Multiple sequence alignment - TraesCS6B01G294200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G294200 chr6B 100.000 3845 0 0 1 3845 528332538 528328694 0.000000e+00 7101.0
1 TraesCS6B01G294200 chr6B 92.000 225 16 2 271 494 483334699 483334476 8.020000e-82 315.0
2 TraesCS6B01G294200 chr6B 92.000 225 16 2 268 491 685536176 685536399 8.020000e-82 315.0
3 TraesCS6B01G294200 chr6B 100.000 30 0 0 57 86 136794091 136794062 5.370000e-04 56.5
4 TraesCS6B01G294200 chr6B 100.000 30 0 0 57 86 136795044 136795015 5.370000e-04 56.5
5 TraesCS6B01G294200 chr6D 95.186 2576 100 8 483 3052 351125343 351127900 0.000000e+00 4048.0
6 TraesCS6B01G294200 chr6D 88.679 212 18 4 1 206 351121749 351121960 1.770000e-63 254.0
7 TraesCS6B01G294200 chr6D 100.000 30 0 0 57 86 63328287 63328258 5.370000e-04 56.5
8 TraesCS6B01G294200 chr6A 95.557 2386 99 4 583 2963 492333299 492330916 0.000000e+00 3812.0
9 TraesCS6B01G294200 chr6A 91.919 99 6 2 488 586 492334649 492334553 1.860000e-28 137.0
10 TraesCS6B01G294200 chr7B 92.337 796 59 2 3052 3845 693242557 693241762 0.000000e+00 1131.0
11 TraesCS6B01G294200 chr7B 84.025 795 119 8 3053 3842 202758735 202759526 0.000000e+00 758.0
12 TraesCS6B01G294200 chr5B 91.299 793 64 3 3054 3845 294133108 294133896 0.000000e+00 1077.0
13 TraesCS6B01G294200 chr5B 86.090 798 103 4 3054 3845 539094198 539093403 0.000000e+00 852.0
14 TraesCS6B01G294200 chr5B 100.000 47 0 0 887 933 455764129 455764083 1.900000e-13 87.9
15 TraesCS6B01G294200 chr7A 89.848 788 78 2 3054 3840 52881290 52882076 0.000000e+00 1011.0
16 TraesCS6B01G294200 chr7A 97.561 41 1 0 882 922 735088760 735088800 1.920000e-08 71.3
17 TraesCS6B01G294200 chrUn 89.560 795 81 2 3053 3845 132300559 132301353 0.000000e+00 1007.0
18 TraesCS6B01G294200 chrUn 92.365 668 45 4 1371 2032 105322460 105323127 0.000000e+00 946.0
19 TraesCS6B01G294200 chrUn 97.872 47 1 0 886 932 105322412 105322458 8.850000e-12 82.4
20 TraesCS6B01G294200 chr7D 84.567 797 118 4 3053 3845 242633717 242634512 0.000000e+00 785.0
21 TraesCS6B01G294200 chr7D 91.489 235 16 4 259 490 62255361 62255594 1.720000e-83 320.0
22 TraesCS6B01G294200 chr5D 84.654 795 113 7 3055 3845 270233971 270234760 0.000000e+00 784.0
23 TraesCS6B01G294200 chr5D 92.070 227 16 2 270 495 469247176 469246951 6.200000e-83 318.0
24 TraesCS6B01G294200 chr5D 92.377 223 14 3 271 492 60256317 60256097 8.020000e-82 315.0
25 TraesCS6B01G294200 chr1D 84.250 800 116 9 3053 3845 463336794 463337590 0.000000e+00 771.0
26 TraesCS6B01G294200 chr1B 86.824 592 55 9 1360 1950 193277168 193276599 1.160000e-179 640.0
27 TraesCS6B01G294200 chr1B 93.103 87 6 0 1946 2032 193246571 193246485 1.120000e-25 128.0
28 TraesCS6B01G294200 chr1B 94.737 57 3 0 1281 1337 193277223 193277167 5.290000e-14 89.8
29 TraesCS6B01G294200 chr1B 97.619 42 0 1 1162 1202 193277259 193277218 1.920000e-08 71.3
30 TraesCS6B01G294200 chr3A 92.793 222 14 2 271 491 535225523 535225743 1.720000e-83 320.0
31 TraesCS6B01G294200 chr4B 92.760 221 14 2 271 490 530233917 530234136 6.200000e-83 318.0
32 TraesCS6B01G294200 chr4B 94.286 35 1 1 54 87 671697076 671697110 7.000000e-03 52.8
33 TraesCS6B01G294200 chr1A 91.416 233 18 2 270 501 28408895 28408664 6.200000e-83 318.0
34 TraesCS6B01G294200 chr2A 92.411 224 14 3 267 489 258346968 258346747 2.230000e-82 316.0
35 TraesCS6B01G294200 chr3B 93.077 130 8 1 1834 1963 508757699 508757571 5.070000e-44 189.0
36 TraesCS6B01G294200 chr3B 94.898 98 5 0 1719 1816 508757946 508757849 1.850000e-33 154.0
37 TraesCS6B01G294200 chr4A 97.368 38 1 0 885 922 724018049 724018012 8.920000e-07 65.8
38 TraesCS6B01G294200 chr4A 96.970 33 0 1 53 85 605425303 605425334 2.000000e-03 54.7
