Multiple sequence alignment - TraesCS6B01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G294600 chr6B 100.000 5276 0 0 1 5276 528905890 528911165 0.000000e+00 9744.0
1 TraesCS6B01G294600 chr6B 95.652 414 8 6 2331 2739 670019661 670020069 0.000000e+00 656.0
2 TraesCS6B01G294600 chr6D 92.090 2364 134 32 1 2331 350936342 350933999 0.000000e+00 3280.0
3 TraesCS6B01G294600 chr6D 96.356 1811 45 12 2819 4620 350933950 350932152 0.000000e+00 2959.0
4 TraesCS6B01G294600 chr6A 94.210 1779 75 15 560 2331 492792178 492793935 0.000000e+00 2689.0
5 TraesCS6B01G294600 chr6A 96.545 984 29 3 2740 3722 492793925 492794904 0.000000e+00 1624.0
6 TraesCS6B01G294600 chr6A 95.703 861 32 3 3760 4620 492794908 492795763 0.000000e+00 1380.0
7 TraesCS6B01G294600 chr6A 90.977 399 32 4 1 397 492790304 492790700 7.780000e-148 534.0
8 TraesCS6B01G294600 chr6A 88.652 141 14 1 374 512 492791727 492791867 2.530000e-38 171.0
9 TraesCS6B01G294600 chr1B 94.385 659 29 2 4621 5276 21532856 21533509 0.000000e+00 1005.0
10 TraesCS6B01G294600 chr1B 90.855 667 48 9 4621 5276 652471696 652471032 0.000000e+00 881.0
11 TraesCS6B01G294600 chr1B 90.909 44 4 0 157 200 634459708 634459665 5.710000e-05 60.2
12 TraesCS6B01G294600 chr7B 94.127 664 31 4 4620 5275 23590689 23590026 0.000000e+00 1003.0
13 TraesCS6B01G294600 chr7B 94.377 409 18 5 2331 2739 22833417 22833014 1.610000e-174 623.0
14 TraesCS6B01G294600 chr2B 94.046 655 31 7 4621 5271 219915811 219916461 0.000000e+00 987.0
15 TraesCS6B01G294600 chr2B 93.313 658 34 2 4621 5275 737632766 737632116 0.000000e+00 963.0
16 TraesCS6B01G294600 chr2B 93.990 416 17 5 2329 2739 643205463 643205051 1.610000e-174 623.0
17 TraesCS6B01G294600 chr3A 91.212 660 50 8 4621 5276 701930744 701931399 0.000000e+00 891.0
18 TraesCS6B01G294600 chr5A 90.588 680 50 11 4607 5276 448103510 448102835 0.000000e+00 889.0
19 TraesCS6B01G294600 chr2A 91.311 656 47 9 4621 5270 717843487 717844138 0.000000e+00 887.0
20 TraesCS6B01G294600 chr2D 90.625 672 45 11 4621 5276 575682202 575682871 0.000000e+00 876.0
21 TraesCS6B01G294600 chr4B 94.393 428 9 9 2331 2752 633150029 633150447 1.240000e-180 643.0
22 TraesCS6B01G294600 chr4B 94.258 418 14 7 2331 2740 183514532 183514117 9.640000e-177 630.0
23 TraesCS6B01G294600 chr4A 94.189 413 18 4 2331 2739 713367083 713367493 4.490000e-175 625.0
24 TraesCS6B01G294600 chr5B 94.404 411 13 6 2332 2736 510815782 510816188 1.610000e-174 623.0
25 TraesCS6B01G294600 chr5B 93.750 416 19 5 2331 2742 36079473 36079061 7.510000e-173 617.0
26 TraesCS6B01G294600 chr3B 93.587 421 18 4 2326 2739 809182263 809182681 2.090000e-173 619.0
27 TraesCS6B01G294600 chr7D 100.000 31 0 0 169 199 60429415 60429445 2.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G294600 chr6B 528905890 528911165 5275 False 9744.0 9744 100.0000 1 5276 1 chr6B.!!$F1 5275
1 TraesCS6B01G294600 chr6D 350932152 350936342 4190 True 3119.5 3280 94.2230 1 4620 2 chr6D.!!$R1 4619
2 TraesCS6B01G294600 chr6A 492790304 492795763 5459 False 1279.6 2689 93.2174 1 4620 5 chr6A.!!$F1 4619
3 TraesCS6B01G294600 chr1B 21532856 21533509 653 False 1005.0 1005 94.3850 4621 5276 1 chr1B.!!$F1 655
4 TraesCS6B01G294600 chr1B 652471032 652471696 664 True 881.0 881 90.8550 4621 5276 1 chr1B.!!$R2 655
5 TraesCS6B01G294600 chr7B 23590026 23590689 663 True 1003.0 1003 94.1270 4620 5275 1 chr7B.!!$R2 655
6 TraesCS6B01G294600 chr2B 219915811 219916461 650 False 987.0 987 94.0460 4621 5271 1 chr2B.!!$F1 650
7 TraesCS6B01G294600 chr2B 737632116 737632766 650 True 963.0 963 93.3130 4621 5275 1 chr2B.!!$R2 654
8 TraesCS6B01G294600 chr3A 701930744 701931399 655 False 891.0 891 91.2120 4621 5276 1 chr3A.!!$F1 655
9 TraesCS6B01G294600 chr5A 448102835 448103510 675 True 889.0 889 90.5880 4607 5276 1 chr5A.!!$R1 669
10 TraesCS6B01G294600 chr2A 717843487 717844138 651 False 887.0 887 91.3110 4621 5270 1 chr2A.!!$F1 649
11 TraesCS6B01G294600 chr2D 575682202 575682871 669 False 876.0 876 90.6250 4621 5276 1 chr2D.!!$F1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 1891 0.035439 TCATGCCTCGTTTCTTCCCC 60.035 55.0 0.00 0.00 0.00 4.81 F
752 2075 1.033574 GATAGAGACCTCCACCGGTG 58.966 60.0 28.26 28.26 37.42 4.94 F
2585 3950 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.0 0.00 0.00 37.67 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 3085 0.249911 GGATGATCGGGAAGAACGGG 60.250 60.0 0.00 0.00 0.00 5.28 R
2722 4087 0.238553 GGTCGAAAGTGCCTTTCTGC 59.761 55.0 19.11 13.46 45.19 4.26 R
4294 5662 0.677842 ACACCGGTGGACTTCTGTAC 59.322 55.0 36.47 0.00 34.19 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 2.990066 ACATGAAGTCTTCGGGATCC 57.010 50.000 1.92 1.92 0.00 3.36
80 82 3.434024 CCTGCATGGTCCATTCATCAGTA 60.434 47.826 4.55 0.00 0.00 2.74
81 83 4.395625 CTGCATGGTCCATTCATCAGTAT 58.604 43.478 4.55 0.00 0.00 2.12
82 84 4.392047 TGCATGGTCCATTCATCAGTATC 58.608 43.478 0.00 0.00 0.00 2.24
83 85 3.434641 GCATGGTCCATTCATCAGTATCG 59.565 47.826 0.00 0.00 0.00 2.92
85 87 2.224281 TGGTCCATTCATCAGTATCGGC 60.224 50.000 0.00 0.00 0.00 5.54
108 111 1.453197 CCTTGGCCCGGTCCATAAC 60.453 63.158 4.33 0.00 35.77 1.89
110 113 0.834612 CTTGGCCCGGTCCATAACTA 59.165 55.000 4.33 0.00 35.77 2.24
113 116 1.692173 GGCCCGGTCCATAACTAGCA 61.692 60.000 0.00 0.00 0.00 3.49
188 192 2.032071 AGGCGTTTTGAGGGTCGG 59.968 61.111 0.00 0.00 0.00 4.79
199 203 1.380785 AGGGTCGGCGTTGGAGATA 60.381 57.895 6.85 0.00 0.00 1.98
202 206 1.549170 GGGTCGGCGTTGGAGATATAT 59.451 52.381 6.85 0.00 0.00 0.86
229 233 0.820891 GCATGATTCCACTCGGGCAT 60.821 55.000 0.00 0.00 36.21 4.40
285 289 3.365868 GCATTAACGCAACCATGAAGACA 60.366 43.478 0.00 0.00 0.00 3.41
368 372 7.534085 TTAATCACCTGTAACATAGAAAGCG 57.466 36.000 0.00 0.00 0.00 4.68
377 1431 6.640518 TGTAACATAGAAAGCGAAGGAGATT 58.359 36.000 0.00 0.00 0.00 2.40
415 1469 5.138276 AGCATCCATTCATCACTTGCTTAT 58.862 37.500 0.00 0.00 35.57 1.73
468 1522 5.296151 ACACAAGAACATTCTCTCCAGAA 57.704 39.130 0.00 0.00 43.06 3.02
