Multiple sequence alignment - TraesCS6B01G294300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G294300 chr6B 100.000 3272 0 0 3463 6734 528619855 528623126 0.000000e+00 6043.0
1 TraesCS6B01G294300 chr6B 100.000 2444 0 0 650 3093 528617042 528619485 0.000000e+00 4514.0
2 TraesCS6B01G294300 chr6B 100.000 317 0 0 1 317 528616393 528616709 2.710000e-163 586.0
3 TraesCS6B01G294300 chr6A 97.052 2137 52 6 3737 5870 492704692 492706820 0.000000e+00 3587.0
4 TraesCS6B01G294300 chr6A 93.878 1813 61 15 1307 3093 492702487 492704275 0.000000e+00 2687.0
5 TraesCS6B01G294300 chr6A 96.089 537 19 2 650 1186 492701967 492702501 0.000000e+00 874.0
6 TraesCS6B01G294300 chr6A 92.973 370 13 5 5973 6331 492706818 492707185 1.660000e-145 527.0
7 TraesCS6B01G294300 chr6A 97.909 287 6 0 3537 3823 492704318 492704604 1.300000e-136 497.0
8 TraesCS6B01G294300 chr6A 91.641 323 20 4 6417 6734 492707339 492707659 2.230000e-119 440.0
9 TraesCS6B01G294300 chr6A 94.211 190 6 3 99 283 492701623 492701812 1.110000e-72 285.0
10 TraesCS6B01G294300 chr6A 91.057 123 7 3 1187 1306 186999958 186999837 5.400000e-36 163.0
11 TraesCS6B01G294300 chr6A 93.458 107 5 1 1202 1308 420952368 420952264 2.510000e-34 158.0
12 TraesCS6B01G294300 chr6A 97.701 87 2 0 3737 3823 492704605 492704691 4.210000e-32 150.0
13 TraesCS6B01G294300 chr6D 96.776 2140 54 8 3737 5870 351114625 351112495 0.000000e+00 3555.0
14 TraesCS6B01G294300 chr6D 92.971 1821 57 21 1307 3093 351116738 351114955 0.000000e+00 2588.0
15 TraesCS6B01G294300 chr6D 96.945 491 14 1 650 1140 351117244 351116755 0.000000e+00 822.0
16 TraesCS6B01G294300 chr6D 90.511 411 24 9 5973 6370 351112497 351112089 4.620000e-146 529.0
17 TraesCS6B01G294300 chr6D 97.909 287 6 0 3537 3823 351114912 351114626 1.300000e-136 497.0
18 TraesCS6B01G294300 chr6D 92.236 322 19 4 6417 6734 351111609 351111290 1.030000e-122 451.0
19 TraesCS6B01G294300 chr6D 95.690 232 4 2 89 315 351117516 351117286 1.070000e-97 368.0
20 TraesCS6B01G294300 chr6D 100.000 33 0 0 1154 1186 351116756 351116724 2.030000e-05 62.1
21 TraesCS6B01G294300 chr5B 97.541 122 3 0 1187 1308 376348930 376348809 6.840000e-50 209.0
22 TraesCS6B01G294300 chr5B 95.082 122 4 1 1187 1308 526527589 526527470 2.480000e-44 191.0
23 TraesCS6B01G294300 chr2A 98.148 108 2 0 5868 5975 3757409 3757516 8.920000e-44 189.0
24 TraesCS6B01G294300 chr5A 98.131 107 2 0 5869 5975 706334603 706334497 3.210000e-43 187.0
25 TraesCS6B01G294300 chr5A 89.552 134 11 3 5851 5982 382564855 382564723 4.180000e-37 167.0
26 TraesCS6B01G294300 chr2B 96.396 111 4 0 5865 5975 793498807 793498697 4.150000e-42 183.0
27 TraesCS6B01G294300 chr2B 93.443 122 8 0 1187 1308 68336636 68336515 1.490000e-41 182.0
28 TraesCS6B01G294300 chr7D 95.455 110 5 0 5866 5975 262472274 262472165 6.940000e-40 176.0
29 TraesCS6B01G294300 chr1D 95.455 110 5 0 5866 5975 186442406 186442515 6.940000e-40 176.0
30 TraesCS6B01G294300 chr1D 95.455 110 5 0 5866 5975 419809636 419809745 6.940000e-40 176.0
31 TraesCS6B01G294300 chr1B 93.333 120 6 2 5858 5975 438648168 438648049 6.940000e-40 176.0
32 TraesCS6B01G294300 chr3B 93.966 116 6 1 5864 5979 803868180 803868066 2.500000e-39 174.0
33 TraesCS6B01G294300 chr4A 92.562 121 7 1 1187 1307 674632105 674632223 8.980000e-39 172.0
34 TraesCS6B01G294300 chr7A 91.129 124 11 0 1187 1310 716399167 716399044 1.160000e-37 169.0
35 TraesCS6B01G294300 chr1A 90.244 123 8 3 1187 1308 98591920 98591801 2.510000e-34 158.0
36 TraesCS6B01G294300 chr3D 91.379 116 7 3 1202 1315 597297784 597297670 9.040000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G294300 chr6B 528616393 528623126 6733 False 3714.333333 6043 100.00000 1 6734 3 chr6B.!!$F1 6733
1 TraesCS6B01G294300 chr6A 492701623 492707659 6036 False 1130.875000 3587 95.18175 99 6734 8 chr6A.!!$F1 6635
2 TraesCS6B01G294300 chr6D 351111290 351117516 6226 True 1109.012500 3555 95.37975 89 6734 8 chr6D.!!$R1 6645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.175073 GTAGGGTCCTGCGTGTAAGG 59.825 60.0 0.00 0.00 36.02 2.69 F
30 31 0.250166 GGTCCTGCGTGTAAGGTGTT 60.250 55.0 0.00 0.00 36.14 3.32 F
84 85 0.320374 TCCCTACAACTCAGCAACGG 59.680 55.0 0.00 0.00 0.00 4.44 F
1214 1220 0.179081 GGCTATTGTGGACCTCCGTC 60.179 60.0 0.00 0.00 39.43 4.79 F
1653 1672 0.037605 CTTGCTTCCCGGTAGTTCGT 60.038 55.0 0.00 0.00 0.00 3.85 F
3027 3090 0.324614 TCATAGTGGTGGCACTGTGG 59.675 55.0 18.45 3.12 42.25 4.17 F
3499 3562 0.110295 TGTCCAACATGGTGGTGAGG 59.890 55.0 28.83 3.38 37.20 3.86 F
3511 3574 0.753867 TGGTGAGGCGAACTGTGTTA 59.246 50.0 0.00 0.00 0.00 2.41 F
5209 5448 0.184933 TGCCTTTACCCAACTGCAGT 59.815 50.0 15.25 15.25 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 1201 0.179081 GACGGAGGTCCACAATAGCC 60.179 60.000 0.00 0.00 37.19 3.93 R
1208 1214 0.179111 ACACACACACACAGACGGAG 60.179 55.000 0.00 0.00 0.00 4.63 R
1253 1259 0.247736 AAAGCCAACCGCACAACAAA 59.752 45.000 0.00 0.00 41.38 2.83 R
3031 3094 0.251073 TAGGGTAACTGAAAGGCGGC 59.749 55.000 0.00 0.00 39.30 6.53 R
3480 3543 0.110295 CCTCACCACCATGTTGGACA 59.890 55.000 17.31 0.49 40.96 4.02 R
4456 4694 1.116536 TAGCACGTGAAGGGACACCA 61.117 55.000 22.23 0.00 40.13 4.17 R
5149 5388 1.273606 GTACAGGACTTGAGAGCAGCA 59.726 52.381 0.00 0.00 0.00 4.41 R
5275 5516 2.039746 TCCGGAAAAGGAGAGCATTCAA 59.960 45.455 0.00 0.00 34.92 2.69 R
6224 6469 0.179000 CCAGGATCTTCCCCTTCACG 59.821 60.000 0.00 0.00 37.19 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.372852 TGTTCCTGTAGGGTCCTGC 58.627 57.895 0.00 0.00 36.25 4.85
19 20 1.218316 GTTCCTGTAGGGTCCTGCG 59.782 63.158 0.00 0.00 36.25 5.18
20 21 1.229082 TTCCTGTAGGGTCCTGCGT 60.229 57.895 0.00 0.00 36.25 5.24
21 22 1.541310 TTCCTGTAGGGTCCTGCGTG 61.541 60.000 0.00 0.00 36.25 5.34
22 23 2.283529 CCTGTAGGGTCCTGCGTGT 61.284 63.158 0.00 0.00 0.00 4.49
23 24 0.968901 CCTGTAGGGTCCTGCGTGTA 60.969 60.000 0.00 0.00 0.00 2.90
24 25 0.892755 CTGTAGGGTCCTGCGTGTAA 59.107 55.000 0.00 0.00 0.00 2.41
25 26 0.892755 TGTAGGGTCCTGCGTGTAAG 59.107 55.000 0.00 0.00 0.00 2.34
26 27 0.175073 GTAGGGTCCTGCGTGTAAGG 59.825 60.000 0.00 0.00 36.02 2.69
27 28 0.251922 TAGGGTCCTGCGTGTAAGGT 60.252 55.000 0.00 0.00 36.14 3.50
28 29 1.375523 GGGTCCTGCGTGTAAGGTG 60.376 63.158 0.00 0.00 36.14 4.00
29 30 1.370064 GGTCCTGCGTGTAAGGTGT 59.630 57.895 0.00 0.00 36.14 4.16
30 31 0.250166 GGTCCTGCGTGTAAGGTGTT 60.250 55.000 0.00 0.00 36.14 3.32
31 32 0.865769 GTCCTGCGTGTAAGGTGTTG 59.134 55.000 0.00 0.00 36.14 3.33
32 33 0.466543 TCCTGCGTGTAAGGTGTTGT 59.533 50.000 0.00 0.00 36.14 3.32
33 34 1.687660 TCCTGCGTGTAAGGTGTTGTA 59.312 47.619 0.00 0.00 36.14 2.41
34 35 2.300723 TCCTGCGTGTAAGGTGTTGTAT 59.699 45.455 0.00 0.00 36.14 2.29
35 36 2.415168 CCTGCGTGTAAGGTGTTGTATG 59.585 50.000 0.00 0.00 0.00 2.39
36 37 1.801771 TGCGTGTAAGGTGTTGTATGC 59.198 47.619 0.00 0.00 0.00 3.14
37 38 1.129811 GCGTGTAAGGTGTTGTATGCC 59.870 52.381 0.00 0.00 0.00 4.40
38 39 2.418692 CGTGTAAGGTGTTGTATGCCA 58.581 47.619 0.00 0.00 0.00 4.92
39 40 2.158841 CGTGTAAGGTGTTGTATGCCAC 59.841 50.000 0.00 0.00 0.00 5.01
40 41 2.158841 GTGTAAGGTGTTGTATGCCACG 59.841 50.000 0.00 0.00 32.30 4.94
41 42 2.037381 TGTAAGGTGTTGTATGCCACGA 59.963 45.455 0.00 0.00 32.30 4.35
42 43 1.519408 AAGGTGTTGTATGCCACGAC 58.481 50.000 0.00 0.03 41.38 4.34
43 44 0.685097 AGGTGTTGTATGCCACGACT 59.315 50.000 7.29 0.00 41.55 4.18
44 45 1.071699 AGGTGTTGTATGCCACGACTT 59.928 47.619 7.29 0.00 41.55 3.01
45 46 1.463444 GGTGTTGTATGCCACGACTTC 59.537 52.381 7.29 2.19 41.55 3.01
46 47 1.126113 GTGTTGTATGCCACGACTTCG 59.874 52.381 0.00 0.00 41.55 3.79
47 48 1.000052 TGTTGTATGCCACGACTTCGA 60.000 47.619 5.47 0.00 41.55 3.71
48 49 2.063266 GTTGTATGCCACGACTTCGAA 58.937 47.619 5.47 0.00 43.02 3.71
49 50 2.665649 TGTATGCCACGACTTCGAAT 57.334 45.000 5.47 0.00 43.02 3.34
50 51 3.786516 TGTATGCCACGACTTCGAATA 57.213 42.857 5.47 0.00 43.02 1.75
51 52 4.112716 TGTATGCCACGACTTCGAATAA 57.887 40.909 5.47 0.00 43.02 1.40
52 53 4.689071 TGTATGCCACGACTTCGAATAAT 58.311 39.130 5.47 0.00 43.02 1.28
53 54 4.506288 TGTATGCCACGACTTCGAATAATG 59.494 41.667 5.47 0.00 43.02 1.90
54 55 3.239587 TGCCACGACTTCGAATAATGA 57.760 42.857 5.47 0.00 43.02 2.57
55 56 3.591023 TGCCACGACTTCGAATAATGAA 58.409 40.909 5.47 0.00 43.02 2.57
56 57 3.616821 TGCCACGACTTCGAATAATGAAG 59.383 43.478 5.47 1.42 46.49 3.02
57 58 3.544244 GCCACGACTTCGAATAATGAAGC 60.544 47.826 5.47 0.00 45.29 3.86
58 59 3.616821 CCACGACTTCGAATAATGAAGCA 59.383 43.478 5.47 0.00 45.29 3.91
59 60 4.271049 CCACGACTTCGAATAATGAAGCAT 59.729 41.667 5.47 0.00 45.29 3.79
60 61 5.427082 CACGACTTCGAATAATGAAGCATC 58.573 41.667 5.47 0.00 45.29 3.91
61 62 5.233050 CACGACTTCGAATAATGAAGCATCT 59.767 40.000 5.47 0.00 45.29 2.90
62 63 5.233050 ACGACTTCGAATAATGAAGCATCTG 59.767 40.000 5.47 0.00 45.29 2.90
63 64 5.332883 CGACTTCGAATAATGAAGCATCTGG 60.333 44.000 0.00 0.00 45.29 3.86
64 65 5.431765 ACTTCGAATAATGAAGCATCTGGT 58.568 37.500 0.00 0.00 45.29 4.00
65 66 5.882557 ACTTCGAATAATGAAGCATCTGGTT 59.117 36.000 0.00 0.00 45.29 3.67
