Multiple sequence alignment - TraesCS6B01G294500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G294500 chr6B 100.000 3495 0 0 1 3495 528625551 528622057 0.000000e+00 6455
1 TraesCS6B01G294500 chr6B 96.135 207 8 0 1 207 613993382 613993588 4.320000e-89 339
2 TraesCS6B01G294500 chr6B 96.985 199 6 0 1 199 531259113 531259311 5.590000e-88 335
3 TraesCS6B01G294500 chr6B 96.985 199 6 0 1 199 539697523 539697325 5.590000e-88 335
4 TraesCS6B01G294500 chr6B 95.146 206 10 0 1 206 487826555 487826350 3.360000e-85 326
5 TraesCS6B01G294500 chr6B 96.842 95 3 0 194 288 262791873 262791967 3.610000e-35 159
6 TraesCS6B01G294500 chr6D 93.403 2486 106 23 280 2743 351109160 351111609 0.000000e+00 3629
7 TraesCS6B01G294500 chr6D 90.511 411 24 9 2790 3187 351112089 351112497 2.390000e-146 529
8 TraesCS6B01G294500 chr6D 88.485 330 36 2 281 608 351108209 351108538 7.030000e-107 398
9 TraesCS6B01G294500 chr6D 97.596 208 3 1 3290 3495 351112495 351112702 4.290000e-94 355
10 TraesCS6B01G294500 chr6A 92.953 2086 91 24 694 2743 492709404 492707339 0.000000e+00 2987
11 TraesCS6B01G294500 chr6A 92.973 370 13 5 2829 3187 492707185 492706818 8.590000e-146 527
12 TraesCS6B01G294500 chr6A 87.260 416 35 4 280 687 492712768 492712363 3.180000e-125 459
13 TraesCS6B01G294500 chr6A 97.596 208 3 2 3290 3495 492706820 492706613 4.290000e-94 355
14 TraesCS6B01G294500 chr6A 86.405 331 37 5 281 608 492713742 492713417 4.290000e-94 355
15 TraesCS6B01G294500 chr3B 95.169 207 10 0 1 207 525422751 525422957 9.350000e-86 327
16 TraesCS6B01G294500 chr3B 93.966 116 6 1 3181 3296 803868066 803868180 1.290000e-39 174
17 TraesCS6B01G294500 chr3B 98.864 88 1 0 194 281 430969326 430969239 1.300000e-34 158
18 TraesCS6B01G294500 chrUn 95.980 199 8 0 1 199 53270813 53271011 1.210000e-84 324
19 TraesCS6B01G294500 chr7B 94.686 207 11 0 1 207 523929492 523929286 4.350000e-84 322
20 TraesCS6B01G294500 chr4B 94.686 207 11 0 1 207 78647731 78647525 4.350000e-84 322
21 TraesCS6B01G294500 chr4B 94.686 207 11 0 1 207 623238679 623238885 4.350000e-84 322
22 TraesCS6B01G294500 chr2A 98.148 108 2 0 3185 3292 3757516 3757409 4.610000e-44 189
23 TraesCS6B01G294500 chr5A 98.131 107 2 0 3185 3291 706334497 706334603 1.660000e-43 187
24 TraesCS6B01G294500 chr5A 89.552 134 11 3 3178 3309 382564723 382564855 2.160000e-37 167
25 TraesCS6B01G294500 chr2B 96.396 111 4 0 3185 3295 793498697 793498807 2.140000e-42 183
26 TraesCS6B01G294500 chr2B 98.864 88 1 0 197 284 88384762 88384849 1.300000e-34 158
27 TraesCS6B01G294500 chr2B 97.826 92 1 1 194 285 245524782 245524692 1.300000e-34 158
28 TraesCS6B01G294500 chr2B 96.809 94 3 0 196 289 735978524 735978431 1.300000e-34 158
29 TraesCS6B01G294500 chr7D 95.455 110 5 0 3185 3294 262472165 262472274 3.590000e-40 176
30 TraesCS6B01G294500 chr1D 95.455 110 5 0 3185 3294 186442515 186442406 3.590000e-40 176
31 TraesCS6B01G294500 chr1D 95.455 110 5 0 3185 3294 419809745 419809636 3.590000e-40 176
32 TraesCS6B01G294500 chr1D 97.826 92 1 1 194 285 454144877 454144967 1.300000e-34 158
33 TraesCS6B01G294500 chr1B 93.333 120 6 2 3185 3302 438648049 438648168 3.590000e-40 176
34 TraesCS6B01G294500 chr1B 97.826 92 1 1 194 285 202227125 202227215 1.300000e-34 158
35 TraesCS6B01G294500 chr1B 98.864 88 1 0 196 283 314826096 314826009 1.300000e-34 158
36 TraesCS6B01G294500 chr1B 93.939 99 6 0 194 292 176202421 176202519 2.170000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G294500 chr6B 528622057 528625551 3494 True 6455.00 6455 100.00000 1 3495 1 chr6B.!!$R2 3494
1 TraesCS6B01G294500 chr6D 351108209 351112702 4493 False 1227.75 3629 92.49875 280 3495 4 chr6D.!!$F1 3215
2 TraesCS6B01G294500 chr6A 492706613 492713742 7129 True 936.60 2987 91.43740 280 3495 5 chr6A.!!$R1 3215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 501 0.031043 CGTTTGGTCGGGGAAAAACC 59.969 55.0 0.0 0.0 38.08 3.27 F
949 4905 0.315251 GCTCCCCTGCACAAGAAAAC 59.685 55.0 0.0 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 5687 0.536006 GAGCAGTTGGGCAAGACAGT 60.536 55.0 0.0 0.0 35.83 3.55 R
2880 7316 0.654683 GATGCACACAGCCGATTCTC 59.345 55.0 0.0 0.0 44.83 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.228567 GCTCCAGCGCCCTAGTCC 62.229 72.222 2.29 0.00 0.00 3.85
19 20 2.759973 CTCCAGCGCCCTAGTCCA 60.760 66.667 2.29 0.00 0.00 4.02
20 21 3.075005 TCCAGCGCCCTAGTCCAC 61.075 66.667 2.29 0.00 0.00 4.02
21 22 4.514577 CCAGCGCCCTAGTCCACG 62.515 72.222 2.29 0.00 0.00 4.94
25 26 3.771160 CGCCCTAGTCCACGCCTT 61.771 66.667 0.00 0.00 0.00 4.35
26 27 2.187163 GCCCTAGTCCACGCCTTC 59.813 66.667 0.00 0.00 0.00 3.46
27 28 2.359967 GCCCTAGTCCACGCCTTCT 61.360 63.158 0.00 0.00 0.00 2.85
28 29 1.817209 CCCTAGTCCACGCCTTCTC 59.183 63.158 0.00 0.00 0.00 2.87
29 30 1.677637 CCCTAGTCCACGCCTTCTCC 61.678 65.000 0.00 0.00 0.00 3.71
30 31 1.433879 CTAGTCCACGCCTTCTCCG 59.566 63.158 0.00 0.00 0.00 4.63
31 32 2.615262 CTAGTCCACGCCTTCTCCGC 62.615 65.000 0.00 0.00 0.00 5.54
32 33 4.373116 GTCCACGCCTTCTCCGCA 62.373 66.667 0.00 0.00 0.00 5.69
33 34 4.373116 TCCACGCCTTCTCCGCAC 62.373 66.667 0.00 0.00 0.00 5.34
34 35 4.680237 CCACGCCTTCTCCGCACA 62.680 66.667 0.00 0.00 0.00 4.57
35 36 3.114616 CACGCCTTCTCCGCACAG 61.115 66.667 0.00 0.00 0.00 3.66
38 39 4.704833 GCCTTCTCCGCACAGCCA 62.705 66.667 0.00 0.00 0.00 4.75
39 40 2.032528 CCTTCTCCGCACAGCCAA 59.967 61.111 0.00 0.00 0.00 4.52
40 41 1.600636 CCTTCTCCGCACAGCCAAA 60.601 57.895 0.00 0.00 0.00 3.28
41 42 1.576421 CTTCTCCGCACAGCCAAAC 59.424 57.895 0.00 0.00 0.00 2.93
42 43 1.153066 TTCTCCGCACAGCCAAACA 60.153 52.632 0.00 0.00 0.00 2.83
43 44 0.537143 TTCTCCGCACAGCCAAACAT 60.537 50.000 0.00 0.00 0.00 2.71
44 45 1.210931 CTCCGCACAGCCAAACATG 59.789 57.895 0.00 0.00 0.00 3.21
45 46 1.518056 CTCCGCACAGCCAAACATGT 61.518 55.000 0.00 0.00 0.00 3.21
46 47 1.081242 CCGCACAGCCAAACATGTC 60.081 57.895 0.00 0.00 0.00 3.06
47 48 1.081242 CGCACAGCCAAACATGTCC 60.081 57.895 0.00 0.00 0.00 4.02
48 49 1.794151 CGCACAGCCAAACATGTCCA 61.794 55.000 0.00 0.00 0.00 4.02
49 50 0.038892 GCACAGCCAAACATGTCCAG 60.039 55.000 0.00 0.00 0.00 3.86
50 51 1.608055 CACAGCCAAACATGTCCAGA 58.392 50.000 0.00 0.00 0.00 3.86
51 52 1.538512 CACAGCCAAACATGTCCAGAG 59.461 52.381 0.00 0.00 0.00 3.35
52 53 0.524862 CAGCCAAACATGTCCAGAGC 59.475 55.000 0.00 0.00 0.00 4.09
53 54 0.111061 AGCCAAACATGTCCAGAGCA 59.889 50.000 0.00 0.00 0.00 4.26
54 55 0.524862 GCCAAACATGTCCAGAGCAG 59.475 55.000 0.00 0.00 0.00 4.24