471 1525 6.774656 ACACAAGAACATTCTCTCCAGAAAAT 59.225 34.615 0.00 0.00 42.14 1.82
473 1527 8.449397 CACAAGAACATTCTCTCCAGAAAATAG 58.551 37.037 0.00 0.00 42.14 1.73
475 1529 6.657875 AGAACATTCTCTCCAGAAAATAGGG 58.342 40.000 0.00 0.00 42.14 3.53
481 1535 4.969359 TCTCTCCAGAAAATAGGGTTAGGG 59.031 45.833 0.00 0.00 0.00 3.53
482 1536 4.045022 TCTCCAGAAAATAGGGTTAGGGG 58.955 47.826 0.00 0.00 0.00 4.79
483 1537 4.045022 CTCCAGAAAATAGGGTTAGGGGA 58.955 47.826 0.00 0.00 0.00 4.81
496 1552 5.077564 GGGTTAGGGGATTTTACCATCATC 58.922 45.833 0.00 0.00 0.00 2.92
514 1570 0.044092 TCATGAGGGGCCTGAACCTA 59.956 55.000 0.84 0.00 37.18 3.08
523 1579 3.908103 GGGGCCTGAACCTATATACTTCA 59.092 47.826 0.84 0.33 0.00 3.02
527 1583 6.465894 GGGCCTGAACCTATATACTTCATTGT 60.466 42.308 0.84 0.00 0.00 2.71
528 1584 7.256547 GGGCCTGAACCTATATACTTCATTGTA 60.257 40.741 0.84 0.00 0.00 2.41
529 1585 8.154856 GGCCTGAACCTATATACTTCATTGTAA 58.845 37.037 0.00 0.00 0.00 2.41
554 1610 1.376543 CCTGCGTCTTGCTTGATCAT 58.623 50.000 0.00 0.00 46.63 2.45
570 1891 0.035439 TCATGCCTCGTTTCTTCCCC 60.035 55.000 0.00 0.00 0.00 4.81
586 1907 4.776308 TCTTCCCCCTCTTACTGTTAGAAC 59.224 45.833 0.00 0.00 0.00 3.01
601 1922 2.910688 AGAACTCACACCACGACAAT 57.089 45.000 0.00 0.00 0.00 2.71
622 1943 1.063174 GCTTGTGATGAAGATGCGACC 59.937 52.381 0.00 0.00 0.00 4.79
657 1979 1.292223 GCTGCCCAAGACTACGTGA 59.708 57.895 0.00 0.00 0.00 4.35
750 2073 1.173444 CCGATAGAGACCTCCACCGG 61.173 65.000 0.00 0.00 39.76 5.28
752 2075 1.033574 GATAGAGACCTCCACCGGTG 58.966 60.000 28.26 28.26 37.42 4.94
829 2154 2.748532 AGTTAGTAGTCAGTCGCCAGTC 59.251 50.000 0.00 0.00 0.00 3.51
836 2161 1.735920 CAGTCGCCAGTCAGTCAGC 60.736 63.158 0.00 0.00 0.00 4.26
844 2169 4.314440 GTCAGTCAGCCCACCGCA 62.314 66.667 0.00 0.00 41.38 5.69
890 2216 1.768870 CACCCACCGATTCCCTTCTAT 59.231 52.381 0.00 0.00 0.00 1.98
954 2280 4.308458 CACCCGACGCTTCCACCA 62.308 66.667 0.00 0.00 0.00 4.17
970 2296 2.825836 CACCCGAATCCAGCCAGC 60.826 66.667 0.00 0.00 0.00 4.85
972 2298 4.113815 CCCGAATCCAGCCAGCCA 62.114 66.667 0.00 0.00 0.00 4.75
973 2299 2.515523 CCGAATCCAGCCAGCCAG 60.516 66.667 0.00 0.00 0.00 4.85
1358 2684 2.475371 ATCTCCCGTTTGCTGCTGCT 62.475 55.000 17.00 0.00 40.48 4.24
1364 2690 1.900498 GTTTGCTGCTGCTGAGGGT 60.900 57.895 17.00 0.00 40.48 4.34
1367 2693 2.282040 GCTGCTGCTGAGGGTGTT 60.282 61.111 10.92 0.00 36.03 3.32
1441 2767 1.271054 GGCAAGGAAAGTGAGCTCTCA 60.271 52.381 16.19 0.00 37.24 3.27
1521 2847 8.463930 TGTCTTGGATTCTTACAGTTGATTTT 57.536 30.769 0.00 0.00 0.00 1.82
1659 2987 2.629051 GGTACGCTTCTACCTGCATTT 58.371 47.619 0.00 0.00 34.34 2.32
1686 3014 7.880195 GGTCTACATCAGTGGATAAATTATGCT 59.120 37.037 6.10 0.00 37.58 3.79
1710 3038 7.148356 GCTCTCATGAAACTGTGTATTGAATCA 60.148 37.037 0.00 0.00 0.00 2.57
1712 3040 9.234827 TCTCATGAAACTGTGTATTGAATCATT 57.765 29.630 0.00 0.00 0.00 2.57
1867 3195 1.334054 GGTAACTACGCACACACTCG 58.666 55.000 0.00 0.00 0.00 4.18
1898 3226 3.305335 CGGTTTTAAGAGGCAGCATTGTT 60.305 43.478 0.00 0.00 0.00 2.83
1935 3263 6.151691 CGATATTTGGGGTTGCAATAATCTG 58.848 40.000 0.59 0.00 0.00 2.90
2038 3366 8.834749 ACCTTCTTCTAGTTAGTTTTCATGTC 57.165 34.615 0.00 0.00 0.00 3.06
2041 3369 9.145865 CTTCTTCTAGTTAGTTTTCATGTCCTC 57.854 37.037 0.00 0.00 0.00 3.71
2042 3370 8.423906 TCTTCTAGTTAGTTTTCATGTCCTCT 57.576 34.615 0.00 0.00 0.00 3.69
2116 3477 5.980116 CGAGTGCTAGTCTTATTGTGCTATT 59.020 40.000 0.00 0.00 0.00 1.73
2117 3478 7.139392 CGAGTGCTAGTCTTATTGTGCTATTA 58.861 38.462 0.00 0.00 0.00 0.98
2118 3479 7.810282 CGAGTGCTAGTCTTATTGTGCTATTAT 59.190 37.037 0.00 0.00 0.00 1.28
2140 3501 8.504812 TTATTATGTCTTGTAATGCAGCAGAA 57.495 30.769 0.00 0.00 0.00 3.02
2201 3562 8.161425 TCTAAACTGTTTTTCCTGGCTACTATT 58.839 33.333 11.48 0.00 0.00 1.73
2204 3565 8.879427 AACTGTTTTTCCTGGCTACTATTTAT 57.121 30.769 0.00 0.00 0.00 1.40
2341 3706 2.169832 CAGTTCATGGACGTGGAGTT 57.830 50.000 0.00 0.00 0.00 3.01
2342 3707 2.494059 CAGTTCATGGACGTGGAGTTT 58.506 47.619 0.00 0.00 0.00 2.66
2343 3708 2.480419 CAGTTCATGGACGTGGAGTTTC 59.520 50.000 0.00 0.00 0.00 2.78
2344 3709 2.368875 AGTTCATGGACGTGGAGTTTCT 59.631 45.455 0.00 0.00 0.00 2.52
2345 3710 2.455674 TCATGGACGTGGAGTTTCTG 57.544 50.000 0.00 0.00 0.00 3.02
2346 3711 0.798776 CATGGACGTGGAGTTTCTGC 59.201 55.000 0.00 0.00 0.00 4.26
2347 3712 0.396435 ATGGACGTGGAGTTTCTGCA 59.604 50.000 0.00 0.00 0.00 4.41
2348 3713 0.531974 TGGACGTGGAGTTTCTGCAC 60.532 55.000 10.52 10.52 46.73 4.57
2351 3716 3.655481 GTGGAGTTTCTGCACCCG 58.345 61.111 9.63 0.00 44.99 5.28
2352 3717 1.070786 GTGGAGTTTCTGCACCCGA 59.929 57.895 9.63 0.00 44.99 5.14
2353 3718 0.951040 GTGGAGTTTCTGCACCCGAG 60.951 60.000 9.63 0.00 44.99 4.63
2354 3719 2.035442 GGAGTTTCTGCACCCGAGC 61.035 63.158 0.00 0.00 0.00 5.03
2355 3720 1.004440 GAGTTTCTGCACCCGAGCT 60.004 57.895 0.00 0.00 34.99 4.09
2356 3721 1.004440 AGTTTCTGCACCCGAGCTC 60.004 57.895 2.73 2.73 34.99 4.09
2357 3722 1.301716 GTTTCTGCACCCGAGCTCA 60.302 57.895 15.40 0.00 34.99 4.26
2358 3723 0.674895 GTTTCTGCACCCGAGCTCAT 60.675 55.000 15.40 0.00 34.99 2.90
2359 3724 0.901827 TTTCTGCACCCGAGCTCATA 59.098 50.000 15.40 0.00 34.99 2.15
2360 3725 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
2361 3726 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
2362 3727 0.390492 CTGCACCCGAGCTCATATGA 59.610 55.000 15.40 5.07 34.99 2.15
2363 3728 0.390492 TGCACCCGAGCTCATATGAG 59.610 55.000 25.64 25.64 44.75 2.90
2374 3739 2.748605 CTCATATGAGCTCGGGTGAAC 58.251 52.381 19.47 0.00 35.13 3.18
2375 3740 2.101415 CTCATATGAGCTCGGGTGAACA 59.899 50.000 19.47 0.00 35.13 3.18
2376 3741 2.101415 TCATATGAGCTCGGGTGAACAG 59.899 50.000 9.64 0.00 0.00 3.16
2377 3742 1.557099 TATGAGCTCGGGTGAACAGT 58.443 50.000 9.64 0.00 0.00 3.55
2378 3743 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
2379 3744 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
2380 3745 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
2381 3746 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
2382 3747 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