73 74 3.350219 GAAGCATCTGGTTCCCTACAA 57.650 47.619 10.30 0.00 44.29 2.41
74 75 2.789409 AGCATCTGGTTCCCTACAAC 57.211 50.000 0.00 0.00 0.00 3.32
75 76 2.269940 AGCATCTGGTTCCCTACAACT 58.730 47.619 0.00 0.00 0.00 3.16
76 77 2.237392 AGCATCTGGTTCCCTACAACTC 59.763 50.000 0.00 0.00 0.00 3.01
77 78 2.027192 GCATCTGGTTCCCTACAACTCA 60.027 50.000 0.00 0.00 0.00 3.41
78 79 3.866651 CATCTGGTTCCCTACAACTCAG 58.133 50.000 0.00 0.00 0.00 3.35
79 80 1.623811 TCTGGTTCCCTACAACTCAGC 59.376 52.381 0.00 0.00 30.58 4.26
80 81 1.347707 CTGGTTCCCTACAACTCAGCA 59.652 52.381 0.00 0.00 0.00 4.41
81 82 1.771854 TGGTTCCCTACAACTCAGCAA 59.228 47.619 0.00 0.00 0.00 3.91
82 83 2.152016 GGTTCCCTACAACTCAGCAAC 58.848 52.381 0.00 0.00 0.00 4.17
83 84 1.798813 GTTCCCTACAACTCAGCAACG 59.201 52.381 0.00 0.00 0.00 4.10
84 85 0.320374 TCCCTACAACTCAGCAACGG 59.680 55.000 0.00 0.00 0.00 4.44
85 86 0.320374 CCCTACAACTCAGCAACGGA 59.680 55.000 0.00 0.00 0.00 4.69
86 87 1.066143 CCCTACAACTCAGCAACGGAT 60.066 52.381 0.00 0.00 0.00 4.18
87 88 2.167693 CCCTACAACTCAGCAACGGATA 59.832 50.000 0.00 0.00 0.00 2.59
97 98 9.221775 CAACTCAGCAACGGATAAAATATAAAC 57.778 33.333 0.00 0.00 0.00 2.01
983 989 4.695455 GCCTCAGTTTATGTCTGTGCTTTA 59.305 41.667 0.00 0.00 34.86 1.85
1136 1142 6.809196 AGATAACTTTCTGTCATCTCGTTGTC 59.191 38.462 0.00 0.00 0.00 3.18
1177 1183 5.743872 GTCATAATCCTTTGAACGAATTGGC 59.256 40.000 0.00 0.00 0.00 4.52
1178 1184 5.417266 TCATAATCCTTTGAACGAATTGGCA 59.583 36.000 0.00 0.00 0.00 4.92
1179 1185 4.806640 AATCCTTTGAACGAATTGGCAT 57.193 36.364 0.00 0.00 0.00 4.40
1180 1186 4.806640 ATCCTTTGAACGAATTGGCATT 57.193 36.364 0.00 0.00 0.00 3.56
1181 1187 5.913137 ATCCTTTGAACGAATTGGCATTA 57.087 34.783 0.00 0.00 0.00 1.90
1182 1188 5.309323 TCCTTTGAACGAATTGGCATTAG 57.691 39.130 0.00 0.00 0.00 1.73
1183 1189 5.007034 TCCTTTGAACGAATTGGCATTAGA 58.993 37.500 0.00 0.00 0.00 2.10
1184 1190 5.095490 CCTTTGAACGAATTGGCATTAGAC 58.905 41.667 0.00 0.00 0.00 2.59
1185 1191 5.106157 CCTTTGAACGAATTGGCATTAGACT 60.106 40.000 0.00 0.00 0.00 3.24
1186 1192 5.957842 TTGAACGAATTGGCATTAGACTT 57.042 34.783 0.00 0.00 0.00 3.01
1187 1193 7.361713 CCTTTGAACGAATTGGCATTAGACTTA 60.362 37.037 0.00 0.00 0.00 2.24
1188 1194 6.417191 TGAACGAATTGGCATTAGACTTAC 57.583 37.500 0.00 0.00 0.00 2.34
1189 1195 6.170506 TGAACGAATTGGCATTAGACTTACT 58.829 36.000 0.00 0.00 0.00 2.24
1190 1196 7.324935 TGAACGAATTGGCATTAGACTTACTA 58.675 34.615 0.00 0.00 0.00 1.82
1191 1197 7.277098 TGAACGAATTGGCATTAGACTTACTAC 59.723 37.037 0.00 0.00 0.00 2.73
1192 1198 6.875076 ACGAATTGGCATTAGACTTACTACT 58.125 36.000 0.00 0.00 0.00 2.57
1193 1199 7.328737 ACGAATTGGCATTAGACTTACTACTT 58.671 34.615 0.00 0.00 0.00 2.24
1194 1200 7.277981 ACGAATTGGCATTAGACTTACTACTTG 59.722 37.037 0.00 0.00 0.00 3.16
1195 1201 7.254455 CGAATTGGCATTAGACTTACTACTTGG 60.254 40.741 0.00 0.00 0.00 3.61
1196 1202 5.353394 TGGCATTAGACTTACTACTTGGG 57.647 43.478 0.00 0.00 0.00 4.12
1197 1203 4.127907 GGCATTAGACTTACTACTTGGGC 58.872 47.826 0.00 0.00 0.00 5.36
1198 1204 4.141688 GGCATTAGACTTACTACTTGGGCT 60.142 45.833 0.00 0.00 0.00 5.19
1199 1205 5.070047 GGCATTAGACTTACTACTTGGGCTA 59.930 44.000 0.00 0.00 0.00 3.93
1200 1206 6.239629 GGCATTAGACTTACTACTTGGGCTAT 60.240 42.308 0.00 0.00 0.00 2.97
1201 1207 7.217906 GCATTAGACTTACTACTTGGGCTATT 58.782 38.462 0.00 0.00 0.00 1.73
1202 1208 7.171678 GCATTAGACTTACTACTTGGGCTATTG 59.828 40.741 0.00 0.00 0.00 1.90
1203 1209 7.729124 TTAGACTTACTACTTGGGCTATTGT 57.271 36.000 0.00 0.00 0.00 2.71
1204 1210 5.978814 AGACTTACTACTTGGGCTATTGTG 58.021 41.667 0.00 0.00 0.00 3.33
1205 1211 5.099042 ACTTACTACTTGGGCTATTGTGG 57.901 43.478 0.00 0.00 0.00 4.17
1206 1212 4.781087 ACTTACTACTTGGGCTATTGTGGA 59.219 41.667 0.00 0.00 0.00 4.02
1207 1213 3.629142 ACTACTTGGGCTATTGTGGAC 57.371 47.619 0.00 0.00 0.00 4.02
1208 1214 2.238898 ACTACTTGGGCTATTGTGGACC 59.761 50.000 0.00 0.00 0.00 4.46
1209 1215 1.372501 ACTTGGGCTATTGTGGACCT 58.627 50.000 0.00 0.00 0.00 3.85
1210 1216 1.282157 ACTTGGGCTATTGTGGACCTC 59.718 52.381 0.00 0.00 0.00 3.85
1211 1217 0.623723 TTGGGCTATTGTGGACCTCC 59.376 55.000 0.00 0.00 0.00 4.30
1212 1218 1.146263 GGGCTATTGTGGACCTCCG 59.854 63.158 0.00 0.00 39.43 4.63
1213 1219 1.623542 GGGCTATTGTGGACCTCCGT 61.624 60.000 0.00 0.00 39.43 4.69
1214 1220 0.179081 GGCTATTGTGGACCTCCGTC 60.179 60.000 0.00 0.00 39.43 4.79
1215 1221 0.824759 GCTATTGTGGACCTCCGTCT 59.175 55.000 0.00 0.00 39.15 4.18
1216 1222 1.471676 GCTATTGTGGACCTCCGTCTG 60.472 57.143 0.00 0.00 39.15 3.51
1217 1223 1.825474 CTATTGTGGACCTCCGTCTGT 59.175 52.381 0.00 0.00 39.15 3.41
1218 1224 0.321671 ATTGTGGACCTCCGTCTGTG 59.678 55.000 0.00 0.00 39.15 3.66
1219 1225 1.046472 TTGTGGACCTCCGTCTGTGT 61.046 55.000 0.00 0.00 39.15 3.72
1220 1226 1.006102 GTGGACCTCCGTCTGTGTG 60.006 63.158 0.00 0.00 39.15 3.82
1221 1227 1.456892 TGGACCTCCGTCTGTGTGT 60.457 57.895 0.00 0.00 39.15 3.72
1222 1228 1.006102 GGACCTCCGTCTGTGTGTG 60.006 63.158 0.00 0.00 39.15 3.82
1223 1229 1.740285 GACCTCCGTCTGTGTGTGT 59.260 57.895 0.00 0.00 35.99 3.72
1224 1230 0.597637 GACCTCCGTCTGTGTGTGTG 60.598 60.000 0.00 0.00 35.99 3.82
1225 1231 1.327690 ACCTCCGTCTGTGTGTGTGT 61.328 55.000 0.00 0.00 0.00 3.72
1226 1232 0.875908 CCTCCGTCTGTGTGTGTGTG 60.876 60.000 0.00 0.00 0.00 3.82
1227 1233 0.179111 CTCCGTCTGTGTGTGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
1228 1234 0.459411 TCCGTCTGTGTGTGTGTGTG 60.459 55.000 0.00 0.00 0.00 3.82
1229 1235 1.348250 CGTCTGTGTGTGTGTGTGC 59.652 57.895 0.00 0.00 0.00 4.57
1230 1236 1.348250 GTCTGTGTGTGTGTGTGCG 59.652 57.895 0.00 0.00 0.00 5.34
1231 1237 1.813337 TCTGTGTGTGTGTGTGCGG 60.813 57.895 0.00 0.00 0.00 5.69
1232 1238 2.046796 TGTGTGTGTGTGTGCGGT 60.047 55.556 0.00 0.00 0.00 5.68
1233 1239 2.308450 CTGTGTGTGTGTGTGCGGTG 62.308 60.000 0.00 0.00 0.00 4.94
1234 1240 2.046796 TGTGTGTGTGTGCGGTGT 60.047 55.556 0.00 0.00 0.00 4.16
1235 1241 2.394563 TGTGTGTGTGTGCGGTGTG 61.395 57.895 0.00 0.00 0.00 3.82
1236 1242 2.046796 TGTGTGTGTGCGGTGTGT 60.047 55.556 0.00 0.00 0.00 3.72
1237 1243 1.672682 TGTGTGTGTGCGGTGTGTT 60.673 52.632 0.00 0.00 0.00 3.32
1238 1244 1.226267 GTGTGTGTGCGGTGTGTTG 60.226 57.895 0.00 0.00 0.00 3.33
1239 1245 2.402572 TGTGTGTGCGGTGTGTTGG 61.403 57.895 0.00 0.00 0.00 3.77
1240 1246 2.109739 GTGTGTGCGGTGTGTTGGA 61.110 57.895 0.00 0.00 0.00 3.53
1241 1247 2.109739 TGTGTGCGGTGTGTTGGAC 61.110 57.895 0.00 0.00 0.00 4.02
1242 1248 1.817941 GTGTGCGGTGTGTTGGACT 60.818 57.895 0.00 0.00 0.00 3.85
1243 1249 0.531090 GTGTGCGGTGTGTTGGACTA 60.531 55.000 0.00 0.00 0.00 2.59
1244 1250 0.394938 TGTGCGGTGTGTTGGACTAT 59.605 50.000 0.00 0.00 0.00 2.12
1245 1251 0.796312 GTGCGGTGTGTTGGACTATG 59.204 55.000 0.00 0.00 0.00 2.23
1246 1252 0.394938 TGCGGTGTGTTGGACTATGT 59.605 50.000 0.00 0.00 0.00 2.29
1247 1253 1.202710 TGCGGTGTGTTGGACTATGTT 60.203 47.619 0.00 0.00 0.00 2.71
1248 1254 1.196808 GCGGTGTGTTGGACTATGTTG 59.803 52.381 0.00 0.00 0.00 3.33
1249 1255 1.804151 CGGTGTGTTGGACTATGTTGG 59.196 52.381 0.00 0.00 0.00 3.77
1250 1256 2.549134 CGGTGTGTTGGACTATGTTGGA 60.549 50.000 0.00 0.00 0.00 3.53
1251 1257 3.686016 GGTGTGTTGGACTATGTTGGAT 58.314 45.455 0.00 0.00 0.00 3.41
1252 1258 3.440173 GGTGTGTTGGACTATGTTGGATG 59.560 47.826 0.00 0.00 0.00 3.51
1253 1259 4.072131 GTGTGTTGGACTATGTTGGATGT 58.928 43.478 0.00 0.00 0.00 3.06
1254 1260 4.518970 GTGTGTTGGACTATGTTGGATGTT 59.481 41.667 0.00 0.00 0.00 2.71
1255 1261 5.009610 GTGTGTTGGACTATGTTGGATGTTT 59.990 40.000 0.00 0.00 0.00 2.83
1256 1262 5.009510 TGTGTTGGACTATGTTGGATGTTTG 59.990 40.000 0.00 0.00 0.00 2.93
1257 1263 5.009610 GTGTTGGACTATGTTGGATGTTTGT 59.990 40.000 0.00 0.00 0.00 2.83
1258 1264 5.596361 TGTTGGACTATGTTGGATGTTTGTT 59.404 36.000 0.00 0.00 0.00 2.83
1259 1265 5.703978 TGGACTATGTTGGATGTTTGTTG 57.296 39.130 0.00 0.00 0.00 3.33
1260 1266 5.136828 TGGACTATGTTGGATGTTTGTTGT 58.863 37.500 0.00 0.00 0.00 3.32
1261 1267 5.009510 TGGACTATGTTGGATGTTTGTTGTG 59.990 40.000 0.00 0.00 0.00 3.33
1262 1268 4.870363 ACTATGTTGGATGTTTGTTGTGC 58.130 39.130 0.00 0.00 0.00 4.57
1263 1269 2.200792 TGTTGGATGTTTGTTGTGCG 57.799 45.000 0.00 0.00 0.00 5.34
1264 1270 1.202348 TGTTGGATGTTTGTTGTGCGG 60.202 47.619 0.00 0.00 0.00 5.69
1265 1271 1.107114 TTGGATGTTTGTTGTGCGGT 58.893 45.000 0.00 0.00 0.00 5.68
1266 1272 1.107114 TGGATGTTTGTTGTGCGGTT 58.893 45.000 0.00 0.00 0.00 4.44
1267 1273 1.202348 TGGATGTTTGTTGTGCGGTTG 60.202 47.619 0.00 0.00 0.00 3.77
1268 1274 1.486439 GATGTTTGTTGTGCGGTTGG 58.514 50.000 0.00 0.00 0.00 3.77
1269 1275 0.529555 ATGTTTGTTGTGCGGTTGGC 60.530 50.000 0.00 0.00 43.96 4.52
1270 1276 1.140804 GTTTGTTGTGCGGTTGGCT 59.859 52.632 0.00 0.00 44.05 4.75
1271 1277 0.459411 GTTTGTTGTGCGGTTGGCTT 60.459 50.000 0.00 0.00 44.05 4.35
1272 1278 0.247736 TTTGTTGTGCGGTTGGCTTT 59.752 45.000 0.00 0.00 44.05 3.51
1273 1279 1.103803 TTGTTGTGCGGTTGGCTTTA 58.896 45.000 0.00 0.00 44.05 1.85
1274 1280 1.323412 TGTTGTGCGGTTGGCTTTAT 58.677 45.000 0.00 0.00 44.05 1.40
1275 1281 2.505405 TGTTGTGCGGTTGGCTTTATA 58.495 42.857 0.00 0.00 44.05 0.98