39 TraesCS6B01G294200 chr5A 100.000 29 0 0 57 85 573768599 573768571 2.000000e-03 54.7
40 TraesCS6B01G294200 chr2B 100.000 29 0 0 57 85 26883529 26883557 2.000000e-03 54.7
41 TraesCS6B01G294200 chr2B 100.000 29 0 0 57 85 229511480 229511452 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G294200 chr6B 528328694 528332538 3844 True 7101.000000 7101 100.0000 1 3845 1 chr6B.!!$R2 3844
1 TraesCS6B01G294200 chr6D 351121749 351127900 6151 False 2151.000000 4048 91.9325 1 3052 2 chr6D.!!$F1 3051
2 TraesCS6B01G294200 chr6A 492330916 492334649 3733 True 1974.500000 3812 93.7380 488 2963 2 chr6A.!!$R1 2475
3 TraesCS6B01G294200 chr7B 693241762 693242557 795 True 1131.000000 1131 92.3370 3052 3845 1 chr7B.!!$R1 793
4 TraesCS6B01G294200 chr7B 202758735 202759526 791 False 758.000000 758 84.0250 3053 3842 1 chr7B.!!$F1 789
5 TraesCS6B01G294200 chr5B 294133108 294133896 788 False 1077.000000 1077 91.2990 3054 3845 1 chr5B.!!$F1 791
6 TraesCS6B01G294200 chr5B 539093403 539094198 795 True 852.000000 852 86.0900 3054 3845 1 chr5B.!!$R2 791
7 TraesCS6B01G294200 chr7A 52881290 52882076 786 False 1011.000000 1011 89.8480 3054 3840 1 chr7A.!!$F1 786
8 TraesCS6B01G294200 chrUn 132300559 132301353 794 False 1007.000000 1007 89.5600 3053 3845 1 chrUn.!!$F1 792
9 TraesCS6B01G294200 chrUn 105322412 105323127 715 False 514.200000 946 95.1185 886 2032 2 chrUn.!!$F2 1146
10 TraesCS6B01G294200 chr7D 242633717 242634512 795 False 785.000000 785 84.5670 3053 3845 1 chr7D.!!$F2 792
11 TraesCS6B01G294200 chr5D 270233971 270234760 789 False 784.000000 784 84.6540 3055 3845 1 chr5D.!!$F1 790
12 TraesCS6B01G294200 chr1D 463336794 463337590 796 False 771.000000 771 84.2500 3053 3845 1 chr1D.!!$F1 792
13 TraesCS6B01G294200 chr1B 193276599 193277259 660 True 267.033333 640 93.0600 1162 1950 3 chr1B.!!$R2 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 5436 0.317160 TCCGCATCGAGTGAACAACT 59.683 50.0 0.0 0.0 43.85 3.16 F
1317 5907 0.672342 AGGCGTTCGACTACAACACT 59.328 50.0 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 6480 0.250124 TTCTGTCGAACACCGCCATT 60.250 50.0 0.0 0.0 38.37 3.16 R
2997 7597 0.167908 CATTACACACGTTGCCGCAT 59.832 50.0 0.0 0.0 37.70 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 7.832769 AGCCGTTAGATAGATAGATTTTCTCC 58.167 38.462 0.00 0.00 0.00 3.71
47 49 7.081661 AGATAGATTTTCTCCCCTCTTCTCAT 58.918 38.462 0.00 0.00 0.00 2.90
49 51 4.411869 AGATTTTCTCCCCTCTTCTCATCC 59.588 45.833 0.00 0.00 0.00 3.51
60 62 9.405369 TCCCCTCTTCTCATCCAAAAATATATA 57.595 33.333 0.00 0.00 0.00 0.86
61 63 9.454859 CCCCTCTTCTCATCCAAAAATATATAC 57.545 37.037 0.00 0.00 0.00 1.47
86 88 9.668497 ACTTCCTCTGTAAACAAATATAAGACC 57.332 33.333 0.00 0.00 0.00 3.85
91 93 9.892130 CTCTGTAAACAAATATAAGACCCTCTT 57.108 33.333 0.00 0.00 40.35 2.85
132 137 8.519526 ACTTTCTTGTCACTTTAATTTCACACA 58.480 29.630 0.00 0.00 0.00 3.72
154 160 7.990886 ACACAGAATCTTTAAACTTAGACCACA 59.009 33.333 0.00 0.00 0.00 4.17
171 178 4.326826 ACCACATGATTCTTTGTGTCGAT 58.673 39.130 0.00 1.51 41.27 3.59
175 182 6.019762 CACATGATTCTTTGTGTCGATTGAG 58.980 40.000 0.00 0.00 38.69 3.02
177 184 6.427853 ACATGATTCTTTGTGTCGATTGAGAA 59.572 34.615 0.00 0.00 0.00 2.87
185 192 4.578871 TGTGTCGATTGAGAAATGGTCAT 58.421 39.130 0.00 0.00 0.00 3.06
208 3540 5.371115 TCCTTTGAGAAATAGCAAAACCG 57.629 39.130 0.00 0.00 34.01 4.44
234 3566 1.340889 ACATTTGCACCACCACATGAC 59.659 47.619 0.00 0.00 29.79 3.06
260 3592 2.347490 GAAGACCAAGCGGCCTGA 59.653 61.111 0.00 0.00 34.57 3.86
275 3607 3.729966 GGCCTGATTGGTAAGCTACTAC 58.270 50.000 0.00 0.00 38.35 2.73
276 3608 3.494573 GGCCTGATTGGTAAGCTACTACC 60.495 52.174 7.56 7.56 41.63 3.18
277 3609 3.388350 GCCTGATTGGTAAGCTACTACCT 59.612 47.826 14.34 0.00 41.78 3.08
