57.719 25.926 14.33 0.00 0.00 3.58
5909 10098 1.992557 AGGTTGCTAAATGGGGAGACA 59.007 47.619 0.00 0.00 0.00 3.41
5969 10164 1.004927 GGTGCGATGCTTTTACTAGCG 60.005 52.381 0.00 0.00 44.18 4.26
6007 10209 4.401925 ACTGAGTTTGGCTGCTTAATTCT 58.598 39.130 0.00 0.00 0.00 2.40
6017 10220 5.360429 TGGCTGCTTAATTCTGCAATTGATA 59.640 36.000 10.34 0.00 38.81 2.15
6020 10223 7.440255 GGCTGCTTAATTCTGCAATTGATATTT 59.560 33.333 10.34 0.00 38.81 1.40
6071 10274 3.008049 GGGCTCTTTGAAGGAGACAAGTA 59.992 47.826 12.46 0.00 40.39 2.24
6262 10465 6.663523 ACAAGAACAAGGAAAAGAAGAAGGAA 59.336 34.615 0.00 0.00 0.00 3.36
6330 12332 5.349543 CACCGTTGTTGGAGGTACTTAATAC 59.650 44.000 0.00 0.00 41.55 1.89
6342 12347 9.392259 GGAGGTACTTAATACTGCAAATAGTTT 57.608 33.333 0.00 0.00 41.55 2.66
6623 12642 8.632679 CATGGACCTGTATTATAGCAACAAATT 58.367 33.333 0.00 0.00 0.00 1.82
6658 12680 5.163364 TGGTTTTGGCACTGACATTATGTTT 60.163 36.000 0.00 0.00 0.00 2.83
6818 13046 2.857186 AATGTTGGAAAACATGGGGC 57.143 45.000 4.94 0.00 42.13 5.80
6867 13095 9.394477 CAAAGTTAGGTTTATTCTTGCTGTTAC 57.606 33.333 0.00 0.00 0.00 2.50
6939 13167 5.047188 GGAGCTGCAGAAGAAGAACTATAC 58.953 45.833 20.43 0.00 0.00 1.47
7278 13540 7.011295 CAGGTTTTGCTTGATGTTATGTGTTTT 59.989 33.333 0.00 0.00 0.00 2.43
7382 13657 3.429881 GCCAAAAATTCTGAAAAGGCGAG 59.570 43.478 0.00 0.00 0.00 5.03
7487 13779 4.527509 TTCTTGAGTTGCAGAGGACTAG 57.472 45.455 0.00 0.00 0.00 2.57
7519 13812 7.649057 ACTTGTTGCTCTTTACTGATAAAACC 58.351 34.615 0.00 0.00 29.82 3.27
7647 13946 5.809051 CCTCAATCAAGCCTTTTCTTATTGC 59.191 40.000 0.00 0.00 0.00 3.56
7668 13969 4.515567 TGCGTGTGTCATGGTTTATTTGTA 59.484 37.500 0.00 0.00 0.00 2.41
7735 14041 5.707298 GGTGAAAGATGAGGTGAAAGATGAA 59.293 40.000 0.00 0.00 0.00 2.57
7784 14090 3.375299 CCGCCTGGCTGCTTATAATATTC 59.625 47.826 17.92 0.00 0.00 1.75
8012 15277 6.416415 AGCTGAGATTTCTGATGAAGACATT 58.584 36.000 0.00 0.00 36.82 2.71
8042 15307 0.689080 ACCATGAGAGCGAGGATGGT 60.689 55.000 7.46 7.46 43.09 3.55
8130 15401 2.300967 ATCAGGAAGAGGGCGCCAA 61.301 57.895 30.85 1.34 0.00 4.52
8405 15676 3.124806 CAGTAGTCTACGTCGCTTCTGAA 59.875 47.826 12.05 0.00 31.96 3.02
8441 15718 4.092279 AGTCTGAGGATGAAGATGTGTCA 58.908 43.478 0.00 0.00 0.00 3.58
8450 15727 2.369860 TGAAGATGTGTCAGAGCCAAGT 59.630 45.455 0.00 0.00 0.00 3.16
8498 15783 1.428869 AGACTCCTTGGCTCAACTGT 58.571 50.000 0.00 0.00 0.00 3.55
8513 15799 1.388547 ACTGTCCAAACATTGCGTGT 58.611 45.000 0.00 0.00 44.84 4.49
8561 15852 8.704668 TGAGACATTTGGTTAGCTAATCTGATA 58.295 33.333 17.44 1.44 0.00 2.15
8598 15889 1.639298 GGTGCATCTCTTGTGCGTCC 61.639 60.000 0.00 0.00 45.37 4.79
8627 15918 4.623932 TGTTAGGTTGCTGAGACATTCT 57.376 40.909 0.00 0.00 0.00 2.40
8669 15960 4.666512 ACTTGTGCCTATCACCATTTCTT 58.333 39.130 0.00 0.00 45.03 2.52
8688 15979 8.886719 CATTTCTTGTTCTAATATGCTGAGACA 58.113 33.333 0.00 0.00 0.00 3.41
8695 15986 7.331934 TGTTCTAATATGCTGAGACAAGTGAAC 59.668 37.037 0.00 0.00 0.00 3.18
8707 15998 1.800586 CAAGTGAACGTGGACATCCTG 59.199 52.381 0.00 0.00 36.82 3.86
8708 15999 0.321671 AGTGAACGTGGACATCCTGG 59.678 55.000 0.00 0.00 36.82 4.45
