Multiple sequence alignment - TraesCS6B01G293600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G293600 chr6B 100.000 6562 0 0 1977 8538 527566529 527573090 0.000000e+00 12118.0
1 TraesCS6B01G293600 chr6B 100.000 1592 0 0 1 1592 527564553 527566144 0.000000e+00 2940.0
2 TraesCS6B01G293600 chr6B 93.740 1230 61 7 5267 6487 314032014 314030792 0.000000e+00 1831.0
3 TraesCS6B01G293600 chr6B 98.319 119 2 0 6580 6698 202844534 202844652 8.680000e-50 209.0
4 TraesCS6B01G293600 chr6B 94.615 130 5 2 6570 6698 226196672 226196544 5.230000e-47 200.0
5 TraesCS6B01G293600 chr6A 97.389 3294 80 2 1979 5267 491564325 491567617 0.000000e+00 5602.0
6 TraesCS6B01G293600 chr6A 96.348 1369 36 6 6702 8067 491567681 491569038 0.000000e+00 2239.0
7 TraesCS6B01G293600 chr6A 96.277 1343 38 7 203 1544 491562654 491563985 0.000000e+00 2193.0
8 TraesCS6B01G293600 chr6A 96.516 287 9 1 8066 8351 491569007 491569293 2.790000e-129 473.0
9 TraesCS6B01G293600 chr6A 90.783 217 12 3 1 209 491562401 491562617 5.050000e-72 283.0
10 TraesCS6B01G293600 chr6D 96.094 3303 93 13 1977 5267 351753065 351749787 0.000000e+00 5352.0
11 TraesCS6B01G293600 chr6D 95.106 1655 44 13 6702 8351 351749723 351748101 0.000000e+00 2573.0
12 TraesCS6B01G293600 chr6D 95.512 1337 51 6 209 1544 351754496 351753168 0.000000e+00 2128.0
13 TraesCS6B01G293600 chr6D 88.584 219 15 4 1 209 351754756 351754538 3.060000e-64 257.0
14 TraesCS6B01G293600 chr6D 96.063 127 4 1 6572 6698 435990645 435990520 1.120000e-48 206.0
15 TraesCS6B01G293600 chr6D 85.556 90 12 1 1981 2070 418199509 418199421 9.130000e-15 93.5
16 TraesCS6B01G293600 chr6D 100.000 29 0 0 8510 8538 351748102 351748074 4.000000e-03 54.7
17 TraesCS6B01G293600 chr7B 95.455 1210 49 4 5266 6471 747365159 747363952 0.000000e+00 1925.0
18 TraesCS6B01G293600 chr7B 96.065 1169 44 2 5266 6432 705577856 705576688 0.000000e+00 1903.0
19 TraesCS6B01G293600 chr5B 94.830 1238 48 7 5267 6492 446819048 446820281 0.000000e+00 1917.0
20 TraesCS6B01G293600 chr5B 96.032 126 5 0 6573 6698 125256966 125257091 1.120000e-48 206.0
21 TraesCS6B01G293600 chr2B 96.632 1158 34 3 5313 6466 397937422 397938578 0.000000e+00 1917.0
22 TraesCS6B01G293600 chr2A 94.214 1227 65 4 5267 6488 19889506 19888281 0.000000e+00 1868.0
23 TraesCS6B01G293600 chr5A 93.638 1226 71 5 5267 6487 671398965 671400188 0.000000e+00 1825.0
24 TraesCS6B01G293600 chr4A 96.488 1082 34 4 5267 6347 729512401 729511323 0.000000e+00 1784.0
25 TraesCS6B01G293600 chr4A 96.032 126 4 1 6573 6698 489960377 489960501 4.040000e-48 204.0
26 TraesCS6B01G293600 chr4A 86.957 92 11 1 1985 2076 455925949 455925859 1.520000e-17 102.0
27 TraesCS6B01G293600 chrUn 95.036 1108 48 5 5387 6490 421223804 421224908 0.000000e+00 1735.0
28 TraesCS6B01G293600 chr3B 92.039 1231 82 13 5263 6491 9883062 9884278 0.000000e+00 1716.0
29 TraesCS6B01G293600 chr3B 95.808 167 7 0 8347 8513 183601083 183601249 3.930000e-68 270.0
30 TraesCS6B01G293600 chr3B 95.679 162 7 0 8350 8511 410043728 410043889 2.360000e-65 261.0
31 TraesCS6B01G293600 chr3B 93.064 173 11 1 8343 8515 540174923 540175094 1.420000e-62 252.0
32 TraesCS6B01G293600 chr3B 87.629 97 11 1 1977 2073 24945192 24945287 2.520000e-20 111.0
33 TraesCS6B01G293600 chr3D 93.678 174 9 2 8342 8513 410670053 410670226 8.500000e-65 259.0
34 TraesCS6B01G293600 chr3D 92.982 171 12 0 8348 8518 238999412 238999582 5.120000e-62 250.0
35 TraesCS6B01G293600 chr4B 95.062 162 8 0 8350 8511 483266540 483266379 1.100000e-63 255.0
36 TraesCS6B01G293600 chr4B 85.870 92 12 1 1985 2076 180245219 180245129 7.050000e-16 97.1
37 TraesCS6B01G293600 chr4B 85.870 92 12 1 1985 2076 180245761 180245671 7.050000e-16 97.1
38 TraesCS6B01G293600 chr1B 94.512 164 9 0 8350 8513 183877361 183877198 3.960000e-63 254.0
39 TraesCS6B01G293600 chr7A 93.491 169 11 0 8348 8516 105168194 105168362 1.420000e-62 252.0
40 TraesCS6B01G293600 chr2D 93.491 169 10 1 8346 8514 305514866 305515033 5.120000e-62 250.0
41 TraesCS6B01G293600 chr2D 86.667 105 11 3 1977 2079 592408631 592408528 7.000000e-21 113.0
42 TraesCS6B01G293600 chr2D 87.356 87 10 1 1977 2063 347803004 347803089 1.960000e-16 99.0
43 TraesCS6B01G293600 chr7D 98.305 118 2 0 6581 6698 626613039 626613156 3.120000e-49 207.0
44 TraesCS6B01G293600 chr5D 97.521 121 3 0 6578 6698 27047958 27047838 3.120000e-49 207.0
45 TraesCS6B01G293600 chr5D 95.276 127 6 0 6572 6698 326368788 326368914 1.450000e-47 202.0
46 TraesCS6B01G293600 chr5D 87.629 97 10 2 1977 2073 454025091 454025185 2.520000e-20 111.0
47 TraesCS6B01G293600 chr1D 97.458 118 3 0 6581 6698 43298886 43298769 1.450000e-47 202.0
48 TraesCS6B01G293600 chr3A 86.000 100 13 1 1977 2076 51452952 51452854 1.170000e-18 106.0
49 TraesCS6B01G293600 chr3A 84.000 100 14 2 1977 2076 19470550 19470453 2.540000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G293600 chr6B 527564553 527573090 8537 False 7529.00 12118 100.0000 1 8538 2 chr6B.!!$F2 8537
1 TraesCS6B01G293600 chr6B 314030792 314032014 1222 True 1831.00 1831 93.7400 5267 6487 1 chr6B.!!$R2 1220
2 TraesCS6B01G293600 chr6A 491562401 491569293 6892 False 2158.00 5602 95.4626 1 8351 5 chr6A.!!$F1 8350
3 TraesCS6B01G293600 chr6D 351748074 351754756 6682 True 2072.94 5352 95.0592 1 8538 5 chr6D.!!$R3 8537
4 TraesCS6B01G293600 chr7B 747363952 747365159 1207 True 1925.00 1925 95.4550 5266 6471 1 chr7B.!!$R2 1205
5 TraesCS6B01G293600 chr7B 705576688 705577856 1168 True 1903.00 1903 96.0650 5266 6432 1 chr7B.!!$R1 1166
6 TraesCS6B01G293600 chr5B 446819048 446820281 1233 False 1917.00 1917 94.8300 5267 6492 1 chr5B.!!$F2 1225
7 TraesCS6B01G293600 chr2B 397937422 397938578 1156 False 1917.00 1917 96.6320 5313 6466 1 chr2B.!!$F1 1153
8 TraesCS6B01G293600 chr2A 19888281 19889506 1225 True 1868.00 1868 94.2140 5267 6488 1 chr2A.!!$R1 1221
9 TraesCS6B01G293600 chr5A 671398965 671400188 1223 False 1825.00 1825 93.6380 5267 6487 1 chr5A.!!$F1 1220
10 TraesCS6B01G293600 chr4A 729511323 729512401 1078 True 1784.00 1784 96.4880 5267 6347 1 chr4A.!!$R2 1080
