Multiple sequence alignment - TraesCS6B01G293500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G293500 chr6B 100.000 4113 0 0 1 4113 527041294 527045406 0.000000e+00 7596.0
1 TraesCS6B01G293500 chr6B 95.527 626 24 3 1 622 106516498 106515873 0.000000e+00 998.0
2 TraesCS6B01G293500 chr6B 85.938 192 27 0 2277 2468 92697751 92697942 5.390000e-49 206.0
3 TraesCS6B01G293500 chr6B 92.308 65 4 1 4046 4110 624881816 624881753 1.570000e-14 91.6
4 TraesCS6B01G293500 chr6D 92.371 1953 76 33 1697 3618 351971126 351969216 0.000000e+00 2713.0
5 TraesCS6B01G293500 chr6D 88.871 629 29 15 868 1470 351971754 351971141 0.000000e+00 736.0
6 TraesCS6B01G293500 chr6D 86.911 191 8 10 622 796 351971939 351971750 9.020000e-47 198.0
7 TraesCS6B01G293500 chr6A 87.934 2014 106 65 1699 3618 491027244 491029214 0.000000e+00 2246.0
8 TraesCS6B01G293500 chr6A 85.000 900 63 46 622 1489 491026394 491027253 0.000000e+00 848.0
9 TraesCS6B01G293500 chr6A 92.641 231 14 2 1466 1696 17663416 17663643 3.070000e-86 329.0
10 TraesCS6B01G293500 chr6A 85.938 192 27 0 2277 2468 56134606 56134797 5.390000e-49 206.0
11 TraesCS6B01G293500 chr6A 100.000 39 0 0 3965 4003 600301544 600301582 5.700000e-09 73.1
12 TraesCS6B01G293500 chr3B 96.019 628 21 3 1 625 149101319 149100693 0.000000e+00 1018.0
13 TraesCS6B01G293500 chr3B 96.013 627 22 2 1 624 559890084 559890710 0.000000e+00 1016.0
14 TraesCS6B01G293500 chr3B 94.847 621 29 2 1 618 144257235 144257855 0.000000e+00 966.0
15 TraesCS6B01G293500 chr3B 91.968 249 17 1 3717 3965 407410878 407411123 3.040000e-91 346.0
16 TraesCS6B01G293500 chr3B 91.339 254 19 1 3717 3970 579971962 579971712 1.090000e-90 344.0
17 TraesCS6B01G293500 chr3B 93.722 223 14 0 1474 1696 556678896 556679118 6.590000e-88 335.0
18 TraesCS6B01G293500 chr3B 93.694 222 14 0 1475 1696 52194046 52194267 2.370000e-87 333.0
19 TraesCS6B01G293500 chr3B 84.444 90 8 4 3967 4052 752518819 752518906 2.630000e-12 84.2
20 TraesCS6B01G293500 chr1B 95.200 625 27 2 1 622 665854789 665855413 0.000000e+00 985.0
21 TraesCS6B01G293500 chr1B 94.030 67 3 1 4045 4111 1707996 1708061 2.620000e-17 100.0
22 TraesCS6B01G293500 chr5B 95.056 627 28 2 1 624 617850527 617851153 0.000000e+00 983.0
23 TraesCS6B01G293500 chr5B 94.745 628 27 3 1 625 662032929 662032305 0.000000e+00 972.0
24 TraesCS6B01G293500 chr5B 94.222 225 12 1 1472 1696 184284189 184283966 3.940000e-90 342.0
25 TraesCS6B01G293500 chr5B 93.013 229 16 0 1478 1706 474043394 474043166 6.590000e-88 335.0
26 TraesCS6B01G293500 chr5B 86.026 229 27 5 2270 2495 367212636 367212410 1.480000e-59 241.0
27 TraesCS6B01G293500 chr4B 94.737 627 30 2 1 624 611400193 611399567 0.000000e+00 972.0