8722 16013 5.067805 GGACATCCTGGGATTTTAATGTCAC 59.932 44.000 18.44 8.75 42.90 3.67
8723 16014 5.831103 ACATCCTGGGATTTTAATGTCACT 58.169 37.500 0.00 0.00 31.62 3.41
8738 16029 9.448438 TTTAATGTCACTAGTGATGCTTTATGT 57.552 29.630 27.54 9.04 42.18 2.29
8745 16036 7.017645 CACTAGTGATGCTTTATGTTTGTGTC 58.982 38.462 18.45 0.00 0.00 3.67
8768 16059 7.037438 GTCGTGTCAGTAAATTGGGTTCTATA 58.963 38.462 0.00 0.00 0.00 1.31
8773 16064 8.258007 TGTCAGTAAATTGGGTTCTATACTCAG 58.742 37.037 0.00 0.00 38.80 3.35
8774 16065 7.224949 GTCAGTAAATTGGGTTCTATACTCAGC 59.775 40.741 0.00 0.00 38.80 4.26
8775 16066 7.047891 CAGTAAATTGGGTTCTATACTCAGCA 58.952 38.462 0.00 0.00 38.80 4.41
8776 16067 7.716998 CAGTAAATTGGGTTCTATACTCAGCAT 59.283 37.037 0.00 0.00 38.80 3.79
8777 16068 8.934697 AGTAAATTGGGTTCTATACTCAGCATA 58.065 33.333 0.00 0.00 38.80 3.14
8778 16069 9.726438 GTAAATTGGGTTCTATACTCAGCATAT 57.274 33.333 0.00 0.00 38.80 1.78
8780 16071 8.627208 AATTGGGTTCTATACTCAGCATATTG 57.373 34.615 0.00 0.00 38.80 1.90
8781 16072 6.747414 TGGGTTCTATACTCAGCATATTGT 57.253 37.500 0.00 0.00 30.32 2.71
8867 16184 8.976471 CAGTTCTATGCTCAGTATTTCTGTATG 58.024 37.037 0.00 0.00 43.97 2.39
8870 16187 7.730084 TCTATGCTCAGTATTTCTGTATGCTT 58.270 34.615 0.00 0.00 43.97 3.91
8872 16189 6.426980 TGCTCAGTATTTCTGTATGCTTTG 57.573 37.500 0.00 0.00 43.97 2.77
8873 16190 6.172630 TGCTCAGTATTTCTGTATGCTTTGA 58.827 36.000 0.00 0.00 43.97 2.69
8906 16240 8.143193 TGGATTTTATTTACATGCTATTGCTGG 58.857 33.333 0.00 0.00 40.48 4.85
8915 16249 3.513680 TGCTATTGCTGGCTTGATTTG 57.486 42.857 0.00 0.00 40.48 2.32
8935 16269 2.224378 TGGACAGCAGCTATATCTTGGC 60.224 50.000 0.00 0.00 0.00 4.52
9036 16370 4.422073 TGGATGTTCAGGTGTCATATCC 57.578 45.455 0.00 0.00 34.60 2.59
9087 16422 5.902613 AGTTATTGGTGAATGGTGTCATG 57.097 39.130 0.00 0.00 33.18 3.07
9247 16582 2.242047 GCCTGTTAAGGGCTAGTAGC 57.758 55.000 14.09 14.09 44.67 3.58
9316 16656 7.283127 GCATCTAGGGTGAAAATCAAACATAGA 59.717 37.037 8.90 8.90 35.21 1.98
9400 16740 0.039978 CGCTCGCGGAGACAATATCT 60.040 55.000 6.13 0.00 41.91 1.98
9431 16772 6.267928 TGCATAAAGTTTACCAAAAAGGGCTA 59.732 34.615 0.00 0.00 43.89 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.508200 TCCTTCGCTTTGCTTTTCTTTTA 57.492 34.783 0.00 0.00 0.00 1.52
9 10 4.385358 TTTTCCTTCGCTTTGCTTTTCT 57.615 36.364 0.00 0.00 0.00 2.52
30 31 5.995282 TGTGATCGTACAACTTCCTGAATTT 59.005 36.000 0.00 0.00 0.00 1.82
33 34 4.594123 TGTGATCGTACAACTTCCTGAA 57.406 40.909 0.00 0.00 0.00 3.02
34 35 4.594123 TTGTGATCGTACAACTTCCTGA 57.406 40.909 0.00 0.00 35.75 3.86
35 36 4.509970 TGTTTGTGATCGTACAACTTCCTG 59.490 41.667 0.00 0.00 40.04 3.86
36 37 4.699637 TGTTTGTGATCGTACAACTTCCT 58.300 39.130 0.00 0.00 40.04 3.36
37 38 5.049680 ACATGTTTGTGATCGTACAACTTCC 60.050 40.000 0.00 0.00 40.04 3.46
53 54 5.467035 ACTAATTTGGGGACACATGTTTG 57.533 39.130 0.00 0.00 42.67 2.93
57 58 3.257873 TGCAACTAATTTGGGGACACATG 59.742 43.478 0.00 0.00 42.67 3.21
58 59 3.505386 TGCAACTAATTTGGGGACACAT 58.495 40.909 0.00 0.00 42.67 3.21
59 60 2.890311 CTGCAACTAATTTGGGGACACA 59.110 45.455 0.00 0.00 42.67 3.72
60 61 2.231235 CCTGCAACTAATTTGGGGACAC 59.769 50.000 0.00 0.00 42.67 3.67
