AutoCloner

Multiple sequence alignment - TraesCS6B01G295000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G295000	chr6B	100.000	4191	0	0	1	4191	529772475	529776665	0.000000e+00	7740.0
1	TraesCS6B01G295000	chr6B	94.189	1893	99	7	1337	3223	530852430	530850543	0.000000e+00	2876.0
2	TraesCS6B01G295000	chr6B	95.212	1671	78	2	1558	3226	529889858	529891528	0.000000e+00	2641.0
3	TraesCS6B01G295000	chr6B	93.003	786	53	2	3404	4187	513858945	513859730	0.000000e+00	1146.0
4	TraesCS6B01G295000	chr6B	77.733	247	26	17	985	1204	530852799	530852555	1.580000e-24	124.0
5	TraesCS6B01G295000	chr6B	96.078	51	2	0	3300	3350	529891784	529891834	2.690000e-12	84.2
6	TraesCS6B01G295000	chr6B	97.674	43	1	0	805	847	529889338	529889380	1.620000e-09	75.0
7	TraesCS6B01G295000	chr6A	93.702	3001	96	27	326	3267	493755035	493758001	0.000000e+00	4409.0
8	TraesCS6B01G295000	chr6A	94.734	2032	69	16	1386	3409	493842324	493844325	0.000000e+00	3125.0
9	TraesCS6B01G295000	chr6A	94.284	1907	96	6	1338	3239	495154311	495152413	0.000000e+00	2905.0
10	TraesCS6B01G295000	chr6A	90.891	1998	151	20	1353	3341	494046792	494048767	0.000000e+00	2652.0
11	TraesCS6B01G295000	chr6A	93.384	786	51	1	3403	4187	268565723	268566508	0.000000e+00	1162.0
12	TraesCS6B01G295000	chr6A	76.206	601	82	37	987	1539	494881217	494880630	1.160000e-65	261.0
13	TraesCS6B01G295000	chr6A	95.604	91	4	0	805	895	493842109	493842199	3.380000e-31	147.0
14	TraesCS6B01G295000	chr6A	96.296	81	3	0	102	182	493754916	493754996	2.630000e-27	134.0
15	TraesCS6B01G295000	chr6A	92.063	63	5	0	987	1049	495154717	495154655	5.770000e-14	89.8
16	TraesCS6B01G295000	chr6D	97.439	2304	56	3	1887	4189	350204789	350202488	0.000000e+00	3925.0
17	TraesCS6B01G295000	chr6D	93.211	2018	111	10	1337	3339	348861131	348863137	0.000000e+00	2944.0
18	TraesCS6B01G295000	chr6D	93.912	1889	104	6	1337	3220	349031188	349033070	0.000000e+00	2841.0
19	TraesCS6B01G295000	chr6D	89.198	1620	68	22	298	1863	350206338	350204772	0.000000e+00	1923.0
20	TraesCS6B01G295000	chr6D	80.321	249	32	7	805	1049	350084438	350084203	5.570000e-39	172.0
21	TraesCS6B01G295000	chr6D	92.063	63	5	0	987	1049	358216547	358216609	5.770000e-14	89.8
22	TraesCS6B01G295000	chr6D	88.158	76	5	2	106	179	349029759	349029832	2.080000e-13	87.9
23	TraesCS6B01G295000	chr6D	92.593	54	4	0	1	54	350207975	350207922	1.250000e-10	78.7
24	TraesCS6B01G295000	chr7D	93.384	786	48	4	3405	4187	178720	177936	0.000000e+00	1160.0
