Multiple sequence alignment - TraesCS6B01G295200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G295200 chr6B 100.000 4545 0 0 1 4545 530126392 530130936 0.000000e+00 8394.0
1 TraesCS6B01G295200 chr6B 100.000 279 0 0 4787 5065 530131178 530131456 2.700000e-142 516.0
2 TraesCS6B01G295200 chr6B 95.385 130 3 3 3007 3134 648098490 648098618 2.390000e-48 204.0
3 TraesCS6B01G295200 chr6B 93.600 125 8 0 3013 3137 164882910 164883034 2.410000e-43 187.0
4 TraesCS6B01G295200 chr6D 90.584 2347 81 58 755 3022 349990422 349988137 0.000000e+00 2981.0
5 TraesCS6B01G295200 chr6D 94.759 935 40 2 3134 4060 349988140 349987207 0.000000e+00 1447.0
6 TraesCS6B01G295200 chr6D 93.197 441 16 4 4061 4488 349987177 349986738 1.990000e-178 636.0
7 TraesCS6B01G295200 chr6D 92.283 311 13 2 4 309 349994994 349994690 1.010000e-116 431.0
8 TraesCS6B01G295200 chr6D 91.667 276 16 3 304 578 349990692 349990423 4.790000e-100 375.0
9 TraesCS6B01G295200 chr6D 98.214 56 0 1 4489 4544 421855334 421855388 4.170000e-16 97.1
10 TraesCS6B01G295200 chr6A 94.086 930 43 4 3134 4060 494442126 494443046 0.000000e+00 1402.0
11 TraesCS6B01G295200 chr6A 95.938 714 24 3 2313 3022 494441417 494442129 0.000000e+00 1153.0
12 TraesCS6B01G295200 chr6A 84.985 1019 78 40 711 1710 494439739 494440701 0.000000e+00 965.0
13 TraesCS6B01G295200 chr6A 90.283 566 22 15 1770 2327 494440854 494441394 0.000000e+00 710.0
14 TraesCS6B01G295200 chr6A 93.424 441 15 6 4061 4488 494443076 494443515 4.280000e-180 641.0
15 TraesCS6B01G295200 chr6A 84.259 432 41 12 289 709 494423999 494424414 3.670000e-106 396.0
16 TraesCS6B01G295200 chr6A 90.984 244 17 1 5 243 494423756 494423999 1.760000e-84 324.0
17 TraesCS6B01G295200 chr6A 86.290 248 16 3 4819 5065 494443766 494443996 2.340000e-63 254.0
18 TraesCS6B01G295200 chr1B 83.481 339 42 6 1373 1710 654080962 654080637 2.290000e-78 303.0
19 TraesCS6B01G295200 chr1B 98.246 57 0 1 4488 4544 684201751 684201696 1.160000e-16 99.0
20 TraesCS6B01G295200 chr5D 93.464 153 8 1 2573 2725 528717428 528717278 5.100000e-55 226.0
21 TraesCS6B01G295200 chr5B 93.464 153 8 1 2573 2725 665744619 665744469 5.100000e-55 226.0
22 TraesCS6B01G295200 chr5B 95.798 119 5 0 3019 3137 387753184 387753302 5.180000e-45 193.0
23 TraesCS6B01G295200 chr5B 94.355 124 5 2 3021 3143 38365240 38365118 6.690000e-44 189.0
24 TraesCS6B01G295200 chr5B 98.246 57 0 1 4488 4544 356970245 356970300 1.160000e-16 99.0
25 TraesCS6B01G295200 chr5A 93.464 153 8 1 2573 2725 656872435 656872285 5.100000e-55 226.0
26 TraesCS6B01G295200 chr5A 92.424 66 1 4 4479 4543 51604514 51604576 1.940000e-14 91.6
27 TraesCS6B01G295200 chr2A 91.071 168 12 2 2561 2725 79316172 79316005 1.840000e-54 224.0
28 TraesCS6B01G295200 chr7D 91.875 160 12 1 2570 2728 34756862 34757021 6.600000e-54 222.0
29 TraesCS6B01G295200 chr7D 93.651 63 2 2 4482 4543 198988971 198988910 5.400000e-15 93.5
30 TraesCS6B01G295200 chr3D 91.824 159 9 3 2570 2725 315480582 315480425 8.540000e-53 219.0
31 TraesCS6B01G295200 chr3D 98.214 56 0 1 4490 4545 8128107 8128161 4.170000e-16 97.1
32 TraesCS6B01G295200 chr2D 90.476 168 13 2 2561 2725 79056334 79056167 8.540000e-53 219.0
33 TraesCS6B01G295200 chr2D 96.970 66 1 1 4479 4544 189528006 189528070 5.360000e-20 110.0
34 TraesCS6B01G295200 chr2D 98.214 56 0 1 4490 4545 648256464 648256410 4.170000e-16 97.1
35 TraesCS6B01G295200 chr7B 97.500 120 3 0 3018 3137 434925904 434926023 6.650000e-49 206.0
36 TraesCS6B01G295200 chr7B 93.750 128 6 2 3011 3137 733479614 733479740 1.860000e-44 191.0
37 TraesCS6B01G295200 chr4B 97.479 119 3 0 3019 3137 636708078 636708196 2.390000e-48 204.0
38 TraesCS6B01G295200 chr4B 96.610 118 4 0 3020 3137 122562395 122562278 4.000000e-46 196.0
39 TraesCS6B01G295200 chr7A 94.355 124 7 0 3020 3143 56560347 56560224 1.860000e-44 191.0
40 TraesCS6B01G295200 chrUn 98.214 56 0 1 4490 4545 128516330 128516276 4.170000e-16 97.1
41 TraesCS6B01G295200 chrUn 98.182 55 0 1 4490 4544 19647231 19647284 1.500000e-15 95.3
42 TraesCS6B01G295200 chrUn 98.182 55 0 1 4490 4544 73486481 73486534 1.500000e-15 95.3
43 TraesCS6B01G295200 chrUn 98.182 55 0 1 4490 4544 102887872 102887925 1.500000e-15 95.3
44 TraesCS6B01G295200 chrUn 98.182 55 0 1 4490 4544 104559234 104559181 1.500000e-15 95.3
45 TraesCS6B01G295200 chrUn 98.182 55 0 1 4490 4544 154681553 154681606 1.500000e-15 95.3
46 TraesCS6B01G295200 chrUn 98.182 55 0 1 4490 4544 254470503 254470450 1.500000e-15 95.3
47 TraesCS6B01G295200 chrUn 98.182 55 0 1 4490 4544 262619324 262619271 1.500000e-15 95.3
48 TraesCS6B01G295200 chrUn 98.148 54 0 1 4490 4543 64149776 64149828 5.400000e-15 93.5
49 TraesCS6B01G295200 chr4D 98.214 56 0 1 4490 4545 36413287 36413233 4.170000e-16 97.1
50 TraesCS6B01G295200 chr4D 98.214 56 0 1 4489 4544 407364181 407364127 4.170000e-16 97.1
51 TraesCS6B01G295200 chr1D 98.214 56 0 1 4490 4545 43298834 43298888 4.170000e-16 97.1
52 TraesCS6B01G295200 chr1D 98.214 56 0 1 4490 4545 441002324 441002270 4.170000e-16 97.1
53 TraesCS6B01G295200 chr1D 98.214 56 0 1 4489 4544 471188864 471188918 4.170000e-16 97.1
54 TraesCS6B01G295200 chr1D 93.548 62 2 2 4484 4544 259088087 259088027 1.940000e-14 91.6
55 TraesCS6B01G295200 chr1A 92.537 67 2 2 4479 4543 276575197 276575262 5.400000e-15 93.5
56 TraesCS6B01G295200 chr2B 91.176 68 4 2 4479 4545 101490575 101490641 1.940000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G295200 chr6B 530126392 530131456 5064 False 4455.000000 8394 100.000000 1 5065 2 chr6B.!!$F3 5064
1 TraesCS6B01G295200 chr6D 349986738 349994994 8256 True 1174.000000 2981 92.498000 4 4488 5 chr6D.!!$R1 4484
2 TraesCS6B01G295200 chr6A 494439739 494443996 4257 False 854.166667 1402 90.834333 711 5065 6 chr6A.!!$F2 4354
3 TraesCS6B01G295200 chr6A 494423756 494424414 658 False 360.000000 396 87.621500 5 709 2 chr6A.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 273 0.109342 CAAACCTGAGAGCCACCAGT 59.891 55.0 0.0 0.0 0.0 4.00 F
1220 5263 0.322187 AGGTTCGACGGGGATTTTGG 60.322 55.0 0.0 0.0 0.0 3.28 F
2344 6555 0.031994 GGCGTTGCATTTCTTGTGGT 59.968 50.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 5655 0.035317 TCAGCGAGCCAACAGACAAT 59.965 50.0 0.00 0.0 0.00 2.71 R
3020 7238 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
4294 8565 0.257328 TGTGGTCAGACCCAAGCAAA 59.743 50.0 17.59 0.0 37.50 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 65 2.838202 ACACGACAAAGACCCATATCCT 59.162 45.455 0.00 0.00 0.00 3.24