62 63 1.824852 CCCTGCAACTAATTTGGGGAC 59.175 52.381 0.00 0.00 38.42 4.46
63 64 1.713647 TCCCTGCAACTAATTTGGGGA 59.286 47.619 0.63 0.63 41.20 4.81
64 65 2.230130 TCCCTGCAACTAATTTGGGG 57.770 50.000 3.76 0.00 37.81 4.96
66 67 5.163426 TGCAATATCCCTGCAACTAATTTGG 60.163 40.000 0.00 0.00 46.47 3.28
67 68 5.904941 TGCAATATCCCTGCAACTAATTTG 58.095 37.500 0.00 0.00 46.47 2.32
94 95 9.227490 CGGTCACATGCGATTAATTTAATTTTA 57.773 29.630 3.27 0.00 0.00 1.52
95 96 7.253950 GCGGTCACATGCGATTAATTTAATTTT 60.254 33.333 3.27 0.00 0.00 1.82
96 97 6.198216 GCGGTCACATGCGATTAATTTAATTT 59.802 34.615 3.27 0.00 0.00 1.82
97 98 5.685511 GCGGTCACATGCGATTAATTTAATT 59.314 36.000 3.27 0.00 0.00 1.40
98 99 5.212194 GCGGTCACATGCGATTAATTTAAT 58.788 37.500 1.25 1.25 0.00 1.40
99 100 4.095036 TGCGGTCACATGCGATTAATTTAA 59.905 37.500 0.00 0.00 0.00 1.52
100 101 3.623510 TGCGGTCACATGCGATTAATTTA 59.376 39.130 0.00 0.00 0.00 1.40
101 102 2.421775 TGCGGTCACATGCGATTAATTT 59.578 40.909 0.00 0.00 0.00 1.82
102 103 2.013400 TGCGGTCACATGCGATTAATT 58.987 42.857 0.00 0.00 0.00 1.40
103 104 1.662517 TGCGGTCACATGCGATTAAT 58.337 45.000 0.00 0.00 0.00 1.40
104 105 1.330213 CATGCGGTCACATGCGATTAA 59.670 47.619 0.00 0.00 40.89 1.40
105 106 0.936600 CATGCGGTCACATGCGATTA 59.063 50.000 0.00 0.00 40.89 1.75
106 107 1.723273 CATGCGGTCACATGCGATT 59.277 52.632 0.00 0.00 40.89 3.34
127 128 7.918033 TGTATTTACCATGTTTGCGATTAATGG 59.082 33.333 0.00 8.01 42.88 3.16
128 129 8.848948 TGTATTTACCATGTTTGCGATTAATG 57.151 30.769 0.00 0.00 0.00 1.90
136 137 5.980116 TGTGTGTTGTATTTACCATGTTTGC 59.020 36.000 0.00 0.00 0.00 3.68
164 165 1.398390 CTTCTAGCCGGTTTCATGTGC 59.602 52.381 1.90 0.00 0.00 4.57
189 190 2.653726 TGTGGACACATGTTTGCTCTT 58.346 42.857 5.08 0.00 36.21 2.85
239 240 9.667107 CTAAGGACTTGGATGTACTTTTCATTA 57.333 33.333 0.00 0.00 41.06 1.90
240 241 7.611855 CCTAAGGACTTGGATGTACTTTTCATT 59.388 37.037 0.00 0.00 41.06 2.57
241 242 7.112779 CCTAAGGACTTGGATGTACTTTTCAT 58.887 38.462 0.00 0.00 41.06 2.57
242 243 6.472887 CCTAAGGACTTGGATGTACTTTTCA 58.527 40.000 0.00 0.00 41.06 2.69
243 244 5.354513 GCCTAAGGACTTGGATGTACTTTTC 59.645 44.000 0.00 0.00 41.06 2.29
244 245 5.014228 AGCCTAAGGACTTGGATGTACTTTT 59.986 40.000 0.00 0.00 41.06 2.27
255 256 6.410540 ACTTCAGAATTAGCCTAAGGACTTG 58.589 40.000 0.00 0.00 0.00 3.16
282 283 7.334421 ACCGATGATGGTTAGATGTAATAATGC 59.666 37.037 0.00 0.00 39.99 3.56
300 301 4.010349 GGTTCTCCTTTGAAACCGATGAT 58.990 43.478 0.00 0.00 0.00 2.45
303 304 3.502123 TGGTTCTCCTTTGAAACCGAT 57.498 42.857 0.00 0.00 33.02 4.18
308 309 5.301805 CCTAAGCTTTGGTTCTCCTTTGAAA 59.698 40.000 17.69 0.00 34.23 2.69
312 313 4.507512 CCTCCTAAGCTTTGGTTCTCCTTT 60.508 45.833 23.59 0.00 34.23 3.11
328 329 1.295423 GCTCACAACGCCCTCCTAA 59.705 57.895 0.00 0.00 0.00 2.69
338 339 1.129437 GCTTCTTCATCGGCTCACAAC 59.871 52.381 0.00 0.00 0.00 3.32
381 382 0.518636 CTGGTCAACAAGCCACATCG 59.481 55.000 0.00 0.00 0.00 3.84
427 428 1.201704 CGACGACTGACGAATGCTTTG 60.202 52.381 6.52 0.00 45.77 2.77
438 439 2.849007 GACGACGTCGACGACTGA 59.151 61.111 41.52 0.00 43.02 3.41
467 468 1.139455 TGATTGATGCAGCGGATCTGA 59.861 47.619 16.01 0.00 45.72 3.27