25	TraesCS6B01G295000	chr1D	92.947	794	45	5	3403	4187	125751881	125752672	0.000000e+00	1146.0
26	TraesCS6B01G295000	chr1D	92.857	784	53	3	3405	4186	482994979	482995761	0.000000e+00	1134.0
27	TraesCS6B01G295000	chr4A	92.739	785	53	4	3405	4187	27177980	27177198	0.000000e+00	1131.0
28	TraesCS6B01G295000	chr3B	92.219	784	60	1	3405	4187	666194020	666194803	0.000000e+00	1109.0
29	TraesCS6B01G295000	chr7A	92.112	786	58	4	3405	4187	37290311	37291095	0.000000e+00	1105.0
30	TraesCS6B01G295000	chr7A	88.462	52	6	0	3358	3409	682176878	682176827	3.500000e-06	63.9
31	TraesCS6B01G295000	chrUn	90.769	65	6	0	985	1049	209272252	209272316	2.080000e-13	87.9
32	TraesCS6B01G295000	chr7B	90.769	65	6	0	985	1049	642232385	642232449	2.080000e-13	87.9
33	TraesCS6B01G295000	chr7B	89.130	46	5	0	3358	3403	656285495	656285540	1.630000e-04	58.4
34	TraesCS6B01G295000	chr4B	92.982	57	4	0	3353	3409	147699471	147699415	2.690000e-12	84.2
35	TraesCS6B01G295000	chr2D	92.982	57	4	0	3353	3409	590938002	590937946	2.690000e-12	84.2
36	TraesCS6B01G295000	chr1B	86.765	68	8	1	3343	3409	569514629	569514562	1.620000e-09	75.0
37	TraesCS6B01G295000	chr2A	94.118	34	2	0	3376	3409	27631844	27631811	8.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G295000	chr6B	529772475	529776665	4190	False	7740.000000	7740	100.000000	1	4191	1	chr6B.!!$F2	4190
1	TraesCS6B01G295000	chr6B	530850543	530852799	2256	True	1500.000000	2876	85.961000	985	3223	2	chr6B.!!$R1	2238
2	TraesCS6B01G295000	chr6B	513858945	513859730	785	False	1146.000000	1146	93.003000	3404	4187	1	chr6B.!!$F1	783
3	TraesCS6B01G295000	chr6B	529889338	529891834	2496	False	933.400000	2641	96.321333	805	3350	3	chr6B.!!$F3	2545
4	TraesCS6B01G295000	chr6A	494046792	494048767	1975	False	2652.000000	2652	90.891000	1353	3341	1	chr6A.!!$F2	1988
5	TraesCS6B01G295000	chr6A	493754916	493758001	3085	False	2271.500000	4409	94.999000	102	3267	2	chr6A.!!$F3	3165
6	TraesCS6B01G295000	chr6A	493842109	493844325	2216	False	1636.000000	3125	95.169000	805	3409	2	chr6A.!!$F4	2604
7	TraesCS6B01G295000	chr6A	495152413	495154717	2304	True	1497.400000	2905	93.173500	987	3239	2	chr6A.!!$R2	2252
8	TraesCS6B01G295000	chr6A	268565723	268566508	785	False	1162.000000	1162	93.384000	3403	4187	1	chr6A.!!$F1	784
9	TraesCS6B01G295000	chr6A	494880630	494881217	587	True	261.000000	261	76.206000	987	1539	1	chr6A.!!$R1	552
10	TraesCS6B01G295000	chr6D	348861131	348863137	2006	False	2944.000000	2944	93.211000	1337	3339	1	chr6D.!!$F1	2002