55 56 1.171308 CCAAACATGTCCAGAGCAGG 58.829 55.000 0.00 0.00 0.00 4.85
56 57 1.271543 CCAAACATGTCCAGAGCAGGA 60.272 52.381 0.00 0.00 34.64 3.86
57 58 2.082231 CAAACATGTCCAGAGCAGGAG 58.918 52.381 0.00 0.00 38.64 3.69
58 59 0.617413 AACATGTCCAGAGCAGGAGG 59.383 55.000 0.00 0.00 38.64 4.30
59 60 1.153208 CATGTCCAGAGCAGGAGGC 60.153 63.158 0.00 0.00 38.64 4.70
68 69 3.291611 GCAGGAGGCAAATGGGTG 58.708 61.111 0.00 0.00 43.97 4.61
69 70 2.353610 GCAGGAGGCAAATGGGTGG 61.354 63.158 0.00 0.00 43.97 4.61
70 71 2.037847 AGGAGGCAAATGGGTGGC 59.962 61.111 0.00 0.00 44.15 5.01
74 75 3.076916 GGCAAATGGGTGGCCTCC 61.077 66.667 15.90 15.90 44.32 4.30
75 76 2.283821 GCAAATGGGTGGCCTCCA 60.284 61.111 24.81 21.38 38.82 3.86
85 86 3.319198 GGCCTCCACCGTGAAGGA 61.319 66.667 8.21 0.00 45.00 3.36
91 92 3.059982 CACCGTGAAGGAGGAGCA 58.940 61.111 0.00 0.00 45.00 4.26
92 93 1.599047 CACCGTGAAGGAGGAGCAT 59.401 57.895 0.00 0.00 45.00 3.79
93 94 0.824109 CACCGTGAAGGAGGAGCATA 59.176 55.000 0.00 0.00 45.00 3.14
94 95 1.414181 CACCGTGAAGGAGGAGCATAT 59.586 52.381 0.00 0.00 45.00 1.78
95 96 2.119495 ACCGTGAAGGAGGAGCATATT 58.881 47.619 0.00 0.00 45.00 1.28
96 97 2.158900 ACCGTGAAGGAGGAGCATATTG 60.159 50.000 0.00 0.00 45.00 1.90
97 98 1.869767 CGTGAAGGAGGAGCATATTGC 59.130 52.381 0.00 0.00 45.46 3.56
123 124 4.929707 GGGCGGCCGGATACTTGG 62.930 72.222 29.38 0.00 0.00 3.61
128 129 4.849310 GCCGGATACTTGGCCGCA 62.849 66.667 5.05 0.00 45.73 5.69
129 130 2.588877 CCGGATACTTGGCCGCAG 60.589 66.667 0.00 0.00 45.93 5.18
130 131 2.499205 CGGATACTTGGCCGCAGA 59.501 61.111 8.75 0.00 41.17 4.26
131 132 1.883084 CGGATACTTGGCCGCAGAC 60.883 63.158 8.75 0.58 41.17 3.51
132 133 1.220749 GGATACTTGGCCGCAGACA 59.779 57.895 8.75 0.00 0.00 3.41
133 134 0.179045 GGATACTTGGCCGCAGACAT 60.179 55.000 8.75 1.79 0.00 3.06
134 135 1.221414 GATACTTGGCCGCAGACATC 58.779 55.000 8.75 6.96 0.00 3.06
135 136 0.530650 ATACTTGGCCGCAGACATCG 60.531 55.000 8.75 0.00 0.00 3.84
136 137 3.869272 CTTGGCCGCAGACATCGC 61.869 66.667 0.00 0.00 0.00 4.58
146 147 4.865761 GACATCGCGCACCGGCTA 62.866 66.667 8.75 0.00 38.10 3.93
161 162 4.514577 CTACCGGACGCAGGGCAG 62.515 72.222 9.46 0.00 0.00 4.85
164 165 4.899239 CCGGACGCAGGGCAGATC 62.899 72.222 0.00 0.00 0.00 2.75
165 166 4.147449 CGGACGCAGGGCAGATCA 62.147 66.667 0.00 0.00 0.00 2.92
166 167 2.507944 GGACGCAGGGCAGATCAT 59.492 61.111 0.00 0.00 0.00 2.45
167 168 1.153086 GGACGCAGGGCAGATCATT 60.153 57.895 0.00 0.00 0.00 2.57
168 169 1.162800 GGACGCAGGGCAGATCATTC 61.163 60.000 0.00 0.00 0.00 2.67
169 170 1.153086 ACGCAGGGCAGATCATTCC 60.153 57.895 0.00 0.00 0.00 3.01
170 171 1.153107 CGCAGGGCAGATCATTCCA 60.153 57.895 0.00 0.00 0.00 3.53
171 172 0.749091 CGCAGGGCAGATCATTCCAA 60.749 55.000 0.00 0.00 0.00 3.53
172 173 0.743097 GCAGGGCAGATCATTCCAAC 59.257 55.000 0.00 0.00 0.00 3.77
173 174 1.684248 GCAGGGCAGATCATTCCAACT 60.684 52.381 0.00 0.00 0.00 3.16
174 175 2.295885 CAGGGCAGATCATTCCAACTC 58.704 52.381 0.00 0.00 0.00 3.01
175 176 1.213926 AGGGCAGATCATTCCAACTCC 59.786 52.381 0.00 0.00 0.00 3.85
176 177 1.303309 GGCAGATCATTCCAACTCCG 58.697 55.000 0.00 0.00 0.00 4.63
177 178 1.303309 GCAGATCATTCCAACTCCGG 58.697 55.000 0.00 0.00 0.00 5.14
178 179 1.959042 CAGATCATTCCAACTCCGGG 58.041 55.000 0.00 0.00 0.00 5.73
179 180 1.486310 CAGATCATTCCAACTCCGGGA 59.514 52.381 0.00 0.00 0.00 5.14
180 181 1.486726 AGATCATTCCAACTCCGGGAC 59.513 52.381 0.00 0.00 33.18 4.46
181 182 0.546598 ATCATTCCAACTCCGGGACC 59.453 55.000 0.00 0.00 33.18 4.46
182 183 1.077716 CATTCCAACTCCGGGACCC 60.078 63.158 0.00 0.00 33.18 4.46
183 184 2.306384 ATTCCAACTCCGGGACCCC 61.306 63.158 4.46 0.00 33.18 4.95
184 185 3.795977 TTCCAACTCCGGGACCCCA 62.796 63.158 4.46 0.00 33.18 4.96
185 186 4.029809 CCAACTCCGGGACCCCAC 62.030 72.222 4.46 0.00 35.37 4.61
186 187 4.388499 CAACTCCGGGACCCCACG 62.388 72.222 4.46 0.00 35.37 4.94
187 188 4.626402 AACTCCGGGACCCCACGA 62.626 66.667 4.46 0.00 35.37 4.35
189 190 4.753662 CTCCGGGACCCCACGAGA 62.754 72.222 4.46 0.00 35.37 4.04
190 191 4.753662 TCCGGGACCCCACGAGAG 62.754 72.222 4.46 0.00 35.37 3.20
207 208 3.637273 GGGTCGTGTCCCTTGCCT 61.637 66.667 5.99 0.00 43.85 4.75
208 209 2.047179 GGTCGTGTCCCTTGCCTC 60.047 66.667 0.00 0.00 0.00 4.70
209 210 2.047179 GTCGTGTCCCTTGCCTCC 60.047 66.667 0.00 0.00 0.00 4.30
210 211 2.203788 TCGTGTCCCTTGCCTCCT 60.204 61.111 0.00 0.00 0.00 3.69
211 212 2.046892 CGTGTCCCTTGCCTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
212 213 2.360475 GTGTCCCTTGCCTCCTGC 60.360 66.667 0.00 0.00 41.77 4.85
213 214 2.530151 TGTCCCTTGCCTCCTGCT 60.530 61.111 0.00 0.00 42.00 4.24
214 215 1.229496 TGTCCCTTGCCTCCTGCTA 60.229 57.895 0.00 0.00 42.00 3.49
215 216 1.222113 GTCCCTTGCCTCCTGCTAC 59.778 63.158 0.00 0.00 42.00 3.58
216 217 1.995626 TCCCTTGCCTCCTGCTACC 60.996 63.158 0.00 0.00 42.00 3.18
217 218 2.300967 CCCTTGCCTCCTGCTACCA 61.301 63.158 0.00 0.00 42.00 3.25
218 219 1.639635 CCCTTGCCTCCTGCTACCAT 61.640 60.000 0.00 0.00 42.00 3.55
219 220 0.257039 CCTTGCCTCCTGCTACCATT 59.743 55.000 0.00 0.00 42.00 3.16
220 221 1.490490 CCTTGCCTCCTGCTACCATTA 59.510 52.381 0.00 0.00 42.00 1.90
221 222 2.486191 CCTTGCCTCCTGCTACCATTAG 60.486 54.545 0.00 0.00 42.00 1.73
231 232 2.405172 GCTACCATTAGCCTTAGACGC 58.595 52.381 0.00 0.00 44.55 5.19
232 233 2.223971 GCTACCATTAGCCTTAGACGCA 60.224 50.000 0.00 0.00 44.55 5.24
233 234 2.311124 ACCATTAGCCTTAGACGCAC 57.689 50.000 0.00 0.00 0.00 5.34
234 235 1.553248 ACCATTAGCCTTAGACGCACA 59.447 47.619 0.00 0.00 0.00 4.57
235 236 2.205074 CCATTAGCCTTAGACGCACAG 58.795 52.381 0.00 0.00 0.00 3.66
236 237 2.159099 CCATTAGCCTTAGACGCACAGA 60.159 50.000 0.00 0.00 0.00 3.41
237 238 3.493350 CCATTAGCCTTAGACGCACAGAT 60.493 47.826 0.00 0.00 0.00 2.90
238 239 3.438297 TTAGCCTTAGACGCACAGATC 57.562 47.619 0.00 0.00 0.00 2.75
239 240 0.101399 AGCCTTAGACGCACAGATCG 59.899 55.000 0.00 0.00 0.00 3.69
240 241 0.872021 GCCTTAGACGCACAGATCGG 60.872 60.000 0.00 0.00 0.00 4.18
241 242 0.249073 CCTTAGACGCACAGATCGGG 60.249 60.000 0.00 0.00 0.00 5.14
242 243 0.738975 CTTAGACGCACAGATCGGGA 59.261 55.000 0.00 0.00 0.00 5.14
243 244 0.454600 TTAGACGCACAGATCGGGAC 59.545 55.000 0.00 0.00 0.00 4.46
244 245 1.381928 TAGACGCACAGATCGGGACC 61.382 60.000 0.00 0.00 0.00 4.46
245 246 3.718210 GACGCACAGATCGGGACCC 62.718 68.421 0.00 0.00 0.00 4.46
246 247 4.530857 CGCACAGATCGGGACCCC 62.531 72.222 4.46 0.00 0.00 4.95