493 495 1.456705 TGGTGGTTCCAGGTTTGGC 60.457 57.895 0.00 0.00 44.63 4.52
521 523 1.875514 CATAGTGATGTCATTGGCGGG 59.124 52.381 0.00 0.00 0.00 6.13
536 538 9.392259 TGTTCGGTCGATATCTATTATCATAGT 57.608 33.333 0.34 0.00 37.18 2.12
571 574 1.579698 TCGATCTTCCTACTCGACGG 58.420 55.000 0.00 0.00 36.57 4.79
578 581 3.223435 TGTCTCCCATCGATCTTCCTAC 58.777 50.000 0.00 0.00 0.00 3.18
579 582 3.595190 TGTCTCCCATCGATCTTCCTA 57.405 47.619 0.00 0.00 0.00 2.94
582 585 3.367910 GGCTATGTCTCCCATCGATCTTC 60.368 52.174 0.00 0.00 34.86 2.87
610 613 2.766313 TCCATGGTTGTGTCGAAGAAG 58.234 47.619 12.58 0.00 39.69 2.85
611 614 2.920724 TCCATGGTTGTGTCGAAGAA 57.079 45.000 12.58 0.00 39.69 2.52
622 625 3.369471 CCGTCTAGACAACATCCATGGTT 60.369 47.826 22.37 0.00 0.00 3.67
688 691 1.731709 CGATGATGTTGTTCTTGGCGA 59.268 47.619 0.00 0.00 0.00 5.54
705 708 2.301870 TGGTGAGGCTAGTTTGTTCGAT 59.698 45.455 0.00 0.00 0.00 3.59
708 711 2.552743 GGTTGGTGAGGCTAGTTTGTTC 59.447 50.000 0.00 0.00 0.00 3.18
713 716 1.498176 GGGGGTTGGTGAGGCTAGTT 61.498 60.000 0.00 0.00 0.00 2.24
719 722 4.410400 GCTCGGGGGTTGGTGAGG 62.410 72.222 0.00 0.00 0.00 3.86
819 823 4.057428 AGCGACGTGAGGCTGGAC 62.057 66.667 0.00 0.00 38.27 4.02
842 846 3.518998 CGTCATCCTCCGTCCGCT 61.519 66.667 0.00 0.00 0.00 5.52
904 908 1.880340 CGCGAGAAGAGGGTGCATC 60.880 63.158 0.00 0.00 0.00 3.91
905 909 2.185350 CGCGAGAAGAGGGTGCAT 59.815 61.111 0.00 0.00 0.00 3.96
920 924 5.569413 TCTCAAAGAAGAAGAAAAACACGC 58.431 37.500 0.00 0.00 0.00 5.34
930 934 5.411053 GGGTTGTCTCATCTCAAAGAAGAAG 59.589 44.000 0.00 0.00 0.00 2.85
932 936 4.594920 AGGGTTGTCTCATCTCAAAGAAGA 59.405 41.667 0.00 0.00 0.00 2.87
935 939 4.163427 AGAGGGTTGTCTCATCTCAAAGA 58.837 43.478 0.00 0.00 36.30 2.52
938 942 4.163427 AGAAGAGGGTTGTCTCATCTCAA 58.837 43.478 0.00 0.00 37.28 3.02
939 943 3.784178 AGAAGAGGGTTGTCTCATCTCA 58.216 45.455 0.00 0.00 37.28 3.27
940 944 3.181491 CGAGAAGAGGGTTGTCTCATCTC 60.181 52.174 13.74 13.74 46.61 2.75
941 945 2.757868 CGAGAAGAGGGTTGTCTCATCT 59.242 50.000 0.00 0.00 42.36 2.90
942 946 2.737039 GCGAGAAGAGGGTTGTCTCATC 60.737 54.545 0.00 0.00 38.14 2.92
943 947 1.205893 GCGAGAAGAGGGTTGTCTCAT 59.794 52.381 0.00 0.00 38.14 2.90
944 948 0.603569 GCGAGAAGAGGGTTGTCTCA 59.396 55.000 0.00 0.00 38.14 3.27
1160 1168 0.323629 TAAAGTGGACGGGCTGGAAG 59.676 55.000 0.00 0.00 0.00 3.46
1161 1169 0.766131 TTAAAGTGGACGGGCTGGAA 59.234 50.000 0.00 0.00 0.00 3.53
1162 1170 0.766131 TTTAAAGTGGACGGGCTGGA 59.234 50.000 0.00 0.00 0.00 3.86
1164 1172 0.879090 GGTTTAAAGTGGACGGGCTG 59.121 55.000 0.00 0.00 0.00 4.85
1165 1173 0.251033 GGGTTTAAAGTGGACGGGCT 60.251 55.000 0.00 0.00 0.00 5.19
1166 1174 1.246056 GGGGTTTAAAGTGGACGGGC 61.246 60.000 0.00 0.00 0.00 6.13
1167 1175 0.110869 TGGGGTTTAAAGTGGACGGG 59.889 55.000 0.00 0.00 0.00 5.28
1168 1176 1.241165 GTGGGGTTTAAAGTGGACGG 58.759 55.000 0.00 0.00 0.00 4.79
1169 1177 1.241165 GGTGGGGTTTAAAGTGGACG 58.759 55.000 0.00 0.00 0.00 4.79
1199 1207 3.791076 GGGATCTGGGGGAGGGGA 61.791 72.222 0.00 0.00 0.00 4.81
1444 1497 2.507102 CGCCGTGTGCTTCTCGAT 60.507 61.111 0.00 0.00 38.05 3.59