11	TraesCS6B01G295000	chr6D	350202488	350207975	5487	True	1975.566667	3925	93.076667	1	4189	3	chr6D.!!$R2	4188
12	TraesCS6B01G295000	chr6D	349029759	349033070	3311	False	1464.450000	2841	91.035000	106	3220	2	chr6D.!!$F3	3114
13	TraesCS6B01G295000	chr7D	177936	178720	784	True	1160.000000	1160	93.384000	3405	4187	1	chr7D.!!$R1	782
14	TraesCS6B01G295000	chr1D	125751881	125752672	791	False	1146.000000	1146	92.947000	3403	4187	1	chr1D.!!$F1	784
15	TraesCS6B01G295000	chr1D	482994979	482995761	782	False	1134.000000	1134	92.857000	3405	4186	1	chr1D.!!$F2	781
16	TraesCS6B01G295000	chr4A	27177198	27177980	782	True	1131.000000	1131	92.739000	3405	4187	1	chr4A.!!$R1	782
17	TraesCS6B01G295000	chr3B	666194020	666194803	783	False	1109.000000	1109	92.219000	3405	4187	1	chr3B.!!$F1	782
18	TraesCS6B01G295000	chr7A	37290311	37291095	784	False	1105.000000	1105	92.112000	3405	4187	1	chr7A.!!$F1	782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
246	1678	0.104409	AGTTCCTGGTCCTCCAAGGT	60.104	55.0	0.00	43.81	3.50	F
249	1681	0.193574	TCCTGGTCCTCCAAGGTTCT	59.806	55.0	0.00	43.81	3.01	F
766	2312	0.392706	ACGCATGTGTTGGTGAGAGA	59.607	50.0	5.96	0.00	3.10	F
2134	3930	0.976641	TCTGGATCCAGCAGAACGTT	59.023	50.0	33.39	43.31	3.99	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1467	3192	0.178981	AATCACTGCTGGTGCCTTGT	60.179	50.000	5.70	44.98	3.16	R
2048	3844	0.759346	AACCAGCTGAAGAAGGACGT	59.241	50.000	17.39	0.00	4.34	R
2305	4101	1.516423	GTAGAGGTGTCCGGCTTCC	59.484	63.158	0.00	0.00	3.46	R
3649	5651	0.252558	ACACGTCCCTACCTCCCAAT	60.253	55.000	0.00	0.00	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	6.366061	GCCTTGGTTTCTTTTGCATTAACTAG	59.634	38.462	0.00	0.00	0.00	2.57
37	38	7.174946	TGGTTTCTTTTGCATTAACTAGGAGAG	59.825	37.037	0.00	0.00	0.00	3.20
39	40	6.620877	TCTTTTGCATTAACTAGGAGAGGA	57.379	37.500	0.00	0.00	0.00	3.71
45	1393	7.291411	TGCATTAACTAGGAGAGGAGTAATC	57.709	40.000	0.00	0.00	0.00	1.75
77	1429	2.292126	TGGAGGACTGAGCTTCTCATCT	60.292	50.000	0.00	0.00	39.92	2.90
94	1446	0.749818	TCTTGGTTTTGGCAGCGTCA	60.750	50.000	0.00	0.00	0.00	4.35
110	1462	2.550978	CGTCAGAGTGGTCTTTTGTGT	58.449	47.619	0.00	0.00	0.00	3.72
126	1480	7.278868	GTCTTTTGTGTAGAATATCCTCACCAG	59.721	40.741	0.00	0.00	0.00	4.00
191	1545	9.454859	AATGAAGGAAGAAATAGTAGAGTTTGG	57.545	33.333	0.00	0.00	0.00	3.28
192	1546	8.202461	TGAAGGAAGAAATAGTAGAGTTTGGA	57.798	34.615	0.00	0.00	0.00	3.53