11 TraesCS6B01G293600 chrUn 421223804 421224908 1104 False 1735.00 1735 95.0360 5387 6490 1 chrUn.!!$F1 1103
12 TraesCS6B01G293600 chr3B 9883062 9884278 1216 False 1716.00 1716 92.0390 5263 6491 1 chr3B.!!$F1 1228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 372 0.586319 ACGTTCGTGCTCATGTTTGG 59.414 50.000 0.00 0.00 0.00 3.28 F
277 374 1.002900 CGTTCGTGCTCATGTTTGGTT 60.003 47.619 0.00 0.00 0.00 3.67 F
1176 1274 2.510800 TGATCAGATTCCAGAATGCCCA 59.489 45.455 0.00 0.00 31.97 5.36 F
1591 1707 1.073284 TGGGAGTTCTGCTTTGGTACC 59.927 52.381 4.43 4.43 0.00 3.34 F
3109 3240 1.844497 GTAGCCTGGGGTTAGATGGTT 59.156 52.381 0.00 0.00 0.00 3.67 F
3489 3622 3.659786 TGTCATGTTTCCACTTCCTACG 58.340 45.455 0.00 0.00 0.00 3.51 F
4946 5079 0.530650 ATGCATACCCTTCGTCTGCG 60.531 55.000 0.00 0.00 45.20 5.18 F
5955 6092 0.687354 AGGGAATGACGCAGACAACT 59.313 50.000 0.00 0.00 35.03 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1591 1.598924 GCTCTGAAACTTGTGCAGTGC 60.599 52.381 8.58 8.58 40.45 4.40 R
1572 1687 1.822506 GGTACCAAAGCAGAACTCCC 58.177 55.000 7.15 0.00 0.00 4.30 R
2975 3106 1.300971 CCGAGTGAGGTTGGCACATG 61.301 60.000 0.00 0.00 39.30 3.21 R
3489 3622 1.214589 CTGCACCATGCTGGAAAGC 59.785 57.895 8.91 9.49 45.31 3.51 R
4946 5079 3.015327 AGAAGAGCATGTTTGATCAGGC 58.985 45.455 0.00 0.00 40.79 4.85 R
5199 5332 5.122396 CCAAGTCACCATTAGTTTCTAGTGC 59.878 44.000 0.00 0.00 0.00 4.40 R
6502 6653 0.105039 CATTCTAGACACTCGGGGCC 59.895 60.000 0.00 0.00 0.00 5.80 R
7668 7820 1.472480 GCCTGCGGAAAGAATTGCTTA 59.528 47.619 0.00 0.00 35.24 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.964911 CGTCTGGATTCCTTCTCGC 58.035 57.895 3.95 0.00 0.00 5.03
98 99 2.033194 GCTGGTGGTTGTAGGCGAC 61.033 63.158 0.00 0.00 0.00 5.19
112 113 4.565166 TGTAGGCGACAATTCTACGATTTG 59.435 41.667 0.00 0.00 36.94 2.32
119 120 3.242739 ACAATTCTACGATTTGATGCGCC 60.243 43.478 4.18 0.00 30.50 6.53
146 147 6.086222 CGGGTGATTTTAGATGTGTTTTGAG 58.914 40.000 0.00 0.00 0.00 3.02
148 149 7.094975 CGGGTGATTTTAGATGTGTTTTGAGTA 60.095 37.037 0.00 0.00 0.00 2.59
149 150 8.573035 GGGTGATTTTAGATGTGTTTTGAGTAA 58.427 33.333 0.00 0.00 0.00 2.24
150 151 9.394477 GGTGATTTTAGATGTGTTTTGAGTAAC 57.606 33.333 0.00 0.00 0.00 2.50
151 152 9.944663 GTGATTTTAGATGTGTTTTGAGTAACA 57.055 29.630 0.00 0.00 35.75 2.41
174 185 3.064207 GTTCGTGAATACCTGCTTGTCA 58.936 45.455 0.00 0.00 0.00 3.58
227 324 3.434299 GGTTATGTTGTGGTAGAACCGTG 59.566 47.826 0.00 0.00 42.58 4.94
241 338 4.377897 AGAACCGTGGAACTGAGTTTAAG 58.622 43.478 0.00 0.00 31.75 1.85
243 340 3.725490 ACCGTGGAACTGAGTTTAAGAC 58.275 45.455 0.00 0.00 31.75 3.01
249 346 4.586001 TGGAACTGAGTTTAAGACGGTAGT 59.414 41.667 0.00 0.00 0.00 2.73
258 355 9.128107 TGAGTTTAAGACGGTAGTAAATTTACG 57.872 33.333 19.92 12.24 38.65 3.18
259 356 9.129209 GAGTTTAAGACGGTAGTAAATTTACGT 57.871 33.333 19.92 15.02 38.65 3.57
260 357 9.476202 AGTTTAAGACGGTAGTAAATTTACGTT 57.524 29.630 19.92 8.63 38.65 3.99
261 358 9.727403 GTTTAAGACGGTAGTAAATTTACGTTC 57.273 33.333 19.92 14.33 38.65 3.95
262 359 6.617289 AAGACGGTAGTAAATTTACGTTCG 57.383 37.500 24.36 24.36 38.65 3.95
263 360 5.699839 AGACGGTAGTAAATTTACGTTCGT 58.300 37.500 28.11 28.11 38.61 3.85
264 361 5.569059 AGACGGTAGTAAATTTACGTTCGTG 59.431 40.000 30.47 19.66 37.32 4.35
265 362 4.089923 ACGGTAGTAAATTTACGTTCGTGC 59.910 41.667 27.63 14.93 38.65 5.34
275 372 0.586319 ACGTTCGTGCTCATGTTTGG 59.414 50.000 0.00 0.00 0.00 3.28
277 374 1.002900 CGTTCGTGCTCATGTTTGGTT 60.003 47.619 0.00 0.00 0.00 3.67
517 614 6.442541 TTCCTTAGGAATTTGACCTGTGTA 57.557 37.500 10.01 0.00 36.71 2.90
541 639 7.728847 AATTTGGTCTTAACTTTTTCATGGC 57.271 32.000 0.00 0.00 0.00 4.40
800 898 3.377485 GGAGAAGAACCTTTAAATCCCGC 59.623 47.826 0.00 0.00 0.00 6.13
899 997 9.383519 AGTCATATCTTTTTGTGTATACAGGTG 57.616 33.333 5.62 0.00 38.23 4.00
1176 1274 2.510800 TGATCAGATTCCAGAATGCCCA 59.489 45.455 0.00 0.00 31.97 5.36
1282 1380 5.489792 AAGTTCTTCTCTATGTTGCTCCA 57.510 39.130 0.00 0.00 0.00 3.86
1293 1391 7.011389 TCTCTATGTTGCTCCACGATTATTTTG 59.989 37.037 0.00 0.00 0.00 2.44
1521 1619 4.614535 GCACAAGTTTCAGAGCTTATGGTG 60.615 45.833 0.00 0.00 0.00 4.17
1591 1707 1.073284 TGGGAGTTCTGCTTTGGTACC 59.927 52.381 4.43 4.43 0.00 3.34
1999 2115 5.793030 AAGGTGGAGATTAGAAGATACCG 57.207 43.478 0.00 0.00 32.41 4.02
2003 2119 4.278669 GTGGAGATTAGAAGATACCGCTCA 59.721 45.833 0.00 0.00 0.00 4.26
2069 2193 8.432013 GCATTGGGAGAATAGGGATTTTAATTT 58.568 33.333 0.00 0.00 0.00 1.82
2316 2447 8.882736 GTGTATGTTCATGATGACTGTAAATGA 58.117 33.333 0.00 0.00 0.00 2.57
2317 2448 9.617523 TGTATGTTCATGATGACTGTAAATGAT 57.382 29.630 0.00 0.00 0.00 2.45
2415 2546 4.322080 AAGCAAACCTTTTGGAACTAGC 57.678 40.909 1.07 0.00 44.07 3.42
2428 2559 4.637276 TGGAACTAGCGAATGTCTTGAAA 58.363 39.130 0.00 0.00 0.00 2.69
2786 2917 8.068892 AGGATTTGTTCGAAGATACTCTAGTT 57.931 34.615 0.00 0.00 35.04 2.24
3034 3165 9.255304 GGCATTTCTTTATTTTGTGAAGTTACA 57.745 29.630 0.00 0.00 0.00 2.41
3106 3237 2.103263 GAGTGTAGCCTGGGGTTAGATG 59.897 54.545 0.00 0.00 0.00 2.90
3109 3240 1.844497 GTAGCCTGGGGTTAGATGGTT 59.156 52.381 0.00 0.00 0.00 3.67
3336 3469 6.375174 TCGATGAATTCACATCCTTCATTGTT 59.625 34.615 11.07 0.00 42.29 2.83
3489 3622 3.659786 TGTCATGTTTCCACTTCCTACG 58.340 45.455 0.00 0.00 0.00 3.51
3737 3870 4.526970 TGTTCCCTCCAAATATTCTGCTC 58.473 43.478 0.00 0.00 0.00 4.26
4098 4231 9.552114 CACTTCTTGATCATGAATTTTCTACAC 57.448 33.333 20.67 0.00 0.00 2.90
4136 4269 5.482163 TGACAACATCAACTGGAGATACA 57.518 39.130 0.00 0.00 33.02 2.29
4391 4524 6.320672 CAGATATCAACCTTTCTTGAGGCATT 59.679 38.462 5.32 0.00 40.65 3.56
4495 4628 7.391554 TGAGAAAAGACATTATTGAGTTGGAGG 59.608 37.037 0.00 0.00 0.00 4.30
4534 4667 6.448369 TTGAAGAGGAAAAGGGAATAGTCA 57.552 37.500 0.00 0.00 0.00 3.41
4595 4728 7.218773 CACACATTCTTATTTCAACCGCATTAG 59.781 37.037 0.00 0.00 0.00 1.73
4673 4806 5.798132 AGTTCATAGCATTTCAGAGACACA 58.202 37.500 0.00 0.00 0.00 3.72
4809 4942 8.615878 TTCTTTATGTTGCTGTACTGTATTGT 57.384 30.769 1.46 0.00 0.00 2.71