1276 1282 2.885266 TGTTGTGCGGTTGGCTTTATAA 59.115 40.909 0.00 0.00 44.05 0.98
1277 1283 3.508012 TGTTGTGCGGTTGGCTTTATAAT 59.492 39.130 0.00 0.00 44.05 1.28
1278 1284 4.700692 TGTTGTGCGGTTGGCTTTATAATA 59.299 37.500 0.00 0.00 44.05 0.98
1279 1285 5.358442 TGTTGTGCGGTTGGCTTTATAATAT 59.642 36.000 0.00 0.00 44.05 1.28
1280 1286 6.542735 TGTTGTGCGGTTGGCTTTATAATATA 59.457 34.615 0.00 0.00 44.05 0.86
1281 1287 7.067129 TGTTGTGCGGTTGGCTTTATAATATAA 59.933 33.333 0.00 0.00 44.05 0.98
1282 1288 7.569639 TGTGCGGTTGGCTTTATAATATAAA 57.430 32.000 5.46 5.46 44.05 1.40
1283 1289 7.644490 TGTGCGGTTGGCTTTATAATATAAAG 58.356 34.615 22.11 22.11 44.05 1.85
1290 1296 4.905269 GCTTTATAATATAAAGCGGGGCG 58.095 43.478 30.20 10.34 46.31 6.13
1291 1297 4.632688 GCTTTATAATATAAAGCGGGGCGA 59.367 41.667 30.20 0.05 46.31 5.54
1292 1298 5.122711 GCTTTATAATATAAAGCGGGGCGAA 59.877 40.000 30.20 0.00 46.31 4.70
1293 1299 6.348704 GCTTTATAATATAAAGCGGGGCGAAA 60.349 38.462 30.20 0.57 46.31 3.46
1294 1300 6.730960 TTATAATATAAAGCGGGGCGAAAG 57.269 37.500 0.00 0.00 0.00 2.62
1311 1317 3.917985 CGAAAGCCTTTTTCGGTAATTGG 59.082 43.478 12.72 0.00 45.17 3.16
1383 1389 5.022282 TCAGGCATTTCAATATCACGAGA 57.978 39.130 0.00 0.00 0.00 4.04
1573 1588 0.808125 GCCACACACAATAATCGCCA 59.192 50.000 0.00 0.00 0.00 5.69
1574 1589 1.405105 GCCACACACAATAATCGCCAT 59.595 47.619 0.00 0.00 0.00 4.40
1653 1672 0.037605 CTTGCTTCCCGGTAGTTCGT 60.038 55.000 0.00 0.00 0.00 3.85
1659 1678 1.392589 TCCCGGTAGTTCGTATGGAC 58.607 55.000 0.00 0.00 0.00 4.02
1660 1679 1.064463 TCCCGGTAGTTCGTATGGACT 60.064 52.381 0.00 0.50 0.00 3.85
1796 1815 4.724074 TGTTTCAGATCATGCCCATTTC 57.276 40.909 0.00 0.00 0.00 2.17
1807 1826 8.582437 AGATCATGCCCATTTCTATGTATTTTG 58.418 33.333 0.00 0.00 0.00 2.44
1865 1884 8.240682 TCTTGTATATTTGTGTGTTTATGTGGC 58.759 33.333 0.00 0.00 0.00 5.01
1886 1905 4.459606 GCATGTTGCATTTTGTCACATTG 58.540 39.130 0.00 0.00 44.26 2.82
2108 2127 3.269178 GCCAGAGTGAAGAGGAAATCAG 58.731 50.000 0.00 0.00 0.00 2.90
2113 2132 5.407995 CAGAGTGAAGAGGAAATCAGTGAAC 59.592 44.000 0.00 0.00 29.56 3.18
2173 2192 4.044336 CAGGAGACTATGAGACTGCAAG 57.956 50.000 0.00 0.00 40.21 4.01
2174 2193 2.430332 AGGAGACTATGAGACTGCAAGC 59.570 50.000 0.00 0.00 40.61 4.01
2238 2257 3.591023 TGAAGATGTGAAACGGCGATTA 58.409 40.909 16.62 0.00 42.39 1.75
2412 2431 9.851686 ATAAGCTATTTCTACATGTTTGGATCA 57.148 29.630 2.30 0.00 0.00 2.92
2422 2441 8.046107 TCTACATGTTTGGATCACATATGTTGA 58.954 33.333 5.37 7.94 32.88 3.18
2423 2442 7.465353 ACATGTTTGGATCACATATGTTGAA 57.535 32.000 5.37 0.00 32.88 2.69
2615 2659 6.201615 TGCATGAATTAATCTCTAAGCTCACG 59.798 38.462 0.00 0.00 0.00 4.35
2616 2660 6.347240 GCATGAATTAATCTCTAAGCTCACGG 60.347 42.308 0.00 0.00 0.00 4.94
2617 2661 6.465439 TGAATTAATCTCTAAGCTCACGGA 57.535 37.500 0.00 0.00 0.00 4.69
2631 2675 3.119316 GCTCACGGATTCTCTTTCTCTCA 60.119 47.826 0.00 0.00 0.00 3.27
2672 2716 1.754803 CTCATTTCCCATGCATGCACT 59.245 47.619 25.37 9.74 0.00 4.40
2673 2717 1.478916 TCATTTCCCATGCATGCACTG 59.521 47.619 25.37 20.62 0.00 3.66
2674 2718 1.206132 CATTTCCCATGCATGCACTGT 59.794 47.619 25.37 4.03 0.00 3.55
2675 2719 1.340088 TTTCCCATGCATGCACTGTT 58.660 45.000 25.37 3.57 0.00 3.16
2676 2720 1.340088 TTCCCATGCATGCACTGTTT 58.660 45.000 25.37 3.10 0.00 2.83
2677 2721 0.604073 TCCCATGCATGCACTGTTTG 59.396 50.000 25.37 16.85 0.00 2.93
2763 2826 8.090788 AGAAGTAGTTCTGGCATTTATAGGAA 57.909 34.615 12.13 0.00 41.78 3.36
2771 2834 6.489603 TCTGGCATTTATAGGAAAAGTGGAA 58.510 36.000 0.00 0.00 0.00 3.53
2926 2989 7.928307 ATCAAGTGTCAATTTACATAGTGCT 57.072 32.000 0.00 0.00 0.00 4.40
2963 3026 3.500982 CAATAATGTTGAGCCGTTGTGG 58.499 45.455 0.00 0.00 42.50 4.17
3022 3085 4.236935 CAAAACAATCATAGTGGTGGCAC 58.763 43.478 9.70 9.70 0.00 5.01
3023 3086 3.439857 AACAATCATAGTGGTGGCACT 57.560 42.857 18.45 0.00 39.08 4.40
3024 3087 2.715046 ACAATCATAGTGGTGGCACTG 58.285 47.619 18.45 7.55 36.68 3.66
3027 3090 0.324614 TCATAGTGGTGGCACTGTGG 59.675 55.000 18.45 3.12 42.25 4.17
3055 3118 2.027100 GCCTTTCAGTTACCCTAGTGCT 60.027 50.000 0.00 0.00 0.00 4.40
3481 3544 2.438868 TTCTGTGTCCGTCTGTGATG 57.561 50.000 0.00 0.00 0.00 3.07
3482 3545 1.328279 TCTGTGTCCGTCTGTGATGT 58.672 50.000 0.00 0.00 0.00 3.06
3483 3546 1.269723 TCTGTGTCCGTCTGTGATGTC 59.730 52.381 0.00 0.00 0.00 3.06
3484 3547 0.317160 TGTGTCCGTCTGTGATGTCC 59.683 55.000 0.00 0.00 0.00 4.02
3485 3548 0.317160 GTGTCCGTCTGTGATGTCCA 59.683 55.000 0.00 0.00 0.00 4.02
3486 3549 1.044611 TGTCCGTCTGTGATGTCCAA 58.955 50.000 0.00 0.00 0.00 3.53
3487 3550 1.270094 TGTCCGTCTGTGATGTCCAAC 60.270 52.381 0.00 0.00 0.00 3.77
3488 3551 1.044611 TCCGTCTGTGATGTCCAACA 58.955 50.000 0.00 0.00 0.00 3.33
3489 3552 1.623311 TCCGTCTGTGATGTCCAACAT 59.377 47.619 0.00 0.00 42.43 2.71
3490 3553 1.733912 CCGTCTGTGATGTCCAACATG 59.266 52.381 0.00 0.00 39.27 3.21
3491 3554 1.733912 CGTCTGTGATGTCCAACATGG 59.266 52.381 0.00 0.00 39.27 3.66
3492 3555 2.783135 GTCTGTGATGTCCAACATGGT 58.217 47.619 0.00 0.00 39.27 3.55
3493 3556 2.485426 GTCTGTGATGTCCAACATGGTG 59.515 50.000 2.91 2.91 39.27 4.17
3494 3557 1.814394 CTGTGATGTCCAACATGGTGG 59.186 52.381 24.77 24.77 39.27 4.61
3495 3558 1.144708 TGTGATGTCCAACATGGTGGT 59.855 47.619 28.83 10.67 39.27 4.16
3496 3559 1.541147 GTGATGTCCAACATGGTGGTG 59.459 52.381 28.83 5.08 39.27 4.17
3497 3560 1.423161 TGATGTCCAACATGGTGGTGA 59.577 47.619 28.83 16.86 37.20 4.02
3498 3561 2.086869 GATGTCCAACATGGTGGTGAG 58.913 52.381 28.83 3.87 37.20 3.51
3499 3562 0.110295 TGTCCAACATGGTGGTGAGG 59.890 55.000 28.83 3.38 37.20 3.86
3500 3563 1.074775 TCCAACATGGTGGTGAGGC 59.925 57.895 28.83 0.00 37.20 4.70
3501 3564 2.334946 CCAACATGGTGGTGAGGCG 61.335 63.158 22.48 0.00 37.20 5.52
3502 3565 1.302431 CAACATGGTGGTGAGGCGA 60.302 57.895 1.63 0.00 37.20 5.54
3503 3566 0.888736 CAACATGGTGGTGAGGCGAA 60.889 55.000 1.63 0.00 37.20 4.70
3504 3567 0.889186 AACATGGTGGTGAGGCGAAC 60.889 55.000 0.00 0.00 0.00 3.95
3505 3568 1.003355 CATGGTGGTGAGGCGAACT 60.003 57.895 0.00 0.00 0.00 3.01
3506 3569 1.003355 ATGGTGGTGAGGCGAACTG 60.003 57.895 0.00 0.00 0.00 3.16
3507 3570 1.768684 ATGGTGGTGAGGCGAACTGT 61.769 55.000 0.00 0.00 0.00 3.55
3508 3571 1.961277 GGTGGTGAGGCGAACTGTG 60.961 63.158 0.00 0.00 0.00 3.66
3509 3572 1.227556 GTGGTGAGGCGAACTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
3510 3573 0.814010 GTGGTGAGGCGAACTGTGTT 60.814 55.000 0.00 0.00 0.00 3.32
3511 3574 0.753867 TGGTGAGGCGAACTGTGTTA 59.246 50.000 0.00 0.00 0.00 2.41
3512 3575 1.346395 TGGTGAGGCGAACTGTGTTAT 59.654 47.619 0.00 0.00 0.00 1.89
3513 3576 2.563620 TGGTGAGGCGAACTGTGTTATA 59.436 45.455 0.00 0.00 0.00 0.98
3514 3577 3.187700 GGTGAGGCGAACTGTGTTATAG 58.812 50.000 0.00 0.00 0.00 1.31
3515 3578 3.368116 GGTGAGGCGAACTGTGTTATAGT 60.368 47.826 0.00 0.00 0.00 2.12
3516 3579 4.142315 GGTGAGGCGAACTGTGTTATAGTA 60.142 45.833 0.00 0.00 0.00 1.82
3517 3580 5.451520 GGTGAGGCGAACTGTGTTATAGTAT 60.452 44.000 0.00 0.00 0.00 2.12
3518 3581 5.459107 GTGAGGCGAACTGTGTTATAGTATG 59.541 44.000 0.00 0.00 0.00 2.39
3519 3582 4.369182 AGGCGAACTGTGTTATAGTATGC 58.631 43.478 0.00 0.00 0.00 3.14
3520 3583 4.099573 AGGCGAACTGTGTTATAGTATGCT 59.900 41.667 0.00 0.00 32.34 3.79
3521 3584 4.444720 GGCGAACTGTGTTATAGTATGCTC 59.555 45.833 0.00 0.00 32.34 4.26
3522 3585 5.041287 GCGAACTGTGTTATAGTATGCTCA 58.959 41.667 0.00 0.00 0.00 4.26
3523 3586 5.051641 GCGAACTGTGTTATAGTATGCTCAC 60.052 44.000 0.00 0.91 0.00 3.51
3524 3587 6.033966 CGAACTGTGTTATAGTATGCTCACA 58.966 40.000 12.69 12.69 35.15 3.58
3525 3588 6.697455 CGAACTGTGTTATAGTATGCTCACAT 59.303 38.462 13.30 4.73 40.49 3.21
3526 3589 7.096436 CGAACTGTGTTATAGTATGCTCACATC 60.096 40.741 13.30 10.01 37.74 3.06
3527 3590 7.112452 ACTGTGTTATAGTATGCTCACATCA 57.888 36.000 13.30 0.79 37.74 3.07
3528 3591 7.730084 ACTGTGTTATAGTATGCTCACATCAT 58.270 34.615 13.30 0.00 37.74 2.45
3529 3592 7.654923 ACTGTGTTATAGTATGCTCACATCATG 59.345 37.037 13.30 0.00 37.74 3.07
3530 3593 7.725251 TGTGTTATAGTATGCTCACATCATGA 58.275 34.615 0.00 0.00 37.74 3.07
3531 3594 8.370182 TGTGTTATAGTATGCTCACATCATGAT 58.630 33.333 1.18 1.18 36.48 2.45
3532 3595 9.860898 GTGTTATAGTATGCTCACATCATGATA 57.139 33.333 8.15 0.00 36.48 2.15
3557 3620 5.620738 TCTGCAGTGCTATAGGAAATTCT 57.379 39.130 17.60 0.00 0.00 2.40
3563 3626 5.757320 CAGTGCTATAGGAAATTCTGGTCTG 59.243 44.000 1.04 0.00 0.00 3.51
3572 3635 6.986250 AGGAAATTCTGGTCTGACATTTTTC 58.014 36.000 10.38 10.18 0.00 2.29
3578 3641 6.773976 TCTGGTCTGACATTTTTCTTTTGT 57.226 33.333 10.38 0.00 0.00 2.83
3694 3757 8.987890 ACACAACAAGGTAAAATTCATAATTGC 58.012 29.630 0.00 0.00 0.00 3.56
3809 3959 7.466746 AGGAATTAATTGCTTGAAACTGCTA 57.533 32.000 15.75 0.00 34.65 3.49
3878 4115 8.918202 TCTGTAATTCACAATGTAAGTCCTTT 57.082 30.769 0.00 0.00 36.48 3.11
3934 4171 7.308435 GTTTGACCATCTGTAAAGAAGGAATG 58.692 38.462 11.24 0.00 31.68 2.67
3943 4180 7.099764 TCTGTAAAGAAGGAATGACTGTCATC 58.900 38.462 22.47 15.30 35.76 2.92
4148 4386 6.098838 ACTGAATACTGATTGCTCATCTACCA 59.901 38.462 0.00 0.00 32.34 3.25
4159 4397 4.901250 TGCTCATCTACCATCAATCCACTA 59.099 41.667 0.00 0.00 0.00 2.74