278 3610 4.501743 GCCTGATTGGTAAGCTACTACCTC 60.502 50.000 14.34 6.55 41.78 3.85
279 3611 4.039366 CCTGATTGGTAAGCTACTACCTCC 59.961 50.000 14.34 5.67 41.78 4.30
280 3612 3.635373 TGATTGGTAAGCTACTACCTCCG 59.365 47.826 14.34 0.00 41.78 4.63
281 3613 2.814805 TGGTAAGCTACTACCTCCGT 57.185 50.000 14.34 0.00 41.78 4.69
282 3614 2.648059 TGGTAAGCTACTACCTCCGTC 58.352 52.381 14.34 0.00 41.78 4.79
283 3615 2.240667 TGGTAAGCTACTACCTCCGTCT 59.759 50.000 14.34 0.00 41.78 4.18
284 3616 2.877786 GGTAAGCTACTACCTCCGTCTC 59.122 54.545 7.28 0.00 38.69 3.36
285 3617 1.666054 AAGCTACTACCTCCGTCTCG 58.334 55.000 0.00 0.00 0.00 4.04
286 3618 0.829333 AGCTACTACCTCCGTCTCGA 59.171 55.000 0.00 0.00 0.00 4.04
287 3619 1.417145 AGCTACTACCTCCGTCTCGAT 59.583 52.381 0.00 0.00 0.00 3.59
288 3620 1.532007 GCTACTACCTCCGTCTCGATG 59.468 57.143 0.00 0.00 0.00 3.84
289 3621 2.806019 GCTACTACCTCCGTCTCGATGA 60.806 54.545 0.00 0.00 0.00 2.92
290 3622 2.414994 ACTACCTCCGTCTCGATGAA 57.585 50.000 0.00 0.00 0.00 2.57
291 3623 2.933573 ACTACCTCCGTCTCGATGAAT 58.066 47.619 0.00 0.00 0.00 2.57
292 3624 4.082665 ACTACCTCCGTCTCGATGAATA 57.917 45.455 0.00 0.00 0.00 1.75
293 3625 4.458397 ACTACCTCCGTCTCGATGAATAA 58.542 43.478 0.00 0.00 0.00 1.40
294 3626 4.885907 ACTACCTCCGTCTCGATGAATAAA 59.114 41.667 0.00 0.00 0.00 1.40
295 3627 4.939052 ACCTCCGTCTCGATGAATAAAT 57.061 40.909 0.00 0.00 0.00 1.40
296 3628 4.872664 ACCTCCGTCTCGATGAATAAATC 58.127 43.478 0.00 0.00 0.00 2.17
297 3629 4.341235 ACCTCCGTCTCGATGAATAAATCA 59.659 41.667 0.00 0.00 43.67 2.57
312 3644 9.864034 ATGAATAAATCATTCGCGTAGTTTTAG 57.136 29.630 5.77 0.00 46.85 1.85
313 3645 8.332464 TGAATAAATCATTCGCGTAGTTTTAGG 58.668 33.333 5.77 0.00 45.25 2.69
314 3646 7.781548 ATAAATCATTCGCGTAGTTTTAGGT 57.218 32.000 5.77 0.00 0.00 3.08
315 3647 5.713822 AATCATTCGCGTAGTTTTAGGTC 57.286 39.130 5.77 0.00 0.00 3.85
316 3648 3.173599 TCATTCGCGTAGTTTTAGGTCG 58.826 45.455 5.77 0.00 0.00 4.79
317 3649 2.987413 TTCGCGTAGTTTTAGGTCGA 57.013 45.000 5.77 0.00 0.00 4.20
318 3650 2.247311 TCGCGTAGTTTTAGGTCGAC 57.753 50.000 7.13 7.13 0.00 4.20
319 3651 0.903187 CGCGTAGTTTTAGGTCGACG 59.097 55.000 9.92 0.00 36.21 5.12
320 3652 1.464023 CGCGTAGTTTTAGGTCGACGA 60.464 52.381 9.92 0.00 35.42 4.20
321 3653 2.789092 CGCGTAGTTTTAGGTCGACGAT 60.789 50.000 9.92 3.12 35.42 3.73
322 3654 3.174375 GCGTAGTTTTAGGTCGACGATT 58.826 45.455 9.92 0.07 35.42 3.34
323 3655 3.609807 GCGTAGTTTTAGGTCGACGATTT 59.390 43.478 9.92 0.00 35.42 2.17
324 3656 4.793216 GCGTAGTTTTAGGTCGACGATTTA 59.207 41.667 9.92 0.00 35.42 1.40
325 3657 5.286082 GCGTAGTTTTAGGTCGACGATTTAA 59.714 40.000 9.92 0.33 35.42 1.52
326 3658 6.677319 CGTAGTTTTAGGTCGACGATTTAAC 58.323 40.000 9.92 9.76 35.42 2.01
327 3659 6.524586 CGTAGTTTTAGGTCGACGATTTAACT 59.475 38.462 9.92 15.75 35.42 2.24
328 3660 7.692291 CGTAGTTTTAGGTCGACGATTTAACTA 59.308 37.037 9.92 14.86 35.42 2.24
329 3661 9.508567 GTAGTTTTAGGTCGACGATTTAACTAT 57.491 33.333 21.08 8.18 30.93 2.12
330 3662 8.626093 AGTTTTAGGTCGACGATTTAACTATC 57.374 34.615 9.92 0.00 0.00 2.08
331 3663 8.465201 AGTTTTAGGTCGACGATTTAACTATCT 58.535 33.333 9.92 0.00 0.00 1.98
332 3664 9.722056 GTTTTAGGTCGACGATTTAACTATCTA 57.278 33.333 9.92 0.00 0.00 1.98
389 3721 9.974980 ATTTAGAAACAACATCCGTGTAAAAAT 57.025 25.926 0.00 0.00 37.67 1.82
390 3722 9.453325 TTTAGAAACAACATCCGTGTAAAAATC 57.547 29.630 0.00 0.00 37.67 2.17
391 3723 7.272037 AGAAACAACATCCGTGTAAAAATCT 57.728 32.000 0.00 0.00 37.67 2.40
392 3724 8.385898 AGAAACAACATCCGTGTAAAAATCTA 57.614 30.769 0.00 0.00 37.67 1.98
393 3725 8.287503 AGAAACAACATCCGTGTAAAAATCTAC 58.712 33.333 0.00 0.00 37.67 2.59
394 3726 6.160664 ACAACATCCGTGTAAAAATCTACG 57.839 37.500 0.00 0.00 37.67 3.51