28 TraesCS6B01G293500 chr4B 94.273 227 13 0 1474 1700 68116557 68116783 8.460000e-92 348.0
29 TraesCS6B01G293500 chr4B 85.185 81 12 0 1327 1407 480590717 480590797 2.630000e-12 84.2
30 TraesCS6B01G293500 chr2B 94.418 627 32 2 1 624 704424312 704423686 0.000000e+00 961.0
31 TraesCS6B01G293500 chr2B 91.968 249 17 1 3717 3965 473290342 473290097 3.040000e-91 346.0
32 TraesCS6B01G293500 chr2B 91.139 79 4 3 3619 3694 800185170 800185092 2.020000e-18 104.0
33 TraesCS6B01G293500 chr2B 96.610 59 2 0 4052 4110 618054335 618054277 9.410000e-17 99.0
34 TraesCS6B01G293500 chr2B 87.013 77 8 1 1333 1407 374241018 374240942 7.330000e-13 86.1
35 TraesCS6B01G293500 chr2B 93.220 59 1 3 4041 4097 730301075 730301132 2.630000e-12 84.2
36 TraesCS6B01G293500 chr3A 97.273 220 6 0 1478 1697 516792752 516792971 1.400000e-99 374.0
37 TraesCS6B01G293500 chr3A 92.369 249 16 1 3717 3965 169225891 169226136 6.540000e-93 351.0
38 TraesCS6B01G293500 chr3A 93.722 223 13 1 1474 1696 535225520 535225741 2.370000e-87 333.0
39 TraesCS6B01G293500 chr3D 93.307 254 14 3 3717 3970 505973656 505973406 5.020000e-99 372.0
40 TraesCS6B01G293500 chr3D 91.633 251 18 1 3717 3967 1327561 1327314 1.090000e-90 344.0
41 TraesCS6B01G293500 chr3D 94.915 59 3 0 4052 4110 434134028 434133970 4.380000e-15 93.5
42 TraesCS6B01G293500 chr3D 90.625 64 5 1 4051 4113 105231326 105231389 2.630000e-12 84.2
43 TraesCS6B01G293500 chr3D 82.105 95 9 6 3967 4055 582959532 582959624 1.590000e-09 75.0
44 TraesCS6B01G293500 chr3D 100.000 39 0 0 3967 4005 10680366 10680328 5.700000e-09 73.1
45 TraesCS6B01G293500 chr2A 92.369 249 14 3 3717 3965 752288019 752287776 2.350000e-92 350.0
46 TraesCS6B01G293500 chr7B 91.968 249 17 1 3717 3965 582381353 582381598 3.040000e-91 346.0
47 TraesCS6B01G293500 chr7B 92.982 57 4 0 4051 4107 669129366 669129422 2.630000e-12 84.2
48 TraesCS6B01G293500 chr1D 90.734 259 20 2 3717 3975 341064949 341064695 3.940000e-90 342.0
49 TraesCS6B01G293500 chr1D 94.091 220 12 1 1477 1696 182614690 182614472 2.370000e-87 333.0
50 TraesCS6B01G293500 chr5D 86.239 218 26 4 2270 2485 317453037 317452822 2.470000e-57 233.0
51 TraesCS6B01G293500 chr5D 82.609 92 8 6 3967 4052 367420433 367420522 1.590000e-09 75.0
52 TraesCS6B01G293500 chr5D 82.105 95 9 6 3967 4055 432046359 432046451 1.590000e-09 75.0
53 TraesCS6B01G293500 chr5D 100.000 39 0 0 3967 4005 84389413 84389375 5.700000e-09 73.1
54 TraesCS6B01G293500 chr5A 86.239 218 26 4 2270 2485 412104200 412103985 2.470000e-57 233.0
55 TraesCS6B01G293500 chrUn 85.938 192 27 0 2277 2468 20367270 20367461 5.390000e-49 206.0
56 TraesCS6B01G293500 chrUn 95.000 60 3 0 4052 4111 54340050 54339991 1.220000e-15 95.3
57 TraesCS6B01G293500 chr4D 83.333 198 29 4 2271 2466 390598131 390598326 3.270000e-41 180.0