247 248 4.176752 GCACAGATCGGGACCCCC 62.177 72.222 4.46 0.00 41.09 5.40
248 249 2.365635 CACAGATCGGGACCCCCT 60.366 66.667 4.46 0.00 42.67 4.79
249 250 1.075525 CACAGATCGGGACCCCCTA 60.076 63.158 4.46 0.00 42.67 3.53
250 251 1.075450 ACAGATCGGGACCCCCTAC 60.075 63.158 4.46 0.00 42.67 3.18
251 252 1.837499 CAGATCGGGACCCCCTACC 60.837 68.421 4.46 0.00 42.67 3.18
252 253 2.526126 GATCGGGACCCCCTACCC 60.526 72.222 4.46 0.00 42.67 3.69
256 257 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
257 258 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
258 259 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
259 260 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
260 261 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
261 262 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
262 263 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
263 264 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
264 265 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
265 266 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
267 268 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
268 269 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
269 270 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
270 271 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
271 272 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
272 273 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
273 274 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
274 275 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
281 282 2.702847 GGTTTTGACACCGACAGCT 58.297 52.632 0.00 0.00 0.00 4.24
282 283 0.307760 GGTTTTGACACCGACAGCTG 59.692 55.000 13.48 13.48 0.00 4.24
283 284 0.307760 GTTTTGACACCGACAGCTGG 59.692 55.000 19.93 2.24 0.00 4.85
284 285 0.817634 TTTTGACACCGACAGCTGGG 60.818 55.000 19.93 13.15 0.00 4.45
285 286 1.691195 TTTGACACCGACAGCTGGGA 61.691 55.000 19.93 0.00 0.00 4.37
298 299 1.607178 CTGGGAAGGCCACAATGCA 60.607 57.895 5.01 0.00 35.15 3.96
300 301 1.186917 TGGGAAGGCCACAATGCAAG 61.187 55.000 5.01 0.00 35.15 4.01
337 340 1.381165 GGATGGCGGCGTTAATGGTT 61.381 55.000 9.37 0.00 0.00 3.67
376 379 1.688772 CGATCCGAGTAAGGAGGGAA 58.311 55.000 0.00 0.00 44.55 3.97
378 381 2.223758 CGATCCGAGTAAGGAGGGAAAC 60.224 54.545 0.00 0.00 44.55 2.78
385 388 2.042706 AGTAAGGAGGGAAACGAGAGGA 59.957 50.000 0.00 0.00 0.00 3.71
389 392 1.229209 AGGGAAACGAGAGGAGGCA 60.229 57.895 0.00 0.00 0.00 4.75
396 399 3.151022 GAGAGGAGGCAGGGGTCG 61.151 72.222 0.00 0.00 0.00 4.79
419 422 0.302288 CGTGCGTTTGTTTCCTTCGA 59.698 50.000 0.00 0.00 0.00 3.71
450 453 2.031258 TCGTTGGTTCTTCTGTTGCA 57.969 45.000 0.00 0.00 0.00 4.08
458 461 3.181487 GGTTCTTCTGTTGCATTGTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
464 467 2.853594 CTGTTGCATTGTGTGTGTTGTC 59.146 45.455 0.00 0.00 0.00 3.18
471 474 3.865011 TTGTGTGTGTTGTCTGCAATT 57.135 38.095 0.00 0.00 36.92 2.32
487 490 2.719046 GCAATTCAGTTTCGTTTGGTCG 59.281 45.455 0.00 0.00 0.00 4.79
495 499 1.760192 TTCGTTTGGTCGGGGAAAAA 58.240 45.000 0.00 0.00 0.00 1.94
497 501 0.031043 CGTTTGGTCGGGGAAAAACC 59.969 55.000 0.00 0.00 38.08 3.27
505 509 2.540963 GGGGAAAAACCGGGGAGGA 61.541 63.158 6.32 0.00 45.00 3.71
509 513 2.138453 GAAAAACCGGGGAGGAGGCT 62.138 60.000 6.32 0.00 45.00 4.58
510 514 0.843343 AAAAACCGGGGAGGAGGCTA 60.843 55.000 6.32 0.00 45.00 3.93
512 516 0.623617 AAACCGGGGAGGAGGCTAAT 60.624 55.000 6.32 0.00 45.00 1.73
544 548 3.833645 CGATGGGCGGACGAAGGA 61.834 66.667 0.00 0.00 36.03 3.36
561 565 1.450312 GAGAGGGCGGAACATGGTG 60.450 63.158 0.00 0.00 0.00 4.17
639 1630 8.339714 CAAAGTTAAAACACTTATTCTGGACGA 58.660 33.333 0.00 0.00 35.87 4.20
645 1636 3.055094 ACACTTATTCTGGACGAAGGCAT 60.055 43.478 0.00 0.00 34.56 4.40
907 4863 2.482142 GGAGATAAAGCCACTCCGACAG 60.482 54.545 0.00 0.00 40.28 3.51
949 4905 0.315251 GCTCCCCTGCACAAGAAAAC 59.685 55.000 0.00 0.00 0.00 2.43
1104 5060 6.041409 CCTGCTTTCTTGTCTCCTATCTATCA 59.959 42.308 0.00 0.00 0.00 2.15
1165 5121 0.337773 TGCCCAGAGGAGAGATCTGT 59.662 55.000 0.00 0.00 42.18 3.41
1209 5165 3.302699 GCTACGTTGTTTTAGCTCTACGG 59.697 47.826 10.73 0.00 38.16 4.02
1224 5180 1.350019 CTACGGGGTCCTGGAAGTTTT 59.650 52.381 0.00 0.00 0.00 2.43
1251 5207 7.930325 AGATTTGAGCTATTTCGATTGATCTCA 59.070 33.333 0.00 0.00 0.00 3.27
1387 5343 5.583495 TGATTTTGTTTGGTACGGTTCAAG 58.417 37.500 0.00 0.00 0.00 3.02
1388 5344 5.357314 TGATTTTGTTTGGTACGGTTCAAGA 59.643 36.000 0.00 0.00 0.00 3.02
1389 5345 5.640189 TTTTGTTTGGTACGGTTCAAGAA 57.360 34.783 0.00 0.00 0.00 2.52
1402 5358 6.334202 ACGGTTCAAGAATCAAGATAGAGTC 58.666 40.000 0.00 0.00 33.09 3.36
1441 5401 2.792542 GCTGCGCTTGTTTACATGGATC 60.793 50.000 9.73 0.00 0.00 3.36
1550 5510 8.219769 CGAGAACATCATAGCATAACATTCTTC 58.780 37.037 0.00 0.00 0.00 2.87
1551 5511 8.969260 AGAACATCATAGCATAACATTCTTCA 57.031 30.769 0.00 0.00 0.00 3.02
1714 5687 4.689612 AAGAGCAGTTGTTACCTCTTGA 57.310 40.909 0.00 0.00 41.62 3.02
1839 5812 2.045926 GCGCCCAACATGGAGACT 60.046 61.111 0.00 0.00 40.96 3.24
1878 5851 0.252012 CCGATCCTGGAGATAGCCCT 60.252 60.000 1.52 0.00 34.42 5.19
2002 5975 3.635433 CATGTAAGCCATGCTGTGC 57.365 52.632 0.00 0.00 44.21 4.57
2019 5992 4.084223 GCTGTGCCTTGTTTTTGAATGATG 60.084 41.667 0.00 0.00 0.00 3.07
2133 6106 3.187227 AGCGAACTTGTGTAGCAGAAATG 59.813 43.478 0.00 0.00 34.09 2.32
2143 6116 1.432251 GCAGAAATGCAGCTGCGAT 59.568 52.632 32.11 22.86 46.66 4.58
2147 6120 0.448990 GAAATGCAGCTGCGATGACA 59.551 50.000 32.11 15.38 45.83 3.58
2236 6209 3.577805 AGTACAAGCATATTGGTCCCC 57.422 47.619 0.00 0.00 0.00 4.81
2252 6225 1.829222 TCCCCTTACTGGCTTTACTCG 59.171 52.381 0.00 0.00 0.00 4.18
2272 6249 3.055458 TCGTTGATTGTTGCTAGGATGGA 60.055 43.478 0.00 0.00 0.00 3.41
2344 6321 2.264794 CCGGTCGTGAAGGAAGGG 59.735 66.667 0.00 0.00 0.00 3.95
2482 6459 4.385405 GTGCCTGAGAGCCAGCGT 62.385 66.667 0.00 0.00 41.57 5.07
2539 6516 7.781056 TGTATCTGTACATTGCTGTATCTTCA 58.219 34.615 0.00 0.00 39.93 3.02
2595 6575 4.214758 GTGTTAAACTCCGGTTGCAACTAT 59.785 41.667 27.64 7.54 35.63 2.12
2596 6576 5.409214 GTGTTAAACTCCGGTTGCAACTATA 59.591 40.000 27.64 12.75 35.63 1.31
2616 6596 1.219646 GCAACATGCTTTTGTGTGGG 58.780 50.000 0.00 0.00 40.96 4.61
2669 6652 4.739046 ACGAGTGAAAAGAAATCTGCAG 57.261 40.909 7.63 7.63 0.00 4.41
2670 6653 3.499918 ACGAGTGAAAAGAAATCTGCAGG 59.500 43.478 15.13 0.00 0.00 4.85
2693 6676 5.116983 GGTGCATCGTCAAATTTACTTGTTG 59.883 40.000 0.00 0.00 0.00 3.33