4878 5011 6.528423 CACAAGTACTAACAGAAGGATCTTCG 59.472 42.308 0.00 1.42 32.03 3.79
4916 5049 6.180472 TGAGAATGGATTTACTCCTCAAACC 58.820 40.000 0.00 0.00 45.21 3.27
4946 5079 0.530650 ATGCATACCCTTCGTCTGCG 60.531 55.000 0.00 0.00 45.20 5.18
5087 5220 7.581213 AGATTCAACCATAACAACTTTCACA 57.419 32.000 0.00 0.00 0.00 3.58
5199 5332 6.903883 ATGTTTGCACTATAACTTCGGTAG 57.096 37.500 1.05 0.00 0.00 3.18
5254 5387 6.536941 GGTTAATCTCAGAGGATTTGTCAGTC 59.463 42.308 0.00 0.00 37.20 3.51
5255 5388 7.327214 GTTAATCTCAGAGGATTTGTCAGTCT 58.673 38.462 0.00 0.00 37.20 3.24
5256 5389 5.596836 ATCTCAGAGGATTTGTCAGTCTC 57.403 43.478 0.00 0.00 0.00 3.36
5257 5390 4.671831 TCTCAGAGGATTTGTCAGTCTCT 58.328 43.478 0.00 0.00 35.44 3.10
5258 5391 5.821097 TCTCAGAGGATTTGTCAGTCTCTA 58.179 41.667 0.00 0.00 33.95 2.43
5259 5392 5.885352 TCTCAGAGGATTTGTCAGTCTCTAG 59.115 44.000 0.00 0.00 33.95 2.43
5260 5393 5.821097 TCAGAGGATTTGTCAGTCTCTAGA 58.179 41.667 0.00 0.00 33.95 2.43
5261 5394 6.249192 TCAGAGGATTTGTCAGTCTCTAGAA 58.751 40.000 0.00 0.00 33.95 2.10
5262 5395 6.894654 TCAGAGGATTTGTCAGTCTCTAGAAT 59.105 38.462 0.00 0.00 33.95 2.40
5263 5396 6.979817 CAGAGGATTTGTCAGTCTCTAGAATG 59.020 42.308 1.06 1.06 41.06 2.67
5264 5397 6.667414 AGAGGATTTGTCAGTCTCTAGAATGT 59.333 38.462 7.25 0.00 40.61 2.71
5632 5767 2.031012 TTGTCTGGCCACTCTGCG 59.969 61.111 0.00 0.00 0.00 5.18
5882 6019 5.074115 CCGATCTACTGATCTAGGGTTTCT 58.926 45.833 0.00 0.00 45.10 2.52
5885 6022 5.467668 TCTACTGATCTAGGGTTTCTCCA 57.532 43.478 0.00 0.00 38.11 3.86
5955 6092 0.687354 AGGGAATGACGCAGACAACT 59.313 50.000 0.00 0.00 35.03 3.16
6517 6668 2.042843 AGGGCCCCGAGTGTCTAG 60.043 66.667 21.43 0.00 0.00 2.43
6568 6719 0.472044 TTTGCAGTGTACCTGGAGCA 59.528 50.000 0.00 0.00 42.96 4.26
6588 6739 4.123506 GCACTTTTGCTATCTACTCCCTC 58.876 47.826 0.00 0.00 46.17 4.30
6589 6740 4.698575 CACTTTTGCTATCTACTCCCTCC 58.301 47.826 0.00 0.00 0.00 4.30
6590 6741 3.385111 ACTTTTGCTATCTACTCCCTCCG 59.615 47.826 0.00 0.00 0.00 4.63
6591 6742 2.750141 TTGCTATCTACTCCCTCCGT 57.250 50.000 0.00 0.00 0.00 4.69
6592 6743 2.273538 TGCTATCTACTCCCTCCGTC 57.726 55.000 0.00 0.00 0.00 4.79
6593 6744 1.202903 TGCTATCTACTCCCTCCGTCC 60.203 57.143 0.00 0.00 0.00 4.79
6594 6745 1.887522 GCTATCTACTCCCTCCGTCCC 60.888 61.905 0.00 0.00 0.00 4.46
6595 6746 1.424302 CTATCTACTCCCTCCGTCCCA 59.576 57.143 0.00 0.00 0.00 4.37
6596 6747 0.635009 ATCTACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
6597 6748 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
6598 6749 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
6599 6750 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
6600 6751 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6601 6752 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6602 6753 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6603 6754 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6604 6755 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
6605 6756 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6606 6757 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
6607 6758 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6608 6759 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
6609 6760 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
6610 6761 4.758165 TCCGTCCCAAAATTCTTGTCTTAC 59.242 41.667 0.00 0.00 0.00 2.34
6611 6762 4.517453 CCGTCCCAAAATTCTTGTCTTACA 59.483 41.667 0.00 0.00 0.00 2.41
6612 6763 5.183140 CCGTCCCAAAATTCTTGTCTTACAT 59.817 40.000 0.00 0.00 0.00 2.29
6613 6764 6.294508 CCGTCCCAAAATTCTTGTCTTACATT 60.295 38.462 0.00 0.00 0.00 2.71
6614 6765 7.145323 CGTCCCAAAATTCTTGTCTTACATTT 58.855 34.615 0.00 0.00 0.00 2.32
6615 6766 7.114811 CGTCCCAAAATTCTTGTCTTACATTTG 59.885 37.037 0.00 0.00 0.00 2.32
6616 6767 7.926018 GTCCCAAAATTCTTGTCTTACATTTGT 59.074 33.333 0.00 0.00 27.14 2.83
6617 6768 8.141268 TCCCAAAATTCTTGTCTTACATTTGTC 58.859 33.333 0.00 0.00 27.14 3.18
6618 6769 8.143835 CCCAAAATTCTTGTCTTACATTTGTCT 58.856 33.333 0.00 0.00 27.14 3.41
6625 6776 9.569167 TTCTTGTCTTACATTTGTCTAGATACG 57.431 33.333 0.00 0.00 0.00 3.06
6626 6777 8.188799 TCTTGTCTTACATTTGTCTAGATACGG 58.811 37.037 0.00 0.00 0.00 4.02
6627 6778 7.634671 TGTCTTACATTTGTCTAGATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
6628 6779 8.234136 TGTCTTACATTTGTCTAGATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
6629 6780 8.135529 TGTCTTACATTTGTCTAGATACGGATG 58.864 37.037 0.00 0.85 0.00 3.51
6630 6781 8.136165 GTCTTACATTTGTCTAGATACGGATGT 58.864 37.037 13.29 13.29 34.19 3.06
6631 6782 9.346005 TCTTACATTTGTCTAGATACGGATGTA 57.654 33.333 11.94 11.94 32.86 2.29
6662 6813 7.539712 ACTAAAATGTGACTTGATACATCCG 57.460 36.000 0.00 0.00 36.56 4.18
6663 6814 7.103641 ACTAAAATGTGACTTGATACATCCGT 58.896 34.615 0.00 0.00 36.56 4.69
6664 6815 8.255206 ACTAAAATGTGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 36.56 4.02
6665 6816 9.261180 CTAAAATGTGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
6681 6832 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
6682 6833 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
6683 6834 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
6684 6835 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
6685 6836 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
6686 6837 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
6697 6848 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
6698 6849 8.833231 AATCTAAGACAAGAATTTTGAGACGA 57.167 30.769 0.00 0.00 0.00 4.20
6699 6850 7.875316 TCTAAGACAAGAATTTTGAGACGAG 57.125 36.000 0.00 0.00 0.00 4.18
6700 6851 7.658261 TCTAAGACAAGAATTTTGAGACGAGA 58.342 34.615 0.00 0.00 0.00 4.04
6811 6962 9.226606 CACCAACTGTTTATTCTATTTCACCTA 57.773 33.333 0.00 0.00 0.00 3.08
6812 6963 9.802039 ACCAACTGTTTATTCTATTTCACCTAA 57.198 29.630 0.00 0.00 0.00 2.69
6835 6986 4.848357 ACAAGATAATAAGGTGCTGTGCT 58.152 39.130 0.00 0.00 0.00 4.40
6852 7003 5.163281 TGTGCTAATTGGGCAATCAAAAT 57.837 34.783 9.02 0.00 41.54 1.82