164 170 0.397941 ATCACCACACCACCAGTCAG 59.602 55.000 0.00 0.00 0.00 3.51
217 223 2.483106 CACAAACCTGACATGAGCTCAG 59.517 50.000 22.96 15.84 35.78 3.35
227 233 5.742063 TGACATGAGCTCAGAAATCATCTT 58.258 37.500 22.96 0.00 35.73 2.40
267 273 0.109342 CAAACCTGAGAGCCACCAGT 59.891 55.000 0.00 0.00 0.00 4.00
284 290 0.392998 AGTGGCCGGAGCAAACATAG 60.393 55.000 5.05 0.00 42.56 2.23
373 4382 4.275810 AGATTCTCCACCACCATTTGATG 58.724 43.478 0.00 0.00 0.00 3.07
384 4393 7.607223 CCACCACCATTTGATGATTAAACATTT 59.393 33.333 0.00 0.00 0.00 2.32
454 4463 4.996758 GGCTTGCACATAAGTTTCCATTTT 59.003 37.500 0.00 0.00 0.00 1.82
494 4504 3.719924 TGCTCCTTTGATGTTGCTTTTG 58.280 40.909 0.00 0.00 0.00 2.44
495 4505 3.132646 TGCTCCTTTGATGTTGCTTTTGT 59.867 39.130 0.00 0.00 0.00 2.83
504 4514 4.889409 TGATGTTGCTTTTGTTCTCCTTCT 59.111 37.500 0.00 0.00 0.00 2.85
557 4567 4.065423 TCAAGTTGCGCTTAATCTTTCG 57.935 40.909 9.73 0.00 35.27 3.46
582 4592 1.032014 TTTGGGTGCTTGTCTTCTGC 58.968 50.000 0.00 0.00 0.00 4.26
588 4598 0.657312 TGCTTGTCTTCTGCGTTGTG 59.343 50.000 0.00 0.00 0.00 3.33
595 4613 2.544267 GTCTTCTGCGTTGTGTTAAGCT 59.456 45.455 0.00 0.00 0.00 3.74
608 4626 3.001736 GTGTTAAGCTGATTCCGAGCATC 59.998 47.826 0.00 0.00 39.05 3.91
610 4628 0.531532 AAGCTGATTCCGAGCATCCG 60.532 55.000 0.00 0.00 39.05 4.18
624 4642 4.686091 CGAGCATCCGTGTATCATGTAATT 59.314 41.667 0.00 0.00 0.00 1.40
627 4645 4.754618 GCATCCGTGTATCATGTAATTCCA 59.245 41.667 0.00 0.00 0.00 3.53
632 4650 5.356426 CGTGTATCATGTAATTCCAGACCA 58.644 41.667 0.00 0.00 0.00 4.02
635 4653 6.480320 GTGTATCATGTAATTCCAGACCAGTC 59.520 42.308 0.00 0.00 0.00 3.51
655 4674 7.923344 ACCAGTCGATGACTTCATAATCTAAAG 59.077 37.037 0.00 0.00 41.37 1.85
656 4675 7.095857 CCAGTCGATGACTTCATAATCTAAAGC 60.096 40.741 0.00 0.00 41.37 3.51
664 4683 4.081322 TCATAATCTAAAGCCGGGTTCC 57.919 45.455 21.02 0.00 0.00 3.62
676 4695 2.742204 GCCGGGTTCCTATTGAGTCTTC 60.742 54.545 2.18 0.00 0.00 2.87
677 4696 2.500098 CCGGGTTCCTATTGAGTCTTCA 59.500 50.000 0.00 0.00 0.00 3.02
678 4697 3.134804 CCGGGTTCCTATTGAGTCTTCAT 59.865 47.826 0.00 0.00 32.27 2.57
679 4698 4.384208 CCGGGTTCCTATTGAGTCTTCATT 60.384 45.833 0.00 0.00 32.27 2.57
680 4699 4.811557 CGGGTTCCTATTGAGTCTTCATTC 59.188 45.833 0.00 0.00 32.27 2.67
681 4700 5.395768 CGGGTTCCTATTGAGTCTTCATTCT 60.396 44.000 0.00 0.00 32.27 2.40
682 4701 6.183360 CGGGTTCCTATTGAGTCTTCATTCTA 60.183 42.308 0.00 0.00 32.27 2.10
879 4898 1.225745 GATCAGAAAACCGCGTGCG 60.226 57.895 4.92 7.38 39.44 5.34
1026 5059 0.886490 CTCCGTGCTGCATATTCCCC 60.886 60.000 5.27 0.00 0.00 4.81
1062 5096 1.821332 CGATTCTTCCAGGCCAGGC 60.821 63.158 9.89 1.26 0.00 4.85
1123 5157 2.261729 AGGGTTCTTCCTTCTCCACTC 58.738 52.381 0.00 0.00 32.13 3.51
1127 5161 3.558109 GGTTCTTCCTTCTCCACTCCTTG 60.558 52.174 0.00 0.00 0.00 3.61
1131 5165 5.094387 TCTTCCTTCTCCACTCCTTGTATT 58.906 41.667 0.00 0.00 0.00 1.89
1151 5194 2.126965 GTCACACGAGTCCGACGG 60.127 66.667 7.84 7.84 39.50 4.79
1180 5223 0.898320 CTTGAGGGAGAAGGCGAAGA 59.102 55.000 0.00 0.00 0.00 2.87
1181 5224 0.898320 TTGAGGGAGAAGGCGAAGAG 59.102 55.000 0.00 0.00 0.00 2.85
1182 5225 0.972983 TGAGGGAGAAGGCGAAGAGG 60.973 60.000 0.00 0.00 0.00 3.69
1183 5226 0.684805 GAGGGAGAAGGCGAAGAGGA 60.685 60.000 0.00 0.00 0.00 3.71
1220 5263 0.322187 AGGTTCGACGGGGATTTTGG 60.322 55.000 0.00 0.00 0.00 3.28
1257 5300 3.983494 CAGCGATCGGCCGATCCT 61.983 66.667 45.91 39.81 45.95 3.24
1327 5370 1.405526 GCAACAGCGAGATGAGGGTAA 60.406 52.381 0.00 0.00 0.00 2.85
1341 5384 1.219724 AGGGTAAGGCGATCTTCCCTA 59.780 52.381 18.13 0.00 44.23 3.53
1369 5433 7.628234 AGATTCTTTTGATGCTCCTCTAAGAA 58.372 34.615 0.00 0.00 34.32 2.52
1370 5434 7.769970 AGATTCTTTTGATGCTCCTCTAAGAAG 59.230 37.037 0.00 0.00 33.84 2.85
1372 5436 7.482169 TCTTTTGATGCTCCTCTAAGAAGTA 57.518 36.000 0.00 0.00 0.00 2.24
1373 5437 7.907389 TCTTTTGATGCTCCTCTAAGAAGTAA 58.093 34.615 0.00 0.00 0.00 2.24
1374 5438 8.037758 TCTTTTGATGCTCCTCTAAGAAGTAAG 58.962 37.037 0.00 0.00 0.00 2.34
1375 5439 7.482169 TTTGATGCTCCTCTAAGAAGTAAGA 57.518 36.000 0.00 0.00 0.00 2.10
1376 5440 7.482169 TTGATGCTCCTCTAAGAAGTAAGAA 57.518 36.000 0.00 0.00 0.00 2.52
1377 5441 7.106439 TGATGCTCCTCTAAGAAGTAAGAAG 57.894 40.000 0.00 0.00 0.00 2.85
1378 5442 6.665680 TGATGCTCCTCTAAGAAGTAAGAAGT 59.334 38.462 0.00 0.00 0.00 3.01
1379 5443 6.274157 TGCTCCTCTAAGAAGTAAGAAGTG 57.726 41.667 0.00 0.00 0.00 3.16
1380 5444 5.106442 GCTCCTCTAAGAAGTAAGAAGTGC 58.894 45.833 0.00 0.00 0.00 4.40
1381 5445 5.656480 CTCCTCTAAGAAGTAAGAAGTGCC 58.344 45.833 0.00 0.00 0.00 5.01
1382 5446 4.466726 TCCTCTAAGAAGTAAGAAGTGCCC 59.533 45.833 0.00 0.00 0.00 5.36
1383 5447 4.425520 CTCTAAGAAGTAAGAAGTGCCCG 58.574 47.826 0.00 0.00 0.00 6.13
1384 5448 3.830755 TCTAAGAAGTAAGAAGTGCCCGT 59.169 43.478 0.00 0.00 0.00 5.28
1385 5449 2.457366 AGAAGTAAGAAGTGCCCGTG 57.543 50.000 0.00 0.00 0.00 4.94
1386 5450 1.692519 AGAAGTAAGAAGTGCCCGTGT 59.307 47.619 0.00 0.00 0.00 4.49
1390 5454 1.263217 GTAAGAAGTGCCCGTGTTGTG 59.737 52.381 0.00 0.00 0.00 3.33
1393 5457 1.078072 AAGTGCCCGTGTTGTGTCA 60.078 52.632 0.00 0.00 0.00 3.58
1415 5479 2.691011 TGTTGGTTCTTTTTCTTCGGGG 59.309 45.455 0.00 0.00 0.00 5.73
1561 5626 8.488651 CTACGATTGGTAGGTTATTCAGTTTT 57.511 34.615 0.00 0.00 44.08 2.43
1562 5627 7.754851 ACGATTGGTAGGTTATTCAGTTTTT 57.245 32.000 0.00 0.00 0.00 1.94
1563 5628 7.590279 ACGATTGGTAGGTTATTCAGTTTTTG 58.410 34.615 0.00 0.00 0.00 2.44
1564 5629 7.229907 ACGATTGGTAGGTTATTCAGTTTTTGT 59.770 33.333 0.00 0.00 0.00 2.83
1565 5630 8.079809 CGATTGGTAGGTTATTCAGTTTTTGTT 58.920 33.333 0.00 0.00 0.00 2.83
1568 5633 8.934507 TGGTAGGTTATTCAGTTTTTGTTTTG 57.065 30.769 0.00 0.00 0.00 2.44
1596 5661 6.579666 TTTTGCTATCAGCTGAAATTGTCT 57.420 33.333 22.50 4.57 42.97 3.41
1597 5662 5.556355 TTGCTATCAGCTGAAATTGTCTG 57.444 39.130 22.50 5.97 42.97 3.51
1599 5664 5.005740 TGCTATCAGCTGAAATTGTCTGTT 58.994 37.500 22.50 2.10 42.97 3.16
1600 5665 5.106436 TGCTATCAGCTGAAATTGTCTGTTG 60.106 40.000 22.50 2.89 42.97 3.33
1601 5666 4.778534 ATCAGCTGAAATTGTCTGTTGG 57.221 40.909 22.50 0.00 37.13 3.77
1602 5667 2.294233 TCAGCTGAAATTGTCTGTTGGC 59.706 45.455 15.67 0.00 37.13 4.52
1603 5668 2.295349 CAGCTGAAATTGTCTGTTGGCT 59.705 45.455 8.42 0.00 34.21 4.75
1604 5669 2.555757 AGCTGAAATTGTCTGTTGGCTC 59.444 45.455 0.00 0.00 0.00 4.70
1605 5670 2.666619 GCTGAAATTGTCTGTTGGCTCG 60.667 50.000 0.00 0.00 0.00 5.03
1606 5671 1.266718 TGAAATTGTCTGTTGGCTCGC 59.733 47.619 0.00 0.00 0.00 5.03
1607 5672 1.537202 GAAATTGTCTGTTGGCTCGCT 59.463 47.619 0.00 0.00 0.00 4.93