1459 1512 2.102553 GTAGACCCAGAGCGTCGC 59.897 66.667 9.80 9.80 35.33 5.19
1665 1718 3.854994 AGATTTTCTCCTCCTGGTGGATT 59.145 43.478 17.29 1.84 42.29 3.01
1740 1793 1.588082 GGTGGTCTTCCGCTCGTTA 59.412 57.895 0.00 0.00 43.20 3.18
1887 1941 4.976731 CGGAAACCAGAATATCAGACGTAG 59.023 45.833 0.00 0.00 0.00 3.51
1892 1946 3.112263 ACCCGGAAACCAGAATATCAGA 58.888 45.455 0.73 0.00 0.00 3.27
1941 2091 2.497273 TCGATTCTCCAGATGTCTGCAA 59.503 45.455 4.48 0.00 42.47 4.08
1976 2144 1.750193 ACCAACCGCACCTCATTATG 58.250 50.000 0.00 0.00 0.00 1.90
1977 2145 2.091541 CAACCAACCGCACCTCATTAT 58.908 47.619 0.00 0.00 0.00 1.28
2006 2232 8.373981 CCAATATCACCAGATTCTCAACTCTAT 58.626 37.037 0.00 0.00 35.67 1.98
2034 2260 1.338973 ACAAGAAGTACGGTCTCGCAA 59.661 47.619 2.99 0.00 40.63 4.85
2062 2288 8.467402 ACTATCAAAATCTCGTTCACAGTAAG 57.533 34.615 0.00 0.00 0.00 2.34
2073 2299 6.925718 TGCTCCAATCTACTATCAAAATCTCG 59.074 38.462 0.00 0.00 0.00 4.04
2102 2329 2.602694 CGTTTGCCCGATTAAACAACGT 60.603 45.455 0.00 0.00 36.77 3.99
2158 2387 1.227823 CGGCCAGGTTCAACAGACA 60.228 57.895 2.24 0.00 0.00 3.41
2165 2394 1.077787 CCTTATGCGGCCAGGTTCA 60.078 57.895 2.24 0.00 0.00 3.18
2238 2678 6.720112 AAACCATACTGAGCAATGCATAAT 57.280 33.333 8.35 0.00 0.00 1.28
2239 2679 6.039270 GGTAAACCATACTGAGCAATGCATAA 59.961 38.462 8.35 0.00 35.64 1.90
2240 2680 5.530915 GGTAAACCATACTGAGCAATGCATA 59.469 40.000 8.35 0.00 35.64 3.14
2241 2681 4.339247 GGTAAACCATACTGAGCAATGCAT 59.661 41.667 8.35 0.00 35.64 3.96
2242 2682 3.694072 GGTAAACCATACTGAGCAATGCA 59.306 43.478 8.35 0.00 35.64 3.96
2289 2733 9.485591 GTTTATAATATGTGTCTTTTGTGTCGG 57.514 33.333 0.00 0.00 0.00 4.79
2310 2758 9.886132 CAACTACAACCCTAATAGTCAGTTTAT 57.114 33.333 0.00 0.00 0.00 1.40
2362 2815 5.944809 ATATACTCCTACTGGGTGTACCT 57.055 43.478 0.44 0.00 43.90 3.08
2400 2853 4.053295 GTGACTGTGCCTAAAGAACGTAA 58.947 43.478 0.00 0.00 0.00 3.18
2419 2872 0.955428 GCGCTTGGTGATTCAGGTGA 60.955 55.000 0.00 0.00 0.00 4.02
2424 2877 1.753930 ATCATGCGCTTGGTGATTCA 58.246 45.000 21.59 2.48 28.62 2.57
2425 2878 2.613595 TGTATCATGCGCTTGGTGATTC 59.386 45.455 21.59 15.83 34.62 2.52
2498 6231 0.891373 TCTCAGGCTCCGACTTCTTG 59.109 55.000 0.00 0.00 0.00 3.02
2575 6308 5.296780 TCGAGCTCAGTCATTTTGAACTTTT 59.703 36.000 15.40 0.00 0.00 2.27
2585 6318 1.547820 TCTGCTTCGAGCTCAGTCATT 59.452 47.619 15.40 0.00 42.97 2.57
2591 6324 1.001293 ACAACATCTGCTTCGAGCTCA 59.999 47.619 15.40 0.00 42.97 4.26
2603 6339 2.865119 TCATGAGTGCCACAACATCT 57.135 45.000 0.00 0.00 0.00 2.90
2711 6447 5.116680 GTCGATATACAGTTGCACGTAATCC 59.883 44.000 0.00 0.00 0.00 3.01
2757 6493 7.597288 AAACTATGTTAAACCTTGGAAGCTT 57.403 32.000 0.00 0.00 0.00 3.74
2785 6523 4.371624 TGGACATCTCAAACTGGTGAAT 57.628 40.909 0.00 0.00 0.00 2.57
2788 6526 3.678289 TCATGGACATCTCAAACTGGTG 58.322 45.455 0.00 0.00 0.00 4.17
2998 6751 5.843673 TTTACAAAACTGACCTGCAATCA 57.156 34.783 0.70 0.70 0.00 2.57
3068 6821 1.022451 CACATGGCTGGCAATTTGGC 61.022 55.000 15.53 15.53 44.03 4.52
3137 6890 2.972348 CCCATAGGTAGCCCTTCACTA 58.028 52.381 0.00 0.00 42.66 2.74
3308 7065 2.669391 GCTGCAGCCACAATAGACAAAC 60.669 50.000 28.76 0.00 34.31 2.93