6912 7063 5.355350 AGCTTCAATCCAGCATGTACTAAAC 59.645 40.000 0.00 0.00 39.99 2.01
6961 7112 7.894376 ATTAAGATTTGCATTCCACAACTTG 57.106 32.000 0.00 0.00 0.00 3.16
7065 7216 6.257193 GGCAAGTTCATTTCATGGATTGATTC 59.743 38.462 0.00 0.00 33.34 2.52
7245 7397 2.583024 TCCTGTGGCACAATTGATCA 57.417 45.000 22.31 4.34 44.16 2.92
7668 7820 3.454447 TCAGTCGGTAATGGATGGTTCAT 59.546 43.478 0.00 0.00 0.00 2.57
7952 8106 5.935206 TGAAATTACTGTATCGCCTGACAAA 59.065 36.000 0.00 0.00 0.00 2.83
7978 8132 8.598041 ACCATTCTACTTTCTACTTGTCTTCAT 58.402 33.333 0.00 0.00 0.00 2.57
8061 8215 8.862325 TGTTCACAATATTATTTGACTCCAGT 57.138 30.769 0.00 0.00 0.00 4.00
8062 8216 8.729756 TGTTCACAATATTATTTGACTCCAGTG 58.270 33.333 0.00 0.00 0.00 3.66
8063 8217 8.730680 GTTCACAATATTATTTGACTCCAGTGT 58.269 33.333 0.00 0.00 0.00 3.55
8064 8218 8.267620 TCACAATATTATTTGACTCCAGTGTG 57.732 34.615 0.00 0.00 34.28 3.82
8065 8219 7.882791 TCACAATATTATTTGACTCCAGTGTGT 59.117 33.333 0.00 0.00 34.54 3.72
8066 8220 8.514594 CACAATATTATTTGACTCCAGTGTGTT 58.485 33.333 0.00 0.00 0.00 3.32
8067 8221 8.514594 ACAATATTATTTGACTCCAGTGTGTTG 58.485 33.333 0.00 0.00 0.00 3.33
8068 8222 8.514594 CAATATTATTTGACTCCAGTGTGTTGT 58.485 33.333 0.00 0.00 0.00 3.32
8069 8223 6.959639 ATTATTTGACTCCAGTGTGTTGTT 57.040 33.333 0.00 0.00 0.00 2.83
8070 8224 4.900635 ATTTGACTCCAGTGTGTTGTTC 57.099 40.909 0.00 0.00 0.00 3.18
8071 8225 2.325583 TGACTCCAGTGTGTTGTTCC 57.674 50.000 0.00 0.00 0.00 3.62
8072 8226 1.134220 TGACTCCAGTGTGTTGTTCCC 60.134 52.381 0.00 0.00 0.00 3.97
8073 8227 0.916086 ACTCCAGTGTGTTGTTCCCA 59.084 50.000 0.00 0.00 0.00 4.37
8074 8228 1.134098 ACTCCAGTGTGTTGTTCCCAG 60.134 52.381 0.00 0.00 0.00 4.45
8075 8229 0.916086 TCCAGTGTGTTGTTCCCAGT 59.084 50.000 0.00 0.00 0.00 4.00
8076 8230 2.104111 CTCCAGTGTGTTGTTCCCAGTA 59.896 50.000 0.00 0.00 0.00 2.74
8077 8231 2.708861 TCCAGTGTGTTGTTCCCAGTAT 59.291 45.455 0.00 0.00 0.00 2.12
8078 8232 3.137544 TCCAGTGTGTTGTTCCCAGTATT 59.862 43.478 0.00 0.00 0.00 1.89
8152 8313 9.412460 TGCTGACAGGAAATTAATATCAAAGAT 57.588 29.630 4.26 0.00 0.00 2.40
8171 8332 8.859090 TCAAAGATGTACATTTGTTTCCAGATT 58.141 29.630 17.32 0.00 37.60 2.40
8354 8516 9.774742 GAACAATTCAGTCACAAATTATACTCC 57.225 33.333 0.00 0.00 0.00 3.85
8355 8517 8.281212 ACAATTCAGTCACAAATTATACTCCC 57.719 34.615 0.00 0.00 0.00 4.30
8356 8518 8.109634 ACAATTCAGTCACAAATTATACTCCCT 58.890 33.333 0.00 0.00 0.00 4.20
8357 8519 8.616076 CAATTCAGTCACAAATTATACTCCCTC 58.384 37.037 0.00 0.00 0.00 4.30
8358 8520 6.235231 TCAGTCACAAATTATACTCCCTCC 57.765 41.667 0.00 0.00 0.00 4.30
8359 8521 5.050490 CAGTCACAAATTATACTCCCTCCG 58.950 45.833 0.00 0.00 0.00 4.63
8360 8522 4.715297 AGTCACAAATTATACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
8361 8523 5.189145 AGTCACAAATTATACTCCCTCCGTT 59.811 40.000 0.00 0.00 0.00 4.44
8362 8524 5.522824 GTCACAAATTATACTCCCTCCGTTC 59.477 44.000 0.00 0.00 0.00 3.95
8363 8525 4.814771 CACAAATTATACTCCCTCCGTTCC 59.185 45.833 0.00 0.00 0.00 3.62
8364 8526 4.720273 ACAAATTATACTCCCTCCGTTCCT 59.280 41.667 0.00 0.00 0.00 3.36
8365 8527 5.901276 ACAAATTATACTCCCTCCGTTCCTA 59.099 40.000 0.00 0.00 0.00 2.94
8366 8528 6.384886 ACAAATTATACTCCCTCCGTTCCTAA 59.615 38.462 0.00 0.00 0.00 2.69
8367 8529 7.092757 ACAAATTATACTCCCTCCGTTCCTAAA 60.093 37.037 0.00 0.00 0.00 1.85
8368 8530 7.628501 AATTATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
8369 8531 8.731591 AATTATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
8370 8532 8.912614 ATTATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
8372 8534 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
8373 8535 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
8374 8536 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
8375 8537 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
8376 8538 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
8377 8539 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
8378 8540 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
8379 8541 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
8380 8542 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
8396 8558 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
8397 8559 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
8398 8560 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
8399 8561 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
8400 8562 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
8401 8563 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
8402 8564 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
8403 8565 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
8404 8566 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
8405 8567 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
8406 8568 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
8407 8569 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
8408 8570 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
8409 8571 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
8410 8572 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
8412 8574 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
8413 8575 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
8414 8576 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
8415 8577 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
8416 8578 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
8417 8579 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
8418 8580 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
8419 8581 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
8420 8582 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
8421 8583 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
8422 8584 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
8423 8585 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
8424 8586 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