2698 6681 7.538678 GCATCGTCAAATTTACTTGTTGAAGAT 59.461 33.333 7.83 7.83 45.30 2.40
2711 6694 4.630111 TGTTGAAGATGAAATTGGGTTGC 58.370 39.130 0.00 0.00 0.00 4.17
2712 6695 3.959535 TGAAGATGAAATTGGGTTGCC 57.040 42.857 0.00 0.00 0.00 4.52
2776 7202 7.198306 ACTAATTTAGTTCTCCGTTGTTTGG 57.802 36.000 3.16 0.00 34.86 3.28
2777 7203 6.993902 ACTAATTTAGTTCTCCGTTGTTTGGA 59.006 34.615 3.16 0.00 34.86 3.53
2778 7204 5.684550 ATTTAGTTCTCCGTTGTTTGGAC 57.315 39.130 0.00 0.00 0.00 4.02
2779 7205 2.702592 AGTTCTCCGTTGTTTGGACA 57.297 45.000 0.00 0.00 0.00 4.02
2783 7209 5.127491 AGTTCTCCGTTGTTTGGACATTAA 58.873 37.500 0.00 0.00 35.29 1.40
2784 7210 5.768164 AGTTCTCCGTTGTTTGGACATTAAT 59.232 36.000 0.00 0.00 35.29 1.40
2785 7211 6.264518 AGTTCTCCGTTGTTTGGACATTAATT 59.735 34.615 0.00 0.00 35.29 1.40
2786 7212 6.642707 TCTCCGTTGTTTGGACATTAATTT 57.357 33.333 0.00 0.00 35.29 1.82
2787 7213 7.045126 TCTCCGTTGTTTGGACATTAATTTT 57.955 32.000 0.00 0.00 35.29 1.82
2788 7214 7.493367 TCTCCGTTGTTTGGACATTAATTTTT 58.507 30.769 0.00 0.00 35.29 1.94
2806 7237 6.651755 ATTTTTGAAGAATATGCTTTGCGG 57.348 33.333 0.00 0.00 0.00 5.69
2817 7248 1.202245 TGCTTTGCGGAACACAGAAAC 60.202 47.619 0.00 0.00 0.00 2.78
2824 7255 3.244422 TGCGGAACACAGAAACCTTCTAT 60.244 43.478 0.00 0.00 38.11 1.98
2825 7256 4.020928 TGCGGAACACAGAAACCTTCTATA 60.021 41.667 0.00 0.00 38.11 1.31
2837 7271 5.986004 AACCTTCTATAAACGCTGCATAC 57.014 39.130 0.00 0.00 0.00 2.39
2860 7296 7.023197 ACAATACGATGTTACTAAAATGCCC 57.977 36.000 0.00 0.00 0.00 5.36
2880 7316 4.729868 CCCTATGATGTTTAAAGGAGGGG 58.270 47.826 0.00 0.00 39.03 4.79
2881 7317 4.415512 CCCTATGATGTTTAAAGGAGGGGA 59.584 45.833 0.00 0.00 39.03 4.81
2882 7318 5.456763 CCCTATGATGTTTAAAGGAGGGGAG 60.457 48.000 0.00 0.00 39.03 4.30
2883 7319 5.369699 CCTATGATGTTTAAAGGAGGGGAGA 59.630 44.000 0.00 0.00 0.00 3.71
2917 7361 1.215912 CGCCATGATGCAAAAGCCA 59.784 52.632 0.00 0.00 0.00 4.75
2925 7369 2.756760 TGATGCAAAAGCCAGGATCTTC 59.243 45.455 0.00 0.00 34.21 2.87
2934 7378 0.179000 CCAGGATCTTCCCCTTCACG 59.821 60.000 0.00 0.00 37.19 4.35
2938 7382 2.642807 AGGATCTTCCCCTTCACGAAAA 59.357 45.455 0.00 0.00 37.19 2.29
2982 7426 4.651778 TGCTGATACAAATATGCCCCTAC 58.348 43.478 0.00 0.00 0.00 3.18
3184 7629 3.252944 TGCATCATGTTCACGTTGTTGAT 59.747 39.130 0.00 0.00 0.00 2.57
3185 7630 4.453819 TGCATCATGTTCACGTTGTTGATA 59.546 37.500 0.00 0.00 0.00 2.15
3186 7631 4.788100 GCATCATGTTCACGTTGTTGATAC 59.212 41.667 0.00 0.00 0.00 2.24
3187 7632 5.390885 GCATCATGTTCACGTTGTTGATACT 60.391 40.000 0.00 0.00 0.00 2.12
3188 7633 5.839262 TCATGTTCACGTTGTTGATACTC 57.161 39.130 0.00 0.00 0.00 2.59
3189 7634 4.688879 TCATGTTCACGTTGTTGATACTCC 59.311 41.667 0.00 0.00 0.00 3.85
3190 7635 3.395639 TGTTCACGTTGTTGATACTCCC 58.604 45.455 0.00 0.00 0.00 4.30
3191 7636 3.070446 TGTTCACGTTGTTGATACTCCCT 59.930 43.478 0.00 0.00 0.00 4.20
3192 7637 3.587797 TCACGTTGTTGATACTCCCTC 57.412 47.619 0.00 0.00 0.00 4.30
3193 7638 2.232941 TCACGTTGTTGATACTCCCTCC 59.767 50.000 0.00 0.00 0.00 4.30
3194 7639 2.028476 CACGTTGTTGATACTCCCTCCA 60.028 50.000 0.00 0.00 0.00 3.86
3195 7640 2.838202 ACGTTGTTGATACTCCCTCCAT 59.162 45.455 0.00 0.00 0.00 3.41
3196 7641 3.263425 ACGTTGTTGATACTCCCTCCATT 59.737 43.478 0.00 0.00 0.00 3.16
3197 7642 3.871594 CGTTGTTGATACTCCCTCCATTC 59.128 47.826 0.00 0.00 0.00 2.67
3198 7643 3.819564 TGTTGATACTCCCTCCATTCG 57.180 47.619 0.00 0.00 0.00 3.34
3199 7644 2.434336 TGTTGATACTCCCTCCATTCGG 59.566 50.000 0.00 0.00 0.00 4.30
3200 7645 2.698797 GTTGATACTCCCTCCATTCGGA 59.301 50.000 0.00 0.00 39.79 4.55
3201 7646 3.040655 TGATACTCCCTCCATTCGGAA 57.959 47.619 0.00 0.00 42.21 4.30
3202 7647 3.587498 TGATACTCCCTCCATTCGGAAT 58.413 45.455 0.00 0.00 42.21 3.01
3203 7648 3.973973 TGATACTCCCTCCATTCGGAATT 59.026 43.478 0.00 0.00 42.21 2.17
3204 7649 5.152193 TGATACTCCCTCCATTCGGAATTA 58.848 41.667 0.00 0.00 42.21 1.40
3205 7650 5.246203 TGATACTCCCTCCATTCGGAATTAG 59.754 44.000 0.00 2.04 42.21 1.73
3206 7651 3.385115 ACTCCCTCCATTCGGAATTAGT 58.615 45.455 0.00 0.00 42.21 2.24
3207 7652 3.780850 ACTCCCTCCATTCGGAATTAGTT 59.219 43.478 0.00 0.00 42.21 2.24
3208 7653 4.130118 CTCCCTCCATTCGGAATTAGTTG 58.870 47.826 0.00 0.00 42.21 3.16
3209 7654 3.521937 TCCCTCCATTCGGAATTAGTTGT 59.478 43.478 0.00 0.00 42.21 3.32
3210 7655 3.877508 CCCTCCATTCGGAATTAGTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
3211 7656 3.555956 CCTCCATTCGGAATTAGTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
3212 7657 2.933906 TCCATTCGGAATTAGTTGTCGC 59.066 45.455 0.00 0.00 38.83 5.19
3213 7658 2.675844 CCATTCGGAATTAGTTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
3214 7659 3.242413 CCATTCGGAATTAGTTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
3215 7660 3.306917 TTCGGAATTAGTTGTCGCAGA 57.693 42.857 0.00 0.00 0.00 4.26
3216 7661 3.306917 TCGGAATTAGTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3217 7662 3.655486 TCGGAATTAGTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3218 7663 4.250464 TCGGAATTAGTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3219 7664 4.092821 TCGGAATTAGTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3220 7665 4.092821 CGGAATTAGTTGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
3221 7666 5.390461 CGGAATTAGTTGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
3222 7667 6.555315 GGAATTAGTTGTCGCAGAAATGAAT 58.445 36.000 0.00 0.00 39.69 2.57
3223 7668 6.470235 GGAATTAGTTGTCGCAGAAATGAATG 59.530 38.462 0.00 0.00 39.69 2.67
3224 7669 5.940192 TTAGTTGTCGCAGAAATGAATGT 57.060 34.783 0.00 0.00 39.69 2.71
3225 7670 7.609760 ATTAGTTGTCGCAGAAATGAATGTA 57.390 32.000 0.00 0.00 39.69 2.29
3226 7671 7.609760 TTAGTTGTCGCAGAAATGAATGTAT 57.390 32.000 0.00 0.00 39.69 2.29
3227 7672 6.111768 AGTTGTCGCAGAAATGAATGTATC 57.888 37.500 0.00 0.00 39.69 2.24
3228 7673 5.877012 AGTTGTCGCAGAAATGAATGTATCT 59.123 36.000 0.00 0.00 39.69 1.98
3229 7674 7.041721 AGTTGTCGCAGAAATGAATGTATCTA 58.958 34.615 0.00 0.00 39.69 1.98
3230 7675 7.223582 AGTTGTCGCAGAAATGAATGTATCTAG 59.776 37.037 0.00 0.00 39.69 2.43
3231 7676 6.805713 TGTCGCAGAAATGAATGTATCTAGA 58.194 36.000 0.00 0.00 39.69 2.43
3232 7677 7.436933 TGTCGCAGAAATGAATGTATCTAGAT 58.563 34.615 10.73 10.73 39.69 1.98
3233 7678 7.383300 TGTCGCAGAAATGAATGTATCTAGATG 59.617 37.037 15.79 0.00 39.69 2.90
3234 7679 7.383572 GTCGCAGAAATGAATGTATCTAGATGT 59.616 37.037 15.79 0.00 39.69 3.06
3235 7680 8.576442 TCGCAGAAATGAATGTATCTAGATGTA 58.424 33.333 15.79 4.44 0.00 2.29