2383 3748 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
2384 3749 2.093783 GCTCGGGTGAACAGTAAAATCG 59.906 50.000 0.00 0.00 0.00 3.34
2385 3750 3.581755 CTCGGGTGAACAGTAAAATCGA 58.418 45.455 0.00 0.00 0.00 3.59
2386 3751 3.991773 CTCGGGTGAACAGTAAAATCGAA 59.008 43.478 0.00 0.00 0.00 3.71
2387 3752 4.378774 TCGGGTGAACAGTAAAATCGAAA 58.621 39.130 0.00 0.00 0.00 3.46
2388 3753 4.815308 TCGGGTGAACAGTAAAATCGAAAA 59.185 37.500 0.00 0.00 0.00 2.29
2389 3754 5.296283 TCGGGTGAACAGTAAAATCGAAAAA 59.704 36.000 0.00 0.00 0.00 1.94
2455 3820 8.655970 AGAAACATTGACAAAAGTTTTAAGTGC 58.344 29.630 17.76 8.51 37.33 4.40
2456 3821 8.546597 AAACATTGACAAAAGTTTTAAGTGCT 57.453 26.923 13.35 0.00 34.43 4.40
2457 3822 8.546597 AACATTGACAAAAGTTTTAAGTGCTT 57.453 26.923 0.00 0.00 0.00 3.91
2458 3823 7.962917 ACATTGACAAAAGTTTTAAGTGCTTG 58.037 30.769 0.00 0.00 0.00 4.01
2459 3824 6.401955 TTGACAAAAGTTTTAAGTGCTTGC 57.598 33.333 0.00 0.00 0.00 4.01
2460 3825 5.473931 TGACAAAAGTTTTAAGTGCTTGCA 58.526 33.333 0.00 0.00 0.00 4.08
2461 3826 5.928839 TGACAAAAGTTTTAAGTGCTTGCAA 59.071 32.000 0.00 0.00 0.00 4.08
2462 3827 6.425114 TGACAAAAGTTTTAAGTGCTTGCAAA 59.575 30.769 0.00 0.00 0.00 3.68
2463 3828 7.041780 TGACAAAAGTTTTAAGTGCTTGCAAAA 60.042 29.630 0.00 0.00 0.00 2.44
2464 3829 7.643579 ACAAAAGTTTTAAGTGCTTGCAAAAA 58.356 26.923 0.00 0.00 0.00 1.94
2465 3830 8.296000 ACAAAAGTTTTAAGTGCTTGCAAAAAT 58.704 25.926 0.00 0.00 0.00 1.82
2466 3831 9.127006 CAAAAGTTTTAAGTGCTTGCAAAAATT 57.873 25.926 0.00 0.00 31.70 1.82
2467 3832 8.894409 AAAGTTTTAAGTGCTTGCAAAAATTC 57.106 26.923 0.00 0.00 29.83 2.17
2468 3833 6.704819 AGTTTTAAGTGCTTGCAAAAATTCG 58.295 32.000 0.00 0.00 0.00 3.34
2469 3834 6.312672 AGTTTTAAGTGCTTGCAAAAATTCGT 59.687 30.769 0.00 0.00 0.00 3.85
2470 3835 5.881637 TTAAGTGCTTGCAAAAATTCGTC 57.118 34.783 0.00 0.00 0.00 4.20
2471 3836 3.435105 AGTGCTTGCAAAAATTCGTCA 57.565 38.095 0.00 0.00 0.00 4.35
2472 3837 3.981211 AGTGCTTGCAAAAATTCGTCAT 58.019 36.364 0.00 0.00 0.00 3.06
2473 3838 3.737266 AGTGCTTGCAAAAATTCGTCATG 59.263 39.130 0.00 0.00 0.00 3.07
2474 3839 3.735240 GTGCTTGCAAAAATTCGTCATGA 59.265 39.130 0.00 0.00 0.00 3.07
2475 3840 4.208873 GTGCTTGCAAAAATTCGTCATGAA 59.791 37.500 0.00 0.00 41.81 2.57
2476 3841 4.807834 TGCTTGCAAAAATTCGTCATGAAA 59.192 33.333 0.00 0.00 40.71 2.69
2477 3842 5.466058 TGCTTGCAAAAATTCGTCATGAAAT 59.534 32.000 0.00 0.00 40.71 2.17
2478 3843 6.011277 GCTTGCAAAAATTCGTCATGAAATC 58.989 36.000 0.00 0.00 40.71 2.17
2479 3844 6.346758 GCTTGCAAAAATTCGTCATGAAATCA 60.347 34.615 0.00 0.00 40.71 2.57
2480 3845 6.450845 TGCAAAAATTCGTCATGAAATCAC 57.549 33.333 0.00 0.00 40.71 3.06
2481 3846 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
2482 3847 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
2483 3848 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
2484 3849 8.011106 GCAAAAATTCGTCATGAAATCACATTT 58.989 29.630 0.00 0.00 40.71 2.32
2485 3850 9.519905 CAAAAATTCGTCATGAAATCACATTTC 57.480 29.630 0.00 2.55 46.75 2.17
2486 3851 9.480053 AAAAATTCGTCATGAAATCACATTTCT 57.520 25.926 0.00 0.00 46.71 2.52
2488 3853 9.778993 AAATTCGTCATGAAATCACATTTCTAG 57.221 29.630 0.00 3.72 46.71 2.43
2489 3854 8.722480 ATTCGTCATGAAATCACATTTCTAGA 57.278 30.769 0.00 0.00 46.71 2.43
2490 3855 8.546597 TTCGTCATGAAATCACATTTCTAGAA 57.453 30.769 0.00 0.00 46.71 2.10
2491 3856 8.189709 TCGTCATGAAATCACATTTCTAGAAG 57.810 34.615 5.12 0.00 46.71 2.85
2492 3857 7.278646 TCGTCATGAAATCACATTTCTAGAAGG 59.721 37.037 5.12 5.08 46.71 3.46
2493 3858 7.192232 GTCATGAAATCACATTTCTAGAAGGC 58.808 38.462 5.12 0.00 46.71 4.35
2494 3859 5.801350 TGAAATCACATTTCTAGAAGGCG 57.199 39.130 5.12 1.16 46.71 5.52
2495 3860 5.245531 TGAAATCACATTTCTAGAAGGCGT 58.754 37.500 5.12 1.78 46.71 5.68
2496 3861 5.122239 TGAAATCACATTTCTAGAAGGCGTG 59.878 40.000 18.08 18.08 46.71 5.34
2497 3862 2.972625 TCACATTTCTAGAAGGCGTGG 58.027 47.619 21.32 7.48 0.00 4.94
2498 3863 1.398390 CACATTTCTAGAAGGCGTGGC 59.602 52.381 17.07 0.00 0.00 5.01
2499 3864 1.003118 ACATTTCTAGAAGGCGTGGCA 59.997 47.619 5.12 0.00 0.00 4.92
2500 3865 2.083774 CATTTCTAGAAGGCGTGGCAA 58.916 47.619 5.12 0.00 0.00 4.52
2501 3866 2.264005 TTTCTAGAAGGCGTGGCAAA 57.736 45.000 5.12 0.00 0.00 3.68
2502 3867 2.264005 TTCTAGAAGGCGTGGCAAAA 57.736 45.000 0.00 0.00 0.00 2.44
2503 3868 2.264005 TCTAGAAGGCGTGGCAAAAA 57.736 45.000 0.00 0.00 0.00 1.94
2530 3895 8.723942 AAAATCGATACTCTGAAAATGCTACT 57.276 30.769 0.00 0.00 0.00 2.57
2531 3896 8.723942 AAATCGATACTCTGAAAATGCTACTT 57.276 30.769 0.00 0.00 0.00 2.24
2532 3897 8.723942 AATCGATACTCTGAAAATGCTACTTT 57.276 30.769 0.00 0.00 0.00 2.66
2533 3898 7.757097 TCGATACTCTGAAAATGCTACTTTC 57.243 36.000 0.00 0.00 34.09 2.62
2534 3899 7.320399 TCGATACTCTGAAAATGCTACTTTCA 58.680 34.615 7.77 7.77 39.79 2.69
2535 3900 7.817478 TCGATACTCTGAAAATGCTACTTTCAA 59.183 33.333 8.91 0.00 41.10 2.69
2536 3901 8.443160 CGATACTCTGAAAATGCTACTTTCAAA 58.557 33.333 8.91 0.00 41.10 2.69
2539 3904 6.920210 ACTCTGAAAATGCTACTTTCAAAAGC 59.080 34.615 2.43 0.00 41.10 3.51
2556 3921 4.628963 AAAGCATTTTGGAGGCTGAATT 57.371 36.364 0.00 0.00 31.62 2.17
2557 3922 4.628963 AAGCATTTTGGAGGCTGAATTT 57.371 36.364 0.00 0.00 38.04 1.82
2558 3923 3.934068 AGCATTTTGGAGGCTGAATTTG 58.066 40.909 0.00 0.00 36.34 2.32
2559 3924 3.325716 AGCATTTTGGAGGCTGAATTTGT 59.674 39.130 0.00 0.00 36.34 2.83
2560 3925 4.067192 GCATTTTGGAGGCTGAATTTGTT 58.933 39.130 0.00 0.00 0.00 2.83
2561 3926 4.516321 GCATTTTGGAGGCTGAATTTGTTT 59.484 37.500 0.00 0.00 0.00 2.83
2562 3927 5.008911 GCATTTTGGAGGCTGAATTTGTTTT 59.991 36.000 0.00 0.00 0.00 2.43
2563 3928 6.459985 GCATTTTGGAGGCTGAATTTGTTTTT 60.460 34.615 0.00 0.00 0.00 1.94
2582 3947 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
2583 3948 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
2584 3949 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
2585 3950 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
2586 3951 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