4254 4492 8.055181 ACCTTCTTATCCTTTATTGCTGAATCA 58.945 33.333 0.00 0.00 0.00 2.57
4288 4526 3.742433 TTAGCCCCAACAACACAAATG 57.258 42.857 0.00 0.00 0.00 2.32
4456 4694 2.292323 ACGAGGGAAGTATCCTTGGTCT 60.292 50.000 0.00 0.00 39.10 3.85
4481 4719 1.204704 TCCCTTCACGTGCTATGAGTG 59.795 52.381 11.67 0.00 37.24 3.51
4633 4871 1.007118 CACCAAGCCCCCTTTAGGAAT 59.993 52.381 0.00 0.00 38.24 3.01
4687 4925 3.423539 ACAATGGCAGCAAGAGAACTA 57.576 42.857 0.00 0.00 0.00 2.24
4986 5224 9.915629 CAGACTACTGTTTGTTAACTAGATTCT 57.084 33.333 7.22 0.00 39.11 2.40
4987 5225 9.915629 AGACTACTGTTTGTTAACTAGATTCTG 57.084 33.333 7.22 0.00 35.24 3.02
5023 5261 8.444715 GTGATTTTGCAGCATTTGATATTTCAA 58.555 29.630 0.00 0.00 40.09 2.69
5098 5337 4.581824 AGCAATGTGGTGGCTATTTCTATG 59.418 41.667 0.00 0.00 35.82 2.23
5149 5388 6.378564 CCTATGTCCGATACCACTGAGATATT 59.621 42.308 0.00 0.00 0.00 1.28
5186 5425 9.263446 AGTCCTGTACTTCTTGTTGGTAATATA 57.737 33.333 0.00 0.00 33.35 0.86
5206 5445 2.900716 TTTTGCCTTTACCCAACTGC 57.099 45.000 0.00 0.00 0.00 4.40
5207 5446 1.781786 TTTGCCTTTACCCAACTGCA 58.218 45.000 0.00 0.00 0.00 4.41
5208 5447 1.327303 TTGCCTTTACCCAACTGCAG 58.673 50.000 13.48 13.48 0.00 4.41
5209 5448 0.184933 TGCCTTTACCCAACTGCAGT 59.815 50.000 15.25 15.25 0.00 4.40
5431 5672 3.595173 GAAGAAGAGAGGTCCAAGCTTC 58.405 50.000 0.00 8.70 36.19 3.86
5436 5677 2.975489 AGAGAGGTCCAAGCTTCTCAAA 59.025 45.455 13.59 0.00 0.00 2.69
5533 5774 1.447643 CAGATAGCGGTGAAGGGGG 59.552 63.158 0.00 0.00 0.00 5.40
5547 5788 1.978617 GGGGGTCACCGACGAGTTA 60.979 63.158 0.00 0.00 41.60 2.24
5552 5793 1.203052 GGTCACCGACGAGTTAATCCA 59.797 52.381 0.00 0.00 32.65 3.41
5842 6086 3.142174 GCTTTGCTATATCCTGACACCC 58.858 50.000 0.00 0.00 0.00 4.61
5867 6111 3.734902 GCGGAATTTTGGAGGCTTACATG 60.735 47.826 0.00 0.00 0.00 3.21
5868 6112 3.443681 CGGAATTTTGGAGGCTTACATGT 59.556 43.478 2.69 2.69 0.00 3.21
5869 6113 4.638421 CGGAATTTTGGAGGCTTACATGTA 59.362 41.667 0.08 0.08 0.00 2.29
5870 6114 5.448632 CGGAATTTTGGAGGCTTACATGTAC 60.449 44.000 4.68 0.00 0.00 2.90
5871 6115 5.652452 GGAATTTTGGAGGCTTACATGTACT 59.348 40.000 4.68 0.00 0.00 2.73
5872 6116 6.183360 GGAATTTTGGAGGCTTACATGTACTC 60.183 42.308 4.68 9.06 0.00 2.59
5873 6117 3.906720 TTGGAGGCTTACATGTACTCC 57.093 47.619 24.36 24.36 46.14 3.85
5874 6118 2.116238 TGGAGGCTTACATGTACTCCC 58.884 52.381 26.46 17.78 45.53 4.30
5875 6119 2.292918 TGGAGGCTTACATGTACTCCCT 60.293 50.000 26.46 21.03 45.53 4.20
5876 6120 2.365941 GGAGGCTTACATGTACTCCCTC 59.634 54.545 24.36 24.36 41.41 4.30
5877 6121 2.365941 GAGGCTTACATGTACTCCCTCC 59.634 54.545 23.06 12.20 33.08 4.30
5878 6122 1.068741 GGCTTACATGTACTCCCTCCG 59.931 57.143 4.68 0.00 0.00 4.63
5879 6123 1.755380 GCTTACATGTACTCCCTCCGT 59.245 52.381 4.68 0.00 0.00 4.69
5880 6124 2.167900 GCTTACATGTACTCCCTCCGTT 59.832 50.000 4.68 0.00 0.00 4.44
5881 6125 3.737355 GCTTACATGTACTCCCTCCGTTC 60.737 52.174 4.68 0.00 0.00 3.95
5882 6126 2.233305 ACATGTACTCCCTCCGTTCT 57.767 50.000 0.00 0.00 0.00 3.01
5883 6127 1.825474 ACATGTACTCCCTCCGTTCTG 59.175 52.381 0.00 0.00 0.00 3.02
5884 6128 2.100197 CATGTACTCCCTCCGTTCTGA 58.900 52.381 0.00 0.00 0.00 3.27
5885 6129 2.297698 TGTACTCCCTCCGTTCTGAA 57.702 50.000 0.00 0.00 0.00 3.02
5886 6130 2.816411 TGTACTCCCTCCGTTCTGAAT 58.184 47.619 0.00 0.00 0.00 2.57
5887 6131 3.170717 TGTACTCCCTCCGTTCTGAATT 58.829 45.455 0.00 0.00 0.00 2.17
5888 6132 4.346730 TGTACTCCCTCCGTTCTGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
5889 6133 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
5890 6134 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
5891 6135 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
5892 6136 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
5893 6137 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
5894 6138 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
5895 6139 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
5896 6140 4.865365 CCTCCGTTCTGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
5897 6141 5.462530 TCCGTTCTGAATTACTTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
5898 6142 5.470368 TCCGTTCTGAATTACTTGTCTCAG 58.530 41.667 0.00 0.00 37.28 3.35
5899 6143 5.243060 TCCGTTCTGAATTACTTGTCTCAGA 59.757 40.000 0.00 0.00 41.89 3.27
5904 6148 7.912056 TCTGAATTACTTGTCTCAGAAATGG 57.088 36.000 0.00 0.00 40.94 3.16
5905 6149 7.679783 TCTGAATTACTTGTCTCAGAAATGGA 58.320 34.615 0.00 0.00 40.94 3.41
5906 6150 8.324306 TCTGAATTACTTGTCTCAGAAATGGAT 58.676 33.333 0.00 0.00 40.94 3.41
5907 6151 8.272545 TGAATTACTTGTCTCAGAAATGGATG 57.727 34.615 0.00 0.00 0.00 3.51
5908 6152 7.884877 TGAATTACTTGTCTCAGAAATGGATGT 59.115 33.333 0.00 0.00 0.00 3.06
5909 6153 9.383519 GAATTACTTGTCTCAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
5910 6154 9.911788 AATTACTTGTCTCAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
5911 6155 9.911788 ATTACTTGTCTCAGAAATGGATGTATT 57.088 29.630 0.00 0.00 0.00 1.89
5912 6156 9.739276 TTACTTGTCTCAGAAATGGATGTATTT 57.261 29.630 0.00 0.00 33.19 1.40
5914 6158 9.388506 ACTTGTCTCAGAAATGGATGTATTTAG 57.611 33.333 0.00 0.00 30.78 1.85
5915 6159 9.605275 CTTGTCTCAGAAATGGATGTATTTAGA 57.395 33.333 0.00 0.00 30.78 2.10
5916 6160 9.958180 TTGTCTCAGAAATGGATGTATTTAGAA 57.042 29.630 0.00 0.00 30.78 2.10
5917 6161 9.383519 TGTCTCAGAAATGGATGTATTTAGAAC 57.616 33.333 0.00 0.00 30.78 3.01
5918 6162 9.606631 GTCTCAGAAATGGATGTATTTAGAACT 57.393 33.333 0.00 0.00 30.78 3.01
5948 6192 7.649370 ACATCTAGATACATTCATTTCTGCG 57.351 36.000 4.54 0.00 0.00 5.18
5949 6193 7.436933 ACATCTAGATACATTCATTTCTGCGA 58.563 34.615 4.54 0.00 0.00 5.10
5950 6194 7.383572 ACATCTAGATACATTCATTTCTGCGAC 59.616 37.037 4.54 0.00 0.00 5.19
5951 6195 6.805713 TCTAGATACATTCATTTCTGCGACA 58.194 36.000 0.00 0.00 0.00 4.35
5952 6196 7.264947 TCTAGATACATTCATTTCTGCGACAA 58.735 34.615 0.00 0.00 0.00 3.18
5953 6197 6.111768 AGATACATTCATTTCTGCGACAAC 57.888 37.500 0.00 0.00 0.00 3.32
5954 6198 5.877012 AGATACATTCATTTCTGCGACAACT 59.123 36.000 0.00 0.00 0.00 3.16
5955 6199 7.041721 AGATACATTCATTTCTGCGACAACTA 58.958 34.615 0.00 0.00 0.00 2.24
5956 6200 5.940192 ACATTCATTTCTGCGACAACTAA 57.060 34.783 0.00 0.00 0.00 2.24
5957 6201 6.500684 ACATTCATTTCTGCGACAACTAAT 57.499 33.333 0.00 0.00 0.00 1.73
5958 6202 6.913170 ACATTCATTTCTGCGACAACTAATT 58.087 32.000 0.00 0.00 0.00 1.40
5959 6203 7.023575 ACATTCATTTCTGCGACAACTAATTC 58.976 34.615 0.00 0.00 0.00 2.17
5960 6204 5.545658 TCATTTCTGCGACAACTAATTCC 57.454 39.130 0.00 0.00 0.00 3.01
5961 6205 4.092821 TCATTTCTGCGACAACTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
5962 6206 3.306917 TTCTGCGACAACTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
5963 6207 3.306917 TCTGCGACAACTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
5964 6208 3.857052 TCTGCGACAACTAATTCCGAAT 58.143 40.909 0.00 0.00 0.00 3.34
5965 6209 3.616821 TCTGCGACAACTAATTCCGAATG 59.383 43.478 0.00 0.00 0.00 2.67
5966 6210 2.675844 TGCGACAACTAATTCCGAATGG 59.324 45.455 0.00 0.00 0.00 3.16
5967 6211 2.933906 GCGACAACTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
6060 6304 3.494398 CGCATATACTAGCCTTTGGTGGT 60.494 47.826 0.00 0.00 37.46 4.16
6123 6368 4.892934 TGTAACTTTGATTGGGCTCTTTGT 59.107 37.500 0.00 0.00 0.00 2.83
6176 6421 2.223089 CCGCCCCTTACGAAATTAAACG 60.223 50.000 0.00 0.00 0.00 3.60
6241 6486 1.952621 TTCGTGAAGGGGAAGATCCT 58.047 50.000 0.00 0.00 36.57 3.24
6275 6521 2.753966 GCGATGCACACAGCCGATT 61.754 57.895 0.00 0.00 44.83 3.34
6277 6523 1.086067 CGATGCACACAGCCGATTCT 61.086 55.000 0.00 0.00 44.83 2.40
6298 6551 6.500589 TCTCCCCTCCTTTAAACATCATAG 57.499 41.667 0.00 0.00 0.00 2.23
6321 6576 7.259290 AGGGCATTTTAGTAACATCGTATTG 57.741 36.000 0.00 0.00 0.00 1.90
6331 6586 2.821546 ACATCGTATTGTATGCAGCGT 58.178 42.857 0.00 0.00 0.00 5.07
6332 6587 3.194861 ACATCGTATTGTATGCAGCGTT 58.805 40.909 0.00 0.00 0.00 4.84
6334 6589 4.806775 ACATCGTATTGTATGCAGCGTTTA 59.193 37.500 0.00 0.00 0.00 2.01
6341 6599 5.984233 TTGTATGCAGCGTTTATAGAAGG 57.016 39.130 0.00 0.00 0.00 3.46
6352 6610 6.147328 AGCGTTTATAGAAGGTTTCTGTGTTC 59.853 38.462 1.71 0.00 40.94 3.18
6370 6628 3.755905 TGTTCCGCAAAGCATATTCTTCA 59.244 39.130 0.00 0.00 0.00 3.02
6371 6629 4.217334 TGTTCCGCAAAGCATATTCTTCAA 59.783 37.500 0.00 0.00 0.00 2.69
6372 6630 5.160641 GTTCCGCAAAGCATATTCTTCAAA 58.839 37.500 0.00 0.00 0.00 2.69
6373 6631 5.384063 TCCGCAAAGCATATTCTTCAAAA 57.616 34.783 0.00 0.00 0.00 2.44
6374 6632 5.777802 TCCGCAAAGCATATTCTTCAAAAA 58.222 33.333 0.00 0.00 0.00 1.94
6376 6634 6.873076 TCCGCAAAGCATATTCTTCAAAAATT 59.127 30.769 0.00 0.00 0.00 1.82
6377 6635 8.031864 TCCGCAAAGCATATTCTTCAAAAATTA 58.968 29.630 0.00 0.00 0.00 1.40
6378 6636 8.655092 CCGCAAAGCATATTCTTCAAAAATTAA 58.345 29.630 0.00 0.00 0.00 1.40
6391 6649 8.812329 TCTTCAAAAATTAATGTCCAAACAACG 58.188 29.630 0.00 0.00 39.30 4.10
6405 6668 7.041644 TGTCCAAACAACGGAGAACTAAATTAG 60.042 37.037 0.00 0.00 31.65 1.73
6407 6670 8.149647 TCCAAACAACGGAGAACTAAATTAGTA 58.850 33.333 6.04 0.00 38.26 1.82