3236 7681 9.363763 CGCAGAAATGAATGTATCTAGATGTAT 57.636 33.333 15.79 6.61 0.00 2.29
3266 7711 9.606631 AGTTCTAAATACATCCATTTCTGAGAC 57.393 33.333 0.00 0.00 30.84 3.36
3267 7712 9.383519 GTTCTAAATACATCCATTTCTGAGACA 57.616 33.333 0.00 0.00 30.84 3.41
3268 7713 9.958180 TTCTAAATACATCCATTTCTGAGACAA 57.042 29.630 0.00 0.00 30.84 3.18
3269 7714 9.605275 TCTAAATACATCCATTTCTGAGACAAG 57.395 33.333 0.00 0.00 30.84 3.16
3270 7715 9.388506 CTAAATACATCCATTTCTGAGACAAGT 57.611 33.333 0.00 0.00 30.84 3.16
3272 7717 9.739276 AAATACATCCATTTCTGAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
3273 7718 9.911788 AATACATCCATTTCTGAGACAAGTAAT 57.088 29.630 0.00 0.00 0.00 1.89
3274 7719 9.911788 ATACATCCATTTCTGAGACAAGTAATT 57.088 29.630 0.00 0.00 0.00 1.40
3275 7720 8.273780 ACATCCATTTCTGAGACAAGTAATTC 57.726 34.615 0.00 0.00 0.00 2.17
3276 7721 7.884877 ACATCCATTTCTGAGACAAGTAATTCA 59.115 33.333 0.00 0.00 0.00 2.57
3277 7722 7.912056 TCCATTTCTGAGACAAGTAATTCAG 57.088 36.000 0.00 0.00 38.67 3.02
3278 7723 7.679783 TCCATTTCTGAGACAAGTAATTCAGA 58.320 34.615 0.00 0.00 43.00 3.27
3282 7727 5.470368 TCTGAGACAAGTAATTCAGAACGG 58.530 41.667 0.89 0.00 42.08 4.44
3283 7728 5.243060 TCTGAGACAAGTAATTCAGAACGGA 59.757 40.000 0.89 0.00 42.08 4.69
3284 7729 5.470368 TGAGACAAGTAATTCAGAACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
3285 7730 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
3286 7731 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3287 7732 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3288 7733 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3316 7761 3.063743 GCCTCCAAAATTCCGCCCG 62.064 63.158 0.00 0.00 0.00 6.13
3448 7896 1.869767 GGCATGACCAGCTATCTTTCG 59.130 52.381 0.00 0.00 38.86 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.151022 GACTAGGGCGCTGGAGCT 61.151 66.667 21.11 0.00 39.32 4.09
1 2 4.228567 GGACTAGGGCGCTGGAGC 62.229 72.222 21.11 11.45 37.78 4.70
2 3 2.759973 TGGACTAGGGCGCTGGAG 60.760 66.667 21.11 10.02 0.00 3.86
3 4 3.075005 GTGGACTAGGGCGCTGGA 61.075 66.667 21.11 0.00 0.00 3.86
4 5 4.514577 CGTGGACTAGGGCGCTGG 62.515 72.222 14.51 13.61 0.00 4.85
8 9 3.718210 GAAGGCGTGGACTAGGGCG 62.718 68.421 0.00 0.00 43.68 6.13
9 10 2.187163 GAAGGCGTGGACTAGGGC 59.813 66.667 0.00 0.00 39.76 5.19
10 11 1.677637 GGAGAAGGCGTGGACTAGGG 61.678 65.000 0.00 0.00 0.00 3.53
11 12 1.817209 GGAGAAGGCGTGGACTAGG 59.183 63.158 0.00 0.00 0.00 3.02
12 13 1.433879 CGGAGAAGGCGTGGACTAG 59.566 63.158 0.00 0.00 0.00 2.57
13 14 2.707849 GCGGAGAAGGCGTGGACTA 61.708 63.158 0.00 0.00 0.00 2.59
14 15 4.070552 GCGGAGAAGGCGTGGACT 62.071 66.667 0.00 0.00 0.00 3.85
15 16 4.373116 TGCGGAGAAGGCGTGGAC 62.373 66.667 0.00 0.00 0.00 4.02
16 17 4.373116 GTGCGGAGAAGGCGTGGA 62.373 66.667 0.00 0.00 0.00 4.02
17 18 4.680237 TGTGCGGAGAAGGCGTGG 62.680 66.667 0.00 0.00 0.00 4.94
18 19 3.114616 CTGTGCGGAGAAGGCGTG 61.115 66.667 0.00 0.00 0.00 5.34
21 22 4.704833 TGGCTGTGCGGAGAAGGC 62.705 66.667 6.22 6.22 37.04 4.35
22 23 1.600636 TTTGGCTGTGCGGAGAAGG 60.601 57.895 0.00 0.00 0.00 3.46
23 24 1.165907 TGTTTGGCTGTGCGGAGAAG 61.166 55.000 0.00 0.00 0.00 2.85
24 25 0.537143 ATGTTTGGCTGTGCGGAGAA 60.537 50.000 0.00 0.00 0.00 2.87
25 26 1.073025 ATGTTTGGCTGTGCGGAGA 59.927 52.632 0.00 0.00 0.00 3.71
26 27 1.210931 CATGTTTGGCTGTGCGGAG 59.789 57.895 0.00 0.00 0.00 4.63
27 28 1.514678 GACATGTTTGGCTGTGCGGA 61.515 55.000 0.00 0.00 0.00 5.54
28 29 1.081242 GACATGTTTGGCTGTGCGG 60.081 57.895 0.00 0.00 0.00 5.69
29 30 1.081242 GGACATGTTTGGCTGTGCG 60.081 57.895 0.00 0.00 0.00 5.34
30 31 0.038892 CTGGACATGTTTGGCTGTGC 60.039 55.000 0.00 0.00 34.65 4.57
31 32 1.538512 CTCTGGACATGTTTGGCTGTG 59.461 52.381 0.00 0.00 0.00 3.66
32 33 1.901591 CTCTGGACATGTTTGGCTGT 58.098 50.000 0.00 0.00 0.00 4.40
33 34 0.524862 GCTCTGGACATGTTTGGCTG 59.475 55.000 0.00 0.00 0.00 4.85
34 35 0.111061 TGCTCTGGACATGTTTGGCT 59.889 50.000 0.00 0.00 0.00 4.75
35 36 0.524862 CTGCTCTGGACATGTTTGGC 59.475 55.000 0.00 1.71 0.00 4.52
36 37 1.171308 CCTGCTCTGGACATGTTTGG 58.829 55.000 0.00 0.00 0.00 3.28
37 38 2.082231 CTCCTGCTCTGGACATGTTTG 58.918 52.381 0.00 0.00 31.94 2.93
38 39 1.004044 CCTCCTGCTCTGGACATGTTT 59.996 52.381 0.00 0.00 31.94 2.83
39 40 0.617413 CCTCCTGCTCTGGACATGTT 59.383 55.000 0.00 0.00 31.94 2.71
40 41 1.908340 GCCTCCTGCTCTGGACATGT 61.908 60.000 0.00 0.00 36.87 3.21
41 42 1.153208 GCCTCCTGCTCTGGACATG 60.153 63.158 0.00 0.00 36.87 3.21
42 43 1.203441 TTGCCTCCTGCTCTGGACAT 61.203 55.000 0.00 0.00 42.00 3.06
43 44 1.418097 TTTGCCTCCTGCTCTGGACA 61.418 55.000 0.00 0.00 42.00 4.02
44 45 0.034670 ATTTGCCTCCTGCTCTGGAC 60.035 55.000 0.00 0.00 42.00 4.02
45 46 0.034767 CATTTGCCTCCTGCTCTGGA 60.035 55.000 0.00 0.00 42.00 3.86
46 47 1.035932 CCATTTGCCTCCTGCTCTGG 61.036 60.000 0.00 0.00 42.00 3.86
47 48 1.035932 CCCATTTGCCTCCTGCTCTG 61.036 60.000 0.00 0.00 42.00 3.35
48 49 1.305623 CCCATTTGCCTCCTGCTCT 59.694 57.895 0.00 0.00 42.00 4.09
49 50 1.000396 ACCCATTTGCCTCCTGCTC 60.000 57.895 0.00 0.00 42.00 4.26
50 51 1.304713 CACCCATTTGCCTCCTGCT 60.305 57.895 0.00 0.00 42.00 4.24
51 52 2.353610 CCACCCATTTGCCTCCTGC 61.354 63.158 0.00 0.00 41.77 4.85
52 53 2.353610 GCCACCCATTTGCCTCCTG 61.354 63.158 0.00 0.00 0.00 3.86
53 54 2.037847 GCCACCCATTTGCCTCCT 59.962 61.111 0.00 0.00 0.00 3.69
54 55 3.076916 GGCCACCCATTTGCCTCC 61.077 66.667 0.00 0.00 42.01 4.30
57 58 3.076916 GGAGGCCACCCATTTGCC 61.077 66.667 8.25 0.00 45.70 4.52
58 59 2.283821 TGGAGGCCACCCATTTGC 60.284 61.111 17.45 0.00 0.00 3.68
67 68 3.636231 CCTTCACGGTGGAGGCCA 61.636 66.667 22.15 0.00 0.00 5.36
68 69 3.316573 CTCCTTCACGGTGGAGGCC 62.317 68.421 27.69 0.00 44.44 5.19
69 70 2.266055 CTCCTTCACGGTGGAGGC 59.734 66.667 27.69 0.00 44.44 4.70
73 74 1.903877 ATGCTCCTCCTTCACGGTGG 61.904 60.000 8.50 0.00 45.92 4.61
74 75 0.824109 TATGCTCCTCCTTCACGGTG 59.176 55.000 0.56 0.56 0.00 4.94
75 76 1.794714 ATATGCTCCTCCTTCACGGT 58.205 50.000 0.00 0.00 0.00 4.83
76 77 2.487934 CAATATGCTCCTCCTTCACGG 58.512 52.381 0.00 0.00 0.00 4.94
77 78 1.869767 GCAATATGCTCCTCCTTCACG 59.130 52.381 0.00 0.00 40.96 4.35
78 79 1.869767 CGCAATATGCTCCTCCTTCAC 59.130 52.381 0.43 0.00 42.25 3.18
79 80 1.762370 TCGCAATATGCTCCTCCTTCA 59.238 47.619 0.43 0.00 42.25 3.02
80 81 2.533266 TCGCAATATGCTCCTCCTTC 57.467 50.000 0.43 0.00 42.25 3.46
81 82 2.843701 CTTCGCAATATGCTCCTCCTT 58.156 47.619 0.43 0.00 42.25 3.36
82 83 1.542108 GCTTCGCAATATGCTCCTCCT 60.542 52.381 0.43 0.00 42.25 3.69