2587 3952 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
2588 3953 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
2589 3954 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
2590 3955 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
2591 3956 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
2592 3957 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
2593 3958 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
2594 3959 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
2595 3960 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
2596 3961 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
2597 3962 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
2598 3963 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
2599 3964 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
2600 3965 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
2601 3966 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
2602 3967 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
2603 3968 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
2604 3969 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
2605 3970 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
2606 3971 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
2607 3972 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
2608 3973 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
2609 3974 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
2610 3975 8.379457 TGTGATTTCATGATGAATTTTTGCAA 57.621 26.923 8.90 0.00 36.11 4.08
2611 3976 8.499967 TGTGATTTCATGATGAATTTTTGCAAG 58.500 29.630 8.90 0.00 36.11 4.01
2612 3977 7.480542 GTGATTTCATGATGAATTTTTGCAAGC 59.519 33.333 8.90 0.00 36.11 4.01
2613 3978 6.862711 TTTCATGATGAATTTTTGCAAGCA 57.137 29.167 8.90 0.00 36.11 3.91
2614 3979 5.849357 TCATGATGAATTTTTGCAAGCAC 57.151 34.783 0.00 0.00 0.00 4.40
2615 3980 5.543714 TCATGATGAATTTTTGCAAGCACT 58.456 33.333 0.00 0.00 0.00 4.40
2616 3981 5.992829 TCATGATGAATTTTTGCAAGCACTT 59.007 32.000 0.00 0.00 0.00 3.16
2617 3982 7.153315 TCATGATGAATTTTTGCAAGCACTTA 58.847 30.769 0.00 0.00 0.00 2.24
2618 3983 7.329962 TCATGATGAATTTTTGCAAGCACTTAG 59.670 33.333 0.00 0.00 0.00 2.18
2619 3984 6.747125 TGATGAATTTTTGCAAGCACTTAGA 58.253 32.000 0.00 0.00 0.00 2.10
2620 3985 7.208777 TGATGAATTTTTGCAAGCACTTAGAA 58.791 30.769 0.00 0.00 0.00 2.10
2621 3986 6.826893 TGAATTTTTGCAAGCACTTAGAAC 57.173 33.333 0.00 0.00 0.00 3.01
2622 3987 6.572519 TGAATTTTTGCAAGCACTTAGAACT 58.427 32.000 0.00 0.00 0.00 3.01
2623 3988 7.041107 TGAATTTTTGCAAGCACTTAGAACTT 58.959 30.769 0.00 0.00 0.00 2.66
2624 3989 7.548780 TGAATTTTTGCAAGCACTTAGAACTTT 59.451 29.630 0.00 0.00 0.00 2.66
2625 3990 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
2626 3991 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
2627 3992 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
2628 3993 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
2629 3994 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
2630 3995 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
2631 3996 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
2632 3997 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
2633 3998 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
2634 3999 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
2635 4000 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
2636 4001 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
2637 4002 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
2638 4003 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
2639 4004 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
2640 4005 9.443283 CTTAGAACTTTTGTCAATGTTTCTCTG 57.557 33.333 6.42 0.64 31.96 3.35
2641 4006 7.630242 AGAACTTTTGTCAATGTTTCTCTGA 57.370 32.000 6.10 0.00 31.96 3.27
2642 4007 7.701445 AGAACTTTTGTCAATGTTTCTCTGAG 58.299 34.615 0.00 0.00 31.96 3.35
2643 4008 7.554118 AGAACTTTTGTCAATGTTTCTCTGAGA 59.446 33.333 2.58 2.58 31.96 3.27
2644 4009 7.630242 ACTTTTGTCAATGTTTCTCTGAGAA 57.370 32.000 15.82 15.82 31.28 2.87
2645 4010 8.230472 ACTTTTGTCAATGTTTCTCTGAGAAT 57.770 30.769 19.93 3.66 33.67 2.40
2646 4011 8.689972 ACTTTTGTCAATGTTTCTCTGAGAATT 58.310 29.630 19.93 9.54 33.67 2.17
2647 4012 9.525409 CTTTTGTCAATGTTTCTCTGAGAATTT 57.475 29.630 19.93 11.63 33.67 1.82
2648 4013 9.874205 TTTTGTCAATGTTTCTCTGAGAATTTT 57.126 25.926 19.93 11.32 33.67 1.82
2649 4014 9.874205 TTTGTCAATGTTTCTCTGAGAATTTTT 57.126 25.926 19.93 11.02 33.67 1.94
2703 4068 5.987777 TTTTCGATTTTACTGTTCACCGA 57.012 34.783 0.00 0.00 0.00 4.69
2704 4069 5.585500 TTTCGATTTTACTGTTCACCGAG 57.415 39.130 0.00 0.00 0.00 4.63
2705 4070 2.991190 TCGATTTTACTGTTCACCGAGC 59.009 45.455 0.00 0.00 0.00 5.03
2706 4071 2.993899 CGATTTTACTGTTCACCGAGCT 59.006 45.455 0.00 0.00 0.00 4.09
2707 4072 3.060895 CGATTTTACTGTTCACCGAGCTC 59.939 47.826 2.73 2.73 0.00 4.09
2708 4073 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
2709 4074 3.462483 TTTACTGTTCACCGAGCTCAA 57.538 42.857 15.40 0.00 0.00 3.02
2710 4075 3.462483 TTACTGTTCACCGAGCTCAAA 57.538 42.857 15.40 0.00 0.00 2.69
2711 4076 2.550830 ACTGTTCACCGAGCTCAAAT 57.449 45.000 15.40 0.00 0.00 2.32
2712 4077 2.146342 ACTGTTCACCGAGCTCAAATG 58.854 47.619 15.40 8.47 0.00 2.32
2713 4078 2.224281 ACTGTTCACCGAGCTCAAATGA 60.224 45.455 15.40 10.78 0.00 2.57
2714 4079 2.414481 CTGTTCACCGAGCTCAAATGAG 59.586 50.000 15.40 6.05 44.75 2.90
2732 4097 2.665000 CTCGGGAGCAGAAAGGCA 59.335 61.111 0.00 0.00 35.83 4.75
2733 4098 1.743252 CTCGGGAGCAGAAAGGCAC 60.743 63.158 0.00 0.00 35.83 5.01
2746 4111 3.307379 AGGCACTTTCGACCAGTTC 57.693 52.632 0.00 0.00 27.25 3.01
2747 4112 0.468226 AGGCACTTTCGACCAGTTCA 59.532 50.000 0.00 0.00 27.25 3.18
2748 4113 1.072331 AGGCACTTTCGACCAGTTCAT 59.928 47.619 0.00 0.00 27.25 2.57
2749 4114 1.197721 GGCACTTTCGACCAGTTCATG 59.802 52.381 0.00 0.00 0.00 3.07
2750 4115 1.400242 GCACTTTCGACCAGTTCATGC 60.400 52.381 0.00 0.00 0.00 4.06