58 TraesCS6B01G293500 chr4D 87.654 81 10 0 1327 1407 390597931 390598011 1.220000e-15 95.3
59 TraesCS6B01G293500 chr4D 100.000 39 0 0 3967 4005 369893355 369893317 5.700000e-09 73.1
60 TraesCS6B01G293500 chr4A 86.420 81 11 0 1327 1407 72294213 72294293 5.660000e-14 89.8
61 TraesCS6B01G293500 chr4A 85.542 83 8 3 4029 4110 594876007 594876086 2.630000e-12 84.2
62 TraesCS6B01G293500 chr7D 84.810 79 7 4 3927 4005 593927243 593927316 1.590000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G293500 chr6B 527041294 527045406 4112 False 7596.000000 7596 100.000000 1 4113 1 chr6B.!!$F2 4112
1 TraesCS6B01G293500 chr6B 106515873 106516498 625 True 998.000000 998 95.527000 1 622 1 chr6B.!!$R1 621
2 TraesCS6B01G293500 chr6D 351969216 351971939 2723 True 1215.666667 2713 89.384333 622 3618 3 chr6D.!!$R1 2996
3 TraesCS6B01G293500 chr6A 491026394 491029214 2820 False 1547.000000 2246 86.467000 622 3618 2 chr6A.!!$F4 2996
4 TraesCS6B01G293500 chr3B 149100693 149101319 626 True 1018.000000 1018 96.019000 1 625 1 chr3B.!!$R1 624
5 TraesCS6B01G293500 chr3B 559890084 559890710 626 False 1016.000000 1016 96.013000 1 624 1 chr3B.!!$F5 623
6 TraesCS6B01G293500 chr3B 144257235 144257855 620 False 966.000000 966 94.847000 1 618 1 chr3B.!!$F2 617
7 TraesCS6B01G293500 chr1B 665854789 665855413 624 False 985.000000 985 95.200000 1 622 1 chr1B.!!$F2 621
8 TraesCS6B01G293500 chr5B 617850527 617851153 626 False 983.000000 983 95.056000 1 624 1 chr5B.!!$F1 623
9 TraesCS6B01G293500 chr5B 662032305 662032929 624 True 972.000000 972 94.745000 1 625 1 chr5B.!!$R4 624
10 TraesCS6B01G293500 chr4B 611399567 611400193 626 True 972.000000 972 94.737000 1 624 1 chr4B.!!$R1 623
11 TraesCS6B01G293500 chr2B 704423686 704424312 626 True 961.000000 961 94.418000 1 624 1 chr2B.!!$R4 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 863 0.105142 TAGGAGGTAGGATGGGTGGC 60.105 60.0 0.0 0.0 0.0 5.01 F
1920 2002 0.181587 TGGGCTTGTTCGTTTCTGGA 59.818 50.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2710 2834 0.108945 AGGGCGCGTACTTGTAGTTC 60.109 55.0 8.43 0.0 0.0 3.01 R
3643 3796 0.038599 TGTGAGCCCAAGTGCATGAT 59.961 50.0 0.00 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
333 334 3.556423 GCTTCCCACTTAAAGAAGGACGA 60.556 47.826 0.00 0.00 37.95 4.20
586 591 1.414061 TTTACCCCAAACGGACCGGA 61.414 55.000 20.00 0.00 0.00 5.14
609 614 0.516001 GACAGGATATAGTCGCGCGA 59.484 55.000 31.40 31.40 0.00 5.87
653 668 3.245052 CCATCCCTTTTCCTGTTCACTCT 60.245 47.826 0.00 0.00 0.00 3.24
655 670 4.519906 TCCCTTTTCCTGTTCACTCTTT 57.480 40.909 0.00 0.00 0.00 2.52
663 678 3.829601 TCCTGTTCACTCTTTCTCTCTCC 59.170 47.826 0.00 0.00 0.00 3.71