83 84 0.871057 GCTTCGCAATATGCTCCTCC 59.129 55.000 0.43 0.00 42.25 4.30
84 85 1.797635 GAGCTTCGCAATATGCTCCTC 59.202 52.381 0.00 0.00 44.16 3.71
85 86 1.876322 GAGCTTCGCAATATGCTCCT 58.124 50.000 0.00 0.00 44.16 3.69
88 89 0.882042 CCGGAGCTTCGCAATATGCT 60.882 55.000 9.56 0.00 42.25 3.79
89 90 1.571460 CCGGAGCTTCGCAATATGC 59.429 57.895 9.56 0.00 40.69 3.14
90 91 1.845809 GCCCGGAGCTTCGCAATATG 61.846 60.000 9.56 0.00 38.99 1.78
91 92 1.598130 GCCCGGAGCTTCGCAATAT 60.598 57.895 9.56 0.00 38.99 1.28
92 93 2.203015 GCCCGGAGCTTCGCAATA 60.203 61.111 9.56 0.00 38.99 1.90
106 107 4.929707 CCAAGTATCCGGCCGCCC 62.930 72.222 22.85 6.54 0.00 6.13
112 113 2.588877 CTGCGGCCAAGTATCCGG 60.589 66.667 2.24 0.00 45.37 5.14
114 115 0.179045 ATGTCTGCGGCCAAGTATCC 60.179 55.000 2.24 0.00 0.00 2.59
115 116 1.221414 GATGTCTGCGGCCAAGTATC 58.779 55.000 2.24 5.31 0.00 2.24
116 117 0.530650 CGATGTCTGCGGCCAAGTAT 60.531 55.000 2.24 0.00 0.00 2.12
117 118 1.153647 CGATGTCTGCGGCCAAGTA 60.154 57.895 2.24 0.00 0.00 2.24
118 119 2.434884 CGATGTCTGCGGCCAAGT 60.435 61.111 2.24 0.00 0.00 3.16
119 120 3.869272 GCGATGTCTGCGGCCAAG 61.869 66.667 2.24 0.00 0.00 3.61
129 130 4.865761 TAGCCGGTGCGCGATGTC 62.866 66.667 12.10 0.00 44.33 3.06
144 145 4.514577 CTGCCCTGCGTCCGGTAG 62.515 72.222 0.00 0.00 0.00 3.18
147 148 4.899239 GATCTGCCCTGCGTCCGG 62.899 72.222 0.00 0.00 0.00 5.14
148 149 2.930385 AATGATCTGCCCTGCGTCCG 62.930 60.000 0.00 0.00 0.00 4.79
149 150 1.153086 AATGATCTGCCCTGCGTCC 60.153 57.895 0.00 0.00 0.00 4.79
150 151 1.162800 GGAATGATCTGCCCTGCGTC 61.163 60.000 0.00 0.00 0.00 5.19
151 152 1.153086 GGAATGATCTGCCCTGCGT 60.153 57.895 0.00 0.00 0.00 5.24
152 153 0.749091 TTGGAATGATCTGCCCTGCG 60.749 55.000 0.00 0.00 0.00 5.18
153 154 0.743097 GTTGGAATGATCTGCCCTGC 59.257 55.000 0.00 0.00 0.00 4.85
154 155 2.295885 GAGTTGGAATGATCTGCCCTG 58.704 52.381 0.00 0.00 0.00 4.45
155 156 1.213926 GGAGTTGGAATGATCTGCCCT 59.786 52.381 0.00 0.00 0.00 5.19
156 157 1.685148 GGAGTTGGAATGATCTGCCC 58.315 55.000 0.00 0.00 0.00 5.36
157 158 1.303309 CGGAGTTGGAATGATCTGCC 58.697 55.000 0.00 0.00 0.00 4.85
158 159 1.303309 CCGGAGTTGGAATGATCTGC 58.697 55.000 0.00 0.00 0.00 4.26
159 160 1.486310 TCCCGGAGTTGGAATGATCTG 59.514 52.381 0.73 0.00 0.00 2.90
160 161 1.486726 GTCCCGGAGTTGGAATGATCT 59.513 52.381 0.73 0.00 32.59 2.75
161 162 1.475213 GGTCCCGGAGTTGGAATGATC 60.475 57.143 0.73 0.00 32.59 2.92
162 163 0.546598 GGTCCCGGAGTTGGAATGAT 59.453 55.000 0.73 0.00 32.59 2.45
163 164 1.559065 GGGTCCCGGAGTTGGAATGA 61.559 60.000 0.73 0.00 32.59 2.57
164 165 1.077716 GGGTCCCGGAGTTGGAATG 60.078 63.158 0.73 0.00 32.59 2.67
165 166 2.306384 GGGGTCCCGGAGTTGGAAT 61.306 63.158 0.73 0.00 32.59 3.01
166 167 2.931649 GGGGTCCCGGAGTTGGAA 60.932 66.667 0.73 0.00 32.59 3.53
167 168 4.257810 TGGGGTCCCGGAGTTGGA 62.258 66.667 0.73 0.00 39.42 3.53
168 169 4.029809 GTGGGGTCCCGGAGTTGG 62.030 72.222 0.73 0.00 39.42 3.77
169 170 4.388499 CGTGGGGTCCCGGAGTTG 62.388 72.222 0.73 0.00 39.42 3.16
170 171 4.626402 TCGTGGGGTCCCGGAGTT 62.626 66.667 0.73 0.00 39.42 3.01
172 173 4.753662 TCTCGTGGGGTCCCGGAG 62.754 72.222 0.73 16.31 39.27 4.63
173 174 4.753662 CTCTCGTGGGGTCCCGGA 62.754 72.222 0.73 0.00 39.42 5.14
191 192 2.047179 GAGGCAAGGGACACGACC 60.047 66.667 0.00 0.00 0.00 4.79
192 193 2.047179 GGAGGCAAGGGACACGAC 60.047 66.667 0.00 0.00 0.00 4.34
193 194 2.203788 AGGAGGCAAGGGACACGA 60.204 61.111 0.00 0.00 0.00 4.35
194 195 2.046892 CAGGAGGCAAGGGACACG 60.047 66.667 0.00 0.00 0.00 4.49
195 196 2.360475 GCAGGAGGCAAGGGACAC 60.360 66.667 0.00 0.00 43.97 3.67
212 213 3.181479 TGTGCGTCTAAGGCTAATGGTAG 60.181 47.826 0.00 0.00 0.00 3.18
213 214 2.761767 TGTGCGTCTAAGGCTAATGGTA 59.238 45.455 0.00 0.00 0.00 3.25
214 215 1.553248 TGTGCGTCTAAGGCTAATGGT 59.447 47.619 0.00 0.00 0.00 3.55
215 216 2.159099 TCTGTGCGTCTAAGGCTAATGG 60.159 50.000 0.00 0.00 0.00 3.16
216 217 3.165058 TCTGTGCGTCTAAGGCTAATG 57.835 47.619 0.00 0.00 0.00 1.90
217 218 3.551046 CGATCTGTGCGTCTAAGGCTAAT 60.551 47.826 0.00 0.00 0.00 1.73
218 219 2.223502 CGATCTGTGCGTCTAAGGCTAA 60.224 50.000 0.00 0.00 0.00 3.09
219 220 1.333931 CGATCTGTGCGTCTAAGGCTA 59.666 52.381 0.00 0.00 0.00 3.93
220 221 0.101399 CGATCTGTGCGTCTAAGGCT 59.899 55.000 0.00 0.00 0.00 4.58
221 222 0.872021 CCGATCTGTGCGTCTAAGGC 60.872 60.000 0.00 0.00 0.00 4.35
222 223 0.249073 CCCGATCTGTGCGTCTAAGG 60.249 60.000 0.00 0.00 0.00 2.69
223 224 0.738975 TCCCGATCTGTGCGTCTAAG 59.261 55.000 0.00 0.00 0.00 2.18
224 225 0.454600 GTCCCGATCTGTGCGTCTAA 59.545 55.000 0.00 0.00 0.00 2.10
225 226 1.381928 GGTCCCGATCTGTGCGTCTA 61.382 60.000 0.00 0.00 0.00 2.59
226 227 2.711922 GGTCCCGATCTGTGCGTCT 61.712 63.158 0.00 0.00 0.00 4.18
227 228 2.202756 GGTCCCGATCTGTGCGTC 60.203 66.667 0.00 0.00 0.00 5.19
228 229 3.771160 GGGTCCCGATCTGTGCGT 61.771 66.667 0.00 0.00 0.00 5.24
229 230 4.530857 GGGGTCCCGATCTGTGCG 62.531 72.222 0.48 0.00 0.00 5.34
230 231 4.176752 GGGGGTCCCGATCTGTGC 62.177 72.222 0.48 0.00 36.85 4.57
239 240 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
240 241 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
241 242 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
242 243 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
243 244 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
244 245 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
245 246 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
246 247 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
247 248 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
252 253 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
253 254 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
254 255 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
255 256 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
256 257 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
257 258 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
263 264 0.307760 CAGCTGTCGGTGTCAAAACC 59.692 55.000 5.25 0.00 36.82 3.27
264 265 0.307760 CCAGCTGTCGGTGTCAAAAC 59.692 55.000 13.81 0.00 36.93 2.43
265 266 0.817634 CCCAGCTGTCGGTGTCAAAA 60.818 55.000 13.81 0.00 36.93 2.44
266 267 1.227823 CCCAGCTGTCGGTGTCAAA 60.228 57.895 13.81 0.00 36.93 2.69
267 268 1.691195 TTCCCAGCTGTCGGTGTCAA 61.691 55.000 13.81 0.00 36.93 3.18
268 269 2.099652 CTTCCCAGCTGTCGGTGTCA 62.100 60.000 13.81 0.00 36.93 3.58