395 3727 4.852609 ACATCCGTGTAAAAATCTACGC 57.147 40.909 0.00 0.00 36.63 4.42
402 3734 6.722972 CGTGTAAAAATCTACGCGTATACT 57.277 37.500 20.91 0.00 45.93 2.12
403 3735 7.141651 CGTGTAAAAATCTACGCGTATACTT 57.858 36.000 20.91 5.92 45.93 2.24
404 3736 7.603515 CGTGTAAAAATCTACGCGTATACTTT 58.396 34.615 20.91 12.28 45.93 2.66
405 3737 8.103924 CGTGTAAAAATCTACGCGTATACTTTT 58.896 33.333 21.69 21.69 45.93 2.27
406 3738 9.401445 GTGTAAAAATCTACGCGTATACTTTTC 57.599 33.333 21.65 15.37 0.00 2.29
407 3739 9.138062 TGTAAAAATCTACGCGTATACTTTTCA 57.862 29.630 21.65 17.05 0.00 2.69
410 3742 7.997107 AAATCTACGCGTATACTTTTCATGA 57.003 32.000 20.91 9.61 0.00 3.07
411 3743 6.988109 ATCTACGCGTATACTTTTCATGAC 57.012 37.500 20.91 0.00 0.00 3.06
412 3744 5.882553 TCTACGCGTATACTTTTCATGACA 58.117 37.500 20.91 0.00 0.00 3.58
413 3745 6.500910 TCTACGCGTATACTTTTCATGACAT 58.499 36.000 20.91 0.00 0.00 3.06
414 3746 7.641760 TCTACGCGTATACTTTTCATGACATA 58.358 34.615 20.91 0.00 0.00 2.29
415 3747 8.294577 TCTACGCGTATACTTTTCATGACATAT 58.705 33.333 20.91 0.00 0.00 1.78
416 3748 9.550811 CTACGCGTATACTTTTCATGACATATA 57.449 33.333 20.91 0.00 0.00 0.86
417 3749 8.806177 ACGCGTATACTTTTCATGACATATAA 57.194 30.769 11.67 0.00 0.00 0.98
418 3750 8.697067 ACGCGTATACTTTTCATGACATATAAC 58.303 33.333 11.67 0.00 0.00 1.89
419 3751 8.696175 CGCGTATACTTTTCATGACATATAACA 58.304 33.333 0.00 0.00 0.00 2.41
420 3752 9.793245 GCGTATACTTTTCATGACATATAACAC 57.207 33.333 0.00 0.00 0.00 3.32
446 3778 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
447 3779 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
449 3781 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
450 3782 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
451 3783 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
452 3784 6.485830 TTCCTCAAATCGATGACCTAGAAT 57.514 37.500 0.00 0.00 0.00 2.40
453 3785 6.485830 TCCTCAAATCGATGACCTAGAATT 57.514 37.500 0.00 0.00 0.00 2.17
454 3786 7.597288 TCCTCAAATCGATGACCTAGAATTA 57.403 36.000 0.00 0.00 0.00 1.40
455 3787 8.195165 TCCTCAAATCGATGACCTAGAATTAT 57.805 34.615 0.00 0.00 0.00 1.28
456 3788 8.090831 TCCTCAAATCGATGACCTAGAATTATG 58.909 37.037 0.00 0.00 0.00 1.90
457 3789 7.148507 CCTCAAATCGATGACCTAGAATTATGC 60.149 40.741 0.00 0.00 0.00 3.14
458 3790 6.366061 TCAAATCGATGACCTAGAATTATGCG 59.634 38.462 0.00 0.00 0.00 4.73
459 3791 5.644977 ATCGATGACCTAGAATTATGCGA 57.355 39.130 0.00 0.00 0.00 5.10
460 3792 5.447624 TCGATGACCTAGAATTATGCGAA 57.552 39.130 0.00 0.00 0.00 4.70
461 3793 6.025749 TCGATGACCTAGAATTATGCGAAT 57.974 37.500 0.00 0.00 0.00 3.34
462 3794 5.863935 TCGATGACCTAGAATTATGCGAATG 59.136 40.000 0.00 0.00 0.00 2.67
463 3795 5.863935 CGATGACCTAGAATTATGCGAATGA 59.136 40.000 0.00 0.00 0.00 2.57
464 3796 6.533012 CGATGACCTAGAATTATGCGAATGAT 59.467 38.462 0.00 0.00 0.00 2.45
465 3797 7.063898 CGATGACCTAGAATTATGCGAATGATT 59.936 37.037 0.00 0.00 0.00 2.57
466 3798 8.627208 ATGACCTAGAATTATGCGAATGATTT 57.373 30.769 0.00 0.00 0.00 2.17
467 3799 9.725019 ATGACCTAGAATTATGCGAATGATTTA 57.275 29.630 0.00 0.00 0.00 1.40
468 3800 9.725019 TGACCTAGAATTATGCGAATGATTTAT 57.275 29.630 0.00 0.00 0.00 1.40
474 3806 9.071276 AGAATTATGCGAATGATTTATTCACCT 57.929 29.630 0.00 0.00 44.42 4.00
478 3810 9.944663 TTATGCGAATGATTTATTCACCTAAAC 57.055 29.630 2.56 0.00 44.42 2.01
479 3811 6.482835 TGCGAATGATTTATTCACCTAAACG 58.517 36.000 2.56 0.00 44.42 3.60
480 3812 5.907391 GCGAATGATTTATTCACCTAAACGG 59.093 40.000 2.56 0.00 44.42 4.44
481 3813 6.238266 GCGAATGATTTATTCACCTAAACGGA 60.238 38.462 2.56 0.00 44.42 4.69
482 3814 7.345192 CGAATGATTTATTCACCTAAACGGAG 58.655 38.462 2.56 0.00 44.42 4.63
483 3815 7.518370 CGAATGATTTATTCACCTAAACGGAGG 60.518 40.741 2.56 0.00 44.42 4.30