665 680 3.831911 CTGTTCACTCTTTCTCTCTCCCT 59.168 47.826 0.00 0.00 0.00 4.20
671 686 1.283613 TCTTTCTCTCTCCCTCGCTCT 59.716 52.381 0.00 0.00 0.00 4.09
674 689 1.796017 TCTCTCTCCCTCGCTCTCTA 58.204 55.000 0.00 0.00 0.00 2.43
707 727 1.705002 AAGCATATAGGGCCACGGCA 61.705 55.000 10.83 0.00 44.11 5.69
728 748 2.281970 GGTCCGTTTTTCCCGCCT 60.282 61.111 0.00 0.00 0.00 5.52
800 822 3.553095 GACCCAGAAAGTGGCCGCT 62.553 63.158 14.67 14.67 46.45 5.52
801 823 2.747855 CCCAGAAAGTGGCCGCTC 60.748 66.667 21.49 8.53 46.45 5.03
802 824 2.032528 CCAGAAAGTGGCCGCTCA 59.967 61.111 21.49 0.00 40.39 4.26
804 826 1.172180 CCAGAAAGTGGCCGCTCAAA 61.172 55.000 21.49 0.00 40.39 2.69
805 827 0.883833 CAGAAAGTGGCCGCTCAAAT 59.116 50.000 21.49 6.42 0.00 2.32
806 828 1.135575 CAGAAAGTGGCCGCTCAAATC 60.136 52.381 21.49 15.21 0.00 2.17
807 829 0.179189 GAAAGTGGCCGCTCAAATCG 60.179 55.000 21.49 0.00 0.00 3.34
808 830 2.200170 AAAGTGGCCGCTCAAATCGC 62.200 55.000 21.49 0.00 0.00 4.58
809 831 3.430862 GTGGCCGCTCAAATCGCA 61.431 61.111 9.68 0.00 0.00 5.10
810 832 2.438254 TGGCCGCTCAAATCGCAT 60.438 55.556 0.00 0.00 0.00 4.73
811 833 1.153269 TGGCCGCTCAAATCGCATA 60.153 52.632 0.00 0.00 0.00 3.14
812 834 1.159713 TGGCCGCTCAAATCGCATAG 61.160 55.000 0.00 0.00 0.00 2.23
813 835 1.082496 GCCGCTCAAATCGCATAGC 60.082 57.895 0.00 0.00 0.00 2.97
841 863 0.105142 TAGGAGGTAGGATGGGTGGC 60.105 60.000 0.00 0.00 0.00 5.01
864 886 2.746277 CCCGCCCGTTTCCTTCTG 60.746 66.667 0.00 0.00 0.00 3.02
949 972 5.560953 CGTGAGGTTTTGGTTCTTGAATCTC 60.561 44.000 0.00 0.00 0.00 2.75
958 981 0.741326 TCTTGAATCTCGAGAGGCGG 59.259 55.000 21.52 9.62 41.33 6.13
969 992 1.202245 CGAGAGGCGGAAGAGAAAGAG 60.202 57.143 0.00 0.00 36.03 2.85
972 995 2.096248 GAGGCGGAAGAGAAAGAGAGA 58.904 52.381 0.00 0.00 0.00 3.10
973 996 2.099098 GAGGCGGAAGAGAAAGAGAGAG 59.901 54.545 0.00 0.00 0.00 3.20
974 997 1.470805 GGCGGAAGAGAAAGAGAGAGC 60.471 57.143 0.00 0.00 0.00 4.09
975 998 1.203523 GCGGAAGAGAAAGAGAGAGCA 59.796 52.381 0.00 0.00 0.00 4.26
976 999 2.874849 CGGAAGAGAAAGAGAGAGCAC 58.125 52.381 0.00 0.00 0.00 4.40
977 1000 2.416701 CGGAAGAGAAAGAGAGAGCACC 60.417 54.545 0.00 0.00 0.00 5.01
980 1003 1.550072 AGAGAAAGAGAGAGCACCAGC 59.450 52.381 0.00 0.00 42.56 4.85
981 1004 0.612744 AGAAAGAGAGAGCACCAGCC 59.387 55.000 0.00 0.00 43.56 4.85
982 1005 0.322975 GAAAGAGAGAGCACCAGCCA 59.677 55.000 0.00 0.00 43.56 4.75
984 1007 2.125188 GAGAGAGCACCAGCCAGC 60.125 66.667 0.00 0.00 43.56 4.85
985 1008 2.926779 AGAGAGCACCAGCCAGCA 60.927 61.111 0.00 0.00 43.56 4.41
1004 1040 0.321671 ACAGACTGCGCAGTAATGGT 59.678 50.000 37.87 30.69 42.66 3.55
1031 1067 3.119096 GAGGTTCTTGGCGGCGTC 61.119 66.667 3.62 3.62 0.00 5.19
1062 1098 2.987593 GCGACGTGCGTATGTCTG 59.012 61.111 21.20 15.79 43.41 3.51