269 270 1.374758 CTTCCCAGCTGTCGGTGTC 60.375 63.158 13.81 0.00 36.93 3.67
270 271 2.743718 CTTCCCAGCTGTCGGTGT 59.256 61.111 13.81 0.00 36.93 4.16
271 272 2.046892 CCTTCCCAGCTGTCGGTG 60.047 66.667 13.81 5.56 38.35 4.94
272 273 4.021925 GCCTTCCCAGCTGTCGGT 62.022 66.667 13.81 0.00 0.00 4.69
273 274 4.785453 GGCCTTCCCAGCTGTCGG 62.785 72.222 13.81 7.88 0.00 4.79
274 275 4.020617 TGGCCTTCCCAGCTGTCG 62.021 66.667 13.81 1.99 39.18 4.35
275 276 2.360475 GTGGCCTTCCCAGCTGTC 60.360 66.667 13.81 0.00 46.54 3.51
276 277 2.085343 ATTGTGGCCTTCCCAGCTGT 62.085 55.000 13.81 0.00 46.54 4.40
277 278 1.304713 ATTGTGGCCTTCCCAGCTG 60.305 57.895 6.78 6.78 46.54 4.24
278 279 1.304713 CATTGTGGCCTTCCCAGCT 60.305 57.895 3.32 0.00 46.54 4.24
279 280 3.010413 GCATTGTGGCCTTCCCAGC 62.010 63.158 3.32 0.00 46.54 4.85
280 281 1.186917 TTGCATTGTGGCCTTCCCAG 61.187 55.000 3.32 0.00 46.54 4.45
281 282 1.152376 TTGCATTGTGGCCTTCCCA 60.152 52.632 3.32 0.00 42.79 4.37
282 283 1.593265 CTTGCATTGTGGCCTTCCC 59.407 57.895 3.32 0.00 0.00 3.97
283 284 1.593265 CCTTGCATTGTGGCCTTCC 59.407 57.895 3.32 0.00 0.00 3.46
284 285 1.079612 GCCTTGCATTGTGGCCTTC 60.080 57.895 3.32 0.00 40.71 3.46
285 286 1.837947 TGCCTTGCATTGTGGCCTT 60.838 52.632 3.32 0.00 45.56 4.35
306 307 4.743018 CCATCCACTGGTTCCACC 57.257 61.111 0.00 0.00 40.49 4.61
337 340 1.332195 CTCAGATCCCGCCTGACATA 58.668 55.000 0.00 0.00 35.89 2.29
376 379 2.685380 CCCCTGCCTCCTCTCGTT 60.685 66.667 0.00 0.00 0.00 3.85
378 381 3.151022 GACCCCTGCCTCCTCTCG 61.151 72.222 0.00 0.00 0.00 4.04
396 399 0.584876 AGGAAACAAACGCACGTAGC 59.415 50.000 0.00 0.00 40.87 3.58
437 440 3.792956 CACACACAATGCAACAGAAGAAC 59.207 43.478 0.00 0.00 0.00 3.01
450 453 4.142204 TGAATTGCAGACAACACACACAAT 60.142 37.500 0.00 0.00 38.99 2.71
464 467 5.590449 CGACCAAACGAAACTGAATTGCAG 61.590 45.833 0.00 0.00 42.03 4.41
471 474 0.533308 CCCCGACCAAACGAAACTGA 60.533 55.000 0.00 0.00 35.09 3.41
487 490 2.036731 CCTCCCCGGTTTTTCCCC 59.963 66.667 0.00 0.00 0.00 4.81
495 499 1.766461 CATTAGCCTCCTCCCCGGT 60.766 63.158 0.00 0.00 0.00 5.28
497 501 0.322975 CATCATTAGCCTCCTCCCCG 59.677 60.000 0.00 0.00 0.00 5.73
505 509 3.134804 GTCCCACTACACATCATTAGCCT 59.865 47.826 0.00 0.00 0.00 4.58
509 513 4.202212 CCATCGTCCCACTACACATCATTA 60.202 45.833 0.00 0.00 0.00 1.90
510 514 3.432186 CCATCGTCCCACTACACATCATT 60.432 47.826 0.00 0.00 0.00 2.57
512 516 1.480545 CCATCGTCCCACTACACATCA 59.519 52.381 0.00 0.00 0.00 3.07
544 548 2.671070 CACCATGTTCCGCCCTCT 59.329 61.111 0.00 0.00 0.00 3.69
561 565 0.318699 GTTCCTTTTCCTGCCGTTGC 60.319 55.000 0.00 0.00 38.26 4.17
632 1622 3.802948 ACTAGTAATGCCTTCGTCCAG 57.197 47.619 0.00 0.00 0.00 3.86
639 1630 6.497606 GGGACTATCCTAACTAGTAATGCCTT 59.502 42.308 0.00 0.00 36.57 4.35
645 1636 8.439971 TCGTAATGGGACTATCCTAACTAGTAA 58.560 37.037 0.00 0.00 36.57 2.24
853 4809 2.417719 CCATCTGGCCTAAATCGCTAC 58.582 52.381 3.32 0.00 0.00 3.58
907 4863 3.304257 CTGATCGATCGAGTGATTGACC 58.696 50.000 23.84 4.53 45.61 4.02
1062 5018 2.726351 GGAGAAGGGGGAGCTCACG 61.726 68.421 17.19 0.00 0.00 4.35
1104 5060 1.612463 GAATAGAGTACGGACGGGCAT 59.388 52.381 0.00 0.00 0.00 4.40
1165 5121 7.997773 AGCCTTTACATATCGTATCTACAGA 57.002 36.000 0.00 0.00 0.00 3.41
1209 5165 5.321927 TCAAATCTAAAACTTCCAGGACCC 58.678 41.667 0.00 0.00 0.00 4.46
1224 5180 9.416794 GAGATCAATCGAAATAGCTCAAATCTA 57.583 33.333 0.00 0.00 0.00 1.98
1387 5343 7.266922 AGTAGGTTCGACTCTATCTTGATTC 57.733 40.000 0.00 0.00 0.00 2.52
1388 5344 8.927675 ATAGTAGGTTCGACTCTATCTTGATT 57.072 34.615 0.00 0.00 0.00 2.57
1402 5358 3.430218 GCAGCAAGCATATAGTAGGTTCG 59.570 47.826 0.00 0.00 44.79 3.95
1441 5401 3.533606 ACCTGAGATCGGTTCTGATTG 57.466 47.619 0.00 0.00 33.74 2.67
1490 5450 5.534278 TCTTCTCCTATACTGCTCACATCAG 59.466 44.000 0.00 0.00 37.56 2.90
1714 5687 0.536006 GAGCAGTTGGGCAAGACAGT 60.536 55.000 0.00 0.00 35.83 3.55
1766 5739 5.105675 GCGAAATTCCCCAAATTAGTACCAA 60.106 40.000 0.00 0.00 36.54 3.67
1768 5741 4.643334 AGCGAAATTCCCCAAATTAGTACC 59.357 41.667 0.00 0.00 36.54 3.34
1878 5851 2.264480 CCGACCTCAATGCCGTGA 59.736 61.111 0.00 0.00 0.00 4.35
2002 5975 4.998672 ACATGCCATCATTCAAAAACAAGG 59.001 37.500 0.00 0.00 0.00 3.61
2019 5992 3.606346 GCGTAACACAATACAAACATGCC 59.394 43.478 0.00 0.00 0.00 4.40
2133 6106 1.585521 GCATTGTCATCGCAGCTGC 60.586 57.895 29.12 29.12 37.78 5.25
2143 6116 7.165485 AGTATATATAAAAGCCGGCATTGTCA 58.835 34.615 31.54 12.54 0.00 3.58
2147 6120 8.630054 TTCAAGTATATATAAAAGCCGGCATT 57.370 30.769 31.54 22.08 0.00 3.56
2203 6176 2.168521 GCTTGTACTATCTGGTGCTGGA 59.831 50.000 0.00 0.00 0.00 3.86
2236 6209 5.408604 ACAATCAACGAGTAAAGCCAGTAAG 59.591 40.000 0.00 0.00 0.00 2.34
2252 6225 4.096984 CCTTCCATCCTAGCAACAATCAAC 59.903 45.833 0.00 0.00 0.00 3.18
2272 6249 3.979347 ACATCCTCTCTTGCCATATCCTT 59.021 43.478 0.00 0.00 0.00 3.36
2503 6480 2.110901 ACAGATACAGTCGAGACGGT 57.889 50.000 13.02 13.02 42.19 4.83
2563 6540 2.997986 CGGAGTTTAACACGGCTGTATT 59.002 45.455 0.00 0.00 0.00 1.89
2577 6556 3.007635 GCTATAGTTGCAACCGGAGTTT 58.992 45.455 25.62 8.18 32.45 2.66
2603 6583 2.564947 AGAAACAACCCACACAAAAGCA 59.435 40.909 0.00 0.00 0.00 3.91
2669 6652 4.794169 ACAAGTAAATTTGACGATGCACC 58.206 39.130 0.00 0.00 0.00 5.01
2670 6653 5.912396 TCAACAAGTAAATTTGACGATGCAC 59.088 36.000 0.00 0.00 0.00 4.57
2681 6664 9.492973 CCCAATTTCATCTTCAACAAGTAAATT 57.507 29.630 0.00 0.00 33.14 1.82
2693 6676 3.368739 CCAGGCAACCCAATTTCATCTTC 60.369 47.826 0.00 0.00 37.17 2.87
2698 6681 2.323999 ATCCAGGCAACCCAATTTCA 57.676 45.000 0.00 0.00 37.17 2.69
2711 6694 2.494471 TGCTGCTCAAAATGAATCCAGG 59.506 45.455 0.00 0.00 0.00 4.45
2712 6695 3.192844 AGTGCTGCTCAAAATGAATCCAG 59.807 43.478 0.00 0.00 0.00 3.86
2750 6733 8.776470 CCAAACAACGGAGAACTAAATTAGTAA 58.224 33.333 6.04 0.00 38.26 2.24
2751 6734 8.149647 TCCAAACAACGGAGAACTAAATTAGTA 58.850 33.333 6.04 0.00 38.26 1.82
2752 6735 6.993902 TCCAAACAACGGAGAACTAAATTAGT 59.006 34.615 0.00 0.00 41.73 2.24
2753 6736 7.041644 TGTCCAAACAACGGAGAACTAAATTAG 60.042 37.037 0.00 0.00 31.65 1.73
2767 7193 8.812329 TCTTCAAAAATTAATGTCCAAACAACG 58.188 29.630 0.00 0.00 39.30 4.10
2783 7209 6.397272 TCCGCAAAGCATATTCTTCAAAAAT 58.603 32.000 0.00 0.00 0.00 1.82
2784 7210 5.777802 TCCGCAAAGCATATTCTTCAAAAA 58.222 33.333 0.00 0.00 0.00 1.94
2785 7211 5.384063 TCCGCAAAGCATATTCTTCAAAA 57.616 34.783 0.00 0.00 0.00 2.44
2786 7212 5.160641 GTTCCGCAAAGCATATTCTTCAAA 58.839 37.500 0.00 0.00 0.00 2.69
2787 7213 4.217334 TGTTCCGCAAAGCATATTCTTCAA 59.783 37.500 0.00 0.00 0.00 2.69