1608 5673 0.877071 AATTGTCTGTTGGCTCGCTG 59.123 50.000 0.00 0.00 0.00 5.18
1609 5674 0.035317 ATTGTCTGTTGGCTCGCTGA 59.965 50.000 0.00 0.00 0.00 4.26
1610 5675 0.035317 TTGTCTGTTGGCTCGCTGAT 59.965 50.000 0.00 0.00 0.00 2.90
1611 5676 0.671472 TGTCTGTTGGCTCGCTGATG 60.671 55.000 0.00 0.00 0.00 3.07
1612 5677 1.742880 TCTGTTGGCTCGCTGATGC 60.743 57.895 0.00 0.00 0.00 3.91
1613 5678 1.744368 CTGTTGGCTCGCTGATGCT 60.744 57.895 0.00 0.00 36.97 3.79
1614 5679 0.460811 CTGTTGGCTCGCTGATGCTA 60.461 55.000 0.00 0.00 36.97 3.49
1652 5717 6.245408 TCAAGGCCTTACTGATGTGTTAAAT 58.755 36.000 20.00 0.00 0.00 1.40
1653 5718 7.398829 TCAAGGCCTTACTGATGTGTTAAATA 58.601 34.615 20.00 0.00 0.00 1.40
1654 5719 7.885922 TCAAGGCCTTACTGATGTGTTAAATAA 59.114 33.333 20.00 0.00 0.00 1.40
1655 5720 8.519526 CAAGGCCTTACTGATGTGTTAAATAAA 58.480 33.333 20.00 0.00 0.00 1.40
1677 5742 1.992557 TGTTAATGAGGGGAGGCAAGT 59.007 47.619 0.00 0.00 0.00 3.16
1679 5744 0.918983 TAATGAGGGGAGGCAAGTGG 59.081 55.000 0.00 0.00 0.00 4.00
1683 5748 2.081585 GAGGGGAGGCAAGTGGGTTT 62.082 60.000 0.00 0.00 0.00 3.27
1685 5750 1.185618 GGGGAGGCAAGTGGGTTTTC 61.186 60.000 0.00 0.00 0.00 2.29
1696 5761 1.002142 GTGGGTTTTCGCTGTTGGTAC 60.002 52.381 0.00 0.00 0.00 3.34
1710 5775 7.286087 TCGCTGTTGGTACTAGAGGAATAAATA 59.714 37.037 0.00 0.00 0.00 1.40
1716 5802 8.716674 TGGTACTAGAGGAATAAATACGGAAT 57.283 34.615 0.00 0.00 0.00 3.01
1726 5812 1.300927 AATACGGAATGGGGGTTGGA 58.699 50.000 0.00 0.00 0.00 3.53
1752 5839 8.956533 AACTTTTGCTTATGTAAATGTGGTTT 57.043 26.923 10.01 0.00 36.70 3.27
1761 5848 4.930963 TGTAAATGTGGTTTGCTGAACAG 58.069 39.130 6.01 0.00 40.13 3.16
1768 5855 4.065088 GTGGTTTGCTGAACAGTCTGATA 58.935 43.478 6.91 0.00 40.13 2.15
1829 6002 5.835113 TCCTTGCAATTTAGGCAGTAATC 57.165 39.130 0.00 0.00 43.05 1.75
1835 6008 8.462589 TTGCAATTTAGGCAGTAATCATCATA 57.537 30.769 0.00 0.00 43.05 2.15
1842 6015 5.303971 AGGCAGTAATCATCATACAAGAGC 58.696 41.667 0.00 0.00 0.00 4.09
1847 6020 6.539826 CAGTAATCATCATACAAGAGCCAACA 59.460 38.462 0.00 0.00 0.00 3.33
1860 6034 3.072476 AGAGCCAACAAGTAACCTGCTAA 59.928 43.478 0.00 0.00 0.00 3.09
2134 6308 3.944055 ACTGGACAGATGTATATCCGC 57.056 47.619 6.29 0.00 33.63 5.54
2172 6346 5.297029 GCTGAGGTATTTATGGTTGACCTTC 59.703 44.000 1.34 0.00 40.65 3.46
2266 6440 9.657419 ATTATTTCCATTCAAACTGTCCATTTC 57.343 29.630 0.00 0.00 0.00 2.17
2332 6543 3.740321 TGAAATCTTGATTTTGGCGTTGC 59.260 39.130 9.58 0.00 0.00 4.17
2344 6555 0.031994 GGCGTTGCATTTCTTGTGGT 59.968 50.000 0.00 0.00 0.00 4.16
2505 6720 9.778993 CATAGTTCAATTTCCTACATCTTGTTG 57.221 33.333 0.00 0.00 0.00 3.33
2528 6743 5.063880 GGAACTGGAGAAAGCTTTCAGTTA 58.936 41.667 34.39 19.25 42.95 2.24
2582 6797 1.639108 TGCTGACTAGTACTCCCTCCA 59.361 52.381 0.00 0.00 0.00 3.86
2669 6884 5.638657 ACAAACACACTAAAACGTGTCTACA 59.361 36.000 0.00 0.00 45.74 2.74
2732 6950 4.389077 GTGAACGGAGGAAGTAGAAACATG 59.611 45.833 0.00 0.00 0.00 3.21
2822 7040 5.178096 TCTTATGGACAAAGATTGCCAGA 57.822 39.130 10.44 5.20 39.17 3.86
3018 7236 5.648526 TGGAACTGTGCAAAGTTGTTAAGTA 59.351 36.000 26.95 2.54 40.48 2.24
3019 7237 6.183360 TGGAACTGTGCAAAGTTGTTAAGTAG 60.183 38.462 26.95 0.00 40.48 2.57
3020 7238 6.183360 GGAACTGTGCAAAGTTGTTAAGTAGT 60.183 38.462 26.95 0.00 40.48 2.73
3021 7239 7.011669 GGAACTGTGCAAAGTTGTTAAGTAGTA 59.988 37.037 26.95 0.00 40.48 1.82
3022 7240 7.242914 ACTGTGCAAAGTTGTTAAGTAGTAC 57.757 36.000 2.82 0.00 0.00 2.73
3023 7241 7.046033 ACTGTGCAAAGTTGTTAAGTAGTACT 58.954 34.615 2.82 0.00 0.00 2.73
3024 7242 7.224167 ACTGTGCAAAGTTGTTAAGTAGTACTC 59.776 37.037 2.82 0.00 0.00 2.59
3025 7243 6.480981 TGTGCAAAGTTGTTAAGTAGTACTCC 59.519 38.462 2.58 0.00 0.00 3.85
3026 7244 5.993441 TGCAAAGTTGTTAAGTAGTACTCCC 59.007 40.000 2.58 0.00 0.00 4.30
3027 7245 6.183361 TGCAAAGTTGTTAAGTAGTACTCCCT 60.183 38.462 2.58 0.00 0.00 4.20
3028 7246 6.368243 GCAAAGTTGTTAAGTAGTACTCCCTC 59.632 42.308 2.58 0.00 0.00 4.30
3029 7247 6.602410 AAGTTGTTAAGTAGTACTCCCTCC 57.398 41.667 2.58 0.00 0.00 4.30
3030 7248 4.704057 AGTTGTTAAGTAGTACTCCCTCCG 59.296 45.833 2.58 0.00 0.00 4.63
3031 7249 4.307032 TGTTAAGTAGTACTCCCTCCGT 57.693 45.455 2.58 0.00 0.00 4.69
3032 7250 4.265073 TGTTAAGTAGTACTCCCTCCGTC 58.735 47.826 2.58 0.00 0.00 4.79
3033 7251 2.433662 AAGTAGTACTCCCTCCGTCC 57.566 55.000 2.58 0.00 0.00 4.79
3034 7252 0.179936 AGTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
3035 7253 0.817229 GTAGTACTCCCTCCGTCCGG 60.817 65.000 0.00 0.00 0.00 5.14
3036 7254 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3037 7255 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3038 7256 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
3039 7257 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
3040 7258 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
3041 7259 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
3042 7260 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
3043 7261 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
3044 7262 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3045 7263 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3046 7264 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3047 7265 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3048 7266 1.403249 CCGTCCGGAATTACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
3049 7267 1.916000 CGTCCGGAATTACTTGTCGTC 59.084 52.381 5.23 0.00 0.00 4.20
3050 7268 2.669113 CGTCCGGAATTACTTGTCGTCA 60.669 50.000 5.23 0.00 0.00 4.35
3051 7269 3.319755 GTCCGGAATTACTTGTCGTCAA 58.680 45.455 5.23 0.00 0.00 3.18
3052 7270 3.742369 GTCCGGAATTACTTGTCGTCAAA 59.258 43.478 5.23 0.00 32.87 2.69
3053 7271 4.211794 GTCCGGAATTACTTGTCGTCAAAA 59.788 41.667 5.23 0.00 32.87 2.44
3054 7272 4.998672 TCCGGAATTACTTGTCGTCAAAAT 59.001 37.500 0.00 0.00 32.87 1.82
3055 7273 5.086058 CCGGAATTACTTGTCGTCAAAATG 58.914 41.667 0.00 0.00 32.87 2.32
3056 7274 5.086058 CGGAATTACTTGTCGTCAAAATGG 58.914 41.667 0.00 0.00 32.87 3.16
3057 7275 5.106869 CGGAATTACTTGTCGTCAAAATGGA 60.107 40.000 0.00 0.00 32.87 3.41
3058 7276 6.403200 CGGAATTACTTGTCGTCAAAATGGAT 60.403 38.462 0.00 0.00 32.87 3.41
3059 7277 7.201574 CGGAATTACTTGTCGTCAAAATGGATA 60.202 37.037 0.00 0.00 32.87 2.59
3060 7278 8.455682 GGAATTACTTGTCGTCAAAATGGATAA 58.544 33.333 0.00 0.00 32.87 1.75
3061 7279 9.834628 GAATTACTTGTCGTCAAAATGGATAAA 57.165 29.630 0.00 0.00 32.87 1.40
3065 7283 8.519492 ACTTGTCGTCAAAATGGATAAAAATG 57.481 30.769 0.00 0.00 32.87 2.32
3066 7284 7.598493 ACTTGTCGTCAAAATGGATAAAAATGG 59.402 33.333 0.00 0.00 32.87 3.16