2751 4116 1.197721 CACTTTCGACCAGTTCATGCC 59.802 52.381 0.00 0.00 0.00 4.40
2752 4117 1.202758 ACTTTCGACCAGTTCATGCCA 60.203 47.619 0.00 0.00 0.00 4.92
2753 4118 2.086869 CTTTCGACCAGTTCATGCCAT 58.913 47.619 0.00 0.00 0.00 4.40
2754 4119 3.270027 CTTTCGACCAGTTCATGCCATA 58.730 45.455 0.00 0.00 0.00 2.74
2755 4120 2.309528 TCGACCAGTTCATGCCATAC 57.690 50.000 0.00 0.00 0.00 2.39
2761 4126 3.264193 ACCAGTTCATGCCATACTTCTGA 59.736 43.478 0.00 0.00 0.00 3.27
2906 4271 9.826574 AGTAGTGGCTTTATGTTTAATATTCGA 57.173 29.630 0.00 0.00 0.00 3.71
2998 4363 5.066505 GTCTTGATGAACTTGTGGTTTCTGT 59.933 40.000 0.00 0.00 38.41 3.41
3147 4512 8.601476 GGGAAGTCATTAACGTAAGATAACTTG 58.399 37.037 6.81 0.00 37.42 3.16
3421 4786 6.812160 ACAGACGGACATGTTTCTATTTCTAC 59.188 38.462 0.00 0.00 0.00 2.59
3522 4888 3.320541 TGTCGGATTTGCCTTGTTTTCAT 59.679 39.130 0.00 0.00 0.00 2.57
3597 4963 3.333219 TCTGCCCCTTGCCTCCTG 61.333 66.667 0.00 0.00 40.16 3.86
3614 4980 3.267483 TCCTGTTCTGCCTTTATTACGC 58.733 45.455 0.00 0.00 0.00 4.42
3838 5204 2.660670 TACTCCTGCCCTCTAGCTAC 57.339 55.000 0.00 0.00 0.00 3.58
4111 5479 2.553602 TGAGCGAGCATGTCACATTTTT 59.446 40.909 0.00 0.00 0.00 1.94
4285 5653 1.959085 CACAAGTGAAGCGGGCAAT 59.041 52.632 0.00 0.00 0.00 3.56
4294 5662 0.890683 AAGCGGGCAATGGAAGAAAG 59.109 50.000 0.00 0.00 0.00 2.62
4507 5875 5.014202 TGTTTAAAGCCTTGGATCTTACCC 58.986 41.667 0.00 0.00 0.00 3.69
4516 5884 6.332901 AGCCTTGGATCTTACCCATATAAACT 59.667 38.462 0.00 0.00 33.04 2.66
4573 5941 7.273164 TCGCTAGTTTGTTTGCATATTTGATTG 59.727 33.333 0.00 0.00 0.00 2.67
4597 5965 0.888285 GCTGGTGAGCTGCTGTCTTT 60.888 55.000 7.01 0.00 42.52 2.52
4598 5966 0.873054 CTGGTGAGCTGCTGTCTTTG 59.127 55.000 7.01 0.00 0.00 2.77
4633 6007 3.128764 GGTAGTTGGTGCTGGAATTTAGC 59.871 47.826 8.28 8.28 41.49 3.09
4812 6193 5.173664 TCACTTGTATGAGCATGAGAACAG 58.826 41.667 0.00 0.00 0.00 3.16
4823 6204 2.630889 TGAGAACAGGAGGGACATCT 57.369 50.000 0.00 0.00 0.00 2.90
4835 6216 4.907034 ACATCTACGCGCGCTCCG 62.907 66.667 32.58 16.59 40.75 4.63
4891 6295 2.954684 TTGCGGGAATGAGCCGAGT 61.955 57.895 0.00 0.00 0.00 4.18
4892 6296 2.125106 GCGGGAATGAGCCGAGTT 60.125 61.111 0.00 0.00 0.00 3.01
4909 6313 6.016276 AGCCGAGTTGATGTCTAAATTTTTGT 60.016 34.615 0.00 0.00 0.00 2.83
5117 6521 1.429463 CAAGACGCACCAGAACTACC 58.571 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.752030 TGAGGATCCCGAAGACTTCAT 58.248 47.619 15.36 1.31 0.00 2.57
15 16 2.962421 AGATGAGGATCCCGAAGACTTC 59.038 50.000 8.55 5.03 0.00 3.01
30 32 4.283678 GTCCTCGACGTAATCAAGATGAG 58.716 47.826 0.00 0.00 0.00 2.90
101 104 3.712016 TGTTGGCTTGCTAGTTATGGA 57.288 42.857 0.00 0.00 0.00 3.41
108 111 2.098117 GCTTACCATGTTGGCTTGCTAG 59.902 50.000 0.00 0.00 42.67 3.42
110 113 0.890683 GCTTACCATGTTGGCTTGCT 59.109 50.000 0.00 0.00 42.67 3.91
113 116 1.256812 GGTGCTTACCATGTTGGCTT 58.743 50.000 0.00 0.00 42.67 4.35
155 159 1.216977 CCTGCATACGTTCGGACCA 59.783 57.895 0.00 0.00 0.00 4.02
188 192 7.421530 TGCTTCTTTAATATATCTCCAACGC 57.578 36.000 0.00 0.00 0.00 4.84
199 203 7.173907 CCGAGTGGAATCATGCTTCTTTAATAT 59.826 37.037 9.04 0.00 37.49 1.28
202 206 4.635765 CCGAGTGGAATCATGCTTCTTTAA 59.364 41.667 9.04 0.00 37.49 1.52
229 233 3.355378 CATCTGGTCATTGGGTTGCTTA 58.645 45.455 0.00 0.00 0.00 3.09
285 289 4.202461 ACGGGTGTCTTGATATAATGCCAT 60.202 41.667 0.00 0.00 0.00 4.40
290 294 9.085645 TCATAGTAACGGGTGTCTTGATATAAT 57.914 33.333 0.00 0.00 0.00 1.28
415 1469 5.011738 TTGTGTTTACAAGGTTTCAAACCCA 59.988 36.000 16.21 1.86 42.45 4.51
468 1522 6.677776 TGGTAAAATCCCCTAACCCTATTT 57.322 37.500 0.00 0.00 0.00 1.40
471 1525 5.298633 TGATGGTAAAATCCCCTAACCCTA 58.701 41.667 0.00 0.00 0.00 3.53
473 1527 4.529716 TGATGGTAAAATCCCCTAACCC 57.470 45.455 0.00 0.00 0.00 4.11
475 1529 7.004086 TCATGATGATGGTAAAATCCCCTAAC 58.996 38.462 0.00 0.00 0.00 2.34
481 1535 4.768968 CCCCTCATGATGATGGTAAAATCC 59.231 45.833 14.38 0.00 31.25 3.01
482 1536 4.219288 GCCCCTCATGATGATGGTAAAATC 59.781 45.833 14.38 0.00 31.25 2.17
483 1537 4.154942 GCCCCTCATGATGATGGTAAAAT 58.845 43.478 14.38 0.00 31.25 1.82
496 1552 1.143813 ATAGGTTCAGGCCCCTCATG 58.856 55.000 0.00 0.00 32.08 3.07
514 1570 6.601332 CAGGGGGTGTTACAATGAAGTATAT 58.399 40.000 0.00 0.00 0.00 0.86
523 1579 0.322187 GACGCAGGGGGTGTTACAAT 60.322 55.000 0.00 0.00 41.19 2.71
527 1583 1.373435 CAAGACGCAGGGGGTGTTA 59.627 57.895 0.00 0.00 41.19 2.41
528 1584 2.113139 CAAGACGCAGGGGGTGTT 59.887 61.111 0.00 0.00 41.19 3.32
529 1585 4.643387 GCAAGACGCAGGGGGTGT 62.643 66.667 0.00 0.00 44.56 4.16
554 1610 1.838073 GAGGGGGAAGAAACGAGGCA 61.838 60.000 0.00 0.00 0.00 4.75
570 1891 5.010719 TGGTGTGAGTTCTAACAGTAAGAGG 59.989 44.000 0.00 0.00 0.00 3.69
586 1907 1.069703 CAAGCATTGTCGTGGTGTGAG 60.070 52.381 0.00 0.00 42.34 3.51
601 1922 1.733912 GTCGCATCTTCATCACAAGCA 59.266 47.619 0.00 0.00 0.00 3.91
607 1928 2.093306 AAACGGTCGCATCTTCATCA 57.907 45.000 0.00 0.00 0.00 3.07
657 1979 1.536331 GACTCGGTTGTCTCTCTCGTT 59.464 52.381 0.00 0.00 34.39 3.85
707 2030 3.006323 GGTCTTCCGCACTATCAGATCAT 59.994 47.826 0.00 0.00 0.00 2.45
750 2073 3.993103 CGATAAGCGTCGGTCCAC 58.007 61.111 0.00 0.00 37.94 4.02
778 2101 1.961793 TCAGGTTCAAGTTGTTCGGG 58.038 50.000 2.11 0.00 0.00 5.14
890 2216 2.520020 ACGGTGTGACACGGGAGA 60.520 61.111 24.00 0.00 38.67 3.71
913 2239 2.649531 TGATCGGTGGTTTGGTCTTT 57.350 45.000 0.00 0.00 0.00 2.52
914 2240 2.879103 ATGATCGGTGGTTTGGTCTT 57.121 45.000 0.00 0.00 0.00 3.01
954 2280 4.115199 GGCTGGCTGGATTCGGGT 62.115 66.667 0.00 0.00 0.00 5.28
1125 2451 1.816074 AAATTCAAACGCCGGAGCTA 58.184 45.000 5.05 0.00 36.60 3.32
1358 2684 1.943968 GCACGCTCAATAACACCCTCA 60.944 52.381 0.00 0.00 0.00 3.86
1364 2690 2.610433 CAGAGAGCACGCTCAATAACA 58.390 47.619 20.51 0.00 44.99 2.41
1367 2693 3.352447 GCAGAGAGCACGCTCAATA 57.648 52.632 20.51 0.00 44.99 1.90
1441 2767 1.196766 TGAGATCTGCCTGCCACTGT 61.197 55.000 0.00 0.00 0.00 3.55
1567 2893 7.552848 AATTCAAAATTGAGAACGACGAATG 57.447 32.000 0.00 0.00 38.61 2.67