3337 7099 6.954944 TGCAGTTGTAAGAAGTGAACATTAC 58.045 36.000 0.00 0.00 0.00 1.89
3357 7123 1.034838 ACCCGAGCTAGAGACTGCAG 61.035 60.000 13.48 13.48 0.00 4.41
3384 7150 1.072965 CAGCCCAAGAAAGGAGACTGT 59.927 52.381 0.00 0.00 42.68 3.55
3387 7153 1.349357 ACTCAGCCCAAGAAAGGAGAC 59.651 52.381 0.00 0.00 0.00 3.36
3547 7313 1.200948 CTCACAGCTAAAGCCTTTGCC 59.799 52.381 0.00 0.00 43.38 4.52
3574 7340 7.790027 TGCATACAATGGCATTTAATAGGTTT 58.210 30.769 10.65 0.00 34.58 3.27
3614 7381 4.526970 AGAAAACAGGCTGAACTCTTCAA 58.473 39.130 23.66 0.00 39.58 2.69
3672 7439 7.026429 CCTGAGAGGAAACACACCATAGTGA 62.026 48.000 0.00 0.00 41.70 3.41
3681 7448 2.409064 TACCCCTGAGAGGAAACACA 57.591 50.000 0.00 0.00 37.67 3.72
3890 7660 3.893813 AGCCAAGAAACAGCTTCAATTCT 59.106 39.130 0.00 0.00 36.40 2.40
4075 7846 5.069318 TCAGGCACACAAAAATACATCTGA 58.931 37.500 0.00 0.00 0.00 3.27
4084 7855 8.574251 ACTATGTATATTCAGGCACACAAAAA 57.426 30.769 0.00 0.00 0.00 1.94
4085 7856 9.674068 TTACTATGTATATTCAGGCACACAAAA 57.326 29.630 0.00 0.00 0.00 2.44
4149 8087 2.997980 TGGTCTGACAGAGAGAGCTAG 58.002 52.381 5.10 0.00 38.51 3.42
4152 8090 3.608316 ATTTGGTCTGACAGAGAGAGC 57.392 47.619 5.10 0.00 38.25 4.09
4167 8105 6.490040 CCACTGGGGTTATAATGTCTATTTGG 59.510 42.308 0.00 0.00 0.00 3.28
4173 8111 5.789574 TTTCCACTGGGGTTATAATGTCT 57.210 39.130 0.00 0.00 38.11 3.41
4175 8113 5.646215 TGTTTTCCACTGGGGTTATAATGT 58.354 37.500 0.00 0.00 38.11 2.71
4176 8114 6.154363 ACATGTTTTCCACTGGGGTTATAATG 59.846 38.462 0.00 0.00 38.11 1.90
4185 8123 4.512484 ACAAAAACATGTTTTCCACTGGG 58.488 39.130 31.10 18.20 41.45 4.45
4197 8136 6.259608 TGCCTGGACAAATAAACAAAAACATG 59.740 34.615 0.00 0.00 0.00 3.21
4199 8138 5.734720 TGCCTGGACAAATAAACAAAAACA 58.265 33.333 0.00 0.00 0.00 2.83
4200 8139 6.457663 GGTTGCCTGGACAAATAAACAAAAAC 60.458 38.462 0.00 0.00 0.00 2.43
4201 8140 5.586643 GGTTGCCTGGACAAATAAACAAAAA 59.413 36.000 0.00 0.00 0.00 1.94
4235 8175 4.345859 TTGAGTAAAATGGACGGACAGT 57.654 40.909 0.00 0.00 0.00 3.55
4241 8181 3.689161 TCTGGCATTGAGTAAAATGGACG 59.311 43.478 0.00 0.00 37.89 4.79
4242 8182 5.841957 ATCTGGCATTGAGTAAAATGGAC 57.158 39.130 0.00 0.00 37.89 4.02
4243 8183 7.779326 TCATAATCTGGCATTGAGTAAAATGGA 59.221 33.333 0.00 0.00 37.89 3.41
4283 8223 1.699634 ACTTGCACTTGCTCCTAAGGA 59.300 47.619 2.33 0.00 42.66 3.36
4284 8224 2.191128 ACTTGCACTTGCTCCTAAGG 57.809 50.000 2.33 0.00 42.66 2.69
4333 8273 3.961480 AACTGAATAAGGGGCAAAAGC 57.039 42.857 0.00 0.00 0.00 3.51
4765 8705 5.760743 AGTCAGAACTCTTTTAAGACCAAGC 59.239 40.000 0.00 0.00 0.00 4.01
4766 8706 6.203723 CCAGTCAGAACTCTTTTAAGACCAAG 59.796 42.308 0.00 0.00 31.71 3.61
4877 8819 3.350833 AGCTTCACCATCTTTGTCATCC 58.649 45.455 0.00 0.00 0.00 3.51
4905 8850 4.732285 TCTTTTTCTTGCTGAACGCTAG 57.268 40.909 0.00 0.00 41.91 3.42
4910 8855 6.017605 TCTCAGTGATCTTTTTCTTGCTGAAC 60.018 38.462 0.00 0.00 33.88 3.18
4929 8874 1.558756 CAGCCAATCCTTCCTCTCAGT 59.441 52.381 0.00 0.00 0.00 3.41
4958 8903 6.986231 GGAAAGGATGCAAATATTTAACCTGG 59.014 38.462 0.00 0.00 0.00 4.45
5028 8973 3.112263 AGTACCAGGCTGCAATAAGGTA 58.888 45.455 9.56 0.82 0.00 3.08