3067 7285 7.220741 TGTCGTCAAAATGGATAAAAATGGA 57.779 32.000 0.00 0.00 0.00 3.41
3068 7286 7.835822 TGTCGTCAAAATGGATAAAAATGGAT 58.164 30.769 0.00 0.00 0.00 3.41
3069 7287 7.758980 TGTCGTCAAAATGGATAAAAATGGATG 59.241 33.333 0.00 0.00 0.00 3.51
3070 7288 7.759433 GTCGTCAAAATGGATAAAAATGGATGT 59.241 33.333 0.00 0.00 0.00 3.06
3071 7289 8.961634 TCGTCAAAATGGATAAAAATGGATGTA 58.038 29.630 0.00 0.00 0.00 2.29
3072 7290 9.748708 CGTCAAAATGGATAAAAATGGATGTAT 57.251 29.630 0.00 0.00 0.00 2.29
3108 7326 8.738645 AAAACATCTAGGTACATCCATTTCTC 57.261 34.615 0.00 0.00 39.02 2.87
3109 7327 6.426646 ACATCTAGGTACATCCATTTCTCC 57.573 41.667 0.00 0.00 39.02 3.71
3110 7328 5.011125 ACATCTAGGTACATCCATTTCTCCG 59.989 44.000 0.00 0.00 39.02 4.63
3111 7329 4.800023 TCTAGGTACATCCATTTCTCCGA 58.200 43.478 0.00 0.00 39.02 4.55
3112 7330 3.821421 AGGTACATCCATTTCTCCGAC 57.179 47.619 0.00 0.00 39.02 4.79
3113 7331 3.104512 AGGTACATCCATTTCTCCGACA 58.895 45.455 0.00 0.00 39.02 4.35
3114 7332 3.517901 AGGTACATCCATTTCTCCGACAA 59.482 43.478 0.00 0.00 39.02 3.18
3115 7333 3.871594 GGTACATCCATTTCTCCGACAAG 59.128 47.826 0.00 0.00 35.97 3.16
3116 7334 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3117 7335 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3118 7336 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
3119 7337 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
3120 7338 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
3121 7339 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
3122 7340 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
3123 7341 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3124 7342 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3125 7343 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
3126 7344 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
3127 7345 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3128 7346 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3129 7347 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3130 7348 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3131 7349 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3132 7350 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3141 7359 0.893447 CGGACGGAGGGAGTAAGTTT 59.107 55.000 0.00 0.00 0.00 2.66
3242 7460 2.104451 ACAGCTAGATCATGCCCTTCAG 59.896 50.000 0.00 0.00 0.00 3.02
3260 7478 5.177696 CCTTCAGTCAAAACCTTAGTCTTCG 59.822 44.000 0.00 0.00 0.00 3.79
3303 7521 5.068215 TGGAAGACAATTGTAGGGGAAAA 57.932 39.130 11.95 0.00 0.00 2.29
3307 7525 4.324267 AGACAATTGTAGGGGAAAACTCG 58.676 43.478 11.95 0.00 0.00 4.18
3392 7610 1.302832 CCACCCCACTCAGTTGAGC 60.303 63.158 8.99 0.00 45.79 4.26
3407 7625 3.128349 GTTGAGCTGGACTAACGTTTGA 58.872 45.455 16.59 0.00 0.00 2.69
3424 7642 7.264373 ACGTTTGATGTCTTTCTCTTGAATT 57.736 32.000 0.00 0.00 31.56 2.17
3452 7670 4.621886 GTGTGTAAAGTTGGACTCTCGATC 59.378 45.833 0.00 0.00 0.00 3.69
3724 7945 8.995027 TGCCAATAAACAAGATATGGTAAGAT 57.005 30.769 0.00 0.00 0.00 2.40
3758 7979 6.442952 TGACCACTATTTTAAATGTGCACAC 58.557 36.000 24.37 3.72 0.00 3.82
3768 7989 2.900122 ATGTGCACACGCTTGAATAC 57.100 45.000 24.37 0.00 39.64 1.89
3770 7991 1.530720 TGTGCACACGCTTGAATACAG 59.469 47.619 17.42 0.00 39.64 2.74
3778 7999 3.994392 CACGCTTGAATACAGTGGTAAGT 59.006 43.478 0.00 0.00 32.19 2.24
3784 8005 7.519002 GCTTGAATACAGTGGTAAGTTAACAG 58.481 38.462 8.61 0.00 32.19 3.16
3791 8012 5.820947 ACAGTGGTAAGTTAACAGAACTTGG 59.179 40.000 8.61 0.00 40.38 3.61
3796 8017 3.577805 AGTTAACAGAACTTGGCCACT 57.422 42.857 3.88 0.00 0.00 4.00
3802 8023 7.722285 AGTTAACAGAACTTGGCCACTATTTTA 59.278 33.333 3.88 0.00 0.00 1.52
3804 8025 6.327279 ACAGAACTTGGCCACTATTTTAAC 57.673 37.500 3.88 0.00 0.00 2.01
3831 8052 4.063689 ACATGAGAAGTCTCTGCTTGTTG 58.936 43.478 9.63 0.28 43.25 3.33
3861 8082 4.141711 TGGACTGTAGGTGAATGAATAGGC 60.142 45.833 0.00 0.00 0.00 3.93
3864 8085 4.647853 ACTGTAGGTGAATGAATAGGCGTA 59.352 41.667 0.00 0.00 0.00 4.42
3866 8087 5.979993 TGTAGGTGAATGAATAGGCGTAAA 58.020 37.500 0.00 0.00 0.00 2.01
3912 8133 4.410099 TCGTTCTCCACTCCTTTTACCTA 58.590 43.478 0.00 0.00 0.00 3.08
3929 8150 9.273016 CTTTTACCTATGGGTTGTGATAGTATG 57.727 37.037 5.89 0.00 44.73 2.39
3968 8197 2.875317 GCTCCTGCCTAACATAGCTTTC 59.125 50.000 0.00 0.00 35.38 2.62
3972 8201 4.019321 TCCTGCCTAACATAGCTTTCTTGT 60.019 41.667 0.00 0.00 0.00 3.16
4093 8351 1.001406 ACTGGCTGTCAAGTACTCTGC 59.999 52.381 0.00 0.00 0.00 4.26
4210 8468 4.990526 ACCTTTGGATGAAAGATGACACT 58.009 39.130 0.00 0.00 43.50 3.55
4215 8473 5.082251 TGGATGAAAGATGACACTCAGAG 57.918 43.478 0.00 0.00 0.00 3.35
4239 8497 7.967908 AGAGAAAGAAAAAGATAGTGGTGAGA 58.032 34.615 0.00 0.00 0.00 3.27
4257 8528 3.068024 TGAGAAACACATCCAGGTTTTGC 59.932 43.478 0.00 0.00 37.35 3.68
4311 8582 0.550914 ACTTTGCTTGGGTCTGACCA 59.449 50.000 26.94 11.45 41.02 4.02
4402 8673 8.391075 TGTAAAATTTCCTGTGAGTTTAGAGG 57.609 34.615 0.00 0.00 32.60 3.69
4493 8764 7.915508 TCTGTAAGATAATTTTGGCACATACG 58.084 34.615 0.00 0.00 38.67 3.06
4495 8766 8.445275 TGTAAGATAATTTTGGCACATACGAT 57.555 30.769 0.00 0.00 39.30 3.73
4496 8767 8.556194 TGTAAGATAATTTTGGCACATACGATC 58.444 33.333 0.00 0.00 39.30 3.69
4497 8768 6.560253 AGATAATTTTGGCACATACGATCC 57.440 37.500 0.00 0.00 39.30 3.36
4498 8769 3.691049 AATTTTGGCACATACGATCCG 57.309 42.857 0.00 0.00 39.30 4.18
4499 8770 2.102070 TTTTGGCACATACGATCCGT 57.898 45.000 0.00 0.00 44.35 4.69
4500 8771 2.963548 TTTGGCACATACGATCCGTA 57.036 45.000 1.58 1.58 46.28 4.02
4515 8786 7.741027 ACGATCCGTATCTAGACAAATCTAA 57.259 36.000 0.00 0.00 38.73 2.10
4516 8787 7.808672 ACGATCCGTATCTAGACAAATCTAAG 58.191 38.462 0.00 0.00 38.73 2.18
4517 8788 7.660617 ACGATCCGTATCTAGACAAATCTAAGA 59.339 37.037 0.00 0.00 38.73 2.10
4518 8789 7.958567 CGATCCGTATCTAGACAAATCTAAGAC 59.041 40.741 0.00 0.00 36.98 3.01
4519 8790 8.693120 ATCCGTATCTAGACAAATCTAAGACA 57.307 34.615 0.00 0.00 36.98 3.41
4520 8791 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
4521 8792 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
4522 8793 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
4530 8801 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
4531 8802 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4532 8803 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4533 8804 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4534 8805 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