515 3847 3.698029 AATTGCTATCAATGACACGGC 57.302 42.857 0.00 0.00 41.77 5.68
527 3859 2.907634 TGACACGGCACTGAAAAACTA 58.092 42.857 0.00 0.00 0.00 2.24
570 3902 7.178628 TCCGATCCTAAATCTATTTCTAGGGTG 59.821 40.741 4.99 0.00 30.15 4.61
608 5197 6.558009 AGTAACACGAGCGATTAATTAGACA 58.442 36.000 0.00 0.00 0.00 3.41
712 5301 3.545481 GACGCCGTGACAGCATCG 61.545 66.667 0.00 0.00 0.00 3.84
716 5305 0.869880 CGCCGTGACAGCATCGATTA 60.870 55.000 0.00 0.00 0.00 1.75
717 5306 1.502231 GCCGTGACAGCATCGATTAT 58.498 50.000 0.00 0.00 0.00 1.28
755 5344 1.763770 GCTCCATACCCCTGGATGG 59.236 63.158 6.57 6.57 44.23 3.51
847 5436 0.317160 TCCGCATCGAGTGAACAACT 59.683 50.000 0.00 0.00 43.85 3.16
853 5442 4.184629 GCATCGAGTGAACAACTAGGAAT 58.815 43.478 0.00 0.00 40.07 3.01
961 5551 1.471684 GACGATGGTACGGTCTCACTT 59.528 52.381 0.00 0.00 37.61 3.16
964 5554 2.527100 GATGGTACGGTCTCACTTTCG 58.473 52.381 0.00 0.00 0.00 3.46
971 5561 2.087009 GTCTCACTTTCGTCGCCCG 61.087 63.158 0.00 0.00 38.13 6.13
972 5562 3.479269 CTCACTTTCGTCGCCCGC 61.479 66.667 0.00 0.00 36.19 6.13
1317 5907 0.672342 AGGCGTTCGACTACAACACT 59.328 50.000 0.00 0.00 0.00 3.55
1329 5919 2.029288 CAACACTCTGATGCGCGGT 61.029 57.895 8.83 0.00 0.00 5.68
1386 5976 1.140407 GGCTGTACGTCGACATGCTC 61.140 60.000 17.16 0.30 0.00 4.26
1443 6033 4.393155 ATCCTCAAGGCGTGCGCA 62.393 61.111 18.36 5.66 44.11 6.09
1599 6194 1.447838 GGCGTTCGAGCAGATGGAA 60.448 57.895 0.00 0.00 39.27 3.53
1661 6257 2.816718 GTATACGAAGGCCGGGCA 59.183 61.111 31.59 9.46 43.93 5.36
1858 6454 3.807309 TCCCTGGTGGACATGTACT 57.193 52.632 10.05 0.00 38.61 2.73
1884 6480 2.124983 GGCTGCATCGAGAAGGCA 60.125 61.111 11.85 8.16 36.56 4.75
2101 6697 4.070552 GCCTCCGGTGCTTCGACT 62.071 66.667 0.00 0.00 0.00 4.18
2133 6729 2.361610 CGCAAGGTGGCTCCCAAT 60.362 61.111 1.14 0.00 34.18 3.16
2217 6813 2.586914 CTCATCGCGAGCATGCCA 60.587 61.111 16.66 0.00 34.18 4.92
2281 6877 2.499205 GGATCCACGGCGACATCA 59.501 61.111 16.62 0.00 0.00 3.07
2291 6887 3.257561 CGACATCAAGCTCGCCGG 61.258 66.667 0.00 0.00 0.00 6.13
2392 6991 0.391130 CAAGAATTGGGACGAGGCGA 60.391 55.000 0.00 0.00 43.94 5.54
2724 7323 0.107017 CCAACCTCCGGATGAGCAAT 60.107 55.000 14.21 0.00 39.98 3.56
2778 7377 1.982938 CTTCGGGAGGGAGGTCGTT 60.983 63.158 0.00 0.00 0.00 3.85
2865 7464 2.420022 GCGCCAGACAATAACTGTGAAT 59.580 45.455 0.00 0.00 38.84 2.57
2902 7501 2.788807 TGGGATGGTGTAAATATGGGCT 59.211 45.455 0.00 0.00 0.00 5.19
2904 7503 4.605813 TGGGATGGTGTAAATATGGGCTAT 59.394 41.667 0.00 0.00 0.00 2.97
2997 7597 7.977818 AGCCAGAATTATATGGTGTAGATCAA 58.022 34.615 0.00 0.00 40.21 2.57
3001 7601 8.385858 CAGAATTATATGGTGTAGATCAATGCG 58.614 37.037 0.00 0.00 0.00 4.73
3041 7641 8.629158 TGTTAATGTGCTGTACTTGAAAATCTT 58.371 29.630 0.00 0.00 0.00 2.40
3197 7806 3.510360 ACCGACTCTGCTAACTTATGTGT 59.490 43.478 0.00 0.00 0.00 3.72
3282 7891 2.225382 TGACCTCTTGTATCCACGGA 57.775 50.000 0.00 0.00 0.00 4.69
3331 7940 2.026729 TCATTTAGCATCCGGACCACAA 60.027 45.455 6.12 0.00 0.00 3.33
3403 8012 0.389556 CTCAAGAGCTCGCTTGCAGA 60.390 55.000 8.37 0.00 43.78 4.26
3415 8025 1.135575 GCTTGCAGACCAAAATCTCCG 60.136 52.381 0.00 0.00 31.94 4.63
3444 8054 0.815615 GATCCGCCACATCCCTGAAC 60.816 60.000 0.00 0.00 0.00 3.18
3477 8088 2.442830 GCCCAGAAAGCCCCATCC 60.443 66.667 0.00 0.00 0.00 3.51
3581 8192 4.394712 CGGCGGCCTCCACTTCTT 62.395 66.667 18.34 0.00 0.00 2.52
3588 8199 1.339535 GGCCTCCACTTCTTCTTGAGG 60.340 57.143 0.00 0.00 44.38 3.86
3749 8360 2.203056 CGCTTGGATCATGGCCGA 60.203 61.111 0.00 0.00 0.00 5.54
3772 8383 0.248843 CTCCTCTTCCGCTGCTTCTT 59.751 55.000 0.00 0.00 0.00 2.52
3832 8443 3.900892 CGATCGGACTCGGTGGGG 61.901 72.222 7.38 0.00 35.03 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 9.668497 GGTCTTATATTTGTTTACAGAGGAAGT 57.332 33.333 0.00 0.00 0.00 3.01