6408 6671 8.776470 CCAAACAACGGAGAACTAAATTAGTAA 58.224 33.333 6.04 0.00 38.26 2.24
6446 7152 3.192844 AGTGCTGCTCAAAATGAATCCAG 59.807 43.478 0.00 0.00 0.00 3.86
6447 7153 2.494471 TGCTGCTCAAAATGAATCCAGG 59.506 45.455 0.00 0.00 0.00 4.45
6460 7166 2.323999 ATCCAGGCAACCCAATTTCA 57.676 45.000 0.00 0.00 37.17 2.69
6465 7171 3.368739 CCAGGCAACCCAATTTCATCTTC 60.369 47.826 0.00 0.00 37.17 2.87
6477 7183 9.492973 CCCAATTTCATCTTCAACAAGTAAATT 57.507 29.630 0.00 0.00 33.14 1.82
6488 7194 5.912396 TCAACAAGTAAATTTGACGATGCAC 59.088 36.000 0.00 0.00 0.00 4.57
6489 7195 4.794169 ACAAGTAAATTTGACGATGCACC 58.206 39.130 0.00 0.00 0.00 5.01
6508 7214 4.791974 CACCTGCAGATTTCTTTTCACTC 58.208 43.478 17.39 0.00 0.00 3.51
6555 7264 2.564947 AGAAACAACCCACACAAAAGCA 59.435 40.909 0.00 0.00 0.00 3.91
6579 7288 1.553248 TGCTATAGTTGCAACCGGAGT 59.447 47.619 25.62 9.68 37.51 3.85
6595 7305 2.997986 CGGAGTTTAACACGGCTGTATT 59.002 45.455 0.00 0.00 0.00 1.89
6655 7367 2.110901 ACAGATACAGTCGAGACGGT 57.889 50.000 13.02 13.02 42.19 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.541310 CGCAGGACCCTACAGGAACA 61.541 60.000 0.00 0.00 39.89 3.18
1 2 1.218316 CGCAGGACCCTACAGGAAC 59.782 63.158 0.00 0.00 39.89 3.62
2 3 1.229082 ACGCAGGACCCTACAGGAA 60.229 57.895 0.00 0.00 39.89 3.36
3 4 1.982395 CACGCAGGACCCTACAGGA 60.982 63.158 0.00 0.00 39.89 3.86
4 5 0.968901 TACACGCAGGACCCTACAGG 60.969 60.000 0.00 0.00 43.78 4.00
5 6 0.892755 TTACACGCAGGACCCTACAG 59.107 55.000 0.00 0.00 0.00 2.74
6 7 0.892755 CTTACACGCAGGACCCTACA 59.107 55.000 0.00 0.00 0.00 2.74
7 8 0.175073 CCTTACACGCAGGACCCTAC 59.825 60.000 0.00 0.00 32.41 3.18
8 9 0.251922 ACCTTACACGCAGGACCCTA 60.252 55.000 0.00 0.00 35.14 3.53
9 10 1.535687 ACCTTACACGCAGGACCCT 60.536 57.895 0.00 0.00 35.14 4.34
10 11 1.375523 CACCTTACACGCAGGACCC 60.376 63.158 0.00 0.00 35.14 4.46
11 12 0.250166 AACACCTTACACGCAGGACC 60.250 55.000 0.00 0.00 35.14 4.46
12 13 0.865769 CAACACCTTACACGCAGGAC 59.134 55.000 0.00 0.00 35.14 3.85
13 14 0.466543 ACAACACCTTACACGCAGGA 59.533 50.000 0.00 0.00 35.14 3.86
14 15 2.157834 TACAACACCTTACACGCAGG 57.842 50.000 0.00 0.00 37.45 4.85
15 16 2.159707 GCATACAACACCTTACACGCAG 60.160 50.000 0.00 0.00 0.00 5.18
16 17 1.801771 GCATACAACACCTTACACGCA 59.198 47.619 0.00 0.00 0.00 5.24
17 18 1.129811 GGCATACAACACCTTACACGC 59.870 52.381 0.00 0.00 0.00 5.34
18 19 2.158841 GTGGCATACAACACCTTACACG 59.841 50.000 0.00 0.00 0.00 4.49
19 20 2.158841 CGTGGCATACAACACCTTACAC 59.841 50.000 0.00 0.00 34.18 2.90
20 21 2.037381 TCGTGGCATACAACACCTTACA 59.963 45.455 0.00 0.00 34.18 2.41
21 22 2.414138 GTCGTGGCATACAACACCTTAC 59.586 50.000 0.00 0.00 34.18 2.34
22 23 2.300723 AGTCGTGGCATACAACACCTTA 59.699 45.455 0.00 0.00 34.18 2.69
23 24 1.071699 AGTCGTGGCATACAACACCTT 59.928 47.619 0.00 0.00 34.18 3.50
24 25 0.685097 AGTCGTGGCATACAACACCT 59.315 50.000 0.00 0.00 34.18 4.00
25 26 1.463444 GAAGTCGTGGCATACAACACC 59.537 52.381 0.00 0.00 34.18 4.16
26 27 1.126113 CGAAGTCGTGGCATACAACAC 59.874 52.381 0.00 0.00 34.11 3.32
27 28 1.000052 TCGAAGTCGTGGCATACAACA 60.000 47.619 0.00 0.00 40.80 3.33
28 29 1.705256 TCGAAGTCGTGGCATACAAC 58.295 50.000 0.00 0.00 40.80 3.32
29 30 2.442212 TTCGAAGTCGTGGCATACAA 57.558 45.000 0.00 0.00 40.80 2.41
30 31 2.665649 ATTCGAAGTCGTGGCATACA 57.334 45.000 3.35 0.00 40.80 2.29
31 32 4.743151 TCATTATTCGAAGTCGTGGCATAC 59.257 41.667 3.35 0.00 40.80 2.39
32 33 4.939271 TCATTATTCGAAGTCGTGGCATA 58.061 39.130 3.35 0.00 40.80 3.14
33 34 3.792401 TCATTATTCGAAGTCGTGGCAT 58.208 40.909 3.35 0.00 40.80 4.40
34 35 3.239587 TCATTATTCGAAGTCGTGGCA 57.760 42.857 3.35 0.00 40.80 4.92
35 36 3.544244 GCTTCATTATTCGAAGTCGTGGC 60.544 47.826 3.35 0.00 41.61 5.01
36 37 3.616821 TGCTTCATTATTCGAAGTCGTGG 59.383 43.478 3.35 0.00 41.61 4.94
37 38 4.840401 TGCTTCATTATTCGAAGTCGTG 57.160 40.909 3.35 0.27 41.61 4.35
38 39 5.233050 CAGATGCTTCATTATTCGAAGTCGT 59.767 40.000 3.35 0.00 41.61 4.34
39 40 5.332883 CCAGATGCTTCATTATTCGAAGTCG 60.333 44.000 3.35 0.00 41.61 4.18
40 41 5.525378 ACCAGATGCTTCATTATTCGAAGTC 59.475 40.000 3.35 0.00 41.61 3.01
41 42 5.431765 ACCAGATGCTTCATTATTCGAAGT 58.568 37.500 3.35 0.00 41.61 3.01
42 43 5.998454 ACCAGATGCTTCATTATTCGAAG 57.002 39.130 3.35 0.00 42.31 3.79
43 44 5.296780 GGAACCAGATGCTTCATTATTCGAA 59.703 40.000 0.00 0.00 0.00 3.71
44 45 4.816385 GGAACCAGATGCTTCATTATTCGA 59.184 41.667 2.07 0.00 0.00 3.71
45 46 5.100751 GGAACCAGATGCTTCATTATTCG 57.899 43.478 2.07 0.00 0.00 3.34
63 64 1.798813 CGTTGCTGAGTTGTAGGGAAC 59.201 52.381 0.00 0.00 0.00 3.62
64 65 1.270625 CCGTTGCTGAGTTGTAGGGAA 60.271 52.381 0.00 0.00 0.00 3.97
65 66 0.320374 CCGTTGCTGAGTTGTAGGGA 59.680 55.000 0.00 0.00 0.00 4.20
66 67 0.320374 TCCGTTGCTGAGTTGTAGGG 59.680 55.000 0.00 0.00 0.00 3.53
67 68 2.386661 ATCCGTTGCTGAGTTGTAGG 57.613 50.000 0.00 0.00 0.00 3.18
68 69 5.856126 TTTTATCCGTTGCTGAGTTGTAG 57.144 39.130 0.00 0.00 0.00 2.74
69 70 9.602568 TTATATTTTATCCGTTGCTGAGTTGTA 57.397 29.630 0.00 0.00 0.00 2.41
70 71 8.500753 TTATATTTTATCCGTTGCTGAGTTGT 57.499 30.769 0.00 0.00 0.00 3.32
71 72 9.221775 GTTTATATTTTATCCGTTGCTGAGTTG 57.778 33.333 0.00 0.00 0.00 3.16
72 73 8.952278 TGTTTATATTTTATCCGTTGCTGAGTT 58.048 29.630 0.00 0.00 0.00 3.01
73 74 8.500753 TGTTTATATTTTATCCGTTGCTGAGT 57.499 30.769 0.00 0.00 0.00 3.41
74 75 8.826710 TCTGTTTATATTTTATCCGTTGCTGAG 58.173 33.333 0.00 0.00 0.00 3.35
75 76 8.725405 TCTGTTTATATTTTATCCGTTGCTGA 57.275 30.769 0.00 0.00 0.00 4.26
76 77 8.826710 TCTCTGTTTATATTTTATCCGTTGCTG 58.173 33.333 0.00 0.00 0.00 4.41
77 78 8.958119 TCTCTGTTTATATTTTATCCGTTGCT 57.042 30.769 0.00 0.00 0.00 3.91
78 79 9.997482 TTTCTCTGTTTATATTTTATCCGTTGC 57.003 29.630 0.00 0.00 0.00 4.17
97 98 3.312828 CTTCGCCTCGGATATTTCTCTG 58.687 50.000 0.00 0.00 0.00 3.35
969 975 5.161358 CGTCAGAACTAAAGCACAGACATA 58.839 41.667 0.00 0.00 0.00 2.29
983 989 2.158957 ACCATGTGTCAACGTCAGAACT 60.159 45.455 0.00 0.00 0.00 3.01
1136 1142 7.201530 GGATTATGACCAACGAAGTAAGAACAG 60.202 40.741 0.00 0.00 45.00 3.16
1177 1183 8.204836 ACAATAGCCCAAGTAGTAAGTCTAATG 58.795 37.037 0.00 0.00 0.00 1.90
1178 1184 8.204836 CACAATAGCCCAAGTAGTAAGTCTAAT 58.795 37.037 0.00 0.00 0.00 1.73
1179 1185 7.364408 CCACAATAGCCCAAGTAGTAAGTCTAA 60.364 40.741 0.00 0.00 0.00 2.10
1180 1186 6.097839 CCACAATAGCCCAAGTAGTAAGTCTA 59.902 42.308 0.00 0.00 0.00 2.59
1181 1187 5.104900 CCACAATAGCCCAAGTAGTAAGTCT 60.105 44.000 0.00 0.00 0.00 3.24
1182 1188 5.105064 TCCACAATAGCCCAAGTAGTAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
1183 1189 4.781087 TCCACAATAGCCCAAGTAGTAAGT 59.219 41.667 0.00 0.00 0.00 2.24
1184 1190 5.116882 GTCCACAATAGCCCAAGTAGTAAG 58.883 45.833 0.00 0.00 0.00 2.34
1185 1191 4.080751 GGTCCACAATAGCCCAAGTAGTAA 60.081 45.833 0.00 0.00 0.00 2.24
1186 1192 3.453353 GGTCCACAATAGCCCAAGTAGTA 59.547 47.826 0.00 0.00 0.00 1.82
1187 1193 2.238898 GGTCCACAATAGCCCAAGTAGT 59.761 50.000 0.00 0.00 0.00 2.73
1188 1194 2.505819 AGGTCCACAATAGCCCAAGTAG 59.494 50.000 0.00 0.00 0.00 2.57
1189 1195 2.504175 GAGGTCCACAATAGCCCAAGTA 59.496 50.000 0.00 0.00 0.00 2.24
1190 1196 1.282157 GAGGTCCACAATAGCCCAAGT 59.718 52.381 0.00 0.00 0.00 3.16
1191 1197 1.408822 GGAGGTCCACAATAGCCCAAG 60.409 57.143 0.00 0.00 35.64 3.61
1192 1198 0.623723 GGAGGTCCACAATAGCCCAA 59.376 55.000 0.00 0.00 35.64 4.12
1193 1199 1.622607 CGGAGGTCCACAATAGCCCA 61.623 60.000 0.00 0.00 35.14 5.36
1194 1200 1.146263 CGGAGGTCCACAATAGCCC 59.854 63.158 0.00 0.00 35.14 5.19
1195 1201 0.179081 GACGGAGGTCCACAATAGCC 60.179 60.000 0.00 0.00 37.19 3.93
1196 1202 0.824759 AGACGGAGGTCCACAATAGC 59.175 55.000 0.00 0.00 44.54 2.97
1197 1203 1.825474 ACAGACGGAGGTCCACAATAG 59.175 52.381 0.00 0.00 44.54 1.73
1198 1204 1.548719 CACAGACGGAGGTCCACAATA 59.451 52.381 0.00 0.00 44.54 1.90
1199 1205 0.321671 CACAGACGGAGGTCCACAAT 59.678 55.000 0.00 0.00 44.54 2.71
1200 1206 1.046472 ACACAGACGGAGGTCCACAA 61.046 55.000 0.00 0.00 44.54 3.33
1201 1207 1.456892 ACACAGACGGAGGTCCACA 60.457 57.895 0.00 0.00 44.54 4.17
1202 1208 1.006102 CACACAGACGGAGGTCCAC 60.006 63.158 0.00 0.00 44.54 4.02
1203 1209 1.456892 ACACACAGACGGAGGTCCA 60.457 57.895 0.00 0.00 44.54 4.02
1204 1210 1.006102 CACACACAGACGGAGGTCC 60.006 63.158 0.00 0.00 44.54 4.46
1205 1211 0.597637 CACACACACAGACGGAGGTC 60.598 60.000 0.00 0.00 43.76 3.85
1206 1212 1.327690 ACACACACACAGACGGAGGT 61.328 55.000 0.00 0.00 0.00 3.85
1207 1213 0.875908 CACACACACACAGACGGAGG 60.876 60.000 0.00 0.00 0.00 4.30
1208 1214 0.179111 ACACACACACACAGACGGAG 60.179 55.000 0.00 0.00 0.00 4.63
1209 1215 0.459411 CACACACACACACAGACGGA 60.459 55.000 0.00 0.00 0.00 4.69
1210 1216 2.005995 CACACACACACACAGACGG 58.994 57.895 0.00 0.00 0.00 4.79
1211 1217 1.348250 GCACACACACACACAGACG 59.652 57.895 0.00 0.00 0.00 4.18
1212 1218 1.348250 CGCACACACACACACAGAC 59.652 57.895 0.00 0.00 0.00 3.51
1213 1219 1.813337 CCGCACACACACACACAGA 60.813 57.895 0.00 0.00 0.00 3.41
1214 1220 2.106074 ACCGCACACACACACACAG 61.106 57.895 0.00 0.00 0.00 3.66
1215 1221 2.046796 ACCGCACACACACACACA 60.047 55.556 0.00 0.00 0.00 3.72