8425 8587 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
8426 8588 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
8430 8592 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
8431 8593 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
8441 8603 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
8453 8615 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
8454 8616 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
8455 8617 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
8456 8618 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
8457 8619 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
8458 8620 9.031360 GTAGATTCACTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
8459 8621 8.668510 AGATTCACTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
8460 8622 9.764363 AGATTCACTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
8462 8624 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
8463 8625 8.575565 TCACTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
8464 8626 7.652105 TCACTCATTTTGCTTCGTATATAGTCC 59.348 37.037 0.00 0.00 0.00 3.85
8465 8627 7.438160 CACTCATTTTGCTTCGTATATAGTCCA 59.562 37.037 0.00 0.00 0.00 4.02
8466 8628 8.150945 ACTCATTTTGCTTCGTATATAGTCCAT 58.849 33.333 0.00 0.00 0.00 3.41
8467 8629 9.639601 CTCATTTTGCTTCGTATATAGTCCATA 57.360 33.333 0.00 0.00 0.00 2.74
8468 8630 9.639601 TCATTTTGCTTCGTATATAGTCCATAG 57.360 33.333 0.00 0.00 0.00 2.23
8469 8631 9.424319 CATTTTGCTTCGTATATAGTCCATAGT 57.576 33.333 0.00 0.00 0.00 2.12
8472 8634 7.860918 TGCTTCGTATATAGTCCATAGTAGG 57.139 40.000 0.00 0.00 0.00 3.18
8473 8635 7.627311 TGCTTCGTATATAGTCCATAGTAGGA 58.373 38.462 0.00 0.00 34.64 2.94
8474 8636 8.272889 TGCTTCGTATATAGTCCATAGTAGGAT 58.727 37.037 0.00 0.00 40.42 3.24
8475 8637 8.776470 GCTTCGTATATAGTCCATAGTAGGATC 58.224 40.741 0.00 0.00 40.42 3.36
8478 8640 9.436866 TCGTATATAGTCCATAGTAGGATCTCT 57.563 37.037 0.00 0.00 40.42 3.10
8497 8659 9.535878 GGATCTCTACAAAGACTTGTATTTAGG 57.464 37.037 0.00 0.00 44.95 2.69
8501 8663 9.930693 CTCTACAAAGACTTGTATTTAGGAAGT 57.069 33.333 0.00 0.00 44.95 3.01
8502 8664 9.706691 TCTACAAAGACTTGTATTTAGGAAGTG 57.293 33.333 0.00 0.00 44.95 3.16
8503 8665 9.706691 CTACAAAGACTTGTATTTAGGAAGTGA 57.293 33.333 0.00 0.00 44.95 3.41
8504 8666 8.608844 ACAAAGACTTGTATTTAGGAAGTGAG 57.391 34.615 0.00 0.00 44.14 3.51
8505 8667 7.661847 ACAAAGACTTGTATTTAGGAAGTGAGG 59.338 37.037 0.00 0.00 44.14 3.86
8506 8668 6.301169 AGACTTGTATTTAGGAAGTGAGGG 57.699 41.667 0.00 0.00 30.01 4.30
8507 8669 6.023603 AGACTTGTATTTAGGAAGTGAGGGA 58.976 40.000 0.00 0.00 30.01 4.20
8508 8670 6.155393 AGACTTGTATTTAGGAAGTGAGGGAG 59.845 42.308 0.00 0.00 30.01 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.901591 ATCACCAACAACTCCAGCTG 58.098 50.000 6.78 6.78 0.00 4.24
104 105 1.761244 CGCTGGCGCATCAAATCGTA 61.761 55.000 10.83 0.00 35.30 3.43
119 120 3.009723 ACACATCTAAAATCACCCGCTG 58.990 45.455 0.00 0.00 0.00 5.18
124 125 9.394477 GTTACTCAAAACACATCTAAAATCACC 57.606 33.333 0.00 0.00 0.00 4.02
152 153 2.415512 GACAAGCAGGTATTCACGAACC 59.584 50.000 0.00 0.00 35.91 3.62
174 185 6.475727 CGTTCAGAGAATGGTGAATATTACGT 59.524 38.462 0.00 0.00 35.22 3.57
227 324 5.131594 ACTACCGTCTTAAACTCAGTTCC 57.868 43.478 0.00 0.00 0.00 3.62
241 338 5.718557 GCACGAACGTAAATTTACTACCGTC 60.719 44.000 22.57 16.57 31.95 4.79
243 340 4.324402 AGCACGAACGTAAATTTACTACCG 59.676 41.667 22.57 21.59 0.00 4.02
249 346 5.849357 ACATGAGCACGAACGTAAATTTA 57.151 34.783 0.00 0.00 0.00 1.40
256 353 0.586319 CCAAACATGAGCACGAACGT 59.414 50.000 0.00 0.00 0.00 3.99
257 354 0.586319 ACCAAACATGAGCACGAACG 59.414 50.000 0.00 0.00 0.00 3.95
258 355 2.774439 AACCAAACATGAGCACGAAC 57.226 45.000 0.00 0.00 0.00 3.95
259 356 2.425312 ACAAACCAAACATGAGCACGAA 59.575 40.909 0.00 0.00 0.00 3.85
260 357 2.020720 ACAAACCAAACATGAGCACGA 58.979 42.857 0.00 0.00 0.00 4.35
261 358 2.490328 ACAAACCAAACATGAGCACG 57.510 45.000 0.00 0.00 0.00 5.34
262 359 3.555547 GGAAACAAACCAAACATGAGCAC 59.444 43.478 0.00 0.00 0.00 4.40
263 360 3.196469 TGGAAACAAACCAAACATGAGCA 59.804 39.130 0.00 0.00 37.44 4.26
264 361 3.791245 TGGAAACAAACCAAACATGAGC 58.209 40.909 0.00 0.00 37.44 4.26
434 531 1.605738 ACCTAGAGTTGTCGCCCGT 60.606 57.895 0.00 0.00 0.00 5.28
517 614 7.442062 CAGCCATGAAAAAGTTAAGACCAAATT 59.558 33.333 0.00 0.00 0.00 1.82
541 639 6.446781 AGTGCCATCTCAATCATAAAACAG 57.553 37.500 0.00 0.00 0.00 3.16
800 898 3.153919 TGCCTAACTAAAGCAAAGTGGG 58.846 45.455 0.00 0.00 32.56 4.61
899 997 1.680338 ATAAAATGCGCCTCCACTCC 58.320 50.000 4.18 0.00 0.00 3.85
954 1052 4.288366 TGACCCACAAATCCTGAGATTACA 59.712 41.667 0.00 0.00 42.03 2.41
1282 1380 7.681939 TGCCTTAAGAGAACAAAATAATCGT 57.318 32.000 3.36 0.00 0.00 3.73
1293 1391 2.200373 TGCCCTTGCCTTAAGAGAAC 57.800 50.000 3.36 0.00 38.76 3.01
1493 1591 1.598924 GCTCTGAAACTTGTGCAGTGC 60.599 52.381 8.58 8.58 40.45 4.40
1572 1687 1.822506 GGTACCAAAGCAGAACTCCC 58.177 55.000 7.15 0.00 0.00 4.30
2069 2193 4.266502 GCACACAAAACTCGCAAATAAACA 59.733 37.500 0.00 0.00 0.00 2.83
2394 2525 3.243401 CGCTAGTTCCAAAAGGTTTGCTT 60.243 43.478 0.00 0.00 0.00 3.91
2415 2546 5.561499 CAGACGATTTGTTTCAAGACATTCG 59.439 40.000 0.00 8.41 39.45 3.34
2475 2606 2.624838 GCATATACCTGGCAAAGCACAT 59.375 45.455 0.00 0.00 0.00 3.21
2961 3092 8.761689 AGGTTGGCACATGAATATTTCTAAATT 58.238 29.630 0.00 0.00 39.30 1.82
2975 3106 1.300971 CCGAGTGAGGTTGGCACATG 61.301 60.000 0.00 0.00 39.30 3.21
3034 3165 5.067674 AGCAATCATATATTGTTGCCGTTGT 59.932 36.000 20.31 6.50 40.33 3.32
3106 3237 6.620678 ACATATAATTGCAAGTGTGACAACC 58.379 36.000 10.14 0.00 0.00 3.77
3109 3240 8.575589 AGAAAACATATAATTGCAAGTGTGACA 58.424 29.630 10.14 0.00 0.00 3.58
3170 3301 7.916914 TGCAACAGATATGATCATCTAATGG 57.083 36.000 12.53 1.22 33.41 3.16
3183 3314 6.704289 AAATGTAGCACATGCAACAGATAT 57.296 33.333 6.64 0.00 45.16 1.63
3232 3365 5.316987 ACCGAGAAAGTTTCTGGATCAAAT 58.683 37.500 27.08 11.24 40.87 2.32
3357 3490 4.349636 TCAGTTACTCCCTGGAAATCAACA 59.650 41.667 0.00 0.00 0.00 3.33