61 63 9.110502 GGGTCTTATATTTGTTTACAGAGGAAG 57.889 37.037 0.00 0.00 0.00 3.46
91 93 7.039293 TGACAAGAAAGTACTACCTCTGCATAA 60.039 37.037 0.00 0.00 0.00 1.90
128 133 7.990886 TGTGGTCTAAGTTTAAAGATTCTGTGT 59.009 33.333 0.00 0.00 0.00 3.72
132 137 9.965902 ATCATGTGGTCTAAGTTTAAAGATTCT 57.034 29.630 0.00 0.00 0.00 2.40
154 160 7.439157 TTTCTCAATCGACACAAAGAATCAT 57.561 32.000 0.00 0.00 0.00 2.45
163 169 4.001618 TGACCATTTCTCAATCGACACA 57.998 40.909 0.00 0.00 0.00 3.72
171 178 6.306199 TCTCAAAGGAATGACCATTTCTCAA 58.694 36.000 4.16 0.00 35.64 3.02
175 182 7.704047 GCTATTTCTCAAAGGAATGACCATTTC 59.296 37.037 0.00 0.00 42.04 2.17
177 184 6.664816 TGCTATTTCTCAAAGGAATGACCATT 59.335 34.615 0.00 0.00 42.04 3.16
185 192 5.533154 TCGGTTTTGCTATTTCTCAAAGGAA 59.467 36.000 0.00 0.00 34.21 3.36
208 3540 1.612950 TGGTGGTGCAAATGTGTGATC 59.387 47.619 0.00 0.00 0.00 2.92
234 3566 2.002586 CGCTTGGTCTTCAGTACCATG 58.997 52.381 0.00 0.00 46.16 3.66
260 3592 3.635836 GACGGAGGTAGTAGCTTACCAAT 59.364 47.826 15.47 0.00 44.56 3.16
275 3607 4.871513 TGATTTATTCATCGAGACGGAGG 58.128 43.478 0.00 0.00 0.00 4.30
276 3608 6.183359 CGAATGATTTATTCATCGAGACGGAG 60.183 42.308 0.00 0.00 44.51 4.63
277 3609 5.629435 CGAATGATTTATTCATCGAGACGGA 59.371 40.000 0.00 0.00 44.51 4.69
278 3610 5.666427 GCGAATGATTTATTCATCGAGACGG 60.666 44.000 0.00 0.00 44.51 4.79
279 3611 5.301165 GCGAATGATTTATTCATCGAGACG 58.699 41.667 0.00 0.00 44.51 4.18
280 3612 5.107837 ACGCGAATGATTTATTCATCGAGAC 60.108 40.000 15.93 0.00 44.51 3.36
281 3613 4.982295 ACGCGAATGATTTATTCATCGAGA 59.018 37.500 15.93 0.00 44.51 4.04
282 3614 5.256006 ACGCGAATGATTTATTCATCGAG 57.744 39.130 15.93 0.00 44.51 4.04
283 3615 5.918576 ACTACGCGAATGATTTATTCATCGA 59.081 36.000 15.93 0.00 44.51 3.59
284 3616 6.140896 ACTACGCGAATGATTTATTCATCG 57.859 37.500 15.93 9.62 44.51 3.84
285 3617 8.767944 AAAACTACGCGAATGATTTATTCATC 57.232 30.769 15.93 0.00 44.51 2.92
287 3619 8.332464 CCTAAAACTACGCGAATGATTTATTCA 58.668 33.333 15.93 0.00 44.42 2.57
288 3620 8.333186 ACCTAAAACTACGCGAATGATTTATTC 58.667 33.333 15.93 0.00 41.46 1.75
289 3621 8.205131 ACCTAAAACTACGCGAATGATTTATT 57.795 30.769 15.93 0.00 0.00 1.40
290 3622 7.306399 CGACCTAAAACTACGCGAATGATTTAT 60.306 37.037 15.93 0.48 0.00 1.40
291 3623 6.020440 CGACCTAAAACTACGCGAATGATTTA 60.020 38.462 15.93 12.06 0.00 1.40
292 3624 5.220340 CGACCTAAAACTACGCGAATGATTT 60.220 40.000 15.93 11.56 0.00 2.17
293 3625 4.266976 CGACCTAAAACTACGCGAATGATT 59.733 41.667 15.93 4.70 0.00 2.57
294 3626 3.795101 CGACCTAAAACTACGCGAATGAT 59.205 43.478 15.93 0.00 0.00 2.45
295 3627 3.119884 TCGACCTAAAACTACGCGAATGA 60.120 43.478 15.93 0.00 0.00 2.57
296 3628 3.001365 GTCGACCTAAAACTACGCGAATG 60.001 47.826 15.93 4.47 0.00 2.67
297 3629 3.174375 GTCGACCTAAAACTACGCGAAT 58.826 45.455 15.93 0.00 0.00 3.34
298 3630 2.584791 GTCGACCTAAAACTACGCGAA 58.415 47.619 15.93 0.00 0.00 4.70
299 3631 1.464023 CGTCGACCTAAAACTACGCGA 60.464 52.381 15.93 0.00 0.00 5.87
300 3632 0.903187 CGTCGACCTAAAACTACGCG 59.097 55.000 10.58 3.53 0.00 6.01
301 3633 2.247311 TCGTCGACCTAAAACTACGC 57.753 50.000 10.58 0.00 0.00 4.42
302 3634 6.524586 AGTTAAATCGTCGACCTAAAACTACG 59.475 38.462 10.58 0.00 0.00 3.51
303 3635 7.803079 AGTTAAATCGTCGACCTAAAACTAC 57.197 36.000 10.58 0.00 0.00 2.73
304 3636 9.722056 GATAGTTAAATCGTCGACCTAAAACTA 57.278 33.333 19.02 19.02 33.06 2.24
305 3637 8.465201 AGATAGTTAAATCGTCGACCTAAAACT 58.535 33.333 10.58 14.72 0.00 2.66
306 3638 8.626093 AGATAGTTAAATCGTCGACCTAAAAC 57.374 34.615 10.58 8.43 0.00 2.43
363 3695 9.974980 ATTTTTACACGGATGTTGTTTCTAAAT 57.025 25.926 0.00 0.00 40.48 1.40
364 3696 9.453325 GATTTTTACACGGATGTTGTTTCTAAA 57.547 29.630 0.00 0.00 40.48 1.85