4535 8806 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4536 8807 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4537 8808 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4538 8809 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4539 8810 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4540 8811 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4541 8812 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
4542 8813 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4543 8814 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4544 8815 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
4813 9084 1.533625 TTTTTGCGGGGACTCTCATG 58.466 50.000 0.00 0.00 0.00 3.07
4814 9085 0.400213 TTTTGCGGGGACTCTCATGT 59.600 50.000 0.00 0.00 0.00 3.21
4815 9086 0.321564 TTTGCGGGGACTCTCATGTG 60.322 55.000 0.00 0.00 0.00 3.21
4816 9087 2.184020 TTGCGGGGACTCTCATGTGG 62.184 60.000 0.00 0.00 0.00 4.17
4817 9088 2.187946 CGGGGACTCTCATGTGGC 59.812 66.667 0.00 0.00 0.00 5.01
4867 9139 4.720046 TGTTTTGGTGGATTGCTAGTGTA 58.280 39.130 0.00 0.00 0.00 2.90
4868 9140 4.759693 TGTTTTGGTGGATTGCTAGTGTAG 59.240 41.667 0.00 0.00 0.00 2.74
4869 9141 4.634012 TTTGGTGGATTGCTAGTGTAGT 57.366 40.909 0.00 0.00 0.00 2.73
4870 9142 3.610040 TGGTGGATTGCTAGTGTAGTG 57.390 47.619 0.00 0.00 0.00 2.74
4871 9143 2.903784 TGGTGGATTGCTAGTGTAGTGT 59.096 45.455 0.00 0.00 0.00 3.55
4872 9144 3.326588 TGGTGGATTGCTAGTGTAGTGTT 59.673 43.478 0.00 0.00 0.00 3.32
4873 9145 4.528987 TGGTGGATTGCTAGTGTAGTGTTA 59.471 41.667 0.00 0.00 0.00 2.41
4874 9146 4.868734 GGTGGATTGCTAGTGTAGTGTTAC 59.131 45.833 0.00 0.00 0.00 2.50
4875 9147 5.475719 GTGGATTGCTAGTGTAGTGTTACA 58.524 41.667 0.00 0.00 37.45 2.41
4876 9148 5.577164 GTGGATTGCTAGTGTAGTGTTACAG 59.423 44.000 0.00 0.00 40.33 2.74
4877 9149 4.567159 GGATTGCTAGTGTAGTGTTACAGC 59.433 45.833 0.00 0.00 40.33 4.40
4878 9150 4.866508 TTGCTAGTGTAGTGTTACAGCT 57.133 40.909 0.00 0.00 40.33 4.24
4879 9151 4.436242 TGCTAGTGTAGTGTTACAGCTC 57.564 45.455 0.00 0.00 40.33 4.09
4880 9152 3.119955 TGCTAGTGTAGTGTTACAGCTCG 60.120 47.826 0.00 0.00 40.33 5.03
4881 9153 3.119919 GCTAGTGTAGTGTTACAGCTCGT 60.120 47.826 0.00 0.00 40.33 4.18
4882 9154 3.284323 AGTGTAGTGTTACAGCTCGTG 57.716 47.619 0.00 0.00 40.33 4.35
4893 9165 1.103803 CAGCTCGTGTCCCTAGCTTA 58.896 55.000 0.00 0.00 43.97 3.09
4915 9187 9.264719 GCTTATGCTTTTTATAAAATCAGGCAT 57.735 29.630 25.70 25.70 35.97 4.40
4917 9189 6.907206 TGCTTTTTATAAAATCAGGCATGC 57.093 33.333 9.90 9.90 0.00 4.06
4936 9208 5.124457 GCATGCATGGTCTTCTCTCTAAAAA 59.876 40.000 27.34 0.00 0.00 1.94
4943 9215 9.837525 CATGGTCTTCTCTCTAAAAAGAAAATG 57.162 33.333 0.00 0.00 31.45 2.32
4997 9269 1.632589 AAAGGGTGGATGCCTTTGTC 58.367 50.000 0.00 0.00 33.29 3.18
5004 9276 0.958822 GGATGCCTTTGTCGGTTTGT 59.041 50.000 0.00 0.00 0.00 2.83
5006 9278 2.393764 GATGCCTTTGTCGGTTTGTTG 58.606 47.619 0.00 0.00 0.00 3.33
5007 9279 0.179124 TGCCTTTGTCGGTTTGTTGC 60.179 50.000 0.00 0.00 0.00 4.17
5018 9290 1.333435 GGTTTGTTGCAGGAACGTACG 60.333 52.381 15.01 15.01 37.38 3.67
5041 9313 3.986996 TCTTCTCTGAATCATGCACCA 57.013 42.857 0.00 0.00 0.00 4.17
5043 9315 4.005650 TCTTCTCTGAATCATGCACCAAC 58.994 43.478 0.00 0.00 0.00 3.77
5061 9333 7.823310 TGCACCAACAATTTCATATTAGCAAAT 59.177 29.630 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.809684 GAGTTAGTGGACTGGCAACC 58.190 55.000 3.80 3.80 0.00 3.77
59 65 6.656902 TCTTGGACCTCTCTCGTAATAACTA 58.343 40.000 0.00 0.00 0.00 2.24
164 170 2.607038 GGGAGAACATGCGTTTTTGACC 60.607 50.000 0.00 0.00 34.75 4.02
166 172 1.611491 GGGGAGAACATGCGTTTTTGA 59.389 47.619 0.00 0.00 34.75 2.69
227 233 7.357303 GTTTGGCGTGATCTTCTTAAAGTTAA 58.643 34.615 0.00 0.00 33.95 2.01
267 273 1.077787 CCTATGTTTGCTCCGGCCA 60.078 57.895 2.24 0.00 37.74 5.36
284 290 2.994186 TACTTCCCGAATTGTAGCCC 57.006 50.000 0.00 0.00 0.00 5.19
338 4347 4.704057 GTGGAGAATCTTTCATGCTCCTTT 59.296 41.667 9.62 0.00 44.23 3.11
384 4393 9.378551 GCATCATTAATACTCCGGTTATGAATA 57.621 33.333 0.00 0.00 0.00 1.75
395 4404 4.278419 GGTGTTGGGCATCATTAATACTCC 59.722 45.833 0.00 0.00 0.00 3.85
396 4405 4.278419 GGGTGTTGGGCATCATTAATACTC 59.722 45.833 0.00 0.00 0.00 2.59
454 4463 1.466025 AACCGGTCGCTTGAGTGGTA 61.466 55.000 8.04 0.00 31.75 3.25
494 4504 2.531206 CGAACATCGGAGAAGGAGAAC 58.469 52.381 0.00 0.00 43.58 3.01
495 4505 2.941453 CGAACATCGGAGAAGGAGAA 57.059 50.000 0.00 0.00 43.58 2.87
519 4529 3.136443 ACTTGAAGATGTGTCACCCTTCA 59.864 43.478 23.18 23.18 42.00 3.02
579 4589 3.482786 GAATCAGCTTAACACAACGCAG 58.517 45.455 0.00 0.00 0.00 5.18
582 4592 2.734606 TCGGAATCAGCTTAACACAACG 59.265 45.455 0.00 0.00 0.00 4.10
588 4598 2.545946 GGATGCTCGGAATCAGCTTAAC 59.454 50.000 0.00 0.00 37.79 2.01
595 4613 1.107945 TACACGGATGCTCGGAATCA 58.892 50.000 0.00 0.00 0.00 2.57
608 4626 4.750098 GGTCTGGAATTACATGATACACGG 59.250 45.833 0.00 0.00 0.00 4.94
610 4628 6.349300 ACTGGTCTGGAATTACATGATACAC 58.651 40.000 0.00 0.00 0.00 2.90
624 4642 1.819288 GAAGTCATCGACTGGTCTGGA 59.181 52.381 0.00 0.00 42.59 3.86
627 4645 5.596361 AGATTATGAAGTCATCGACTGGTCT 59.404 40.000 0.00 0.00 42.59 3.85
632 4650 6.926272 GGCTTTAGATTATGAAGTCATCGACT 59.074 38.462 0.00 0.00 45.64 4.18
635 4653 5.119279 CCGGCTTTAGATTATGAAGTCATCG 59.881 44.000 0.00 0.00 37.76 3.84
655 4674 0.831307 AGACTCAATAGGAACCCGGC 59.169 55.000 0.00 0.00 0.00 6.13
656 4675 2.500098 TGAAGACTCAATAGGAACCCGG 59.500 50.000 0.00 0.00 0.00 5.73
677 4696 9.872684 ACAGTCCCATGATCATTATTTTAGAAT 57.127 29.630 5.16 0.00 0.00 2.40
678 4697 9.699410 AACAGTCCCATGATCATTATTTTAGAA 57.301 29.630 5.16 0.00 0.00 2.10
679 4698 9.699410 AAACAGTCCCATGATCATTATTTTAGA 57.301 29.630 5.16 0.00 0.00 2.10
760 4779 3.699894 CGAGGAGGTGCCAGCACT 61.700 66.667 21.19 8.37 45.52 4.40
1123 5157 2.259618 CTCGTGTGACGGAATACAAGG 58.740 52.381 0.00 0.00 42.81 3.61
1127 5161 1.792993 CGGACTCGTGTGACGGAATAC 60.793 57.143 0.00 0.00 42.81 1.89
1131 5165 2.281002 TCGGACTCGTGTGACGGA 60.281 61.111 10.22 0.00 42.81 4.69
1151 5194 2.504244 CCCTCAAGTCGTCGTCGC 60.504 66.667 0.00 0.00 36.96 5.19
1180 5223 2.352032 CGAGTCCGCCTTCCTTCCT 61.352 63.158 0.00 0.00 0.00 3.36
1181 5224 2.184579 CGAGTCCGCCTTCCTTCC 59.815 66.667 0.00 0.00 0.00 3.46
1182 5225 1.139947 CTCGAGTCCGCCTTCCTTC 59.860 63.158 3.62 0.00 35.37 3.46
1183 5226 1.304217 TCTCGAGTCCGCCTTCCTT 60.304 57.895 13.13 0.00 35.37 3.36
1327 5370 5.337788 AGAATCTAATAGGGAAGATCGCCT 58.662 41.667 7.46 0.00 31.20 5.52
1341 5384 9.558396 CTTAGAGGAGCATCAAAAGAATCTAAT 57.442 33.333 0.00 0.00 36.25 1.73