1063 1099 2.505498 GCGACGTGCGTATGTCTGG 61.505 63.158 21.20 9.72 43.41 3.86
1064 1100 2.505498 CGACGTGCGTATGTCTGGC 61.505 63.158 21.20 0.00 40.05 4.85
1099 1135 4.351938 CCTTCGACGTGCCGACCA 62.352 66.667 0.00 0.00 38.39 4.02
1240 1285 2.373335 TTGCTTGCCTGAAACCCTTA 57.627 45.000 0.00 0.00 0.00 2.69
1250 1296 4.791734 GCCTGAAACCCTTACTTTGTTTCG 60.792 45.833 9.09 5.16 46.75 3.46
1269 1315 2.029828 TCGCTCTGTTCTTCCTGTTCTC 60.030 50.000 0.00 0.00 0.00 2.87
1344 1390 1.078759 CTACCTGCACGGCTTCTTCG 61.079 60.000 2.50 0.00 35.61 3.79
1367 1413 1.300963 GTCCATCAAGCTGCCCAGA 59.699 57.895 0.00 0.00 0.00 3.86
1428 1474 0.834612 TTCAACCCCGCTCCGATTAT 59.165 50.000 0.00 0.00 0.00 1.28
1429 1475 0.391597 TCAACCCCGCTCCGATTATC 59.608 55.000 0.00 0.00 0.00 1.75
1446 1496 1.352156 ATCTCGCGAACGTTTCCTGC 61.352 55.000 11.33 3.98 41.18 4.85
1451 1501 2.026522 CGAACGTTTCCTGCCCAAA 58.973 52.632 0.46 0.00 0.00 3.28
1470 1520 6.072948 GCCCAAATTAATTAAGCAACGGTTTT 60.073 34.615 0.01 0.00 0.00 2.43
1472 1522 8.436970 CCCAAATTAATTAAGCAACGGTTTTAC 58.563 33.333 0.01 0.00 0.00 2.01
1473 1523 9.198837 CCAAATTAATTAAGCAACGGTTTTACT 57.801 29.630 0.01 0.00 0.00 2.24
1476 1526 9.563898 AATTAATTAAGCAACGGTTTTACTAGC 57.436 29.630 0.00 0.00 0.00 3.42
1477 1527 6.812879 AATTAAGCAACGGTTTTACTAGCT 57.187 33.333 0.00 0.00 0.00 3.32
1478 1528 7.910441 AATTAAGCAACGGTTTTACTAGCTA 57.090 32.000 2.15 0.00 0.00 3.32
1479 1529 6.710692 TTAAGCAACGGTTTTACTAGCTAC 57.289 37.500 2.15 0.00 0.00 3.58
1480 1530 4.532314 AGCAACGGTTTTACTAGCTACT 57.468 40.909 0.00 0.00 0.00 2.57
1481 1531 5.649782 AGCAACGGTTTTACTAGCTACTA 57.350 39.130 0.00 0.00 0.00 1.82
1482 1532 5.405797 AGCAACGGTTTTACTAGCTACTAC 58.594 41.667 0.00 0.00 0.00 2.73
1483 1533 4.564372 GCAACGGTTTTACTAGCTACTACC 59.436 45.833 0.00 0.00 0.00 3.18
1484 1534 5.623141 GCAACGGTTTTACTAGCTACTACCT 60.623 44.000 0.00 0.00 0.00 3.08
1485 1535 5.826601 ACGGTTTTACTAGCTACTACCTC 57.173 43.478 0.00 0.00 0.00 3.85
1486 1536 4.642437 ACGGTTTTACTAGCTACTACCTCC 59.358 45.833 0.00 0.00 0.00 4.30
1487 1537 4.260948 CGGTTTTACTAGCTACTACCTCCG 60.261 50.000 0.00 0.00 0.00 4.63
1488 1538 4.642437 GGTTTTACTAGCTACTACCTCCGT 59.358 45.833 0.00 0.00 0.00 4.69
1489 1539 5.220951 GGTTTTACTAGCTACTACCTCCGTC 60.221 48.000 0.00 0.00 0.00 4.79
1490 1540 5.365021 TTTACTAGCTACTACCTCCGTCT 57.635 43.478 0.00 0.00 0.00 4.18
1491 1541 3.473923 ACTAGCTACTACCTCCGTCTC 57.526 52.381 0.00 0.00 0.00 3.36
1492 1542 2.224018 ACTAGCTACTACCTCCGTCTCG 60.224 54.545 0.00 0.00 0.00 4.04
1504 1554 2.933495 CCGTCTCGGTGAATAAGTCA 57.067 50.000 0.00 0.00 42.73 3.41
1505 1555 3.438297 CCGTCTCGGTGAATAAGTCAT 57.562 47.619 0.00 0.00 42.73 3.06
1506 1556 3.782046 CCGTCTCGGTGAATAAGTCATT 58.218 45.455 0.00 0.00 42.73 2.57