1216 1222 2.395360 ACACCGCACACACACACAC 61.395 57.895 0.00 0.00 0.00 3.82
1217 1223 2.046796 ACACCGCACACACACACA 60.047 55.556 0.00 0.00 0.00 3.72
1218 1224 1.917782 AACACACCGCACACACACAC 61.918 55.000 0.00 0.00 0.00 3.82
1219 1225 1.672682 AACACACCGCACACACACA 60.673 52.632 0.00 0.00 0.00 3.72
1220 1226 1.226267 CAACACACCGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1221 1227 2.402572 CCAACACACCGCACACACA 61.403 57.895 0.00 0.00 0.00 3.72
1222 1228 2.109739 TCCAACACACCGCACACAC 61.110 57.895 0.00 0.00 0.00 3.82
1223 1229 2.109739 GTCCAACACACCGCACACA 61.110 57.895 0.00 0.00 0.00 3.72
1224 1230 0.531090 TAGTCCAACACACCGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
1225 1231 0.394938 ATAGTCCAACACACCGCACA 59.605 50.000 0.00 0.00 0.00 4.57
1226 1232 0.796312 CATAGTCCAACACACCGCAC 59.204 55.000 0.00 0.00 0.00 5.34
1227 1233 0.394938 ACATAGTCCAACACACCGCA 59.605 50.000 0.00 0.00 0.00 5.69
1228 1234 1.196808 CAACATAGTCCAACACACCGC 59.803 52.381 0.00 0.00 0.00 5.68
1229 1235 1.804151 CCAACATAGTCCAACACACCG 59.196 52.381 0.00 0.00 0.00 4.94
1230 1236 3.134574 TCCAACATAGTCCAACACACC 57.865 47.619 0.00 0.00 0.00 4.16
1231 1237 4.072131 ACATCCAACATAGTCCAACACAC 58.928 43.478 0.00 0.00 0.00 3.82
1232 1238 4.365514 ACATCCAACATAGTCCAACACA 57.634 40.909 0.00 0.00 0.00 3.72
1233 1239 5.009610 ACAAACATCCAACATAGTCCAACAC 59.990 40.000 0.00 0.00 0.00 3.32
1234 1240 5.136828 ACAAACATCCAACATAGTCCAACA 58.863 37.500 0.00 0.00 0.00 3.33
1235 1241 5.705609 ACAAACATCCAACATAGTCCAAC 57.294 39.130 0.00 0.00 0.00 3.77
1236 1242 5.596361 ACAACAAACATCCAACATAGTCCAA 59.404 36.000 0.00 0.00 0.00 3.53
1237 1243 5.009510 CACAACAAACATCCAACATAGTCCA 59.990 40.000 0.00 0.00 0.00 4.02
1238 1244 5.460646 CACAACAAACATCCAACATAGTCC 58.539 41.667 0.00 0.00 0.00 3.85
1239 1245 4.917415 GCACAACAAACATCCAACATAGTC 59.083 41.667 0.00 0.00 0.00 2.59
1240 1246 4.556501 CGCACAACAAACATCCAACATAGT 60.557 41.667 0.00 0.00 0.00 2.12
1241 1247 3.913763 CGCACAACAAACATCCAACATAG 59.086 43.478 0.00 0.00 0.00 2.23
1242 1248 3.304996 CCGCACAACAAACATCCAACATA 60.305 43.478 0.00 0.00 0.00 2.29
1243 1249 2.545532 CCGCACAACAAACATCCAACAT 60.546 45.455 0.00 0.00 0.00 2.71
1244 1250 1.202348 CCGCACAACAAACATCCAACA 60.202 47.619 0.00 0.00 0.00 3.33
1245 1251 1.202359 ACCGCACAACAAACATCCAAC 60.202 47.619 0.00 0.00 0.00 3.77
1246 1252 1.107114 ACCGCACAACAAACATCCAA 58.893 45.000 0.00 0.00 0.00 3.53
1247 1253 1.107114 AACCGCACAACAAACATCCA 58.893 45.000 0.00 0.00 0.00 3.41
1248 1254 1.486439 CAACCGCACAACAAACATCC 58.514 50.000 0.00 0.00 0.00 3.51
1249 1255 1.486439 CCAACCGCACAACAAACATC 58.514 50.000 0.00 0.00 0.00 3.06
1250 1256 0.529555 GCCAACCGCACAACAAACAT 60.530 50.000 0.00 0.00 37.47 2.71
1251 1257 1.153745 GCCAACCGCACAACAAACA 60.154 52.632 0.00 0.00 37.47 2.83
1252 1258 0.459411 AAGCCAACCGCACAACAAAC 60.459 50.000 0.00 0.00 41.38 2.93
1253 1259 0.247736 AAAGCCAACCGCACAACAAA 59.752 45.000 0.00 0.00 41.38 2.83
1254 1260 1.103803 TAAAGCCAACCGCACAACAA 58.896 45.000 0.00 0.00 41.38 2.83
1255 1261 1.323412 ATAAAGCCAACCGCACAACA 58.677 45.000 0.00 0.00 41.38 3.33
1256 1262 3.562567 TTATAAAGCCAACCGCACAAC 57.437 42.857 0.00 0.00 41.38 3.32
1257 1263 7.569639 TTATATTATAAAGCCAACCGCACAA 57.430 32.000 0.00 0.00 41.38 3.33
1258 1264 7.569639 TTTATATTATAAAGCCAACCGCACA 57.430 32.000 5.01 0.00 41.38 4.57
1269 1275 6.730960 TTCGCCCCGCTTTATATTATAAAG 57.269 37.500 23.28 23.28 37.53 1.85
1270 1276 6.348704 GCTTTCGCCCCGCTTTATATTATAAA 60.349 38.462 8.26 8.26 0.00 1.40
1271 1277 5.122711 GCTTTCGCCCCGCTTTATATTATAA 59.877 40.000 0.00 0.00 0.00 0.98
1272 1278 4.632688 GCTTTCGCCCCGCTTTATATTATA 59.367 41.667 0.00 0.00 0.00 0.98
1273 1279 3.439129 GCTTTCGCCCCGCTTTATATTAT 59.561 43.478 0.00 0.00 0.00 1.28
1274 1280 2.809696 GCTTTCGCCCCGCTTTATATTA 59.190 45.455 0.00 0.00 0.00 0.98
1275 1281 1.607148 GCTTTCGCCCCGCTTTATATT 59.393 47.619 0.00 0.00 0.00 1.28
1276 1282 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
1277 1283 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
1278 1284 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
1288 1294 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
1290 1296 3.678072 GCCAATTACCGAAAAAGGCTTTC 59.322 43.478 13.76 0.41 37.82 2.62
1291 1297 3.070302 TGCCAATTACCGAAAAAGGCTTT 59.930 39.130 6.68 6.68 40.14 3.51
1292 1298 2.630580 TGCCAATTACCGAAAAAGGCTT 59.369 40.909 0.00 0.00 40.14 4.35
1293 1299 2.243810 TGCCAATTACCGAAAAAGGCT 58.756 42.857 0.00 0.00 40.14 4.58
1294 1300 2.734276 TGCCAATTACCGAAAAAGGC 57.266 45.000 0.00 0.00 39.99 4.35
1295 1301 6.033966 GTCTAATGCCAATTACCGAAAAAGG 58.966 40.000 0.00 0.00 37.30 3.11
1296 1302 6.852664 AGTCTAATGCCAATTACCGAAAAAG 58.147 36.000 0.00 0.00 0.00 2.27
1297 1303 6.402766 CGAGTCTAATGCCAATTACCGAAAAA 60.403 38.462 0.00 0.00 0.00 1.94
1298 1304 5.064198 CGAGTCTAATGCCAATTACCGAAAA 59.936 40.000 0.00 0.00 0.00 2.29
1299 1305 4.569162 CGAGTCTAATGCCAATTACCGAAA 59.431 41.667 0.00 0.00 0.00 3.46
1300 1306 4.116961 CGAGTCTAATGCCAATTACCGAA 58.883 43.478 0.00 0.00 0.00 4.30
1301 1307 3.713288 CGAGTCTAATGCCAATTACCGA 58.287 45.455 0.00 0.00 0.00 4.69
1302 1308 2.221055 GCGAGTCTAATGCCAATTACCG 59.779 50.000 0.00 0.00 0.00 4.02
1303 1309 3.002348 GTGCGAGTCTAATGCCAATTACC 59.998 47.826 0.00 0.00 0.00 2.85
1304 1310 3.871594 AGTGCGAGTCTAATGCCAATTAC 59.128 43.478 0.00 0.00 0.00 1.89
1305 1311 3.871006 CAGTGCGAGTCTAATGCCAATTA 59.129 43.478 0.00 0.00 0.00 1.40
1306 1312 2.679837 CAGTGCGAGTCTAATGCCAATT 59.320 45.455 0.00 0.00 0.00 2.32
1307 1313 2.283298 CAGTGCGAGTCTAATGCCAAT 58.717 47.619 0.00 0.00 0.00 3.16
1308 1314 1.001974 ACAGTGCGAGTCTAATGCCAA 59.998 47.619 0.00 0.00 0.00 4.52
1309 1315 0.608130 ACAGTGCGAGTCTAATGCCA 59.392 50.000 0.00 0.00 0.00 4.92
1310 1316 1.394917 CAACAGTGCGAGTCTAATGCC 59.605 52.381 0.00 0.00 0.00 4.40
1311 1317 1.201965 GCAACAGTGCGAGTCTAATGC 60.202 52.381 0.00 0.00 41.93 3.56
1334 1340 4.142687 CGTTCGGAAGATATTTGCCAACTT 60.143 41.667 0.00 0.00 41.60 2.66
1573 1588 2.358898 GTGTGTGTGCCACTGAAAGAAT 59.641 45.455 0.00 0.00 44.81 2.40
1574 1589 1.742831 GTGTGTGTGCCACTGAAAGAA 59.257 47.619 0.00 0.00 44.81 2.52
1594 1613 2.001361 TTTCTTTTTCGCGCGCGTG 61.001 52.632 46.54 35.70 40.74 5.34
1595 1614 2.001880 GTTTCTTTTTCGCGCGCGT 61.002 52.632 46.54 0.00 40.74 6.01
1596 1615 1.721133 AGTTTCTTTTTCGCGCGCG 60.721 52.632 44.84 44.84 41.35 6.86
1597 1616 1.760759 CAGTTTCTTTTTCGCGCGC 59.239 52.632 27.95 23.91 0.00 6.86
1598 1617 0.657368 AGCAGTTTCTTTTTCGCGCG 60.657 50.000 26.76 26.76 0.00 6.86
1599 1618 2.309898 TAGCAGTTTCTTTTTCGCGC 57.690 45.000 0.00 0.00 0.00 6.86
1600 1619 6.523201 ACATAAATAGCAGTTTCTTTTTCGCG 59.477 34.615 0.00 0.00 0.00 5.87
1601 1620 7.796958 ACATAAATAGCAGTTTCTTTTTCGC 57.203 32.000 0.00 0.00 0.00 4.70
1807 1826 7.658179 TTAGCAGTGCAGATATATGTTTAGC 57.342 36.000 19.20 0.00 0.00 3.09
1865 1884 4.611807 GCCAATGTGACAAAATGCAACATG 60.612 41.667 0.00 0.00 30.27 3.21
1886 1905 1.248785 TACACGTGTCCTCTCCTGCC 61.249 60.000 27.16 0.00 0.00 4.85
2108 2127 0.877071 TGTCCGTCTCCGTAGTTCAC 59.123 55.000 0.00 0.00 0.00 3.18
2113 2132 1.666700 CTTCTCTGTCCGTCTCCGTAG 59.333 57.143 0.00 0.00 0.00 3.51
2173 2192 2.768492 CCTCCGCTTCTGCCATTGC 61.768 63.158 0.00 0.00 35.36 3.56
2174 2193 2.768492 GCCTCCGCTTCTGCCATTG 61.768 63.158 0.00 0.00 35.36 2.82
2184 2203 3.537206 AAGTGCTTTCGCCTCCGCT 62.537 57.895 0.00 0.00 34.43 5.52
2209 2228 4.273480 CCGTTTCACATCTTCAGACAGTTT 59.727 41.667 0.00 0.00 0.00 2.66
2238 2257 1.134946 GCATTTGCCCGCTCAATAAGT 59.865 47.619 0.00 0.00 34.31 2.24
2259 2278 3.358076 GACCCACTTCTCCCGCTCG 62.358 68.421 0.00 0.00 0.00 5.03
2412 2431 7.546250 TGGTTTACCCATTTTCAACATATGT 57.454 32.000 1.41 1.41 38.72 2.29
2537 2556 9.905713 ATGTAATCTCTGCAATTAACTCCTTAA 57.094 29.630 0.00 0.00 0.00 1.85
2559 2603 5.970640 AGGGAATAAGAGAAGGGAACATGTA 59.029 40.000 0.00 0.00 0.00 2.29
2615 2659 8.397148 GTGATTCATTTGAGAGAAAGAGAATCC 58.603 37.037 15.33 8.53 39.34 3.01
2616 2660 8.944029 TGTGATTCATTTGAGAGAAAGAGAATC 58.056 33.333 0.00 0.00 40.08 2.52
2617 2661 8.859236 TGTGATTCATTTGAGAGAAAGAGAAT 57.141 30.769 0.00 0.00 0.00 2.40
2631 2675 2.871133 CAGCGTGCATGTGATTCATTT 58.129 42.857 7.93 0.00 34.09 2.32
2679 2723 7.121759 AGCTGCATTTCAACATCACTTATAAGT 59.878 33.333 12.50 12.50 40.60 2.24
2680 2724 7.478322 AGCTGCATTTCAACATCACTTATAAG 58.522 34.615 11.05 11.05 0.00 1.73
2681 2725 7.395190 AGCTGCATTTCAACATCACTTATAA 57.605 32.000 1.02 0.00 0.00 0.98
2682 2726 7.121020 TGAAGCTGCATTTCAACATCACTTATA 59.879 33.333 10.39 0.00 31.98 0.98
2683 2727 5.909621 AGCTGCATTTCAACATCACTTAT 57.090 34.783 1.02 0.00 0.00 1.73
2684 2728 5.241285 TGAAGCTGCATTTCAACATCACTTA 59.759 36.000 10.39 0.00 31.98 2.24
2685 2729 4.038282 TGAAGCTGCATTTCAACATCACTT 59.962 37.500 10.39 0.00 31.98 3.16
2686 2730 3.570975 TGAAGCTGCATTTCAACATCACT 59.429 39.130 10.39 0.00 31.98 3.41
2687 2731 3.904571 TGAAGCTGCATTTCAACATCAC 58.095 40.909 10.39 0.00 31.98 3.06
2688 2732 4.587584 TTGAAGCTGCATTTCAACATCA 57.412 36.364 17.67 1.90 39.05 3.07