1369 5433 1.140252 ACAACACGGGCACTTCTTACT 59.860 47.619 0.00 0.00 0.00 2.24
1370 5434 1.263217 CACAACACGGGCACTTCTTAC 59.737 52.381 0.00 0.00 0.00 2.34
1372 5436 0.393808 ACACAACACGGGCACTTCTT 60.394 50.000 0.00 0.00 0.00 2.52
1373 5437 0.814010 GACACAACACGGGCACTTCT 60.814 55.000 0.00 0.00 0.00 2.85
1374 5438 1.092921 TGACACAACACGGGCACTTC 61.093 55.000 0.00 0.00 0.00 3.01
1375 5439 0.465460 ATGACACAACACGGGCACTT 60.465 50.000 0.00 0.00 0.00 3.16
1376 5440 1.148273 ATGACACAACACGGGCACT 59.852 52.632 0.00 0.00 0.00 4.40
1377 5441 1.282570 CATGACACAACACGGGCAC 59.717 57.895 0.00 0.00 0.00 5.01
1378 5442 0.749818 AACATGACACAACACGGGCA 60.750 50.000 0.00 0.00 0.00 5.36
1379 5443 0.317770 CAACATGACACAACACGGGC 60.318 55.000 0.00 0.00 0.00 6.13
1380 5444 0.310543 CCAACATGACACAACACGGG 59.689 55.000 0.00 0.00 0.00 5.28
1381 5445 1.021202 ACCAACATGACACAACACGG 58.979 50.000 0.00 0.00 0.00 4.94
1382 5446 2.354510 AGAACCAACATGACACAACACG 59.645 45.455 0.00 0.00 0.00 4.49
1383 5447 4.370364 AAGAACCAACATGACACAACAC 57.630 40.909 0.00 0.00 0.00 3.32
1384 5448 5.398603 AAAAGAACCAACATGACACAACA 57.601 34.783 0.00 0.00 0.00 3.33
1385 5449 6.099341 AGAAAAAGAACCAACATGACACAAC 58.901 36.000 0.00 0.00 0.00 3.32
1386 5450 6.279513 AGAAAAAGAACCAACATGACACAA 57.720 33.333 0.00 0.00 0.00 3.33
1390 5454 4.976116 CCGAAGAAAAAGAACCAACATGAC 59.024 41.667 0.00 0.00 0.00 3.06
1393 5457 3.320826 CCCCGAAGAAAAAGAACCAACAT 59.679 43.478 0.00 0.00 0.00 2.71
1415 5479 5.373262 CACCAAACGAAAGCAATTAAATGC 58.627 37.500 7.45 7.45 46.78 3.56
1574 5639 5.474532 ACAGACAATTTCAGCTGATAGCAAA 59.525 36.000 19.04 8.86 45.56 3.68
1578 5643 5.675575 GCCAACAGACAATTTCAGCTGATAG 60.676 44.000 19.04 10.19 32.86 2.08
1590 5655 0.035317 TCAGCGAGCCAACAGACAAT 59.965 50.000 0.00 0.00 0.00 2.71
1592 5657 0.671472 CATCAGCGAGCCAACAGACA 60.671 55.000 0.00 0.00 0.00 3.41
1593 5658 1.975363 GCATCAGCGAGCCAACAGAC 61.975 60.000 0.00 0.00 0.00 3.51
1595 5660 2.789917 GCATCAGCGAGCCAACAG 59.210 61.111 0.00 0.00 0.00 3.16
1601 5666 5.911013 AACTTCAGTTTAGCATCAGCGAGC 61.911 45.833 0.00 0.00 39.71 5.03
1602 5667 3.681897 AACTTCAGTTTAGCATCAGCGAG 59.318 43.478 0.00 0.00 39.71 5.03
1603 5668 3.664107 AACTTCAGTTTAGCATCAGCGA 58.336 40.909 0.00 0.00 39.71 4.93
1604 5669 5.725110 ATAACTTCAGTTTAGCATCAGCG 57.275 39.130 0.00 0.00 41.64 5.18
1605 5670 8.370493 TGATATAACTTCAGTTTAGCATCAGC 57.630 34.615 0.00 0.00 39.31 4.26
1607 5672 9.330063 CCTTGATATAACTTCAGTTTAGCATCA 57.670 33.333 0.00 0.59 39.31 3.07
1608 5673 8.286097 GCCTTGATATAACTTCAGTTTAGCATC 58.714 37.037 0.00 0.00 39.31 3.91
1609 5674 7.229506 GGCCTTGATATAACTTCAGTTTAGCAT 59.770 37.037 0.00 0.00 39.31 3.79
1610 5675 6.542370 GGCCTTGATATAACTTCAGTTTAGCA 59.458 38.462 0.00 0.00 39.31 3.49
1611 5676 6.768381 AGGCCTTGATATAACTTCAGTTTAGC 59.232 38.462 0.00 0.00 39.31 3.09
1612 5677 8.738645 AAGGCCTTGATATAACTTCAGTTTAG 57.261 34.615 19.73 0.00 39.31 1.85
1613 5678 9.609346 GTAAGGCCTTGATATAACTTCAGTTTA 57.391 33.333 28.77 0.00 39.31 2.01
1614 5679 8.329502 AGTAAGGCCTTGATATAACTTCAGTTT 58.670 33.333 28.77 0.00 39.31 2.66
1652 5717 3.589735 TGCCTCCCCTCATTAACAGTTTA 59.410 43.478 0.00 0.00 0.00 2.01
1653 5718 2.378547 TGCCTCCCCTCATTAACAGTTT 59.621 45.455 0.00 0.00 0.00 2.66
1654 5719 1.992557 TGCCTCCCCTCATTAACAGTT 59.007 47.619 0.00 0.00 0.00 3.16
1655 5720 1.668826 TGCCTCCCCTCATTAACAGT 58.331 50.000 0.00 0.00 0.00 3.55
1677 5742 1.134037 AGTACCAACAGCGAAAACCCA 60.134 47.619 0.00 0.00 0.00 4.51
1679 5744 3.656559 TCTAGTACCAACAGCGAAAACC 58.343 45.455 0.00 0.00 0.00 3.27
1683 5748 2.799017 TCCTCTAGTACCAACAGCGAA 58.201 47.619 0.00 0.00 0.00 4.70
1685 5750 3.802948 ATTCCTCTAGTACCAACAGCG 57.197 47.619 0.00 0.00 0.00 5.18
1696 5761 6.407202 CCCCATTCCGTATTTATTCCTCTAG 58.593 44.000 0.00 0.00 0.00 2.43
1710 5775 0.541063 GTTTCCAACCCCCATTCCGT 60.541 55.000 0.00 0.00 0.00 4.69
1716 5802 0.833949 GCAAAAGTTTCCAACCCCCA 59.166 50.000 0.00 0.00 0.00 4.96
1726 5812 8.956533 AACCACATTTACATAAGCAAAAGTTT 57.043 26.923 0.00 0.00 0.00 2.66
1730 5817 6.989169 AGCAAACCACATTTACATAAGCAAAA 59.011 30.769 0.00 0.00 0.00 2.44
1731 5818 6.423302 CAGCAAACCACATTTACATAAGCAAA 59.577 34.615 0.00 0.00 0.00 3.68
1807 5980 5.260424 TGATTACTGCCTAAATTGCAAGGA 58.740 37.500 4.94 0.00 38.46 3.36
1815 5988 9.499479 CTCTTGTATGATGATTACTGCCTAAAT 57.501 33.333 0.00 0.00 0.00 1.40
1821 5994 5.059161 TGGCTCTTGTATGATGATTACTGC 58.941 41.667 0.00 0.00 0.00 4.40
1822 5995 6.539826 TGTTGGCTCTTGTATGATGATTACTG 59.460 38.462 0.00 0.00 0.00 2.74
1829 6002 6.403636 GGTTACTTGTTGGCTCTTGTATGATG 60.404 42.308 0.00 0.00 0.00 3.07
1835 6008 3.214328 CAGGTTACTTGTTGGCTCTTGT 58.786 45.455 0.00 0.00 0.00 3.16
1842 6015 5.245531 TCTGATTAGCAGGTTACTTGTTGG 58.754 41.667 0.00 0.00 44.98 3.77
1847 6020 4.884164 GCCAATCTGATTAGCAGGTTACTT 59.116 41.667 14.54 0.00 46.07 2.24
1860 6034 4.018960 ACTGTCTGTTAAGGCCAATCTGAT 60.019 41.667 5.01 0.00 0.00 2.90
1921 6095 6.042322 ACATCAACACTTGGTACTTGGTAGTA 59.958 38.462 0.00 0.00 35.78 1.82
1922 6096 5.163237 ACATCAACACTTGGTACTTGGTAGT 60.163 40.000 0.00 0.00 38.44 2.73
1923 6097 5.305585 ACATCAACACTTGGTACTTGGTAG 58.694 41.667 0.00 0.00 0.00 3.18
1924 6098 5.298989 ACATCAACACTTGGTACTTGGTA 57.701 39.130 0.00 0.00 0.00 3.25
1925 6099 4.164843 ACATCAACACTTGGTACTTGGT 57.835 40.909 0.00 0.00 0.00 3.67
1926 6100 4.792704 GCAACATCAACACTTGGTACTTGG 60.793 45.833 0.00 0.00 0.00 3.61
1927 6101 4.036734 AGCAACATCAACACTTGGTACTTG 59.963 41.667 0.00 0.00 0.00 3.16
1930 6104 4.568152 AAGCAACATCAACACTTGGTAC 57.432 40.909 0.00 0.00 0.00 3.34
1940 6114 4.924305 AAGAGCAGAAAAGCAACATCAA 57.076 36.364 0.00 0.00 36.85 2.57
2117 6291 3.963428 AAGGCGGATATACATCTGTCC 57.037 47.619 0.00 0.00 42.26 4.02
2134 6308 7.872113 AATACCTCAGCAGAAAGATAAAAGG 57.128 36.000 0.00 0.00 0.00 3.11
2250 6424 5.047566 TCCAGAGAAATGGACAGTTTGAA 57.952 39.130 0.00 0.00 44.56 2.69
2427 6639 6.400568 CACCTTGATTTTTGCCATCTTATGT 58.599 36.000 0.00 0.00 0.00 2.29
2445 6657 4.789012 AAATGTGTTCATAGGCACCTTG 57.211 40.909 0.00 0.00 34.94 3.61
2505 6720 3.481453 ACTGAAAGCTTTCTCCAGTTCC 58.519 45.455 33.03 10.62 37.60 3.62
2628 6843 4.035091 TGTTTGTTCACTCATTTCAGTCCG 59.965 41.667 0.00 0.00 0.00 4.79
2732 6950 1.079750 GCTCACGAGTGGTCCCTTC 60.080 63.158 3.19 0.00 0.00 3.46
2807 7025 5.182760 AGAACATCTTCTGGCAATCTTTGTC 59.817 40.000 0.00 0.00 35.24 3.18
2815 7033 3.777106 AGTGAGAACATCTTCTGGCAA 57.223 42.857 0.00 0.00 36.82 4.52
2988 7206 0.754957 TTTGCACAGTTCCACCAGGG 60.755 55.000 0.00 0.00 34.83 4.45
3018 7236 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