193	1547	8.095169	TGAAGGAAGAAATAGTAGAGTTTGGAC	58.905	37.037	0.00	0.00	0.00	4.02
194	1548	7.800300	AGGAAGAAATAGTAGAGTTTGGACT	57.200	36.000	0.00	0.00	39.32	3.85
246	1678	0.104409	AGTTCCTGGTCCTCCAAGGT	60.104	55.000	0.00	0.00	43.81	3.50
249	1681	0.193574	TCCTGGTCCTCCAAGGTTCT	59.806	55.000	0.00	0.00	43.81	3.01
259	1691	4.469945	TCCTCCAAGGTTCTAATACACTGG	59.530	45.833	0.00	0.00	36.53	4.00
261	1693	5.416271	TCCAAGGTTCTAATACACTGGTC	57.584	43.478	0.00	0.00	0.00	4.02
269	1701	5.661056	TCTAATACACTGGTCCACTCTTG	57.339	43.478	0.00	0.00	0.00	3.02
280	1712	2.481952	GTCCACTCTTGAGCACACATTC	59.518	50.000	0.00	0.00	0.00	2.67
281	1713	2.104622	TCCACTCTTGAGCACACATTCA	59.895	45.455	0.00	0.00	0.00	2.57
282	1714	3.079578	CCACTCTTGAGCACACATTCAT	58.920	45.455	0.00	0.00	0.00	2.57
283	1715	3.126514	CCACTCTTGAGCACACATTCATC	59.873	47.826	0.00	0.00	0.00	2.92
284	1716	4.001652	CACTCTTGAGCACACATTCATCT	58.998	43.478	0.00	0.00	0.00	2.90
285	1717	4.001652	ACTCTTGAGCACACATTCATCTG	58.998	43.478	0.00	0.00	0.00	2.90
290	1722	5.101648	TGAGCACACATTCATCTGGATTA	57.898	39.130	0.00	0.00	0.00	1.75
339	1777	4.723309	CATCCTCCTAATCAAAGGAAGGG	58.277	47.826	0.00	0.00	45.08	3.95
423	1896	1.862602	AAATTTGACCTGTCGCCGCC	61.863	55.000	0.00	0.00	0.00	6.13
510	2009	1.544314	GCTGACCCTATGATCCCAAGC	60.544	57.143	0.00	0.00	0.00	4.01
571	2070	2.335316	AGCAAACCACCACGTTTCTA	57.665	45.000	0.00	0.00	33.69	2.10
735	2242	2.660802	GGAAACTTCCGGCCGAGA	59.339	61.111	30.73	19.83	37.65	4.04
765	2311	0.514255	CACGCATGTGTTGGTGAGAG	59.486	55.000	9.73	0.00	41.34	3.20
766	2312	0.392706	ACGCATGTGTTGGTGAGAGA	59.607	50.000	5.96	0.00	0.00	3.10
767	2313	1.073964	CGCATGTGTTGGTGAGAGAG	58.926	55.000	0.00	0.00	0.00	3.20
768	2314	1.337167	CGCATGTGTTGGTGAGAGAGA	60.337	52.381	0.00	0.00	0.00	3.10
769	2315	2.072298	GCATGTGTTGGTGAGAGAGAC	58.928	52.381	0.00	0.00	0.00	3.36
770	2316	2.693069	CATGTGTTGGTGAGAGAGACC	58.307	52.381	0.00	0.00	0.00	3.85
771	2317	1.788229	TGTGTTGGTGAGAGAGACCA	58.212	50.000	0.00	0.00	41.93	4.02
772	2318	2.329267	TGTGTTGGTGAGAGAGACCAT	58.671	47.619	0.00	0.00	43.13	3.55
773	2319	3.506398	TGTGTTGGTGAGAGAGACCATA	58.494	45.455	0.00	0.00	43.13	2.74
967	2586	1.401670	CCGCCTCCGAGAAATCTATCG	60.402	57.143	0.00	0.00	38.65	2.92
1127	2787	5.526846	GGAGATTGAAATGCTAAGTCCAGAG	59.473	44.000	0.00	0.00	0.00	3.35
1166	2826	5.276348	CGGTCAAAACAAGAAGAACATTTGC	60.276	40.000	0.00	0.00	0.00	3.68
1168	2828	5.514914	GTCAAAACAAGAAGAACATTTGCGA	59.485	36.000	0.00	0.00	0.00	5.10