1568 2894 8.574196 AAAATTCAAAATTGAGAACGACGAAT 57.426 26.923 0.00 0.00 38.61 3.34
1652 2980 3.376234 CCACTGATGTAGACCAAATGCAG 59.624 47.826 0.00 0.00 0.00 4.41
1659 2987 7.661437 GCATAATTTATCCACTGATGTAGACCA 59.339 37.037 0.00 0.00 32.18 4.02
1686 3014 8.797350 ATGATTCAATACACAGTTTCATGAGA 57.203 30.769 0.00 0.00 0.00 3.27
1710 3038 4.889409 CACCCCAGCTACATGATAACAAAT 59.111 41.667 0.00 0.00 0.00 2.32
1712 3040 3.884895 CACCCCAGCTACATGATAACAA 58.115 45.455 0.00 0.00 0.00 2.83
1757 3085 0.249911 GGATGATCGGGAAGAACGGG 60.250 60.000 0.00 0.00 0.00 5.28
1769 3097 1.331756 GCAATGTCGTGGTGGATGATC 59.668 52.381 0.00 0.00 0.00 2.92
1867 3195 3.866327 GCCTCTTAAAACCGATCTCTCAC 59.134 47.826 0.00 0.00 0.00 3.51
1873 3201 2.356135 TGCTGCCTCTTAAAACCGATC 58.644 47.619 0.00 0.00 0.00 3.69
1875 3203 2.487762 CAATGCTGCCTCTTAAAACCGA 59.512 45.455 0.00 0.00 0.00 4.69
1877 3205 3.942130 ACAATGCTGCCTCTTAAAACC 57.058 42.857 0.00 0.00 0.00 3.27
1898 3226 6.070653 ACCCCAAATATCGTCAGTAAGTACAA 60.071 38.462 0.00 0.00 0.00 2.41
1935 3263 2.505557 GCAAAGCACGATGCCTGC 60.506 61.111 14.26 14.26 46.52 4.85
2038 3366 1.557099 TACAGGCAGGTGTACAGAGG 58.443 55.000 0.00 0.00 31.46 3.69
2116 3477 7.552330 TGTTCTGCTGCATTACAAGACATAATA 59.448 33.333 1.31 0.00 0.00 0.98
2117 3478 6.375174 TGTTCTGCTGCATTACAAGACATAAT 59.625 34.615 1.31 0.00 0.00 1.28
2118 3479 5.704978 TGTTCTGCTGCATTACAAGACATAA 59.295 36.000 1.31 0.00 0.00 1.90
2201 3562 5.968676 AAGGTACTCCAAGCATACCATAA 57.031 39.130 2.72 0.00 40.81 1.90
2204 3565 3.329520 ACAAAGGTACTCCAAGCATACCA 59.670 43.478 2.72 0.00 40.81 3.25
2331 3696 1.228657 GGGTGCAGAAACTCCACGTC 61.229 60.000 0.00 0.00 0.00 4.34
2332 3697 1.227853 GGGTGCAGAAACTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
2333 3698 2.317609 CGGGTGCAGAAACTCCACG 61.318 63.158 0.00 0.00 0.00 4.94
2334 3699 0.951040 CTCGGGTGCAGAAACTCCAC 60.951 60.000 0.00 0.00 0.00 4.02
2336 3701 2.035442 GCTCGGGTGCAGAAACTCC 61.035 63.158 0.00 0.00 0.00 3.85
2337 3702 1.004440 AGCTCGGGTGCAGAAACTC 60.004 57.895 0.00 0.00 34.99 3.01
2338 3703 1.004440 GAGCTCGGGTGCAGAAACT 60.004 57.895 0.00 0.00 34.99 2.66
2339 3704 0.674895 ATGAGCTCGGGTGCAGAAAC 60.675 55.000 9.64 0.00 34.99 2.78
2341 3706 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
2342 3707 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
2343 3708 0.390492 TCATATGAGCTCGGGTGCAG 59.610 55.000 9.64 0.00 34.99 4.41
2344 3709 0.390492 CTCATATGAGCTCGGGTGCA 59.610 55.000 19.47 0.00 35.13 4.57
2345 3710 3.207677 CTCATATGAGCTCGGGTGC 57.792 57.895 19.47 0.00 35.13 5.01
2354 3719 2.101415 TGTTCACCCGAGCTCATATGAG 59.899 50.000 25.64 25.64 44.75 2.90
2355 3720 2.101415 CTGTTCACCCGAGCTCATATGA 59.899 50.000 15.40 10.42 0.00 2.15
2356 3721 2.159043 ACTGTTCACCCGAGCTCATATG 60.159 50.000 15.40 8.10 0.00 1.78
2357 3722 2.111384 ACTGTTCACCCGAGCTCATAT 58.889 47.619 15.40 0.00 0.00 1.78
2358 3723 1.557099 ACTGTTCACCCGAGCTCATA 58.443 50.000 15.40 0.00 0.00 2.15
2359 3724 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
2360 3725 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
2361 3726 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
2362 3727 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
2363 3728 2.093783 CGATTTTACTGTTCACCCGAGC 59.906 50.000 0.00 0.00 0.00 5.03
2364 3729 3.581755 TCGATTTTACTGTTCACCCGAG 58.418 45.455 0.00 0.00 0.00 4.63
2365 3730 3.663995 TCGATTTTACTGTTCACCCGA 57.336 42.857 0.00 0.00 0.00 5.14
2366 3731 4.735662 TTTCGATTTTACTGTTCACCCG 57.264 40.909 0.00 0.00 0.00 5.28
2429 3794 8.655970 GCACTTAAAACTTTTGTCAATGTTTCT 58.344 29.630 13.86 9.23 38.61 2.52
2430 3795 8.655970 AGCACTTAAAACTTTTGTCAATGTTTC 58.344 29.630 13.86 5.09 38.61 2.78
2431 3796 8.546597 AGCACTTAAAACTTTTGTCAATGTTT 57.453 26.923 9.87 9.87 40.32 2.83
2432 3797 8.442384 CAAGCACTTAAAACTTTTGTCAATGTT 58.558 29.630 0.00 0.00 32.90 2.71
2433 3798 7.412891 GCAAGCACTTAAAACTTTTGTCAATGT 60.413 33.333 0.00 0.00 0.00 2.71
2434 3799 6.901357 GCAAGCACTTAAAACTTTTGTCAATG 59.099 34.615 0.00 0.00 0.00 2.82
2435 3800 6.593382 TGCAAGCACTTAAAACTTTTGTCAAT 59.407 30.769 0.00 0.00 0.00 2.57
2436 3801 5.928839 TGCAAGCACTTAAAACTTTTGTCAA 59.071 32.000 0.00 0.00 0.00 3.18
2437 3802 5.473931 TGCAAGCACTTAAAACTTTTGTCA 58.526 33.333 0.00 0.00 0.00 3.58
2438 3803 6.401955 TTGCAAGCACTTAAAACTTTTGTC 57.598 33.333 0.00 0.00 0.00 3.18
2439 3804 6.793492 TTTGCAAGCACTTAAAACTTTTGT 57.207 29.167 0.00 0.00 0.00 2.83
2440 3805 8.672214 ATTTTTGCAAGCACTTAAAACTTTTG 57.328 26.923 0.00 0.00 0.00 2.44
2441 3806 9.340695 GAATTTTTGCAAGCACTTAAAACTTTT 57.659 25.926 0.00 0.00 0.00 2.27
2442 3807 7.691877 CGAATTTTTGCAAGCACTTAAAACTTT 59.308 29.630 0.00 0.00 0.00 2.66
2443 3808 7.148490 ACGAATTTTTGCAAGCACTTAAAACTT 60.148 29.630 0.00 0.47 0.00 2.66
2444 3809 6.312672 ACGAATTTTTGCAAGCACTTAAAACT 59.687 30.769 0.00 0.00 0.00 2.66
2445 3810 6.474364 ACGAATTTTTGCAAGCACTTAAAAC 58.526 32.000 0.00 0.00 0.00 2.43
2446 3811 6.311445 TGACGAATTTTTGCAAGCACTTAAAA 59.689 30.769 0.00 0.00 0.00 1.52
2447 3812 5.807520 TGACGAATTTTTGCAAGCACTTAAA 59.192 32.000 0.00 0.00 0.00 1.52
2448 3813 5.344066 TGACGAATTTTTGCAAGCACTTAA 58.656 33.333 0.00 0.00 0.00 1.85
2449 3814 4.926244 TGACGAATTTTTGCAAGCACTTA 58.074 34.783 0.00 0.00 0.00 2.24
2450 3815 3.779759 TGACGAATTTTTGCAAGCACTT 58.220 36.364 0.00 0.00 0.00 3.16
2451 3816 3.435105 TGACGAATTTTTGCAAGCACT 57.565 38.095 0.00 0.00 0.00 4.40
2452 3817 3.735240 TCATGACGAATTTTTGCAAGCAC 59.265 39.130 0.00 0.00 0.00 4.40
2453 3818 3.974912 TCATGACGAATTTTTGCAAGCA 58.025 36.364 0.00 0.00 0.00 3.91
2454 3819 4.970472 TTCATGACGAATTTTTGCAAGC 57.030 36.364 0.00 0.00 0.00 4.01
2455 3820 7.005380 GTGATTTCATGACGAATTTTTGCAAG 58.995 34.615 0.00 0.00 32.32 4.01
2456 3821 6.478016 TGTGATTTCATGACGAATTTTTGCAA 59.522 30.769 0.00 0.00 32.32 4.08
2457 3822 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
2458 3823 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
2459 3824 9.519905 GAAATGTGATTTCATGACGAATTTTTG 57.480 29.630 0.00 0.00 46.05 2.44