2696 2759 5.337009 CCTTGGATAAGTTGAAGCTGCATTT 60.337 40.000 0.00 0.00 31.80 2.32
2698 2761 3.698040 CCTTGGATAAGTTGAAGCTGCAT 59.302 43.478 0.00 0.00 31.80 3.96
2916 2979 6.183360 CCAAACATATGTTGCAGCACTATGTA 60.183 38.462 24.41 9.89 38.44 2.29
2926 2989 6.404708 ACATTATTGCCAAACATATGTTGCA 58.595 32.000 22.79 22.79 38.44 4.08
2963 3026 2.165030 CCAGTCTTGATTTGGTGATGCC 59.835 50.000 0.00 0.00 37.90 4.40
3027 3090 1.674322 TAACTGAAAGGCGGCCTGC 60.674 57.895 24.63 18.11 45.38 4.85
3029 3092 1.002502 GGTAACTGAAAGGCGGCCT 60.003 57.895 17.69 17.69 39.30 5.19
3030 3093 2.044555 GGGTAACTGAAAGGCGGCC 61.045 63.158 12.11 12.11 39.30 6.13
3031 3094 0.251073 TAGGGTAACTGAAAGGCGGC 59.749 55.000 0.00 0.00 39.30 6.53
3033 3096 2.618053 CACTAGGGTAACTGAAAGGCG 58.382 52.381 0.00 0.00 39.30 5.52
3034 3097 2.027100 AGCACTAGGGTAACTGAAAGGC 60.027 50.000 0.00 0.00 39.30 4.35
3035 3098 3.260884 TCAGCACTAGGGTAACTGAAAGG 59.739 47.826 0.00 0.00 39.30 3.11
3036 3099 4.537135 TCAGCACTAGGGTAACTGAAAG 57.463 45.455 0.00 0.00 35.95 2.62
3037 3100 4.967084 TTCAGCACTAGGGTAACTGAAA 57.033 40.909 10.14 0.00 41.05 2.69
3042 3105 4.202245 TGTCATTCAGCACTAGGGTAAC 57.798 45.455 0.00 0.00 0.00 2.50
3055 3118 9.739276 AAGACTAGATAAATGGTTTGTCATTCA 57.261 29.630 0.00 0.00 36.45 2.57
3462 3525 1.686587 ACATCACAGACGGACACAGAA 59.313 47.619 0.00 0.00 0.00 3.02
3463 3526 1.269723 GACATCACAGACGGACACAGA 59.730 52.381 0.00 0.00 0.00 3.41
3464 3527 1.670087 GGACATCACAGACGGACACAG 60.670 57.143 0.00 0.00 0.00 3.66
3465 3528 0.317160 GGACATCACAGACGGACACA 59.683 55.000 0.00 0.00 0.00 3.72
3466 3529 0.317160 TGGACATCACAGACGGACAC 59.683 55.000 0.00 0.00 0.00 3.67
3467 3530 1.044611 TTGGACATCACAGACGGACA 58.955 50.000 0.00 0.00 0.00 4.02
3468 3531 1.270094 TGTTGGACATCACAGACGGAC 60.270 52.381 0.00 0.00 0.00 4.79
3469 3532 1.044611 TGTTGGACATCACAGACGGA 58.955 50.000 0.00 0.00 0.00 4.69
3470 3533 1.733912 CATGTTGGACATCACAGACGG 59.266 52.381 0.00 0.00 36.53 4.79
3471 3534 1.733912 CCATGTTGGACATCACAGACG 59.266 52.381 0.00 0.00 40.96 4.18
3472 3535 2.485426 CACCATGTTGGACATCACAGAC 59.515 50.000 0.00 0.00 40.96 3.51
3473 3536 2.552809 CCACCATGTTGGACATCACAGA 60.553 50.000 2.44 0.00 40.96 3.41
3474 3537 1.814394 CCACCATGTTGGACATCACAG 59.186 52.381 2.44 0.00 40.96 3.66
3475 3538 1.144708 ACCACCATGTTGGACATCACA 59.855 47.619 17.31 0.00 40.96 3.58
3476 3539 1.541147 CACCACCATGTTGGACATCAC 59.459 52.381 17.31 0.00 40.96 3.06
3477 3540 1.423161 TCACCACCATGTTGGACATCA 59.577 47.619 17.31 0.00 40.96 3.07
3478 3541 2.086869 CTCACCACCATGTTGGACATC 58.913 52.381 17.31 0.00 40.96 3.06
3479 3542 1.272092 CCTCACCACCATGTTGGACAT 60.272 52.381 17.31 0.00 40.96 3.06
3480 3543 0.110295 CCTCACCACCATGTTGGACA 59.890 55.000 17.31 0.49 40.96 4.02
3481 3544 1.244019 GCCTCACCACCATGTTGGAC 61.244 60.000 17.31 0.00 40.96 4.02
3482 3545 1.074775 GCCTCACCACCATGTTGGA 59.925 57.895 17.31 0.00 40.96 3.53
3483 3546 2.334946 CGCCTCACCACCATGTTGG 61.335 63.158 7.91 7.91 45.02 3.77
3484 3547 0.888736 TTCGCCTCACCACCATGTTG 60.889 55.000 0.00 0.00 0.00 3.33
3485 3548 0.889186 GTTCGCCTCACCACCATGTT 60.889 55.000 0.00 0.00 0.00 2.71
3486 3549 1.302511 GTTCGCCTCACCACCATGT 60.303 57.895 0.00 0.00 0.00 3.21
3487 3550 1.003355 AGTTCGCCTCACCACCATG 60.003 57.895 0.00 0.00 0.00 3.66
3488 3551 1.003355 CAGTTCGCCTCACCACCAT 60.003 57.895 0.00 0.00 0.00 3.55
3489 3552 2.425592 CAGTTCGCCTCACCACCA 59.574 61.111 0.00 0.00 0.00 4.17
3490 3553 1.961277 CACAGTTCGCCTCACCACC 60.961 63.158 0.00 0.00 0.00 4.61
3491 3554 0.814010 AACACAGTTCGCCTCACCAC 60.814 55.000 0.00 0.00 0.00 4.16
3492 3555 0.753867 TAACACAGTTCGCCTCACCA 59.246 50.000 0.00 0.00 0.00 4.17
3493 3556 2.094762 ATAACACAGTTCGCCTCACC 57.905 50.000 0.00 0.00 0.00 4.02
3494 3557 3.846360 ACTATAACACAGTTCGCCTCAC 58.154 45.455 0.00 0.00 0.00 3.51
3495 3558 5.588240 CATACTATAACACAGTTCGCCTCA 58.412 41.667 0.00 0.00 0.00 3.86
3496 3559 4.444720 GCATACTATAACACAGTTCGCCTC 59.555 45.833 0.00 0.00 0.00 4.70
3497 3560 4.099573 AGCATACTATAACACAGTTCGCCT 59.900 41.667 0.00 0.00 0.00 5.52
3498 3561 4.369182 AGCATACTATAACACAGTTCGCC 58.631 43.478 0.00 0.00 0.00 5.54
3499 3562 5.041287 TGAGCATACTATAACACAGTTCGC 58.959 41.667 0.00 0.00 0.00 4.70
3500 3563 6.033966 TGTGAGCATACTATAACACAGTTCG 58.966 40.000 0.00 0.00 34.19 3.95
3501 3564 7.706607 TGATGTGAGCATACTATAACACAGTTC 59.293 37.037 0.00 0.00 40.58 3.01
3502 3565 7.555965 TGATGTGAGCATACTATAACACAGTT 58.444 34.615 0.00 0.00 40.58 3.16
3503 3566 7.112452 TGATGTGAGCATACTATAACACAGT 57.888 36.000 0.00 0.00 40.58 3.55
3504 3567 7.869429 TCATGATGTGAGCATACTATAACACAG 59.131 37.037 0.00 0.00 40.58 3.66
3505 3568 7.725251 TCATGATGTGAGCATACTATAACACA 58.275 34.615 0.00 0.00 41.28 3.72
3506 3569 8.768957 ATCATGATGTGAGCATACTATAACAC 57.231 34.615 7.59 0.00 40.92 3.32
3513 3576 7.927092 GCAGATATATCATGATGTGAGCATACT 59.073 37.037 18.72 4.85 40.92 2.12
3514 3577 7.709613 TGCAGATATATCATGATGTGAGCATAC 59.290 37.037 18.72 1.38 40.92 2.39
3515 3578 7.788026 TGCAGATATATCATGATGTGAGCATA 58.212 34.615 18.72 7.21 40.92 3.14
3516 3579 6.650120 TGCAGATATATCATGATGTGAGCAT 58.350 36.000 18.72 5.11 40.92 3.79
3517 3580 6.045072 TGCAGATATATCATGATGTGAGCA 57.955 37.500 18.72 16.01 40.92 4.26
3518 3581 6.036191 CACTGCAGATATATCATGATGTGAGC 59.964 42.308 23.35 13.86 40.92 4.26
3519 3582 6.036191 GCACTGCAGATATATCATGATGTGAG 59.964 42.308 23.35 5.20 40.92 3.51
3520 3583 5.873164 GCACTGCAGATATATCATGATGTGA 59.127 40.000 23.35 3.58 42.06 3.58
3521 3584 5.875359 AGCACTGCAGATATATCATGATGTG 59.125 40.000 23.35 14.11 0.00 3.21
3522 3585 6.051179 AGCACTGCAGATATATCATGATGT 57.949 37.500 23.35 14.26 0.00 3.06
3523 3586 9.413048 CTATAGCACTGCAGATATATCATGATG 57.587 37.037 23.35 4.33 0.00 3.07
3524 3587 8.586744 CCTATAGCACTGCAGATATATCATGAT 58.413 37.037 23.35 13.81 0.00 2.45
3525 3588 7.781693 TCCTATAGCACTGCAGATATATCATGA 59.218 37.037 23.35 0.00 0.00 3.07
3526 3589 7.949434 TCCTATAGCACTGCAGATATATCATG 58.051 38.462 23.35 6.52 0.00 3.07
3527 3590 8.544687 TTCCTATAGCACTGCAGATATATCAT 57.455 34.615 23.35 6.44 0.00 2.45
3528 3591 7.961326 TTCCTATAGCACTGCAGATATATCA 57.039 36.000 23.35 6.53 0.00 2.15
3529 3592 9.829507 AATTTCCTATAGCACTGCAGATATATC 57.170 33.333 23.35 4.42 0.00 1.63
3530 3593 9.829507 GAATTTCCTATAGCACTGCAGATATAT 57.170 33.333 23.35 16.00 0.00 0.86
3531 3594 9.040259 AGAATTTCCTATAGCACTGCAGATATA 57.960 33.333 23.35 16.89 0.00 0.86
3532 3595 7.823310 CAGAATTTCCTATAGCACTGCAGATAT 59.177 37.037 23.35 16.67 0.00 1.63
3533 3596 7.157347 CAGAATTTCCTATAGCACTGCAGATA 58.843 38.462 23.35 10.50 0.00 1.98
3534 3597 5.996513 CAGAATTTCCTATAGCACTGCAGAT 59.003 40.000 23.35 5.72 0.00 2.90
3535 3598 5.363101 CAGAATTTCCTATAGCACTGCAGA 58.637 41.667 23.35 0.00 0.00 4.26
3557 3620 6.522625 TGACAAAAGAAAAATGTCAGACCA 57.477 33.333 3.87 0.00 46.11 4.02
3572 3635 5.334879 CGGAGACCACCTAAAATGACAAAAG 60.335 44.000 0.00 0.00 0.00 2.27
3578 3641 2.235402 GTCCGGAGACCACCTAAAATGA 59.765 50.000 3.06 0.00 37.00 2.57
3694 3757 6.925718 TGTCTGAAGTTCAAACATAGAGAGTG 59.074 38.462 7.96 0.00 0.00 3.51
3809 3959 2.563620 TGCAATCAAGTGGATGCACAAT 59.436 40.909 20.21 7.07 36.10 2.71
3891 4128 8.160765 TGGTCAAACCTAGAAATGACTGAATTA 58.839 33.333 16.23 1.66 41.42 1.40
4141 4379 8.267620 TGAAGAATAGTGGATTGATGGTAGAT 57.732 34.615 0.00 0.00 0.00 1.98
4159 4397 4.939439 GCCAAGGCAAATGAAATGAAGAAT 59.061 37.500 6.14 0.00 41.49 2.40
4173 4411 2.118076 CCAGAAGGGCCAAGGCAA 59.882 61.111 13.87 0.00 44.11 4.52
4254 4492 4.159557 TGGGGCTAAAGAAAGCAAGATTT 58.840 39.130 0.00 0.00 44.64 2.17
4308 4546 5.345609 TCACATGCACAAATGAAAAATGC 57.654 34.783 0.00 0.00 36.81 3.56
4456 4694 1.116536 TAGCACGTGAAGGGACACCA 61.117 55.000 22.23 0.00 40.13 4.17
4481 4719 4.552166 TTTTCAGTTTGCTAGTCACAGC 57.448 40.909 0.00 0.00 42.15 4.40
4633 4871 3.056080 AGGAGGCCCATAGAAAAGCATA 58.944 45.455 0.00 0.00 33.88 3.14
4687 4925 2.656560 AACTTACAGATTCGCGAGCT 57.343 45.000 9.59 8.44 0.00 4.09
4784 5022 6.040955 TCAGTGCATAATCTAGTCCCTGTAAG 59.959 42.308 0.00 0.00 0.00 2.34
4986 5224 5.125739 TGCTGCAAAATCACATGATATCACA 59.874 36.000 7.78 0.00 33.73 3.58
4987 5225 5.584442 TGCTGCAAAATCACATGATATCAC 58.416 37.500 7.78 0.00 33.73 3.06
5098 5337 7.256756 AGAAGCAACATGACAATTATAGAGC 57.743 36.000 0.00 0.00 0.00 4.09
5116 5355 3.321111 GGTATCGGACATAGGAAGAAGCA 59.679 47.826 0.00 0.00 0.00 3.91
5149 5388 1.273606 GTACAGGACTTGAGAGCAGCA 59.726 52.381 0.00 0.00 0.00 4.41
5186 5425 2.703007 TGCAGTTGGGTAAAGGCAAAAT 59.297 40.909 0.00 0.00 0.00 1.82
5206 5445 8.482429 GCAGAATTAAAGAAATGTCAAACACTG 58.518 33.333 0.00 0.00 0.00 3.66
5207 5446 8.196771 TGCAGAATTAAAGAAATGTCAAACACT 58.803 29.630 0.00 0.00 0.00 3.55
5208 5447 8.351495 TGCAGAATTAAAGAAATGTCAAACAC 57.649 30.769 0.00 0.00 0.00 3.32
5209 5448 8.412456 TCTGCAGAATTAAAGAAATGTCAAACA 58.588 29.630 15.67 0.00 0.00 2.83
5275 5516 2.039746 TCCGGAAAAGGAGAGCATTCAA 59.960 45.455 0.00 0.00 34.92 2.69
5436 5677 8.818622 TCACTATGTACTTGTCAAGGTATAGT 57.181 34.615 21.01 21.01 35.41 2.12
5515 5756 1.338136 ACCCCCTTCACCGCTATCTG 61.338 60.000 0.00 0.00 0.00 2.90