365 3697 8.842280 AGATTTTTACACGGATGTTGTTTCTAA 58.158 29.630 0.00 0.00 40.48 2.10
366 3698 8.385898 AGATTTTTACACGGATGTTGTTTCTA 57.614 30.769 0.00 0.00 40.48 2.10
367 3699 7.272037 AGATTTTTACACGGATGTTGTTTCT 57.728 32.000 0.00 0.00 40.48 2.52
368 3700 7.267600 CGTAGATTTTTACACGGATGTTGTTTC 59.732 37.037 0.00 0.00 40.48 2.78
369 3701 7.073265 CGTAGATTTTTACACGGATGTTGTTT 58.927 34.615 0.00 0.00 40.48 2.83
370 3702 6.595794 CGTAGATTTTTACACGGATGTTGTT 58.404 36.000 0.00 0.00 40.48 2.83
371 3703 5.390145 GCGTAGATTTTTACACGGATGTTGT 60.390 40.000 0.00 0.00 40.48 3.32
372 3704 5.019498 GCGTAGATTTTTACACGGATGTTG 58.981 41.667 0.00 0.00 40.48 3.33
373 3705 4.201647 CGCGTAGATTTTTACACGGATGTT 60.202 41.667 0.00 0.00 40.48 2.71
374 3706 3.305094 CGCGTAGATTTTTACACGGATGT 59.695 43.478 0.00 0.00 43.30 3.06
375 3707 3.305094 ACGCGTAGATTTTTACACGGATG 59.695 43.478 11.67 0.00 34.39 3.51
376 3708 3.514645 ACGCGTAGATTTTTACACGGAT 58.485 40.909 11.67 0.00 34.39 4.18
377 3709 2.945278 ACGCGTAGATTTTTACACGGA 58.055 42.857 11.67 0.00 34.39 4.69
378 3710 5.682862 AGTATACGCGTAGATTTTTACACGG 59.317 40.000 24.78 0.00 34.39 4.94
379 3711 6.722972 AGTATACGCGTAGATTTTTACACG 57.277 37.500 24.78 0.00 35.75 4.49
380 3712 9.401445 GAAAAGTATACGCGTAGATTTTTACAC 57.599 33.333 32.71 22.44 30.17 2.90
381 3713 9.138062 TGAAAAGTATACGCGTAGATTTTTACA 57.862 29.630 32.71 28.09 30.17 2.41
384 3716 8.875803 TCATGAAAAGTATACGCGTAGATTTTT 58.124 29.630 32.98 32.98 31.82 1.94
385 3717 8.325997 GTCATGAAAAGTATACGCGTAGATTTT 58.674 33.333 23.27 23.27 0.00 1.82
386 3718 7.490079 TGTCATGAAAAGTATACGCGTAGATTT 59.510 33.333 24.78 19.55 0.00 2.17
387 3719 6.976349 TGTCATGAAAAGTATACGCGTAGATT 59.024 34.615 24.78 14.30 0.00 2.40
388 3720 6.500910 TGTCATGAAAAGTATACGCGTAGAT 58.499 36.000 24.78 12.46 0.00 1.98
389 3721 5.882553 TGTCATGAAAAGTATACGCGTAGA 58.117 37.500 24.78 17.99 0.00 2.59
390 3722 6.749216 ATGTCATGAAAAGTATACGCGTAG 57.251 37.500 24.78 6.80 0.00 3.51
391 3723 9.896263 TTATATGTCATGAAAAGTATACGCGTA 57.104 29.630 22.94 22.94 0.00 4.42
392 3724 8.697067 GTTATATGTCATGAAAAGTATACGCGT 58.303 33.333 19.17 19.17 0.00 6.01
393 3725 8.696175 TGTTATATGTCATGAAAAGTATACGCG 58.304 33.333 3.53 3.53 0.00 6.01
394 3726 9.793245 GTGTTATATGTCATGAAAAGTATACGC 57.207 33.333 0.00 0.00 0.00 4.42
420 3752 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
421 3753 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
423 3755 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
424 3756 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
425 3757 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
426 3758 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
427 3759 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
428 3760 6.485830 TTCTAGGTCATCGATTTGAGGAAT 57.514 37.500 0.00 0.00 39.46 3.01
429 3761 5.932619 TTCTAGGTCATCGATTTGAGGAA 57.067 39.130 0.00 0.00 39.46 3.36
430 3762 6.485830 AATTCTAGGTCATCGATTTGAGGA 57.514 37.500 0.00 0.00 34.44 3.71
431 3763 7.148507 GCATAATTCTAGGTCATCGATTTGAGG 60.149 40.741 0.00 0.00 0.00 3.86
432 3764 7.411264 CGCATAATTCTAGGTCATCGATTTGAG 60.411 40.741 0.00 0.00 0.00 3.02
433 3765 6.366061 CGCATAATTCTAGGTCATCGATTTGA 59.634 38.462 0.00 0.00 0.00 2.69
434 3766 6.366061 TCGCATAATTCTAGGTCATCGATTTG 59.634 38.462 0.00 0.00 0.00 2.32
435 3767 6.455647 TCGCATAATTCTAGGTCATCGATTT 58.544 36.000 0.00 0.00 0.00 2.17
436 3768 6.025749 TCGCATAATTCTAGGTCATCGATT 57.974 37.500 0.00 0.00 0.00 3.34
437 3769 5.644977 TCGCATAATTCTAGGTCATCGAT 57.355 39.130 0.00 0.00 0.00 3.59
438 3770 5.447624 TTCGCATAATTCTAGGTCATCGA 57.552 39.130 0.00 0.00 0.00 3.59
439 3771 5.863935 TCATTCGCATAATTCTAGGTCATCG 59.136 40.000 0.00 0.00 0.00 3.84