1205	2868	9.503399	AAGACCGAGTCTAAATTAAAGAACATT	57.497	29.630	6.93	0.00	42.59	2.71
1242	2911	1.269831	ACGTCAGCACTGAAGGTTCTC	60.270	52.381	16.22	0.00	42.14	2.87
1345	3070	7.258441	TCTTATCCAGAACTTGTACAGATTCG	58.742	38.462	12.83	9.26	0.00	3.34
1349	3074	4.152402	CCAGAACTTGTACAGATTCGGTTG	59.848	45.833	15.25	9.50	0.00	3.77
1467	3192	3.338275	ATAAGAAGCGGGGCGGCAA	62.338	57.895	12.47	0.00	34.64	4.52
1540	3333	5.277297	GCTTTTCCAGCCAACAAAAATGTAC	60.277	40.000	0.00	0.00	43.65	2.90
1541	3334	5.606348	TTTCCAGCCAACAAAAATGTACT	57.394	34.783	0.00	0.00	0.00	2.73
1542	3335	4.582701	TCCAGCCAACAAAAATGTACTG	57.417	40.909	0.00	0.00	0.00	2.74
1543	3336	3.957497	TCCAGCCAACAAAAATGTACTGT	59.043	39.130	0.00	0.00	0.00	3.55
1544	3337	5.133941	TCCAGCCAACAAAAATGTACTGTA	58.866	37.500	0.00	0.00	0.00	2.74
1847	3643	1.079057	GTCACCTTCTCCGCCTTCC	60.079	63.158	0.00	0.00	0.00	3.46
1939	3735	1.961277	CTCGCAGACCGTGGCTTTT	60.961	57.895	0.00	0.00	38.35	2.27
1942	3738	1.733526	GCAGACCGTGGCTTTTGTT	59.266	52.632	0.00	0.00	0.00	2.83
1954	3750	1.000274	GCTTTTGTTGGGCTGTACCTG	60.000	52.381	0.00	0.00	39.10	4.00
2134	3930	0.976641	TCTGGATCCAGCAGAACGTT	59.023	50.000	33.39	0.00	43.31	3.99
2696	4492	3.958147	AAGGTGATCGTGCCAGCGG	62.958	63.158	4.04	0.00	37.14	5.52
2698	4494	2.742372	GTGATCGTGCCAGCGGTT	60.742	61.111	0.00	0.00	0.00	4.44
3367	5361	5.403897	TTGTTTTCAGTCTTGCTAAGTCG	57.596	39.130	0.00	0.00	0.00	4.18
3373	5367	1.613925	AGTCTTGCTAAGTCGCAGTCA	59.386	47.619	0.00	0.00	41.55	3.41
3438	5432	6.126883	TGGGAATTAGACGTTGTATTCCTCAT	60.127	38.462	23.82	0.00	43.51	2.90
3448	5442	3.407698	TGTATTCCTCATGTGCAAACGT	58.592	40.909	0.00	0.00	0.00	3.99
3471	5465	8.173775	ACGTACGTATATATGATGTACAAGAGC	58.826	37.037	21.41	0.00	38.62	4.09
3506	5501	6.380560	ACCTCAACTATACAAGGAACTAGGAC	59.619	42.308	0.00	0.00	38.49	3.85
3511	5506	2.005370	ACAAGGAACTAGGACGTGGA	57.995	50.000	0.00	0.00	38.49	4.02
3570	5572	1.973281	CCCACAGTCAAAGCGGCAT	60.973	57.895	1.45	0.00	0.00	4.40
3571	5573	0.676466	CCCACAGTCAAAGCGGCATA	60.676	55.000	1.45	0.00	0.00	3.14
3649	5651	6.491062	CCCTTGGTCATGATATCTGCAAATTA	59.509	38.462	0.00	0.00	0.00	1.40
3706	5708	2.359975	GGCCACCTGTTCCCGAAG	60.360	66.667	0.00	0.00	0.00	3.79
3912	5914	1.610102	CCTCAGCACTGGAACAAGAGG	60.610	57.143	0.00	0.00	38.70	3.69
3994	5996	2.143594	GAGGTGGAGCGACGAGTGTT	62.144	60.000	0.00	0.00	0.00	3.32
4022	6025	2.202987	CCCAGTCTGCATCGGAGC	60.203	66.667	0.00	0.00	0.00	4.70
4088	6091	2.169352	AGATCCATAGTGCCACAGACAC	59.831	50.000	0.00	0.00	38.35	3.67