1507 1557 3.797256 CCGTCTCGGTGAATAAGTCATTC 59.203 47.826 0.00 0.00 42.73 2.67
1508 1558 3.482472 CGTCTCGGTGAATAAGTCATTCG 59.518 47.826 0.00 0.00 45.25 3.34
1515 1565 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
1516 1566 6.091123 GTGAATAAGTCATTCGCGTAGTTT 57.909 37.500 5.77 0.00 45.25 2.66
1517 1567 6.531439 GTGAATAAGTCATTCGCGTAGTTTT 58.469 36.000 5.77 0.00 45.25 2.43
1518 1568 7.669098 GTGAATAAGTCATTCGCGTAGTTTTA 58.331 34.615 5.77 0.20 45.25 1.52
1519 1569 7.839837 GTGAATAAGTCATTCGCGTAGTTTTAG 59.160 37.037 5.77 0.00 45.25 1.85
1520 1570 6.823678 ATAAGTCATTCGCGTAGTTTTAGG 57.176 37.500 5.77 0.00 0.00 2.69
1521 1571 4.184079 AGTCATTCGCGTAGTTTTAGGT 57.816 40.909 5.77 0.00 0.00 3.08
1522 1572 4.171754 AGTCATTCGCGTAGTTTTAGGTC 58.828 43.478 5.77 0.00 0.00 3.85
1523 1573 3.001365 GTCATTCGCGTAGTTTTAGGTCG 60.001 47.826 5.77 0.00 0.00 4.79
1524 1574 2.987413 TTCGCGTAGTTTTAGGTCGA 57.013 45.000 5.77 0.00 0.00 4.20
1525 1575 3.492421 TTCGCGTAGTTTTAGGTCGAT 57.508 42.857 5.77 0.00 0.00 3.59
1526 1576 2.789208 TCGCGTAGTTTTAGGTCGATG 58.211 47.619 5.77 0.00 0.00 3.84
1527 1577 2.419673 TCGCGTAGTTTTAGGTCGATGA 59.580 45.455 5.77 0.00 0.00 2.92
1528 1578 3.065786 TCGCGTAGTTTTAGGTCGATGAT 59.934 43.478 5.77 0.00 0.00 2.45
1529 1579 3.795101 CGCGTAGTTTTAGGTCGATGATT 59.205 43.478 0.00 0.00 0.00 2.57
1530 1580 4.266976 CGCGTAGTTTTAGGTCGATGATTT 59.733 41.667 0.00 0.00 0.00 2.17
1531 1581 5.456497 CGCGTAGTTTTAGGTCGATGATTTA 59.544 40.000 0.00 0.00 0.00 1.40
1532 1582 6.020440 CGCGTAGTTTTAGGTCGATGATTTAA 60.020 38.462 0.00 0.00 0.00 1.52
1533 1583 7.115553 GCGTAGTTTTAGGTCGATGATTTAAC 58.884 38.462 0.00 0.00 0.00 2.01
1534 1584 7.009907 GCGTAGTTTTAGGTCGATGATTTAACT 59.990 37.037 0.00 0.00 0.00 2.24
1535 1585 9.507280 CGTAGTTTTAGGTCGATGATTTAACTA 57.493 33.333 0.00 0.00 0.00 2.24
1663 1713 8.504815 TCCTTAAATCGATGATCTAGAACTACG 58.495 37.037 0.00 4.93 0.00 3.51
1664 1714 7.271653 CCTTAAATCGATGATCTAGAACTACGC 59.728 40.741 0.00 0.00 0.00 4.42
1665 1715 3.790212 TCGATGATCTAGAACTACGCG 57.210 47.619 3.53 3.53 0.00 6.01
1666 1716 3.387397 TCGATGATCTAGAACTACGCGA 58.613 45.455 15.93 0.00 0.00 5.87
1667 1717 3.805971 TCGATGATCTAGAACTACGCGAA 59.194 43.478 15.93 0.00 0.00 4.70
1668 1718 4.451435 TCGATGATCTAGAACTACGCGAAT 59.549 41.667 15.93 0.00 0.00 3.34
1669 1719 4.551509 CGATGATCTAGAACTACGCGAATG 59.448 45.833 15.93 4.47 0.00 2.67
1670 1720 5.614887 CGATGATCTAGAACTACGCGAATGA 60.615 44.000 15.93 0.00 0.00 2.57
1671 1721 4.845387 TGATCTAGAACTACGCGAATGAC 58.155 43.478 15.93 0.66 0.00 3.06
1672 1722 4.575236 TGATCTAGAACTACGCGAATGACT 59.425 41.667 15.93 9.07 0.00 3.41
1673 1723 4.959596 TCTAGAACTACGCGAATGACTT 57.040 40.909 15.93 0.00 0.00 3.01