2788 7214 3.755905 TGTTCCGCAAAGCATATTCTTCA 59.244 39.130 0.00 0.00 0.00 3.02
2806 7237 6.147328 AGCGTTTATAGAAGGTTTCTGTGTTC 59.853 38.462 1.71 0.00 40.94 3.18
2817 7248 5.984233 TTGTATGCAGCGTTTATAGAAGG 57.016 39.130 0.00 0.00 0.00 3.46
2824 7255 4.806775 ACATCGTATTGTATGCAGCGTTTA 59.193 37.500 0.00 0.00 0.00 2.01
2825 7256 3.621268 ACATCGTATTGTATGCAGCGTTT 59.379 39.130 0.00 0.00 0.00 3.60
2837 7271 7.259290 AGGGCATTTTAGTAACATCGTATTG 57.741 36.000 0.00 0.00 0.00 1.90
2860 7296 6.500589 TCTCCCCTCCTTTAAACATCATAG 57.499 41.667 0.00 0.00 0.00 2.23
2880 7316 0.654683 GATGCACACAGCCGATTCTC 59.345 55.000 0.00 0.00 44.83 2.87
2881 7317 1.086067 CGATGCACACAGCCGATTCT 61.086 55.000 0.00 0.00 44.83 2.40
2882 7318 1.349627 CGATGCACACAGCCGATTC 59.650 57.895 0.00 0.00 44.83 2.52
2883 7319 2.753966 GCGATGCACACAGCCGATT 61.754 57.895 0.00 0.00 44.83 3.34
2917 7361 1.952621 TTCGTGAAGGGGAAGATCCT 58.047 50.000 0.00 0.00 36.57 3.24
2982 7426 2.223089 CCGCCCCTTACGAAATTAAACG 60.223 50.000 0.00 0.00 0.00 3.60
3035 7479 4.892934 TGTAACTTTGATTGGGCTCTTTGT 59.107 37.500 0.00 0.00 0.00 2.83
3098 7543 3.494398 CGCATATACTAGCCTTTGGTGGT 60.494 47.826 0.00 0.00 37.46 4.16
3191 7636 2.933906 GCGACAACTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
3192 7637 2.675844 TGCGACAACTAATTCCGAATGG 59.324 45.455 0.00 0.00 0.00 3.16
3193 7638 3.616821 TCTGCGACAACTAATTCCGAATG 59.383 43.478 0.00 0.00 0.00 2.67
3194 7639 3.857052 TCTGCGACAACTAATTCCGAAT 58.143 40.909 0.00 0.00 0.00 3.34
3195 7640 3.306917 TCTGCGACAACTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
3196 7641 3.306917 TTCTGCGACAACTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
3197 7642 4.092821 TCATTTCTGCGACAACTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
3198 7643 5.545658 TCATTTCTGCGACAACTAATTCC 57.454 39.130 0.00 0.00 0.00 3.01
3199 7644 7.023575 ACATTCATTTCTGCGACAACTAATTC 58.976 34.615 0.00 0.00 0.00 2.17
3200 7645 6.913170 ACATTCATTTCTGCGACAACTAATT 58.087 32.000 0.00 0.00 0.00 1.40
3201 7646 6.500684 ACATTCATTTCTGCGACAACTAAT 57.499 33.333 0.00 0.00 0.00 1.73
3202 7647 5.940192 ACATTCATTTCTGCGACAACTAA 57.060 34.783 0.00 0.00 0.00 2.24
3203 7648 7.041721 AGATACATTCATTTCTGCGACAACTA 58.958 34.615 0.00 0.00 0.00 2.24
3204 7649 5.877012 AGATACATTCATTTCTGCGACAACT 59.123 36.000 0.00 0.00 0.00 3.16
3205 7650 6.111768 AGATACATTCATTTCTGCGACAAC 57.888 37.500 0.00 0.00 0.00 3.32
3206 7651 7.264947 TCTAGATACATTCATTTCTGCGACAA 58.735 34.615 0.00 0.00 0.00 3.18
3207 7652 6.805713 TCTAGATACATTCATTTCTGCGACA 58.194 36.000 0.00 0.00 0.00 4.35
3208 7653 7.383572 ACATCTAGATACATTCATTTCTGCGAC 59.616 37.037 4.54 0.00 0.00 5.19
3209 7654 7.436933 ACATCTAGATACATTCATTTCTGCGA 58.563 34.615 4.54 0.00 0.00 5.10
3210 7655 7.649370 ACATCTAGATACATTCATTTCTGCG 57.351 36.000 4.54 0.00 0.00 5.18
3240 7685 9.606631 GTCTCAGAAATGGATGTATTTAGAACT 57.393 33.333 0.00 0.00 30.78 3.01
3241 7686 9.383519 TGTCTCAGAAATGGATGTATTTAGAAC 57.616 33.333 0.00 0.00 30.78 3.01
3242 7687 9.958180 TTGTCTCAGAAATGGATGTATTTAGAA 57.042 29.630 0.00 0.00 30.78 2.10
3243 7688 9.605275 CTTGTCTCAGAAATGGATGTATTTAGA 57.395 33.333 0.00 0.00 30.78 2.10
3244 7689 9.388506 ACTTGTCTCAGAAATGGATGTATTTAG 57.611 33.333 0.00 0.00 30.78 1.85
3246 7691 9.739276 TTACTTGTCTCAGAAATGGATGTATTT 57.261 29.630 0.00 0.00 33.19 1.40
3247 7692 9.911788 ATTACTTGTCTCAGAAATGGATGTATT 57.088 29.630 0.00 0.00 0.00 1.89
3248 7693 9.911788 AATTACTTGTCTCAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
3249 7694 9.383519 GAATTACTTGTCTCAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
3250 7695 7.884877 TGAATTACTTGTCTCAGAAATGGATGT 59.115 33.333 0.00 0.00 0.00 3.06
3251 7696 8.272545 TGAATTACTTGTCTCAGAAATGGATG 57.727 34.615 0.00 0.00 0.00 3.51
3252 7697 8.324306 TCTGAATTACTTGTCTCAGAAATGGAT 58.676 33.333 0.00 0.00 40.94 3.41
3253 7698 7.679783 TCTGAATTACTTGTCTCAGAAATGGA 58.320 34.615 0.00 0.00 40.94 3.41
3254 7699 7.912056 TCTGAATTACTTGTCTCAGAAATGG 57.088 36.000 0.00 0.00 40.94 3.16
3259 7704 5.243060 TCCGTTCTGAATTACTTGTCTCAGA 59.757 40.000 0.00 0.00 41.89 3.27
3260 7705 5.470368 TCCGTTCTGAATTACTTGTCTCAG 58.530 41.667 0.00 0.00 37.28 3.35
3261 7706 5.462530 TCCGTTCTGAATTACTTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
3262 7707 4.865365 CCTCCGTTCTGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
3263 7708 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
3264 7709 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
3265 7710 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
3266 7711 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
3267 7712 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
3268 7713 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
3269 7714 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
3270 7715 4.346730 TGTACTCCCTCCGTTCTGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
3271 7716 3.170717 TGTACTCCCTCCGTTCTGAATT 58.829 45.455 0.00 0.00 0.00 2.17
3272 7717 2.816411 TGTACTCCCTCCGTTCTGAAT 58.184 47.619 0.00 0.00 0.00 2.57
3273 7718 2.297698 TGTACTCCCTCCGTTCTGAA 57.702 50.000 0.00 0.00 0.00 3.02
3274 7719 2.100197 CATGTACTCCCTCCGTTCTGA 58.900 52.381 0.00 0.00 0.00 3.27
3275 7720 1.825474 ACATGTACTCCCTCCGTTCTG 59.175 52.381 0.00 0.00 0.00 3.02
3276 7721 2.233305 ACATGTACTCCCTCCGTTCT 57.767 50.000 0.00 0.00 0.00 3.01
3277 7722 3.737355 GCTTACATGTACTCCCTCCGTTC 60.737 52.174 4.68 0.00 0.00 3.95
3278 7723 2.167900 GCTTACATGTACTCCCTCCGTT 59.832 50.000 4.68 0.00 0.00 4.44
3279 7724 1.755380 GCTTACATGTACTCCCTCCGT 59.245 52.381 4.68 0.00 0.00 4.69
3280 7725 1.068741 GGCTTACATGTACTCCCTCCG 59.931 57.143 4.68 0.00 0.00 4.63
3281 7726 2.365941 GAGGCTTACATGTACTCCCTCC 59.634 54.545 23.06 12.20 33.08 4.30
3282 7727 2.365941 GGAGGCTTACATGTACTCCCTC 59.634 54.545 24.36 24.36 41.41 4.30
3283 7728 2.292918 TGGAGGCTTACATGTACTCCCT 60.293 50.000 26.46 21.03 45.53 4.20
3284 7729 2.116238 TGGAGGCTTACATGTACTCCC 58.884 52.381 26.46 17.78 45.53 4.30
3285 7730 3.906720 TTGGAGGCTTACATGTACTCC 57.093 47.619 24.36 24.36 46.14 3.85
3286 7731 6.183360 GGAATTTTGGAGGCTTACATGTACTC 60.183 42.308 4.68 9.06 0.00 2.59
3287 7732 5.652452 GGAATTTTGGAGGCTTACATGTACT 59.348 40.000 4.68 0.00 0.00 2.73
3288 7733 5.448632 CGGAATTTTGGAGGCTTACATGTAC 60.449 44.000 4.68 0.00 0.00 2.90
3316 7761 3.142174 GCTTTGCTATATCCTGACACCC 58.858 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.