4189	6192	0.383949	GGATCTCTGGTCGAGTCTGC	59.616	60.000	0.00	0.00	40.75	4.26
4190	6193	1.098869	GATCTCTGGTCGAGTCTGCA	58.901	55.000	0.00	0.00	40.75	4.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	1406	3.430651	CCAAGATGAGAAGCTCAGTCCTC	60.431	52.174	3.36	0.00	44.08	3.71
64	1412	3.822735	CCAAAACCAAGATGAGAAGCTCA	59.177	43.478	0.00	0.00	44.99	4.26
77	1429	0.749818	TCTGACGCTGCCAAAACCAA	60.750	50.000	0.00	0.00	0.00	3.67
94	1446	7.181125	AGGATATTCTACACAAAAGACCACTCT	59.819	37.037	0.00	0.00	0.00	3.24
126	1480	1.889170	CTTGCCTTTTCCCTCCACTTC	59.111	52.381	0.00	0.00	0.00	3.01
182	1536	4.562757	CGATGGTCCAAAGTCCAAACTCTA	60.563	45.833	0.00	0.00	34.73	2.43
188	1542	2.158740	TGAACGATGGTCCAAAGTCCAA	60.159	45.455	0.00	0.00	34.73	3.53
189	1543	1.418264	TGAACGATGGTCCAAAGTCCA	59.582	47.619	0.00	0.00	35.57	4.02
190	1544	2.076863	CTGAACGATGGTCCAAAGTCC	58.923	52.381	0.00	0.00	0.00	3.85
191	1545	1.464997	GCTGAACGATGGTCCAAAGTC	59.535	52.381	0.00	0.00	0.00	3.01
192	1546	1.202758	TGCTGAACGATGGTCCAAAGT	60.203	47.619	0.00	0.00	0.00	2.66
193	1547	1.522668	TGCTGAACGATGGTCCAAAG	58.477	50.000	0.00	0.00	0.00	2.77
194	1548	1.879380	CTTGCTGAACGATGGTCCAAA	59.121	47.619	0.00	0.00	0.00	3.28
246	1678	5.778241	TCAAGAGTGGACCAGTGTATTAGAA	59.222	40.000	6.54	0.00	0.00	2.10
249	1681	4.081642	GCTCAAGAGTGGACCAGTGTATTA	60.082	45.833	6.54	0.00	0.00	0.98
259	1691	2.175878	ATGTGTGCTCAAGAGTGGAC	57.824	50.000	0.00	0.00	0.00	4.02
261	1693	2.497138	TGAATGTGTGCTCAAGAGTGG	58.503	47.619	0.00	0.00	0.00	4.00
269	1701	5.587844	AGTTAATCCAGATGAATGTGTGCTC	59.412	40.000	0.00	0.00	0.00	4.26
339	1777	1.423395	CGGTGAGCTTCAGAACTGTC	58.577	55.000	1.73	0.00	0.00	3.51
423	1896	2.009042	GCTGATTCTGTCCAACGGAGG	61.009	57.143	0.00	0.00	34.53	4.30
431	1904	0.463474	GCTGAGGGCTGATTCTGTCC	60.463	60.000	6.09	6.09	38.06	4.02
510	2009	3.901797	GAACTCGGGGTGGTGCCAG	62.902	68.421	0.00	0.00	39.65	4.85
644	2151	1.076332	CAGGGCGTTTTTCCTACTCG	58.924	55.000	0.00	0.00	0.00	4.18
733	2240	3.418068	GCGTGCGCTGCTTCTTCT	61.418	61.111	9.73	0.00	38.26	2.85
735	2242	3.052082	ATGCGTGCGCTGCTTCTT	61.052	55.556	22.29	5.93	42.51	2.52
765	2311	6.809196	CGGACTAGAAATGCTATTATGGTCTC	59.191	42.308	0.00	3.94	33.92	3.36
766	2312	6.493802	TCGGACTAGAAATGCTATTATGGTCT	59.506	38.462	0.00	0.00	33.92	3.85
767	2313	6.688578	TCGGACTAGAAATGCTATTATGGTC	58.311	40.000	0.00	5.18	33.03	4.02
768	2314	6.665992	TCGGACTAGAAATGCTATTATGGT	57.334	37.500	0.00	0.00	0.00	3.55