3019 7237 0.754587 ATTCCGGACGGAGGGAGTAC 60.755 60.000 13.64 0.00 46.06 2.73
3020 7238 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3021 7239 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
3022 7240 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3023 7241 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
3024 7242 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3025 7243 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3026 7244 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3027 7245 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3028 7246 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3029 7247 1.916000 GACGACAAGTAATTCCGGACG 59.084 52.381 1.83 3.25 0.00 4.79
3030 7248 2.950433 TGACGACAAGTAATTCCGGAC 58.050 47.619 1.83 0.00 0.00 4.79
3031 7249 3.663995 TTGACGACAAGTAATTCCGGA 57.336 42.857 0.00 0.00 0.00 5.14
3032 7250 4.735662 TTTTGACGACAAGTAATTCCGG 57.264 40.909 0.00 0.00 37.32 5.14
3033 7251 5.086058 CCATTTTGACGACAAGTAATTCCG 58.914 41.667 0.00 0.00 37.32 4.30
3034 7252 6.249035 TCCATTTTGACGACAAGTAATTCC 57.751 37.500 0.00 0.00 37.32 3.01
3035 7253 9.834628 TTTATCCATTTTGACGACAAGTAATTC 57.165 29.630 0.00 0.00 37.32 2.17
3039 7257 9.619316 CATTTTTATCCATTTTGACGACAAGTA 57.381 29.630 0.00 0.00 37.32 2.24
3040 7258 7.598493 CCATTTTTATCCATTTTGACGACAAGT 59.402 33.333 0.00 0.00 37.32 3.16
3041 7259 7.812191 TCCATTTTTATCCATTTTGACGACAAG 59.188 33.333 0.00 0.00 37.32 3.16
3042 7260 7.661968 TCCATTTTTATCCATTTTGACGACAA 58.338 30.769 0.00 0.00 0.00 3.18
3043 7261 7.220741 TCCATTTTTATCCATTTTGACGACA 57.779 32.000 0.00 0.00 0.00 4.35
3044 7262 7.759433 ACATCCATTTTTATCCATTTTGACGAC 59.241 33.333 0.00 0.00 0.00 4.34
3045 7263 7.835822 ACATCCATTTTTATCCATTTTGACGA 58.164 30.769 0.00 0.00 0.00 4.20
3046 7264 9.748708 ATACATCCATTTTTATCCATTTTGACG 57.251 29.630 0.00 0.00 0.00 4.35
3082 7300 9.178758 GAGAAATGGATGTACCTAGATGTTTTT 57.821 33.333 0.00 0.00 39.86 1.94
3083 7301 7.775561 GGAGAAATGGATGTACCTAGATGTTTT 59.224 37.037 0.00 0.00 39.86 2.43
3084 7302 7.283329 GGAGAAATGGATGTACCTAGATGTTT 58.717 38.462 0.00 0.00 39.86 2.83
3085 7303 6.463049 CGGAGAAATGGATGTACCTAGATGTT 60.463 42.308 0.00 0.00 39.86 2.71
3086 7304 5.011125 CGGAGAAATGGATGTACCTAGATGT 59.989 44.000 0.00 0.00 39.86 3.06
3087 7305 5.243954 TCGGAGAAATGGATGTACCTAGATG 59.756 44.000 0.00 0.00 39.86 2.90
3088 7306 5.244178 GTCGGAGAAATGGATGTACCTAGAT 59.756 44.000 0.00 0.00 39.69 1.98
3089 7307 4.583489 GTCGGAGAAATGGATGTACCTAGA 59.417 45.833 0.00 0.00 39.69 2.43
3090 7308 4.341235 TGTCGGAGAAATGGATGTACCTAG 59.659 45.833 0.00 0.00 39.69 3.02
3091 7309 4.283337 TGTCGGAGAAATGGATGTACCTA 58.717 43.478 0.00 0.00 39.69 3.08
3092 7310 3.104512 TGTCGGAGAAATGGATGTACCT 58.895 45.455 0.00 0.00 39.69 3.08
3093 7311 3.536956 TGTCGGAGAAATGGATGTACC 57.463 47.619 0.00 0.00 39.69 3.34
3094 7312 4.504858 ACTTGTCGGAGAAATGGATGTAC 58.495 43.478 0.00 0.00 39.69 2.90
3095 7313 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
3096 7314 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
3097 7315 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
3098 7316 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
3099 7317 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
3100 7318 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
3101 7319 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
3102 7320 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3103 7321 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3104 7322 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
3105 7323 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3106 7324 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3107 7325 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3108 7326 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3109 7327 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3110 7328 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3111 7329 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3112 7330 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3113 7331 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3114 7332 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3115 7333 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3116 7334 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3117 7335 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3118 7336 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
3119 7337 0.682209 CTTACTCCCTCCGTCCGGAA 60.682 60.000 5.23 0.00 44.66 4.30
3120 7338 1.077212 CTTACTCCCTCCGTCCGGA 60.077 63.158 0.00 0.00 42.90 5.14
3121 7339 0.969409 AACTTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
3122 7340 0.893447 AAACTTACTCCCTCCGTCCG 59.107 55.000 0.00 0.00 0.00 4.79
3123 7341 4.541973 TTAAAACTTACTCCCTCCGTCC 57.458 45.455 0.00 0.00 0.00 4.79
3124 7342 5.936372 ACAATTAAAACTTACTCCCTCCGTC 59.064 40.000 0.00 0.00 0.00 4.79
3125 7343 5.872963 ACAATTAAAACTTACTCCCTCCGT 58.127 37.500 0.00 0.00 0.00 4.69
3126 7344 6.171213 AGACAATTAAAACTTACTCCCTCCG 58.829 40.000 0.00 0.00 0.00 4.63
3127 7345 8.098912 TGTAGACAATTAAAACTTACTCCCTCC 58.901 37.037 0.00 0.00 0.00 4.30
3128 7346 9.498176 TTGTAGACAATTAAAACTTACTCCCTC 57.502 33.333 0.00 0.00 0.00 4.30
3164 7382 5.105310 TCAGCTGTCCAGAGTAAGATTAACC 60.105 44.000 14.67 0.00 0.00 2.85
3242 7460 7.858583 ACATAAACGAAGACTAAGGTTTTGAC 58.141 34.615 0.00 0.00 34.68 3.18
3303 7521 6.630444 ACATTACTATTCATACGGACGAGT 57.370 37.500 0.00 0.00 0.00 4.18
3392 7610 5.696724 AGAAAGACATCAAACGTTAGTCCAG 59.303 40.000 0.00 0.00 0.00 3.86
3407 7625 8.944029 CACACAGATAATTCAAGAGAAAGACAT 58.056 33.333 0.00 0.00 37.29 3.06
3424 7642 6.569801 CGAGAGTCCAACTTTACACACAGATA 60.570 42.308 0.00 0.00 0.00 1.98
3437 7655 3.157881 TGAACAGATCGAGAGTCCAACT 58.842 45.455 0.00 0.00 0.00 3.16
3750 7971 1.530720 CTGTATTCAAGCGTGTGCACA 59.469 47.619 17.42 17.42 46.23 4.57
3752 7973 1.530720 CACTGTATTCAAGCGTGTGCA 59.469 47.619 0.00 0.00 46.23 4.57
3753 7974 1.135972 CCACTGTATTCAAGCGTGTGC 60.136 52.381 0.00 0.00 43.24 4.57
3758 7979 6.146510 TGTTAACTTACCACTGTATTCAAGCG 59.853 38.462 7.22 0.00 0.00 4.68
3768 7989 5.277828 GCCAAGTTCTGTTAACTTACCACTG 60.278 44.000 7.22 0.00 38.32 3.66
3770 7991 4.023450 GGCCAAGTTCTGTTAACTTACCAC 60.023 45.833 7.22 0.00 38.32 4.16
3778 7999 6.969993 AAAATAGTGGCCAAGTTCTGTTAA 57.030 33.333 7.24 0.00 0.00 2.01
3784 8005 4.163552 GCGTTAAAATAGTGGCCAAGTTC 58.836 43.478 7.24 0.00 0.00 3.01