3360 3493 3.263425 GGTCAGTTACTCCCTGGAAATCA 59.737 47.826 0.00 0.00 0.00 2.57
3489 3622 1.214589 CTGCACCATGCTGGAAAGC 59.785 57.895 8.91 9.49 45.31 3.51
3737 3870 6.280643 TCTATAAACTGGAACGTGATGATGG 58.719 40.000 0.00 0.00 0.00 3.51
4136 4269 6.349611 GGACTTTCATACAATGCTGAATGTGT 60.350 38.462 16.63 9.37 38.87 3.72
4295 4428 4.937620 ACTCTGCAGTTACACATAACATGG 59.062 41.667 14.67 0.00 42.83 3.66
4412 4545 8.100164 ACTTCCTAATCTCTTCCTCTTCAAAAG 58.900 37.037 0.00 0.00 0.00 2.27
4524 4657 4.142609 TCTGACAGCATTGACTATTCCC 57.857 45.455 0.00 0.00 0.00 3.97
4534 4667 4.280174 AGACATTTGCTTTCTGACAGCATT 59.720 37.500 18.21 7.49 46.62 3.56
4673 4806 7.977853 GCTTGTTCAGATCATATCCAAAAACAT 59.022 33.333 0.00 0.00 0.00 2.71
4878 5011 3.456280 CATTCTCAGGACAAGAGCTAGC 58.544 50.000 6.62 6.62 33.15 3.42
4916 5049 6.144854 CGAAGGGTATGCATTAATGATTGTG 58.855 40.000 19.73 0.00 0.00 3.33
4946 5079 3.015327 AGAAGAGCATGTTTGATCAGGC 58.985 45.455 0.00 0.00 40.79 4.85
5087 5220 7.072263 CAGAAATATCTGTACCTGATTCCCT 57.928 40.000 4.20 0.00 46.60 4.20
5164 5297 9.529325 TTATAGTGCAAACATACTAGTGACATC 57.471 33.333 5.39 0.00 33.32 3.06
5199 5332 5.122396 CCAAGTCACCATTAGTTTCTAGTGC 59.878 44.000 0.00 0.00 0.00 4.40
5632 5767 2.280186 GTCATGGGGGCGTCGATC 60.280 66.667 0.00 0.00 0.00 3.69
5882 6019 1.003646 ACTCTCTGCTACCTCCTGGA 58.996 55.000 0.00 0.00 37.04 3.86
5885 6022 0.686112 GCCACTCTCTGCTACCTCCT 60.686 60.000 0.00 0.00 0.00 3.69
5931 6068 1.480954 GTCTGCGTCATTCCCTTCCTA 59.519 52.381 0.00 0.00 0.00 2.94
5942 6079 1.954146 GGCGAAGTTGTCTGCGTCA 60.954 57.895 0.00 0.00 45.70 4.35
6297 6445 4.235762 GGCGGATCTAGGCGGCAA 62.236 66.667 13.08 0.00 33.79 4.52
6437 6588 2.286197 GGGCCTCCAACCCTAGGT 60.286 66.667 8.29 0.00 44.68 3.08
6498 6649 3.674050 TAGACACTCGGGGCCCTCC 62.674 68.421 24.38 4.51 0.00 4.30
6499 6650 2.043248 TAGACACTCGGGGCCCTC 60.043 66.667 24.38 10.42 0.00 4.30
6500 6651 2.042843 CTAGACACTCGGGGCCCT 60.043 66.667 24.38 0.00 0.00 5.19
6501 6652 1.049289 ATTCTAGACACTCGGGGCCC 61.049 60.000 15.76 15.76 0.00 5.80
6502 6653 0.105039 CATTCTAGACACTCGGGGCC 59.895 60.000 0.00 0.00 0.00 5.80
6503 6654 0.824759 ACATTCTAGACACTCGGGGC 59.175 55.000 0.00 0.00 0.00 5.80
6504 6655 1.825474 ACACATTCTAGACACTCGGGG 59.175 52.381 0.00 0.00 0.00 5.73
6505 6656 3.945921 TCTACACATTCTAGACACTCGGG 59.054 47.826 0.00 0.00 0.00 5.14
6506 6657 4.636648 ACTCTACACATTCTAGACACTCGG 59.363 45.833 0.00 0.00 0.00 4.63
6507 6658 5.447954 CCACTCTACACATTCTAGACACTCG 60.448 48.000 0.00 0.00 0.00 4.18
6508 6659 5.416326 ACCACTCTACACATTCTAGACACTC 59.584 44.000 0.00 0.00 0.00 3.51
6509 6660 5.184096 CACCACTCTACACATTCTAGACACT 59.816 44.000 0.00 0.00 0.00 3.55
6510 6661 5.047943 ACACCACTCTACACATTCTAGACAC 60.048 44.000 0.00 0.00 0.00 3.67
6511 6662 5.077564 ACACCACTCTACACATTCTAGACA 58.922 41.667 0.00 0.00 0.00 3.41
6517 6668 9.431887 TCTAAAATAACACCACTCTACACATTC 57.568 33.333 0.00 0.00 0.00 2.67
6541 6692 5.003804 CCAGGTACACTGCAAATTAAGTCT 58.996 41.667 0.00 0.00 46.14 3.24
6568 6719 3.385111 CGGAGGGAGTAGATAGCAAAAGT 59.615 47.826 0.00 0.00 0.00 2.66
6582 6733 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
6583 6734 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6584 6735 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6586 6737 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6588 6739 4.517453 TGTAAGACAAGAATTTTGGGACGG 59.483 41.667 0.00 0.00 0.00 4.79
6589 6740 5.682943 TGTAAGACAAGAATTTTGGGACG 57.317 39.130 5.68 0.00 0.00 4.79
6590 6741 7.926018 ACAAATGTAAGACAAGAATTTTGGGAC 59.074 33.333 7.26 0.00 31.16 4.46
6591 6742 8.017418 ACAAATGTAAGACAAGAATTTTGGGA 57.983 30.769 7.26 0.00 31.16 4.37
6592 6743 8.143835 AGACAAATGTAAGACAAGAATTTTGGG 58.856 33.333 7.26 0.00 31.16 4.12
6599 6750 9.569167 CGTATCTAGACAAATGTAAGACAAGAA 57.431 33.333 0.00 0.00 0.00 2.52
6600 6751 8.188799 CCGTATCTAGACAAATGTAAGACAAGA 58.811 37.037 0.00 0.00 0.00 3.02
6601 6752 8.188799 TCCGTATCTAGACAAATGTAAGACAAG 58.811 37.037 0.00 0.00 0.00 3.16
6602 6753 8.058667 TCCGTATCTAGACAAATGTAAGACAA 57.941 34.615 0.00 0.00 0.00 3.18
6603 6754 7.634671 TCCGTATCTAGACAAATGTAAGACA 57.365 36.000 0.00 0.00 0.00 3.41
6604 6755 8.136165 ACATCCGTATCTAGACAAATGTAAGAC 58.864 37.037 0.00 0.00 0.00 3.01
6605 6756 8.234136 ACATCCGTATCTAGACAAATGTAAGA 57.766 34.615 0.00 1.82 0.00 2.10
6636 6787 9.261180 CGGATGTATCAAGTCACATTTTAGTAT 57.739 33.333 0.00 0.00 35.55 2.12
6637 6788 8.255206 ACGGATGTATCAAGTCACATTTTAGTA 58.745 33.333 0.00 0.00 35.55 1.82
6638 6789 7.103641 ACGGATGTATCAAGTCACATTTTAGT 58.896 34.615 0.00 0.00 35.55 2.24
6639 6790 7.539712 ACGGATGTATCAAGTCACATTTTAG 57.460 36.000 0.00 0.00 35.55 1.85
6655 6806 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
6656 6807 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
6657 6808 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
6658 6809 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
6659 6810 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
6660 6811 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
6671 6822 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
6672 6823 9.273016 TCGTCTCAAAATTCTTGTCTTAGATTT 57.727 29.630 0.00 0.00 0.00 2.17
6673 6824 8.833231 TCGTCTCAAAATTCTTGTCTTAGATT 57.167 30.769 0.00 0.00 0.00 2.40
6674 6825 8.307483 TCTCGTCTCAAAATTCTTGTCTTAGAT 58.693 33.333 0.00 0.00 0.00 1.98
6675 6826 7.658261 TCTCGTCTCAAAATTCTTGTCTTAGA 58.342 34.615 0.00 0.00 0.00 2.10
6676 6827 7.875316 TCTCGTCTCAAAATTCTTGTCTTAG 57.125 36.000 0.00 0.00 0.00 2.18
6677 6828 8.833231 ATTCTCGTCTCAAAATTCTTGTCTTA 57.167 30.769 0.00 0.00 0.00 2.10
6678 6829 7.736447 ATTCTCGTCTCAAAATTCTTGTCTT 57.264 32.000 0.00 0.00 0.00 3.01
6679 6830 7.442364 TGAATTCTCGTCTCAAAATTCTTGTCT 59.558 33.333 7.05 0.00 38.39 3.41
6680 6831 7.576236 TGAATTCTCGTCTCAAAATTCTTGTC 58.424 34.615 7.05 0.00 38.39 3.18
6681 6832 7.227512 ACTGAATTCTCGTCTCAAAATTCTTGT 59.772 33.333 7.05 4.93 38.39 3.16
6682 6833 7.579726 ACTGAATTCTCGTCTCAAAATTCTTG 58.420 34.615 7.05 4.47 38.39 3.02