5052 8997 2.198406 CGTTTCTCACGTTGGTCAAGA 58.802 47.619 0.00 0.00 44.49 3.02
5233 9192 7.061094 CCGATACACAAATTCAAAAGCTCTTTC 59.939 37.037 0.00 0.00 31.45 2.62
5380 9394 4.273318 ACAAAATCCTGAGCCATTCCTAC 58.727 43.478 0.00 0.00 0.00 3.18
5430 9444 2.082836 TACCAAATTGGCCACGGGGT 62.083 55.000 12.67 18.41 42.67 4.95
5477 9501 4.097286 CAGAGTCCTCTAGTACTTGGCTTC 59.903 50.000 0.00 3.37 37.98 3.86
5489 9641 5.091552 ACCCATTACAAACAGAGTCCTCTA 58.908 41.667 0.00 0.00 37.98 2.43
5491 9643 4.287766 ACCCATTACAAACAGAGTCCTC 57.712 45.455 0.00 0.00 0.00 3.71
5493 9645 4.652822 AGAACCCATTACAAACAGAGTCC 58.347 43.478 0.00 0.00 0.00 3.85
5593 9771 6.040504 GGAAAAATTAAGCGGGTGATAGGATT 59.959 38.462 0.00 0.00 0.00 3.01
5749 9933 9.806448 TGAACATAACATGGCATATTATAGGTT 57.194 29.630 10.48 11.19 33.60 3.50
6038 10241 0.398318 AAAGAGCCCTGTCAGGTGAC 59.602 55.000 17.85 6.89 44.97 3.67
6071 10274 1.102978 GTCACACCAGTTGCCTTTGT 58.897 50.000 0.00 0.00 0.00 2.83
6262 10465 3.555966 CTTGTCCTTGTCCTTGTCCTTT 58.444 45.455 0.00 0.00 0.00 3.11
6330 12332 7.396540 ACCCAAGAGAATAAACTATTTGCAG 57.603 36.000 0.00 0.00 0.00 4.41
6342 12347 7.723616 TCAAAACATCTGAAACCCAAGAGAATA 59.276 33.333 0.00 0.00 0.00 1.75
6623 12642 4.464597 AGTGCCAAAACCACAAGTAAAAGA 59.535 37.500 0.00 0.00 35.69 2.52
6658 12680 9.530633 GAAGAACTCTTGAAGTACTGAAAAGTA 57.469 33.333 0.00 0.00 37.17 2.24
6706 12729 4.454504 GTCAACATGTACCTTCCGTTTGAT 59.545 41.667 0.00 0.00 0.00 2.57
6777 12934 4.430137 ACTTTCTGCACAGCATACATTG 57.570 40.909 0.00 0.00 38.13 2.82
6867 13095 7.775093 TGTTATTGACTATGATTTCCCCAGAAG 59.225 37.037 0.00 0.00 32.35 2.85
6923 13151 6.819146 GGGAAAGGTGTATAGTTCTTCTTCTG 59.181 42.308 0.00 0.00 0.00 3.02
6926 13154 6.697641 TGGGAAAGGTGTATAGTTCTTCTT 57.302 37.500 0.00 0.00 0.00 2.52
7278 13540 6.936335 TCAAAATCAATGTGAGAAGAGCAGTA 59.064 34.615 0.00 0.00 0.00 2.74
7382 13657 1.378646 GTTGCTGGCTTAGGGTCCC 60.379 63.158 0.00 0.00 0.00 4.46
7434 13712 4.252971 TGTGTTAGTCTGTACCTTCTGC 57.747 45.455 0.00 0.00 0.00 4.26
7487 13779 5.638234 CAGTAAAGAGCAACAAGTACTACCC 59.362 44.000 0.00 0.00 0.00 3.69
7519 13812 4.335416 TCCCAGCCTAGAAAAGTTTGATG 58.665 43.478 0.00 0.00 0.00 3.07
7647 13946 5.086058 GCTACAAATAAACCATGACACACG 58.914 41.667 0.00 0.00 0.00 4.49
7735 14041 1.882989 GCTCAGCCACTTCGTCCTCT 61.883 60.000 0.00 0.00 0.00 3.69
7753 14059 3.435186 GCCAGGCGGTCTTTCAGC 61.435 66.667 0.00 0.00 36.55 4.26
7784 14090 4.499183 GGTTCTGGAGAGTTGTCACTATG 58.501 47.826 0.00 0.00 31.22 2.23
7923 15188 3.075148 CGTTCCTCCCTTTCTTTCCTTC 58.925 50.000 0.00 0.00 0.00 3.46
7976 15241 7.288621 TCAGAAATCTCAGCTAAGGATGACATA 59.711 37.037 0.00 0.00 34.00 2.29
8012 15277 2.934932 TCATGGTGGGGCTCTGCA 60.935 61.111 0.00 0.00 0.00 4.41
8130 15401 1.558756 CCTCATCCCTTTGCTCTGAGT 59.441 52.381 6.53 0.00 33.16 3.41
8192 15463 1.619977 GGAGAAGGAGCACTGAGGGTA 60.620 57.143 0.00 0.00 0.00 3.69
8405 15676 3.181477 CCTCAGACTCATCATCTTCGCTT 60.181 47.826 0.00 0.00 0.00 4.68
8441 15718 1.827344 TCATCATCGTCACTTGGCTCT 59.173 47.619 0.00 0.00 0.00 4.09
8450 15727 2.365582 TCGGAGAAGTCATCATCGTCA 58.634 47.619 0.00 0.00 0.00 4.35