2473 3838 5.447818 CCACGCCTTCTAGAAATGTGATTTC 60.448 44.000 23.01 0.00 46.90 2.17
2474 3839 4.396166 CCACGCCTTCTAGAAATGTGATTT 59.604 41.667 23.01 3.35 34.64 2.17
2475 3840 3.941483 CCACGCCTTCTAGAAATGTGATT 59.059 43.478 23.01 3.88 0.00 2.57
2476 3841 3.535561 CCACGCCTTCTAGAAATGTGAT 58.464 45.455 23.01 7.98 0.00 3.06
2477 3842 2.935238 GCCACGCCTTCTAGAAATGTGA 60.935 50.000 23.01 0.00 0.00 3.58
2478 3843 1.398390 GCCACGCCTTCTAGAAATGTG 59.602 52.381 17.92 17.92 0.00 3.21
2479 3844 1.003118 TGCCACGCCTTCTAGAAATGT 59.997 47.619 6.63 2.59 0.00 2.71
2480 3845 1.737838 TGCCACGCCTTCTAGAAATG 58.262 50.000 6.63 2.12 0.00 2.32
2481 3846 2.489938 TTGCCACGCCTTCTAGAAAT 57.510 45.000 6.63 0.00 0.00 2.17
2482 3847 2.264005 TTTGCCACGCCTTCTAGAAA 57.736 45.000 6.63 0.00 0.00 2.52
2483 3848 2.264005 TTTTGCCACGCCTTCTAGAA 57.736 45.000 4.81 4.81 0.00 2.10
2484 3849 2.264005 TTTTTGCCACGCCTTCTAGA 57.736 45.000 0.00 0.00 0.00 2.43
2504 3869 9.167311 AGTAGCATTTTCAGAGTATCGATTTTT 57.833 29.630 1.71 0.00 42.67 1.94
2505 3870 8.723942 AGTAGCATTTTCAGAGTATCGATTTT 57.276 30.769 1.71 0.00 42.67 1.82
2506 3871 8.723942 AAGTAGCATTTTCAGAGTATCGATTT 57.276 30.769 1.71 0.00 42.67 2.17
2507 3872 8.723942 AAAGTAGCATTTTCAGAGTATCGATT 57.276 30.769 1.71 0.00 42.67 3.34
2508 3873 7.981789 TGAAAGTAGCATTTTCAGAGTATCGAT 59.018 33.333 2.16 2.16 39.05 3.59
2509 3874 7.320399 TGAAAGTAGCATTTTCAGAGTATCGA 58.680 34.615 6.29 0.00 39.05 3.59
2510 3875 7.525688 TGAAAGTAGCATTTTCAGAGTATCG 57.474 36.000 6.29 0.00 39.05 2.92
2513 3878 8.076178 GCTTTTGAAAGTAGCATTTTCAGAGTA 58.924 33.333 5.47 0.00 43.22 2.59
2514 3879 6.920210 GCTTTTGAAAGTAGCATTTTCAGAGT 59.080 34.615 5.47 0.00 43.22 3.24
2515 3880 6.919662 TGCTTTTGAAAGTAGCATTTTCAGAG 59.080 34.615 0.45 11.39 43.22 3.35
2516 3881 6.804677 TGCTTTTGAAAGTAGCATTTTCAGA 58.195 32.000 0.45 4.38 43.22 3.27
2534 3899 4.628963 ATTCAGCCTCCAAAATGCTTTT 57.371 36.364 0.00 0.00 31.77 2.27
2535 3900 4.628963 AATTCAGCCTCCAAAATGCTTT 57.371 36.364 0.00 0.00 31.77 3.51
2536 3901 4.202388 ACAAATTCAGCCTCCAAAATGCTT 60.202 37.500 0.00 0.00 31.77 3.91
2537 3902 3.325716 ACAAATTCAGCCTCCAAAATGCT 59.674 39.130 0.00 0.00 35.25 3.79
2538 3903 3.667360 ACAAATTCAGCCTCCAAAATGC 58.333 40.909 0.00 0.00 0.00 3.56
2539 3904 6.622833 AAAACAAATTCAGCCTCCAAAATG 57.377 33.333 0.00 0.00 0.00 2.32
2575 3940 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
2576 3941 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
2577 3942 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
2578 3943 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
2579 3944 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
2580 3945 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
2581 3946 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
2582 3947 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
2583 3948 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
2584 3949 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
2585 3950 7.964604 TGCAAAAATTCATCATGAAATCACA 57.035 28.000 3.63 0.00 40.12 3.58
2586 3951 7.480542 GCTTGCAAAAATTCATCATGAAATCAC 59.519 33.333 3.63 0.00 40.12 3.06
2587 3952 7.173390 TGCTTGCAAAAATTCATCATGAAATCA 59.827 29.630 3.63 0.00 40.12 2.57
2588 3953 7.480542 GTGCTTGCAAAAATTCATCATGAAATC 59.519 33.333 3.63 0.00 40.12 2.17
2589 3954 7.174253 AGTGCTTGCAAAAATTCATCATGAAAT 59.826 29.630 3.63 0.00 40.12 2.17
2590 3955 6.483974 AGTGCTTGCAAAAATTCATCATGAAA 59.516 30.769 3.63 0.00 40.12 2.69
2591 3956 5.992829 AGTGCTTGCAAAAATTCATCATGAA 59.007 32.000 1.59 1.59 41.09 2.57
2592 3957 5.543714 AGTGCTTGCAAAAATTCATCATGA 58.456 33.333 0.00 0.00 0.00 3.07
2593 3958 5.856126 AGTGCTTGCAAAAATTCATCATG 57.144 34.783 0.00 0.00 0.00 3.07
2594 3959 7.380536 TCTAAGTGCTTGCAAAAATTCATCAT 58.619 30.769 0.00 0.00 0.00 2.45
2595 3960 6.747125 TCTAAGTGCTTGCAAAAATTCATCA 58.253 32.000 0.00 0.00 0.00 3.07
2596 3961 7.383300 AGTTCTAAGTGCTTGCAAAAATTCATC 59.617 33.333 0.00 0.00 0.00 2.92
2597 3962 7.212274 AGTTCTAAGTGCTTGCAAAAATTCAT 58.788 30.769 0.00 0.00 0.00 2.57
2598 3963 6.572519 AGTTCTAAGTGCTTGCAAAAATTCA 58.427 32.000 0.00 0.00 0.00 2.57
2599 3964 7.468922 AAGTTCTAAGTGCTTGCAAAAATTC 57.531 32.000 0.00 0.00 0.00 2.17
2600 3965 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
2601 3966 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
2602 3967 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
2603 3968 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
2604 3969 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
2605 3970 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
2606 3971 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
2607 3972 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
2608 3973 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
2609 3974 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
2610 3975 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
2611 3976 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
2612 3977 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
2613 3978 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
2614 3979 9.443283 CAGAGAAACATTGACAAAAGTTCTAAG 57.557 33.333 9.09 3.77 0.00 2.18
2615 3980 9.173021 TCAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
2616 3981 8.731275 TCAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
2617 3982 7.554118 TCTCAGAGAAACATTGACAAAAGTTCT 59.446 33.333 0.00 9.17 0.00 3.01
2618 3983 7.697691 TCTCAGAGAAACATTGACAAAAGTTC 58.302 34.615 0.00 5.33 0.00 3.01
2619 3984 7.630242 TCTCAGAGAAACATTGACAAAAGTT 57.370 32.000 0.00 0.00 0.00 2.66
2620 3985 7.630242 TTCTCAGAGAAACATTGACAAAAGT 57.370 32.000 10.68 0.00 29.99 2.66
2621 3986 9.525409 AAATTCTCAGAGAAACATTGACAAAAG 57.475 29.630 17.00 0.00 37.82 2.27
2622 3987 9.874205 AAAATTCTCAGAGAAACATTGACAAAA 57.126 25.926 17.00 0.00 37.82 2.44
2623 3988 9.874205 AAAAATTCTCAGAGAAACATTGACAAA 57.126 25.926 17.00 0.00 37.82 2.83
2680 4045 6.360844 TCGGTGAACAGTAAAATCGAAAAA 57.639 33.333 0.00 0.00 0.00 1.94