1674 1724 6.259387 TGATCTAGAACTACGCGAATGACTTA 59.741 38.462 15.93 0.00 0.00 2.24
1675 1725 6.615264 TCTAGAACTACGCGAATGACTTAT 57.385 37.500 15.93 0.00 0.00 1.73
1676 1726 7.024340 TCTAGAACTACGCGAATGACTTATT 57.976 36.000 15.93 0.00 0.00 1.40
1677 1727 7.130917 TCTAGAACTACGCGAATGACTTATTC 58.869 38.462 15.93 3.24 41.46 1.75
1678 1728 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
1679 1729 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
1680 1730 4.995124 ACTACGCGAATGACTTATTCACT 58.005 39.130 15.93 0.00 44.42 3.41
1681 1731 5.408356 ACTACGCGAATGACTTATTCACTT 58.592 37.500 15.93 0.00 44.42 3.16
1682 1732 6.558009 ACTACGCGAATGACTTATTCACTTA 58.442 36.000 15.93 0.00 44.42 2.24
1683 1733 5.950965 ACGCGAATGACTTATTCACTTAG 57.049 39.130 15.93 0.00 44.42 2.18
1684 1734 5.647589 ACGCGAATGACTTATTCACTTAGA 58.352 37.500 15.93 0.00 44.42 2.10
1685 1735 6.273825 ACGCGAATGACTTATTCACTTAGAT 58.726 36.000 15.93 0.00 44.42 1.98
1686 1736 6.199154 ACGCGAATGACTTATTCACTTAGATG 59.801 38.462 15.93 0.00 44.42 2.90
1687 1737 6.346120 CGCGAATGACTTATTCACTTAGATGG 60.346 42.308 0.00 0.00 44.42 3.51
1688 1738 6.701841 GCGAATGACTTATTCACTTAGATGGA 59.298 38.462 0.00 0.00 44.42 3.41
1689 1739 7.224753 GCGAATGACTTATTCACTTAGATGGAA 59.775 37.037 0.00 0.00 44.42 3.53
1690 1740 8.759641 CGAATGACTTATTCACTTAGATGGAAG 58.240 37.037 0.00 0.00 44.42 3.46
1691 1741 9.606631 GAATGACTTATTCACTTAGATGGAAGT 57.393 33.333 0.00 0.00 43.79 3.01
1694 1744 9.256228 TGACTTATTCACTTAGATGGAAGTAGT 57.744 33.333 0.00 0.00 37.57 2.73
1786 1838 3.243434 ACATGGCGTGTCAGCTATAGTAC 60.243 47.826 6.51 0.00 35.77 2.73
1916 1998 1.335872 CCACATGGGCTTGTTCGTTTC 60.336 52.381 0.00 0.00 0.00 2.78
1917 1999 1.608590 CACATGGGCTTGTTCGTTTCT 59.391 47.619 0.00 0.00 0.00 2.52
1920 2002 0.181587 TGGGCTTGTTCGTTTCTGGA 59.818 50.000 0.00 0.00 0.00 3.86
1925 2007 2.031944 GCTTGTTCGTTTCTGGACCTTC 60.032 50.000 0.00 0.00 0.00 3.46
2025 2113 2.742856 CGCATTCATCAGCCTCACCTAA 60.743 50.000 0.00 0.00 0.00 2.69
2028 2116 5.065914 GCATTCATCAGCCTCACCTAATAA 58.934 41.667 0.00 0.00 0.00 1.40
2030 2118 6.881065 GCATTCATCAGCCTCACCTAATAATA 59.119 38.462 0.00 0.00 0.00 0.98
2031 2119 7.391554 GCATTCATCAGCCTCACCTAATAATAA 59.608 37.037 0.00 0.00 0.00 1.40
2032 2120 9.288576 CATTCATCAGCCTCACCTAATAATAAA 57.711 33.333 0.00 0.00 0.00 1.40
2091 2182 1.325355 ACGAGGGAGAACGAGTCAAA 58.675 50.000 0.00 0.00 0.00 2.69
2102 2198 6.308282 GGAGAACGAGTCAAATAGTAACAGTG 59.692 42.308 0.00 0.00 0.00 3.66
2103 2199 6.978338 AGAACGAGTCAAATAGTAACAGTGA 58.022 36.000 0.00 0.00 0.00 3.41
2108 2218 8.521176 ACGAGTCAAATAGTAACAGTGAGTAAT 58.479 33.333 0.00 0.00 0.00 1.89
2136 2247 5.245526 GTGGTAGATGGAGGGAATAACGTAT 59.754 44.000 0.00 0.00 0.00 3.06