8513 15799 1.613925 GACACTAGAGTCACTGCACCA 59.386 52.381 14.58 0.00 38.40 4.17
8561 15852 2.756760 CACCTGAGCAAAGCACCAATAT 59.243 45.455 0.00 0.00 0.00 1.28
8598 15889 6.149308 TGTCTCAGCAACCTAACATAACATTG 59.851 38.462 0.00 0.00 0.00 2.82
8627 15918 3.258372 AGTCTCAAACCGATTAGCTCACA 59.742 43.478 0.00 0.00 0.00 3.58
8669 15960 6.935167 TCACTTGTCTCAGCATATTAGAACA 58.065 36.000 0.00 0.00 0.00 3.18
8688 15979 1.270839 CCAGGATGTCCACGTTCACTT 60.271 52.381 1.30 0.00 38.89 3.16
8695 15986 2.128771 AAAATCCCAGGATGTCCACG 57.871 50.000 0.00 0.00 38.89 4.94
8707 15998 6.543831 AGCATCACTAGTGACATTAAAATCCC 59.456 38.462 27.41 3.37 43.11 3.85
8708 15999 7.559590 AGCATCACTAGTGACATTAAAATCC 57.440 36.000 27.41 0.00 43.11 3.01
8722 16013 6.128553 ACGACACAAACATAAAGCATCACTAG 60.129 38.462 0.00 0.00 0.00 2.57
8723 16014 5.699001 ACGACACAAACATAAAGCATCACTA 59.301 36.000 0.00 0.00 0.00 2.74
8738 16029 4.035792 CCCAATTTACTGACACGACACAAA 59.964 41.667 0.00 0.00 0.00 2.83
8745 16036 7.039882 AGTATAGAACCCAATTTACTGACACG 58.960 38.462 0.00 0.00 0.00 4.49
8773 16064 3.319972 ACCTCAATGGATGCACAATATGC 59.680 43.478 0.00 0.00 46.85 3.14
8774 16065 5.068067 TCAACCTCAATGGATGCACAATATG 59.932 40.000 0.00 0.00 38.36 1.78
8775 16066 5.202765 TCAACCTCAATGGATGCACAATAT 58.797 37.500 0.00 0.00 38.36 1.28
8776 16067 4.598022 TCAACCTCAATGGATGCACAATA 58.402 39.130 0.00 0.00 38.36 1.90
8777 16068 3.433343 TCAACCTCAATGGATGCACAAT 58.567 40.909 0.00 0.00 38.36 2.71
8778 16069 2.874014 TCAACCTCAATGGATGCACAA 58.126 42.857 0.00 0.00 38.36 3.33
8779 16070 2.583024 TCAACCTCAATGGATGCACA 57.417 45.000 0.00 0.00 38.36 4.57
8780 16071 3.181483 GGATTCAACCTCAATGGATGCAC 60.181 47.826 0.00 0.00 38.36 4.57
8781 16072 3.025978 GGATTCAACCTCAATGGATGCA 58.974 45.455 0.00 0.00 38.36 3.96
8872 16189 9.971922 AGCATGTAAATAAAATCCAATAGCTTC 57.028 29.630 0.00 0.00 0.00 3.86
8906 16240 0.886563 AGCTGCTGTCCAAATCAAGC 59.113 50.000 0.00 0.00 0.00 4.01
8915 16249 2.038295 AGCCAAGATATAGCTGCTGTCC 59.962 50.000 13.43 1.53 34.99 4.02
8935 16269 9.774742 GGTTTAAATAGCTGAACTAAATGACAG 57.225 33.333 0.00 0.00 33.57 3.51
8980 16314 8.958506 TCCAAACACTCTACTAGACTAAGAATC 58.041 37.037 0.00 0.00 0.00 2.52
9036 16370 4.430137 ACAGAAATTGTGCACATAGCTG 57.570 40.909 22.39 24.22 45.94 4.24
9246 16581 1.984066 AGTGATCGGGAGTACTAGGC 58.016 55.000 0.00 0.00 0.00 3.93
9247 16582 3.288964 ACAAGTGATCGGGAGTACTAGG 58.711 50.000 0.00 0.00 0.00 3.02
9248 16583 3.315749 GGACAAGTGATCGGGAGTACTAG 59.684 52.174 0.00 0.00 0.00 2.57
9249 16584 3.285484 GGACAAGTGATCGGGAGTACTA 58.715 50.000 0.00 0.00 0.00 1.82
9250 16585 2.100989 GGACAAGTGATCGGGAGTACT 58.899 52.381 0.00 0.00 0.00 2.73
9251 16586 1.822990 TGGACAAGTGATCGGGAGTAC 59.177 52.381 0.00 0.00 0.00 2.73
9252 16587 1.822990 GTGGACAAGTGATCGGGAGTA 59.177 52.381 0.00 0.00 0.00 2.59
9253 16588 0.608640 GTGGACAAGTGATCGGGAGT 59.391 55.000 0.00 0.00 0.00 3.85
9316 16656 6.070656 CCCAACAACACCCATATTATCTGAT 58.929 40.000 0.00 0.00 0.00 2.90
9400 16740 9.959749 CTTTTTGGTAAACTTTATGCAACTAGA 57.040 29.630 0.00 0.00 0.00 2.43
9431 16772 6.899393 TTTGCAGACAGATGAATTTTACCT 57.101 33.333 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.