2681 4046 5.559417 GCTCGGTGAACAGTAAAATCGAAAA 60.559 40.000 0.00 0.00 0.00 2.29
2682 4047 4.084223 GCTCGGTGAACAGTAAAATCGAAA 60.084 41.667 0.00 0.00 0.00 3.46
2683 4048 3.430895 GCTCGGTGAACAGTAAAATCGAA 59.569 43.478 0.00 0.00 0.00 3.71
2684 4049 2.991190 GCTCGGTGAACAGTAAAATCGA 59.009 45.455 0.00 0.00 0.00 3.59
2685 4050 2.993899 AGCTCGGTGAACAGTAAAATCG 59.006 45.455 0.00 0.00 0.00 3.34
2686 4051 3.994392 TGAGCTCGGTGAACAGTAAAATC 59.006 43.478 9.64 0.00 0.00 2.17
2687 4052 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
2688 4053 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
2689 4054 3.462483 TTGAGCTCGGTGAACAGTAAA 57.538 42.857 9.64 0.00 0.00 2.01
2690 4055 3.462483 TTTGAGCTCGGTGAACAGTAA 57.538 42.857 9.64 0.00 0.00 2.24
2691 4056 3.006430 TCATTTGAGCTCGGTGAACAGTA 59.994 43.478 9.64 0.00 0.00 2.74
2692 4057 2.146342 CATTTGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
2693 4058 2.414481 CTCATTTGAGCTCGGTGAACAG 59.586 50.000 9.64 0.00 35.13 3.16
2694 4059 2.416747 CTCATTTGAGCTCGGTGAACA 58.583 47.619 9.64 0.00 35.13 3.18
2715 4080 1.743252 GTGCCTTTCTGCTCCCGAG 60.743 63.158 0.00 0.00 0.00 4.63
2716 4081 1.768684 AAGTGCCTTTCTGCTCCCGA 61.769 55.000 0.00 0.00 0.00 5.14
2717 4082 0.890996 AAAGTGCCTTTCTGCTCCCG 60.891 55.000 0.00 0.00 0.00 5.14
2718 4083 0.884514 GAAAGTGCCTTTCTGCTCCC 59.115 55.000 16.08 0.00 44.33 4.30
2719 4084 0.519077 CGAAAGTGCCTTTCTGCTCC 59.481 55.000 19.11 1.19 45.19 4.70
2720 4085 1.195674 GTCGAAAGTGCCTTTCTGCTC 59.804 52.381 19.11 8.24 45.19 4.26
2721 4086 1.230324 GTCGAAAGTGCCTTTCTGCT 58.770 50.000 19.11 0.00 45.19 4.24
2722 4087 0.238553 GGTCGAAAGTGCCTTTCTGC 59.761 55.000 19.11 13.46 45.19 4.26
2723 4088 1.532868 CTGGTCGAAAGTGCCTTTCTG 59.467 52.381 19.11 14.44 45.19 3.02
2724 4089 1.141053 ACTGGTCGAAAGTGCCTTTCT 59.859 47.619 19.11 3.80 45.19 2.52
2725 4090 1.594331 ACTGGTCGAAAGTGCCTTTC 58.406 50.000 14.28 14.28 44.29 2.62
2726 4091 1.947456 GAACTGGTCGAAAGTGCCTTT 59.053 47.619 2.95 0.46 36.29 3.11
2727 4092 1.134220 TGAACTGGTCGAAAGTGCCTT 60.134 47.619 2.95 0.00 0.00 4.35
2728 4093 0.468226 TGAACTGGTCGAAAGTGCCT 59.532 50.000 2.95 0.00 0.00 4.75
2729 4094 1.197721 CATGAACTGGTCGAAAGTGCC 59.802 52.381 2.95 0.00 0.00 5.01
2730 4095 1.400242 GCATGAACTGGTCGAAAGTGC 60.400 52.381 0.00 2.05 0.00 4.40
2731 4096 1.197721 GGCATGAACTGGTCGAAAGTG 59.802 52.381 0.00 0.00 0.00 3.16
2732 4097 1.202758 TGGCATGAACTGGTCGAAAGT 60.203 47.619 0.00 0.00 0.00 2.66
2733 4098 1.522668 TGGCATGAACTGGTCGAAAG 58.477 50.000 0.00 0.00 0.00 2.62
2734 4099 2.198827 ATGGCATGAACTGGTCGAAA 57.801 45.000 0.00 0.00 0.00 3.46
2735 4100 2.236146 AGTATGGCATGAACTGGTCGAA 59.764 45.455 10.98 0.00 0.00 3.71
2736 4101 1.831106 AGTATGGCATGAACTGGTCGA 59.169 47.619 10.98 0.00 0.00 4.20
2737 4102 2.315925 AGTATGGCATGAACTGGTCG 57.684 50.000 10.98 0.00 0.00 4.79
2738 4103 3.624861 CAGAAGTATGGCATGAACTGGTC 59.375 47.826 10.98 2.36 0.00 4.02
2739 4104 3.264193 TCAGAAGTATGGCATGAACTGGT 59.736 43.478 10.98 0.00 0.00 4.00
2740 4105 3.877559 TCAGAAGTATGGCATGAACTGG 58.122 45.455 10.98 1.03 0.00 4.00
2741 4106 6.094464 TGAATTCAGAAGTATGGCATGAACTG 59.906 38.462 10.98 13.43 33.09 3.16
2742 4107 6.182627 TGAATTCAGAAGTATGGCATGAACT 58.817 36.000 10.98 3.36 33.09 3.01
2743 4108 6.441093 TGAATTCAGAAGTATGGCATGAAC 57.559 37.500 10.98 0.57 33.09 3.18
2744 4109 6.660521 AGTTGAATTCAGAAGTATGGCATGAA 59.339 34.615 10.98 5.80 34.64 2.57
2745 4110 6.182627 AGTTGAATTCAGAAGTATGGCATGA 58.817 36.000 10.98 0.00 0.00 3.07
2746 4111 6.446781 AGTTGAATTCAGAAGTATGGCATG 57.553 37.500 10.98 0.00 0.00 4.06
2747 4112 7.039504 ACAAAGTTGAATTCAGAAGTATGGCAT 60.040 33.333 8.41 4.88 0.00 4.40
2748 4113 6.265196 ACAAAGTTGAATTCAGAAGTATGGCA 59.735 34.615 8.41 0.00 0.00 4.92
2749 4114 6.681777 ACAAAGTTGAATTCAGAAGTATGGC 58.318 36.000 8.41 0.00 0.00 4.40
2750 4115 9.994432 GATACAAAGTTGAATTCAGAAGTATGG 57.006 33.333 17.82 6.43 0.00 2.74
2753 4118 8.721478 GCTGATACAAAGTTGAATTCAGAAGTA 58.279 33.333 8.41 8.96 35.78 2.24
2754 4119 7.308830 GGCTGATACAAAGTTGAATTCAGAAGT 60.309 37.037 8.41 7.18 35.78 3.01
2755 4120 7.025963 GGCTGATACAAAGTTGAATTCAGAAG 58.974 38.462 8.41 1.63 35.78 2.85
2761 4126 7.759489 TGTTAGGCTGATACAAAGTTGAATT 57.241 32.000 0.00 0.00 0.00 2.17
2906 4271 4.274459 GTCAGTTCTGTTCAGCAAGTTGAT 59.726 41.667 7.16 0.00 0.00 2.57
3147 4512 4.731773 GCTTGAAGCAATACATAGTGTGGC 60.732 45.833 13.09 0.00 41.89 5.01
3400 4765 7.660208 ACTTTGTAGAAATAGAAACATGTCCGT 59.340 33.333 0.00 0.00 0.00 4.69
3522 4888 2.936919 ATGCTCACAACTGTCTCCAA 57.063 45.000 0.00 0.00 0.00 3.53
3597 4963 3.532542 AGGAGCGTAATAAAGGCAGAAC 58.467 45.455 0.00 0.00 41.54 3.01
3614 4980 2.813754 TGCGAAACCAAAGAATGAGGAG 59.186 45.455 0.00 0.00 0.00 3.69
3924 5291 1.967319 TTCTTCCAGCAGTGAACACC 58.033 50.000 0.00 0.00 0.00 4.16
3930 5297 8.398665 GGTTAATATAACTTTCTTCCAGCAGTG 58.601 37.037 0.80 0.00 0.00 3.66
4130 5498 8.542926 TCTATATGCATAGGTGACAGCATAAAT 58.457 33.333 12.79 0.00 44.82 1.40
4285 5653 4.202326 GGTGGACTTCTGTACTTTCTTCCA 60.202 45.833 0.00 0.00 0.00 3.53
4294 5662 0.677842 ACACCGGTGGACTTCTGTAC 59.322 55.000 36.47 0.00 34.19 2.90
4479 5847 4.524328 AGATCCAAGGCTTTAAACAACAGG 59.476 41.667 0.00 0.00 0.00 4.00
4507 5875 8.164153 GCTTCAAACAACATGCAAGTTTATATG 58.836 33.333 4.22 2.91 34.03 1.78
4516 5884 3.552684 GCTAGGCTTCAAACAACATGCAA 60.553 43.478 0.00 0.00 0.00 4.08
4597 5965 3.006133 TACCATGGCCCTCGCACA 61.006 61.111 13.04 0.00 36.38 4.57
4598 5966 2.203070 CTACCATGGCCCTCGCAC 60.203 66.667 13.04 0.00 36.38 5.34
4789 6169 5.151297 TGTTCTCATGCTCATACAAGTGA 57.849 39.130 0.00 0.00 0.00 3.41
4812 6193 2.027751 GCGCGTAGATGTCCCTCC 59.972 66.667 8.43 0.00 0.00 4.30
4891 6295 8.143193 AGTGCATGACAAAAATTTAGACATCAA 58.857 29.630 0.00 0.00 0.00 2.57
4892 6296 7.660112 AGTGCATGACAAAAATTTAGACATCA 58.340 30.769 0.00 0.00 0.00 3.07
4909 6313 2.574450 TCGTATACCCGTAGTGCATGA 58.426 47.619 0.00 0.00 0.00 3.07
5117 6521 4.241555 CCGATGGCGAGGGAAGGG 62.242 72.222 0.00 0.00 40.82 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.