3791 8012 4.094294 TCATGTCTGCGTTAAAATAGTGGC 59.906 41.667 0.00 0.00 0.00 5.01
3796 8017 7.097192 AGACTTCTCATGTCTGCGTTAAAATA 58.903 34.615 0.00 0.00 42.46 1.40
3802 8023 2.560542 AGAGACTTCTCATGTCTGCGTT 59.439 45.455 8.93 0.00 43.88 4.84
3804 8025 2.528125 CAGAGACTTCTCATGTCTGCG 58.472 52.381 8.93 0.00 43.88 5.18
3831 8052 4.546829 TTCACCTACAGTCCATAACACC 57.453 45.455 0.00 0.00 0.00 4.16
3873 8094 6.229561 AGAACGAGTACAAAAGAGCAAATC 57.770 37.500 0.00 0.00 0.00 2.17
3912 8133 3.641436 TCTCGCATACTATCACAACCCAT 59.359 43.478 0.00 0.00 0.00 4.00
3929 8150 1.421485 CAGCAACGATGGTTCTCGC 59.579 57.895 0.00 0.00 42.35 5.03
3968 8197 2.095059 CGCCCCTTTCTGAATGAACAAG 60.095 50.000 4.98 0.00 33.88 3.16
3972 8201 2.026356 TCATCGCCCCTTTCTGAATGAA 60.026 45.455 4.98 0.00 0.00 2.57
4093 8351 1.699656 CCGAACGCTTGCAGATCCTG 61.700 60.000 0.00 0.00 34.12 3.86
4210 8468 7.875041 CACCACTATCTTTTTCTTTCTCTCTGA 59.125 37.037 0.00 0.00 0.00 3.27
4215 8473 8.608844 TTCTCACCACTATCTTTTTCTTTCTC 57.391 34.615 0.00 0.00 0.00 2.87
4239 8497 2.028130 TCGCAAAACCTGGATGTGTTT 58.972 42.857 0.00 0.00 36.29 2.83
4251 8522 3.638484 ACACCAAAGCTTATCGCAAAAC 58.362 40.909 0.00 0.00 42.61 2.43
4255 8526 2.499197 TCAACACCAAAGCTTATCGCA 58.501 42.857 0.00 0.00 42.61 5.10
4257 8528 5.327091 CAGAATCAACACCAAAGCTTATCG 58.673 41.667 0.00 0.00 0.00 2.92
4267 8538 3.490439 TCTTCAGCAGAATCAACACCA 57.510 42.857 0.00 0.00 32.31 4.17
4294 8565 0.257328 TGTGGTCAGACCCAAGCAAA 59.743 50.000 17.59 0.00 37.50 3.68
4311 8582 9.077885 ACAAGATTGTACTGGTAAATTTGATGT 57.922 29.630 0.00 0.00 40.16 3.06
4383 8654 4.534103 AGCTCCTCTAAACTCACAGGAAAT 59.466 41.667 0.00 0.00 34.53 2.17
4490 8761 8.837788 TTAGATTTGTCTAGATACGGATCGTA 57.162 34.615 0.92 2.62 46.28 3.43
4491 8762 7.660617 TCTTAGATTTGTCTAGATACGGATCGT 59.339 37.037 0.92 0.00 44.35 3.73
4492 8763 7.958567 GTCTTAGATTTGTCTAGATACGGATCG 59.041 40.741 0.92 0.00 37.15 3.69
4493 8764 8.784994 TGTCTTAGATTTGTCTAGATACGGATC 58.215 37.037 0.00 0.00 0.00 3.36
4495 8766 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
4496 8767 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
4504 8775 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4505 8776 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4506 8777 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4507 8778 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4508 8779 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
4509 8780 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
4510 8781 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
4511 8782 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
4512 8783 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
4513 8784 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4514 8785 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4515 8786 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4516 8787 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4517 8788 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4518 8789 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4519 8790 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4520 8791 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4521 8792 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4522 8793 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4523 8794 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4524 8795 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4525 8796 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
4526 8797 1.466074 TGTACTCCCTCCGTCCCAA 59.534 57.895 0.00 0.00 0.00 4.12
4527 8798 3.183287 TGTACTCCCTCCGTCCCA 58.817 61.111 0.00 0.00 0.00 4.37
4794 9065 1.202879 ACATGAGAGTCCCCGCAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
4795 9066 0.400213 ACATGAGAGTCCCCGCAAAA 59.600 50.000 0.00 0.00 0.00 2.44
4796 9067 0.321564 CACATGAGAGTCCCCGCAAA 60.322 55.000 0.00 0.00 0.00 3.68
4797 9068 1.296392 CACATGAGAGTCCCCGCAA 59.704 57.895 0.00 0.00 0.00 4.85
4798 9069 2.659063 CCACATGAGAGTCCCCGCA 61.659 63.158 0.00 0.00 0.00 5.69
4799 9070 2.187946 CCACATGAGAGTCCCCGC 59.812 66.667 0.00 0.00 0.00 6.13
4800 9071 2.187946 GCCACATGAGAGTCCCCG 59.812 66.667 0.00 0.00 0.00 5.73
4801 9072 1.222936 CTGCCACATGAGAGTCCCC 59.777 63.158 0.00 0.00 0.00 4.81
4802 9073 0.326264 AACTGCCACATGAGAGTCCC 59.674 55.000 0.00 0.00 0.00 4.46
4803 9074 1.002430 TCAACTGCCACATGAGAGTCC 59.998 52.381 0.00 0.00 0.00 3.85
4804 9075 2.072298 GTCAACTGCCACATGAGAGTC 58.928 52.381 0.00 0.00 0.00 3.36
4805 9076 1.696336 AGTCAACTGCCACATGAGAGT 59.304 47.619 0.00 0.00 0.00 3.24
4806 9077 2.074576 CAGTCAACTGCCACATGAGAG 58.925 52.381 0.00 0.00 37.15 3.20
4807 9078 2.174363 CAGTCAACTGCCACATGAGA 57.826 50.000 0.00 0.00 37.15 3.27
4867 9139 0.317479 GGGACACGAGCTGTAACACT 59.683 55.000 0.00 0.00 31.03 3.55
4868 9140 0.317479 AGGGACACGAGCTGTAACAC 59.683 55.000 0.00 0.00 31.03 3.32
4869 9141 1.816835 CTAGGGACACGAGCTGTAACA 59.183 52.381 0.00 0.00 31.03 2.41
4870 9142 1.469423 GCTAGGGACACGAGCTGTAAC 60.469 57.143 2.09 0.00 43.55 2.50
4871 9143 0.815734 GCTAGGGACACGAGCTGTAA 59.184 55.000 2.09 0.00 43.55 2.41
4872 9144 2.490165 GCTAGGGACACGAGCTGTA 58.510 57.895 2.09 0.00 43.55 2.74
4873 9145 3.289525 GCTAGGGACACGAGCTGT 58.710 61.111 2.09 0.00 43.55 4.40
4876 9148 1.870167 GCATAAGCTAGGGACACGAGC 60.870 57.143 0.86 0.86 46.78 5.03
4877 9149 2.141535 GCATAAGCTAGGGACACGAG 57.858 55.000 0.00 0.00 37.91 4.18
4891 9163 9.044150 GCATGCCTGATTTTATAAAAAGCATAA 57.956 29.630 24.88 13.18 35.08 1.90
4893 9165 7.049133 TGCATGCCTGATTTTATAAAAAGCAT 58.951 30.769 22.36 22.36 36.13 3.79
4900 9172 5.834742 AGACCATGCATGCCTGATTTTATAA 59.165 36.000 22.75 0.00 0.00 0.98
4907 9179 1.214673 AGAAGACCATGCATGCCTGAT 59.785 47.619 22.75 7.09 0.00 2.90
4908 9180 0.622136 AGAAGACCATGCATGCCTGA 59.378 50.000 22.75 1.12 0.00 3.86
4915 9187 6.114187 TCTTTTTAGAGAGAAGACCATGCA 57.886 37.500 0.00 0.00 0.00 3.96
4917 9189 9.837525 CATTTTCTTTTTAGAGAGAAGACCATG 57.162 33.333 0.00 0.00 33.77 3.66
4936 9208 3.940209 TTGATTCGGCAAGCATTTTCT 57.060 38.095 0.00 0.00 0.00 2.52
4943 9215 1.399791 CTCCTCTTTGATTCGGCAAGC 59.600 52.381 0.00 0.00 0.00 4.01
4997 9269 0.938713 TACGTTCCTGCAACAAACCG 59.061 50.000 0.00 0.00 34.20 4.44
5004 9276 2.736144 AGAATCGTACGTTCCTGCAA 57.264 45.000 16.05 0.00 0.00 4.08
5006 9278 2.853003 GAGAAGAATCGTACGTTCCTGC 59.147 50.000 16.05 8.99 0.00 4.85
5007 9279 4.099120 CAGAGAAGAATCGTACGTTCCTG 58.901 47.826 16.05 14.91 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.