769	2315	8.470805	AGTATCGGACTAGAAATGCTATTATGG	58.529	37.037	0.00	0.00	36.27	2.74
770	2316	9.862371	AAGTATCGGACTAGAAATGCTATTATG	57.138	33.333	0.00	0.00	37.44	1.90
771	2317	9.862371	CAAGTATCGGACTAGAAATGCTATTAT	57.138	33.333	0.00	0.00	37.44	1.28
772	2318	9.074576	TCAAGTATCGGACTAGAAATGCTATTA	57.925	33.333	0.00	0.00	37.44	0.98
773	2319	7.952671	TCAAGTATCGGACTAGAAATGCTATT	58.047	34.615	0.00	0.00	37.44	1.73
895	2485	2.662156	CGCTTCCTTCGTGAACTCTTAC	59.338	50.000	0.00	0.00	0.00	2.34
1166	2826	3.568853	ACTCGGTCTTATATGGAGGTTCG	59.431	47.826	0.00	0.00	0.00	3.95
1168	2828	4.805744	AGACTCGGTCTTATATGGAGGTT	58.194	43.478	1.23	0.00	40.28	3.50
1204	2867	4.510711	TGACGTACGCAAGAATTAACCAAA	59.489	37.500	16.72	0.00	43.62	3.28
1205	2868	4.056740	TGACGTACGCAAGAATTAACCAA	58.943	39.130	16.72	0.00	43.62	3.67
1345	3070	5.449304	CAGAAATTGTTAGGAACGACAACC	58.551	41.667	0.00	0.00	40.66	3.77
1349	3074	4.742438	TGCAGAAATTGTTAGGAACGAC	57.258	40.909	0.00	0.00	0.00	4.34
1467	3192	0.178981	AATCACTGCTGGTGCCTTGT	60.179	50.000	5.70	0.00	44.98	3.16
1540	3333	6.418057	AGCTCCTCTCCAATTAATCTACAG	57.582	41.667	0.00	0.00	0.00	2.74
1541	3334	7.014711	CACTAGCTCCTCTCCAATTAATCTACA	59.985	40.741	0.00	0.00	0.00	2.74
1542	3335	7.014808	ACACTAGCTCCTCTCCAATTAATCTAC	59.985	40.741	0.00	0.00	0.00	2.59
1543	3336	7.069986	ACACTAGCTCCTCTCCAATTAATCTA	58.930	38.462	0.00	0.00	0.00	1.98
1544	3337	5.902431	ACACTAGCTCCTCTCCAATTAATCT	59.098	40.000	0.00	0.00	0.00	2.40
1939	3735	1.454104	CACCAGGTACAGCCCAACA	59.546	57.895	0.00	0.00	38.26	3.33
1942	3738	3.646715	GCCACCAGGTACAGCCCA	61.647	66.667	0.00	0.00	38.26	5.36
2048	3844	0.759346	AACCAGCTGAAGAAGGACGT	59.241	50.000	17.39	0.00	0.00	4.34
2305	4101	1.516423	GTAGAGGTGTCCGGCTTCC	59.484	63.158	0.00	0.00	0.00	3.46
2959	4755	3.097137	GAGCAGAGCGAGCGACGTA	62.097	63.158	0.00	0.00	44.60	3.57
3367	5361	6.094061	ACTTAACGAAGTCTTAGATGACTGC	58.906	40.000	0.00	0.00	45.00	4.40
3438	5432	6.919115	ACATCATATATACGTACGTTTGCACA	59.081	34.615	27.92	7.59	0.00	4.57
3448	5442	8.674607	CCAGCTCTTGTACATCATATATACGTA	58.325	37.037	0.00	0.00	0.00	3.57
3471	5465	1.254026	TAGTTGAGGTCGTGGTCCAG	58.746	55.000	0.00	0.00	0.00	3.86
3506	5501	2.691409	ATCTGTGTATTGGGTCCACG	57.309	50.000	0.00	0.00	31.75	4.94
3511	5506	4.502105	TGTGCATATCTGTGTATTGGGT	57.498	40.909	0.00	0.00	0.00	4.51
3649	5651	0.252558	ACACGTCCCTACCTCCCAAT	60.253	55.000	0.00	0.00	0.00	3.16
4064	6067	3.106827	TCTGTGGCACTATGGATCTTGA	58.893	45.455	19.83	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.