6683 6834 7.736447 ACTGAATTCTCGTCTCAAAATTCTT 57.264 32.000 7.05 0.00 38.39 2.52
6684 6835 7.579726 CAACTGAATTCTCGTCTCAAAATTCT 58.420 34.615 7.05 0.00 38.39 2.40
6685 6836 6.304208 GCAACTGAATTCTCGTCTCAAAATTC 59.696 38.462 7.05 0.00 38.18 2.17
6686 6837 6.145535 GCAACTGAATTCTCGTCTCAAAATT 58.854 36.000 7.05 0.00 0.00 1.82
6687 6838 5.615544 CGCAACTGAATTCTCGTCTCAAAAT 60.616 40.000 7.05 0.00 0.00 1.82
6688 6839 4.318760 CGCAACTGAATTCTCGTCTCAAAA 60.319 41.667 7.05 0.00 0.00 2.44
6689 6840 3.184379 CGCAACTGAATTCTCGTCTCAAA 59.816 43.478 7.05 0.00 0.00 2.69
6690 6841 2.731451 CGCAACTGAATTCTCGTCTCAA 59.269 45.455 7.05 0.00 0.00 3.02
6691 6842 2.030274 TCGCAACTGAATTCTCGTCTCA 60.030 45.455 7.05 0.00 0.00 3.27
6692 6843 2.596452 TCGCAACTGAATTCTCGTCTC 58.404 47.619 7.05 0.00 0.00 3.36
6693 6844 2.724977 TCGCAACTGAATTCTCGTCT 57.275 45.000 7.05 0.00 0.00 4.18
6694 6845 3.060873 GCTATCGCAACTGAATTCTCGTC 60.061 47.826 7.05 0.00 35.78 4.20
6695 6846 2.860735 GCTATCGCAACTGAATTCTCGT 59.139 45.455 7.05 1.14 35.78 4.18
6696 6847 2.219674 GGCTATCGCAACTGAATTCTCG 59.780 50.000 7.05 0.49 38.10 4.04
6697 6848 3.462021 AGGCTATCGCAACTGAATTCTC 58.538 45.455 7.05 0.00 38.10 2.87
6698 6849 3.550437 AGGCTATCGCAACTGAATTCT 57.450 42.857 7.05 0.00 38.10 2.40
6699 6850 3.790123 GCAAGGCTATCGCAACTGAATTC 60.790 47.826 0.00 0.00 38.10 2.17
6700 6851 2.098117 GCAAGGCTATCGCAACTGAATT 59.902 45.455 0.00 0.00 38.10 2.17
6811 6962 5.711976 AGCACAGCACCTTATTATCTTGTTT 59.288 36.000 0.00 0.00 0.00 2.83
6812 6963 5.256474 AGCACAGCACCTTATTATCTTGTT 58.744 37.500 0.00 0.00 0.00 2.83
6816 6967 6.488006 CCAATTAGCACAGCACCTTATTATCT 59.512 38.462 0.00 0.00 0.00 1.98
6821 6972 3.290710 CCCAATTAGCACAGCACCTTAT 58.709 45.455 0.00 0.00 0.00 1.73
6835 6986 8.088463 AGGTCATAATTTTGATTGCCCAATTA 57.912 30.769 1.79 0.00 0.00 1.40
6912 7063 8.433421 TTTACTCTTTGAGGTTCAGTAAACAG 57.567 34.615 0.00 0.00 39.81 3.16
6941 7092 4.942761 ACAAGTTGTGGAATGCAAATCT 57.057 36.364 7.96 0.00 0.00 2.40
6961 7112 8.078596 GTCCCTTCAGATTTATGCAATGATTAC 58.921 37.037 0.00 0.00 0.00 1.89
7245 7397 5.846164 TGTCTAGAATGATGGGTATGGACAT 59.154 40.000 0.00 0.00 0.00 3.06
7668 7820 1.472480 GCCTGCGGAAAGAATTGCTTA 59.528 47.619 0.00 0.00 35.24 3.09
7942 8094 2.699954 AGTAGAATGGTTTGTCAGGCG 58.300 47.619 0.00 0.00 0.00 5.52
7943 8095 4.762251 AGAAAGTAGAATGGTTTGTCAGGC 59.238 41.667 0.00 0.00 0.00 4.85
7952 8106 7.963532 TGAAGACAAGTAGAAAGTAGAATGGT 58.036 34.615 0.00 0.00 0.00 3.55
7978 8132 7.153217 TGATGACGAGAGATTACACAAAGTA 57.847 36.000 0.00 0.00 0.00 2.24
8041 8195 8.514594 CAACACACTGGAGTCAAATAATATTGT 58.485 33.333 0.00 0.00 0.00 2.71
8049 8203 3.632145 GGAACAACACACTGGAGTCAAAT 59.368 43.478 0.00 0.00 0.00 2.32
8050 8204 3.013921 GGAACAACACACTGGAGTCAAA 58.986 45.455 0.00 0.00 0.00 2.69
8051 8205 2.639065 GGAACAACACACTGGAGTCAA 58.361 47.619 0.00 0.00 0.00 3.18
8052 8206 1.134220 GGGAACAACACACTGGAGTCA 60.134 52.381 0.00 0.00 0.00 3.41
8053 8207 1.134220 TGGGAACAACACACTGGAGTC 60.134 52.381 0.00 0.00 37.44 3.36
8054 8208 0.916086 TGGGAACAACACACTGGAGT 59.084 50.000 0.00 0.00 37.44 3.85
8055 8209 1.134098 ACTGGGAACAACACACTGGAG 60.134 52.381 0.00 0.00 42.06 3.86
8056 8210 0.916086 ACTGGGAACAACACACTGGA 59.084 50.000 0.00 0.00 42.06 3.86
8057 8211 2.631160 TACTGGGAACAACACACTGG 57.369 50.000 0.00 0.00 42.06 4.00
8058 8212 6.817765 AATAATACTGGGAACAACACACTG 57.182 37.500 0.00 0.00 42.06 3.66
8059 8213 6.775629 ACAAATAATACTGGGAACAACACACT 59.224 34.615 0.00 0.00 42.06 3.55
8060 8214 6.977213 ACAAATAATACTGGGAACAACACAC 58.023 36.000 0.00 0.00 42.06 3.82
8061 8215 7.001674 AGACAAATAATACTGGGAACAACACA 58.998 34.615 0.00 0.00 42.06 3.72
8062 8216 7.361799 GGAGACAAATAATACTGGGAACAACAC 60.362 40.741 0.00 0.00 42.06 3.32
8063 8217 6.657541 GGAGACAAATAATACTGGGAACAACA 59.342 38.462 0.00 0.00 42.06 3.33
8064 8218 6.657541 TGGAGACAAATAATACTGGGAACAAC 59.342 38.462 0.00 0.00 37.35 3.32
8065 8219 6.785076 TGGAGACAAATAATACTGGGAACAA 58.215 36.000 0.00 0.00 37.35 2.83
8066 8220 6.012858 ACTGGAGACAAATAATACTGGGAACA 60.013 38.462 0.00 0.00 42.06 3.18
8067 8221 6.316390 CACTGGAGACAAATAATACTGGGAAC 59.684 42.308 0.00 0.00 42.06 3.62
8068 8222 6.012858 ACACTGGAGACAAATAATACTGGGAA 60.013 38.462 0.00 0.00 42.06 3.97
8069 8223 5.487488 ACACTGGAGACAAATAATACTGGGA 59.513 40.000 0.00 0.00 42.06 4.37
8070 8224 5.586243 CACACTGGAGACAAATAATACTGGG 59.414 44.000 0.00 0.00 42.06 4.45
8071 8225 6.173339 ACACACTGGAGACAAATAATACTGG 58.827 40.000 0.00 0.00 42.06 4.00
8072 8226 7.672983 AACACACTGGAGACAAATAATACTG 57.327 36.000 0.00 0.00 42.06 2.74
8073 8227 9.959721 ATAAACACACTGGAGACAAATAATACT 57.040 29.630 0.00 0.00 42.06 2.12
8077 8231 9.787435 AGTTATAAACACACTGGAGACAAATAA 57.213 29.630 0.00 0.00 42.06 1.40
8078 8232 9.787435 AAGTTATAAACACACTGGAGACAAATA 57.213 29.630 0.00 0.00 42.06 1.40
8115 8276 7.649533 ATTTCCTGTCAGCATCAATCAATTA 57.350 32.000 0.00 0.00 0.00 1.40
8171 8332 9.719355 TTTCTAGTCAGCATCAAGTATTAACAA 57.281 29.630 0.00 0.00 0.00 2.83
8347 8509 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
8349 8511 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
8350 8512 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
8351 8513 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
8352 8514 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
8353 8515 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
8354 8516 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
8355 8517 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
8370 8532 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
8371 8533 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
8372 8534 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
8373 8535 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
8374 8536 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
8375 8537 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
8376 8538 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
8377 8539 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