5533 5774 2.527100 CTGGATTAACTCGTCGGTGAC 58.473 52.381 0.00 0.00 0.00 3.67
5547 5788 4.496336 GCGGCAGCCTCCTGGATT 62.496 66.667 10.54 0.00 39.54 3.01
5595 5836 2.202851 CTCGCCATCAGCTTCGCT 60.203 61.111 0.00 0.00 40.77 4.93
5710 5951 1.869767 GGCATGACCAGCTATCTTTCG 59.130 52.381 0.00 0.00 38.86 3.46
5842 6086 3.063743 GCCTCCAAAATTCCGCCCG 62.064 63.158 0.00 0.00 0.00 6.13
5867 6111 3.889520 AATTCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
5868 6112 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
5869 6113 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
5870 6114 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
5871 6115 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
5872 6116 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
5873 6117 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
5874 6118 5.470368 TGAGACAAGTAATTCAGAACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
5875 6119 5.243060 TCTGAGACAAGTAATTCAGAACGGA 59.757 40.000 0.89 0.00 42.08 4.69
5876 6120 5.470368 TCTGAGACAAGTAATTCAGAACGG 58.530 41.667 0.89 0.00 42.08 4.44
5880 6124 7.679783 TCCATTTCTGAGACAAGTAATTCAGA 58.320 34.615 0.00 0.00 43.00 3.27
5881 6125 7.912056 TCCATTTCTGAGACAAGTAATTCAG 57.088 36.000 0.00 0.00 38.67 3.02
5882 6126 7.884877 ACATCCATTTCTGAGACAAGTAATTCA 59.115 33.333 0.00 0.00 0.00 2.57
5883 6127 8.273780 ACATCCATTTCTGAGACAAGTAATTC 57.726 34.615 0.00 0.00 0.00 2.17
5884 6128 9.911788 ATACATCCATTTCTGAGACAAGTAATT 57.088 29.630 0.00 0.00 0.00 1.40
5885 6129 9.911788 AATACATCCATTTCTGAGACAAGTAAT 57.088 29.630 0.00 0.00 0.00 1.89
5886 6130 9.739276 AAATACATCCATTTCTGAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
5888 6132 9.388506 CTAAATACATCCATTTCTGAGACAAGT 57.611 33.333 0.00 0.00 30.84 3.16
5889 6133 9.605275 TCTAAATACATCCATTTCTGAGACAAG 57.395 33.333 0.00 0.00 30.84 3.16
5890 6134 9.958180 TTCTAAATACATCCATTTCTGAGACAA 57.042 29.630 0.00 0.00 30.84 3.18
5891 6135 9.383519 GTTCTAAATACATCCATTTCTGAGACA 57.616 33.333 0.00 0.00 30.84 3.41
5892 6136 9.606631 AGTTCTAAATACATCCATTTCTGAGAC 57.393 33.333 0.00 0.00 30.84 3.36
5922 6166 9.363763 CGCAGAAATGAATGTATCTAGATGTAT 57.636 33.333 15.79 6.61 0.00 2.29
5923 6167 8.576442 TCGCAGAAATGAATGTATCTAGATGTA 58.424 33.333 15.79 4.44 0.00 2.29
5924 6168 7.383572 GTCGCAGAAATGAATGTATCTAGATGT 59.616 37.037 15.79 0.00 39.69 3.06
5925 6169 7.383300 TGTCGCAGAAATGAATGTATCTAGATG 59.617 37.037 15.79 0.00 39.69 2.90
5926 6170 7.436933 TGTCGCAGAAATGAATGTATCTAGAT 58.563 34.615 10.73 10.73 39.69 1.98
5927 6171 6.805713 TGTCGCAGAAATGAATGTATCTAGA 58.194 36.000 0.00 0.00 39.69 2.43
5928 6172 7.223582 AGTTGTCGCAGAAATGAATGTATCTAG 59.776 37.037 0.00 0.00 39.69 2.43
5929 6173 7.041721 AGTTGTCGCAGAAATGAATGTATCTA 58.958 34.615 0.00 0.00 39.69 1.98
5930 6174 5.877012 AGTTGTCGCAGAAATGAATGTATCT 59.123 36.000 0.00 0.00 39.69 1.98
5931 6175 6.111768 AGTTGTCGCAGAAATGAATGTATC 57.888 37.500 0.00 0.00 39.69 2.24
5932 6176 7.609760 TTAGTTGTCGCAGAAATGAATGTAT 57.390 32.000 0.00 0.00 39.69 2.29
5933 6177 7.609760 ATTAGTTGTCGCAGAAATGAATGTA 57.390 32.000 0.00 0.00 39.69 2.29
5934 6178 5.940192 TTAGTTGTCGCAGAAATGAATGT 57.060 34.783 0.00 0.00 39.69 2.71
5935 6179 6.470235 GGAATTAGTTGTCGCAGAAATGAATG 59.530 38.462 0.00 0.00 39.69 2.67
5936 6180 6.555315 GGAATTAGTTGTCGCAGAAATGAAT 58.445 36.000 0.00 0.00 39.69 2.57
5937 6181 5.390461 CGGAATTAGTTGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
5938 6182 4.092821 CGGAATTAGTTGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
5939 6183 4.092821 TCGGAATTAGTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
5940 6184 4.250464 TCGGAATTAGTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
5941 6185 3.655486 TCGGAATTAGTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
5942 6186 3.306917 TCGGAATTAGTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
5943 6187 3.306917 TTCGGAATTAGTTGTCGCAGA 57.693 42.857 0.00 0.00 0.00 4.26
5944 6188 3.242413 CCATTCGGAATTAGTTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
5945 6189 2.675844 CCATTCGGAATTAGTTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
5946 6190 2.933906 TCCATTCGGAATTAGTTGTCGC 59.066 45.455 0.00 0.00 38.83 5.19
5947 6191 3.555956 CCTCCATTCGGAATTAGTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
5948 6192 3.877508 CCCTCCATTCGGAATTAGTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
5949 6193 3.521937 TCCCTCCATTCGGAATTAGTTGT 59.478 43.478 0.00 0.00 42.21 3.32
5950 6194 4.130118 CTCCCTCCATTCGGAATTAGTTG 58.870 47.826 0.00 0.00 42.21 3.16
5951 6195 3.780850 ACTCCCTCCATTCGGAATTAGTT 59.219 43.478 0.00 0.00 42.21 2.24
5952 6196 3.385115 ACTCCCTCCATTCGGAATTAGT 58.615 45.455 0.00 0.00 42.21 2.24
5953 6197 5.246203 TGATACTCCCTCCATTCGGAATTAG 59.754 44.000 0.00 2.04 42.21 1.73
5954 6198 5.152193 TGATACTCCCTCCATTCGGAATTA 58.848 41.667 0.00 0.00 42.21 1.40
5955 6199 3.973973 TGATACTCCCTCCATTCGGAATT 59.026 43.478 0.00 0.00 42.21 2.17
5956 6200 3.587498 TGATACTCCCTCCATTCGGAAT 58.413 45.455 0.00 0.00 42.21 3.01
5957 6201 3.040655 TGATACTCCCTCCATTCGGAA 57.959 47.619 0.00 0.00 42.21 4.30
5958 6202 2.698797 GTTGATACTCCCTCCATTCGGA 59.301 50.000 0.00 0.00 39.79 4.55
5959 6203 2.434336 TGTTGATACTCCCTCCATTCGG 59.566 50.000 0.00 0.00 0.00 4.30
5960 6204 3.819564 TGTTGATACTCCCTCCATTCG 57.180 47.619 0.00 0.00 0.00 3.34
5961 6205 3.871594 CGTTGTTGATACTCCCTCCATTC 59.128 47.826 0.00 0.00 0.00 2.67
5962 6206 3.263425 ACGTTGTTGATACTCCCTCCATT 59.737 43.478 0.00 0.00 0.00 3.16
5963 6207 2.838202 ACGTTGTTGATACTCCCTCCAT 59.162 45.455 0.00 0.00 0.00 3.41
5964 6208 2.028476 CACGTTGTTGATACTCCCTCCA 60.028 50.000 0.00 0.00 0.00 3.86
5965 6209 2.232941 TCACGTTGTTGATACTCCCTCC 59.767 50.000 0.00 0.00 0.00 4.30
5966 6210 3.587797 TCACGTTGTTGATACTCCCTC 57.412 47.619 0.00 0.00 0.00 4.30
5967 6211 3.070446 TGTTCACGTTGTTGATACTCCCT 59.930 43.478 0.00 0.00 0.00 4.20
5968 6212 3.395639 TGTTCACGTTGTTGATACTCCC 58.604 45.455 0.00 0.00 0.00 4.30
5969 6213 4.688879 TCATGTTCACGTTGTTGATACTCC 59.311 41.667 0.00 0.00 0.00 3.85
5970 6214 5.839262 TCATGTTCACGTTGTTGATACTC 57.161 39.130 0.00 0.00 0.00 2.59
5971 6215 5.390885 GCATCATGTTCACGTTGTTGATACT 60.391 40.000 0.00 0.00 0.00 2.12
6176 6421 4.651778 TGCTGATACAAATATGCCCCTAC 58.348 43.478 0.00 0.00 0.00 3.18
6220 6465 2.642807 AGGATCTTCCCCTTCACGAAAA 59.357 45.455 0.00 0.00 37.19 2.29
6224 6469 0.179000 CCAGGATCTTCCCCTTCACG 59.821 60.000 0.00 0.00 37.19 4.35
6233 6478 2.756760 TGATGCAAAAGCCAGGATCTTC 59.243 45.455 0.00 0.00 34.21 2.87
6241 6486 1.215912 CGCCATGATGCAAAAGCCA 59.784 52.632 0.00 0.00 0.00 4.75
6275 6521 5.369699 CCTATGATGTTTAAAGGAGGGGAGA 59.630 44.000 0.00 0.00 0.00 3.71
6277 6523 4.415512 CCCTATGATGTTTAAAGGAGGGGA 59.584 45.833 0.00 0.00 39.03 4.81
6298 6551 7.023197 ACAATACGATGTTACTAAAATGCCC 57.977 36.000 0.00 0.00 0.00 5.36
6321 6576 5.986004 AACCTTCTATAAACGCTGCATAC 57.014 39.130 0.00 0.00 0.00 2.39
6331 6586 5.410439 GCGGAACACAGAAACCTTCTATAAA 59.590 40.000 0.00 0.00 38.11 1.40
6332 6587 4.933400 GCGGAACACAGAAACCTTCTATAA 59.067 41.667 0.00 0.00 38.11 0.98
6334 6589 3.244422 TGCGGAACACAGAAACCTTCTAT 60.244 43.478 0.00 0.00 38.11 1.98
6341 6599 1.202245 TGCTTTGCGGAACACAGAAAC 60.202 47.619 0.00 0.00 0.00 2.78
6352 6610 6.651755 ATTTTTGAAGAATATGCTTTGCGG 57.348 33.333 0.00 0.00 0.00 5.69
6370 6628 7.493367 TCTCCGTTGTTTGGACATTAATTTTT 58.507 30.769 0.00 0.00 35.29 1.94
6371 6629 7.045126 TCTCCGTTGTTTGGACATTAATTTT 57.955 32.000 0.00 0.00 35.29 1.82
6372 6630 6.642707 TCTCCGTTGTTTGGACATTAATTT 57.357 33.333 0.00 0.00 35.29 1.82
6373 6631 6.264518 AGTTCTCCGTTGTTTGGACATTAATT 59.735 34.615 0.00 0.00 35.29 1.40
6374 6632 5.768164 AGTTCTCCGTTGTTTGGACATTAAT 59.232 36.000 0.00 0.00 35.29 1.40
6376 6634 4.710324 AGTTCTCCGTTGTTTGGACATTA 58.290 39.130 0.00 0.00 35.29 1.90
6377 6635 3.551846 AGTTCTCCGTTGTTTGGACATT 58.448 40.909 0.00 0.00 35.29 2.71
6378 6636 3.208747 AGTTCTCCGTTGTTTGGACAT 57.791 42.857 0.00 0.00 35.29 3.06
6380 6638 5.684550 ATTTAGTTCTCCGTTGTTTGGAC 57.315 39.130 0.00 0.00 0.00 4.02
6382 6640 7.198306 ACTAATTTAGTTCTCCGTTGTTTGG 57.802 36.000 3.16 0.00 34.86 3.28
6446 7152 3.959535 TGAAGATGAAATTGGGTTGCC 57.040 42.857 0.00 0.00 0.00 4.52
6447 7153 4.630111 TGTTGAAGATGAAATTGGGTTGC 58.370 39.130 0.00 0.00 0.00 4.17
6460 7166 7.538678 GCATCGTCAAATTTACTTGTTGAAGAT 59.461 33.333 7.83 7.83 45.30 2.40
6465 7171 5.116983 GGTGCATCGTCAAATTTACTTGTTG 59.883 40.000 0.00 0.00 0.00 3.33
6488 7194 3.499918 ACGAGTGAAAAGAAATCTGCAGG 59.500 43.478 15.13 0.00 0.00 4.85
6489 7195 4.739046 ACGAGTGAAAAGAAATCTGCAG 57.261 40.909 7.63 7.63 0.00 4.41
6542 7251 1.219646 GCAACATGCTTTTGTGTGGG 58.780 50.000 0.00 0.00 40.96 4.61
6563 7272 4.214758 GTGTTAAACTCCGGTTGCAACTAT 59.785 41.667 27.64 7.54 35.63 2.12
6564 7273 3.560896 GTGTTAAACTCCGGTTGCAACTA 59.439 43.478 27.64 13.42 35.63 2.24
6619 7331 7.781056 TGTATCTGTACATTGCTGTATCTTCA 58.219 34.615 0.00 0.00 39.93 3.02
6676 7388 4.385405 GTGCCTGAGAGCCAGCGT 62.385 66.667 0.00 0.00 41.57 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.