440 3772 7.840342 ATCATTCGCATAATTCTAGGTCATC 57.160 36.000 0.00 0.00 0.00 2.92
441 3773 8.627208 AAATCATTCGCATAATTCTAGGTCAT 57.373 30.769 0.00 0.00 0.00 3.06
442 3774 9.725019 ATAAATCATTCGCATAATTCTAGGTCA 57.275 29.630 0.00 0.00 0.00 4.02
457 3789 7.241663 TCCGTTTAGGTGAATAAATCATTCG 57.758 36.000 0.00 0.00 41.57 3.34
458 3790 7.639945 CCTCCGTTTAGGTGAATAAATCATTC 58.360 38.462 0.00 0.00 40.97 2.67
459 3791 7.568199 CCTCCGTTTAGGTGAATAAATCATT 57.432 36.000 0.00 0.00 40.97 2.57
472 3804 4.806640 TTTGGTACTACCTCCGTTTAGG 57.193 45.455 6.79 0.00 39.58 2.69
527 3859 6.043706 AGGATCGGATCTTTCATGGTTATCTT 59.956 38.462 16.96 0.00 0.00 2.40
570 3902 4.159135 TCGTGTTACTTAGGACTTGGATCC 59.841 45.833 4.20 4.20 39.28 3.36
608 5197 2.056906 GCCGGGGCCATACTCTGAAT 62.057 60.000 4.39 0.00 34.56 2.57
725 5314 0.813610 TATGGAGCGGACAAATGGCG 60.814 55.000 0.00 0.00 0.00 5.69
755 5344 0.896923 TTTCATGGGCTGTGGAATGC 59.103 50.000 0.00 0.00 0.00 3.56
847 5436 1.569548 ACGTCCCTCTCCAGATTCCTA 59.430 52.381 0.00 0.00 0.00 2.94
853 5442 1.875422 ATCCCACGTCCCTCTCCAGA 61.875 60.000 0.00 0.00 0.00 3.86
1317 5907 3.964221 GACGTGACCGCGCATCAGA 62.964 63.158 8.75 0.00 37.70 3.27
1426 6016 4.393155 TGCGCACGCCTTGAGGAT 62.393 61.111 5.66 0.00 41.09 3.24
1647 6243 4.077184 CACTGCCCGGCCTTCGTA 62.077 66.667 7.03 0.00 37.11 3.43
1884 6480 0.250124 TTCTGTCGAACACCGCCATT 60.250 50.000 0.00 0.00 38.37 3.16
1902 6498 1.156736 CGTTCTTCTTGCCGTCCATT 58.843 50.000 0.00 0.00 0.00 3.16
1974 6570 3.259425 GAACACCTGCAGCGCCTTG 62.259 63.158 8.66 0.00 0.00 3.61
2133 6729 3.041351 CAACCGTAGTGCTGCGCA 61.041 61.111 10.98 10.98 37.37 6.09
2148 6744 0.323633 CCATGAGGTCCACCATGCAA 60.324 55.000 15.18 0.00 38.95 4.08
2175 6771 4.475135 GCTTCGTCCAGCCTCCCC 62.475 72.222 0.00 0.00 33.21 4.81
2207 6803 3.499737 GACCCGTTGGCATGCTCG 61.500 66.667 18.92 18.37 33.59 5.03
2374 6973 0.391263 GTCGCCTCGTCCCAATTCTT 60.391 55.000 0.00 0.00 0.00 2.52
2463 7062 4.778143 AACCGGTGCATCTCGCCC 62.778 66.667 8.52 0.00 42.41 6.13
2509 7108 2.131294 ATCTCGTAGATGTCGGCCGC 62.131 60.000 23.51 16.75 32.80 6.53
2724 7323 2.656646 CTGTAGGCGTGGCACTCA 59.343 61.111 16.72 6.18 0.00 3.41
2778 7377 3.307906 CGGTTCCGGTCCCTGACA 61.308 66.667 0.00 0.00 33.68 3.58
2878 7477 4.752590 GCCCATATTTACACCATCCCATCA 60.753 45.833 0.00 0.00 0.00 3.07
2902 7501 6.917477 GCATACGCTTGGATGAAAATTCAATA 59.083 34.615 0.00 0.00 36.50 1.90
2904 7503 5.101628 GCATACGCTTGGATGAAAATTCAA 58.898 37.500 0.00 0.00 36.50 2.69
2970 7570 9.100197 TGATCTACACCATATAATTCTGGCTTA 57.900 33.333 0.00 0.00 35.88 3.09
2978 7578 6.094048 GCCGCATTGATCTACACCATATAATT 59.906 38.462 0.00 0.00 0.00 1.40
2997 7597 0.167908 CATTACACACGTTGCCGCAT 59.832 50.000 0.00 0.00 37.70 4.73
3001 7601 4.615121 CACATTAACATTACACACGTTGCC 59.385 41.667 0.00 0.00 0.00 4.52
3197 7806 1.068610 GTCGCTTTGCTAATGTTGCCA 60.069 47.619 0.00 0.00 0.00 4.92
3213 7822 1.493134 AAGTTTCGTGGGTTCGTCGC 61.493 55.000 0.00 0.00 0.00 5.19
3282 7891 2.653702 GAGCTGTCGAGTGCTGGT 59.346 61.111 15.60 0.15 39.91 4.00
3331 7940 1.347707 TGTCGAGCTTGACTCCCAAAT 59.652 47.619 29.85 0.00 43.01 2.32
3403 8012 2.009774 CGAATCAGCGGAGATTTTGGT 58.990 47.619 0.00 0.00 38.30 3.67
3444 8054 2.409870 GGCGGGGCTCTGTCATTTG 61.410 63.158 0.00 0.00 0.00 2.32
3477 8088 1.067821 GGAGCTGTAATCCGAGACCAG 59.932 57.143 0.00 0.00 0.00 4.00
3572 8183 2.561419 CCGTACCTCAAGAAGAAGTGGA 59.439 50.000 0.00 0.00 0.00 4.02
3581 8192 0.392461 GGCAATGCCGTACCTCAAGA 60.392 55.000 9.14 0.00 39.62 3.02
3695 8306 2.892334 GCACGCAACGAAGCAAGGA 61.892 57.895 0.00 0.00 33.55 3.36
3749 8360 0.902516 AGCAGCGGAAGAGGAGAAGT 60.903 55.000 0.00 0.00 0.00 3.01
3772 8383 4.704833 GCTGCTCGGGTGGCTTGA 62.705 66.667 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.