8378 8540 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
8379 8541 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
8380 8542 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
8381 8543 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
8382 8544 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
8383 8545 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
8384 8546 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
8385 8547 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
8386 8548 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
8387 8549 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
8388 8550 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
8389 8551 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
8390 8552 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
8391 8553 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
8392 8554 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
8393 8555 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
8394 8556 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
8395 8557 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
8396 8558 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
8397 8559 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
8398 8560 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
8399 8561 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
8404 8566 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
8405 8567 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
8415 8577 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
8416 8578 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
8417 8579 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
8430 8592 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
8431 8593 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
8432 8594 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
8433 8595 9.764363 ATATACGAAGCAAAATGAGTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
8434 8596 6.992063 ATACGAAGCAAAATGAGTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
8436 8598 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
8437 8599 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
8438 8600 7.652105 GGACTATATACGAAGCAAAATGAGTGA 59.348 37.037 0.00 0.00 0.00 3.41
8439 8601 7.438160 TGGACTATATACGAAGCAAAATGAGTG 59.562 37.037 0.00 0.00 0.00 3.51
8440 8602 7.497595 TGGACTATATACGAAGCAAAATGAGT 58.502 34.615 0.00 0.00 0.00 3.41
8441 8603 7.946655 TGGACTATATACGAAGCAAAATGAG 57.053 36.000 0.00 0.00 0.00 2.90
8442 8604 9.639601 CTATGGACTATATACGAAGCAAAATGA 57.360 33.333 0.00 0.00 0.00 2.57
8443 8605 9.424319 ACTATGGACTATATACGAAGCAAAATG 57.576 33.333 0.00 0.00 0.00 2.32
8446 8608 8.737175 CCTACTATGGACTATATACGAAGCAAA 58.263 37.037 0.00 0.00 0.00 3.68
8447 8609 8.105197 TCCTACTATGGACTATATACGAAGCAA 58.895 37.037 0.00 0.00 0.00 3.91
8448 8610 7.627311 TCCTACTATGGACTATATACGAAGCA 58.373 38.462 0.00 0.00 0.00 3.91
8449 8611 8.680039 ATCCTACTATGGACTATATACGAAGC 57.320 38.462 0.00 0.00 39.17 3.86
8452 8614 9.436866 AGAGATCCTACTATGGACTATATACGA 57.563 37.037 0.00 0.00 39.17 3.43
8458 8620 9.747898 CTTTGTAGAGATCCTACTATGGACTAT 57.252 37.037 17.11 0.00 46.19 2.12
8459 8621 8.946248 TCTTTGTAGAGATCCTACTATGGACTA 58.054 37.037 17.11 0.00 46.19 2.59
8460 8622 7.722285 GTCTTTGTAGAGATCCTACTATGGACT 59.278 40.741 17.11 0.00 46.19 3.85
8461 8623 7.722285 AGTCTTTGTAGAGATCCTACTATGGAC 59.278 40.741 17.11 17.40 46.19 4.02
8462 8624 7.817440 AGTCTTTGTAGAGATCCTACTATGGA 58.183 38.462 17.11 10.83 46.19 3.41
8463 8625 8.356657 CAAGTCTTTGTAGAGATCCTACTATGG 58.643 40.741 17.11 9.43 46.19 2.74
8464 8626 8.908903 ACAAGTCTTTGTAGAGATCCTACTATG 58.091 37.037 17.11 13.22 45.45 2.23
8480 8642 7.119846 CCCTCACTTCCTAAATACAAGTCTTTG 59.880 40.741 0.00 0.00 40.24 2.77
8481 8643 7.017254 TCCCTCACTTCCTAAATACAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
8482 8644 6.500751 TCCCTCACTTCCTAAATACAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
8483 8645 6.023603 TCCCTCACTTCCTAAATACAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
8484 8646 6.070710 ACTCCCTCACTTCCTAAATACAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
8485 8647 5.785940 ACTCCCTCACTTCCTAAATACAAGT 59.214 40.000 0.00 0.00 0.00 3.16
8486 8648 6.301169 ACTCCCTCACTTCCTAAATACAAG 57.699 41.667 0.00 0.00 0.00 3.16
8487 8649 6.958192 ACTACTCCCTCACTTCCTAAATACAA 59.042 38.462 0.00 0.00 0.00 2.41
8488 8650 6.500336 ACTACTCCCTCACTTCCTAAATACA 58.500 40.000 0.00 0.00 0.00 2.29
8489 8651 7.093421 ACAACTACTCCCTCACTTCCTAAATAC 60.093 40.741 0.00 0.00 0.00 1.89
8490 8652 6.958192 ACAACTACTCCCTCACTTCCTAAATA 59.042 38.462 0.00 0.00 0.00 1.40
8491 8653 5.785940 ACAACTACTCCCTCACTTCCTAAAT 59.214 40.000 0.00 0.00 0.00 1.40
8492 8654 5.152934 ACAACTACTCCCTCACTTCCTAAA 58.847 41.667 0.00 0.00 0.00 1.85
8493 8655 4.748701 ACAACTACTCCCTCACTTCCTAA 58.251 43.478 0.00 0.00 0.00 2.69
8494 8656 4.399483 ACAACTACTCCCTCACTTCCTA 57.601 45.455 0.00 0.00 0.00 2.94
8495 8657 3.261818 ACAACTACTCCCTCACTTCCT 57.738 47.619 0.00 0.00 0.00 3.36
8496 8658 4.771054 TCTAACAACTACTCCCTCACTTCC 59.229 45.833 0.00 0.00 0.00 3.46
8497 8659 5.979288 TCTAACAACTACTCCCTCACTTC 57.021 43.478 0.00 0.00 0.00 3.01
8498 8660 5.422650 GGATCTAACAACTACTCCCTCACTT 59.577 44.000 0.00 0.00 0.00 3.16
8499 8661 4.957327 GGATCTAACAACTACTCCCTCACT 59.043 45.833 0.00 0.00 0.00 3.41
8500 8662 4.099727 GGGATCTAACAACTACTCCCTCAC 59.900 50.000 0.00 0.00 39.42 3.51
8501 8663 4.287552 GGGATCTAACAACTACTCCCTCA 58.712 47.826 0.00 0.00 39.42 3.86
8502 8664 3.318557 CGGGATCTAACAACTACTCCCTC 59.681 52.174 4.09 0.00 40.20 4.30
8503 8665 3.053095 TCGGGATCTAACAACTACTCCCT 60.053 47.826 4.09 0.00 40.20 4.20
8504 8666 3.294214 TCGGGATCTAACAACTACTCCC 58.706 50.000 0.00 0.00 39.19 4.30
8505 8667 4.828387 AGATCGGGATCTAACAACTACTCC 59.172 45.833 9.38 0.00 45.69 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.