2137 2248 5.842328 TGGTAGATGGAGGGAATAACGTATT 59.158 40.000 0.00 0.00 0.00 1.89
2138 2249 7.011994 TGGTAGATGGAGGGAATAACGTATTA 58.988 38.462 0.00 0.00 0.00 0.98
2140 2251 8.033626 GGTAGATGGAGGGAATAACGTATTAAG 58.966 40.741 0.00 0.00 0.00 1.85
2141 2252 7.613551 AGATGGAGGGAATAACGTATTAAGT 57.386 36.000 0.00 0.00 0.00 2.24
2142 2253 8.716674 AGATGGAGGGAATAACGTATTAAGTA 57.283 34.615 0.00 0.00 0.00 2.24
2143 2254 8.583296 AGATGGAGGGAATAACGTATTAAGTAC 58.417 37.037 0.00 0.00 0.00 2.73
2165 2276 9.635520 AGTACGTACATATTTGGTATAGATTGC 57.364 33.333 26.55 0.00 0.00 3.56
2167 2278 8.896320 ACGTACATATTTGGTATAGATTGCAA 57.104 30.769 0.00 0.00 0.00 4.08
2168 2279 8.770828 ACGTACATATTTGGTATAGATTGCAAC 58.229 33.333 0.00 0.00 0.00 4.17
2169 2280 7.949962 CGTACATATTTGGTATAGATTGCAACG 59.050 37.037 0.00 0.00 0.00 4.10
2171 2282 8.445275 ACATATTTGGTATAGATTGCAACGAA 57.555 30.769 0.00 0.00 0.00 3.85
2172 2283 8.342634 ACATATTTGGTATAGATTGCAACGAAC 58.657 33.333 0.00 0.00 0.00 3.95
2204 2316 6.820470 CAGTTCTAAAGATAGTACTGCTGC 57.180 41.667 5.39 0.00 44.93 5.25
2205 2317 6.568869 CAGTTCTAAAGATAGTACTGCTGCT 58.431 40.000 5.39 0.00 44.93 4.24
2206 2318 7.708051 CAGTTCTAAAGATAGTACTGCTGCTA 58.292 38.462 5.39 0.00 44.93 3.49
2207 2319 7.860373 CAGTTCTAAAGATAGTACTGCTGCTAG 59.140 40.741 5.39 7.80 44.93 3.42
2208 2320 7.558444 AGTTCTAAAGATAGTACTGCTGCTAGT 59.442 37.037 5.39 5.63 38.07 2.57
2209 2321 8.838365 GTTCTAAAGATAGTACTGCTGCTAGTA 58.162 37.037 5.39 4.64 32.19 1.82
2210 2322 9.575868 TTCTAAAGATAGTACTGCTGCTAGTAT 57.424 33.333 5.39 5.85 35.75 2.12
2211 2323 9.575868 TCTAAAGATAGTACTGCTGCTAGTATT 57.424 33.333 5.39 11.45 35.75 1.89
2212 2324 9.619316 CTAAAGATAGTACTGCTGCTAGTATTG 57.381 37.037 5.39 0.00 35.75 1.90
2213 2325 7.589958 AAGATAGTACTGCTGCTAGTATTGT 57.410 36.000 5.39 8.56 35.75 2.71
2214 2326 7.209471 AGATAGTACTGCTGCTAGTATTGTC 57.791 40.000 5.39 15.76 35.75 3.18
2215 2327 4.657436 AGTACTGCTGCTAGTATTGTCC 57.343 45.455 12.68 3.45 35.75 4.02
2216 2328 4.282496 AGTACTGCTGCTAGTATTGTCCT 58.718 43.478 12.68 5.10 35.75 3.85
2217 2329 3.810310 ACTGCTGCTAGTATTGTCCTC 57.190 47.619 0.00 0.00 0.00 3.71
2224 2336 3.195610 TGCTAGTATTGTCCTCCTGTGTG 59.804 47.826 0.00 0.00 0.00 3.82
2240 2352 7.095355 CCTCCTGTGTGTGTATAACAAACTTAC 60.095 40.741 2.30 0.00 45.95 2.34
2493 2605 2.158769 ACCCACATCATGTACGCATCAT 60.159 45.455 0.00 0.00 31.99 2.45
2495 2607 3.132925 CCACATCATGTACGCATCATCA 58.867 45.455 0.00 0.00 31.99 3.07
2533 2645 3.383505 TGCCACTGCACGTAGTAGAATAT 59.616 43.478 9.33 0.00 44.23 1.28
2677 2801 2.284625 ACCATCTGGGACGGCTCA 60.285 61.111 0.00 0.00 41.15 4.26
2710 2834 2.332654 GGGCGGCAAGTACAAGGTG 61.333 63.158 12.47 0.00 0.00 4.00
2752 2876 0.103208 CCTCCGATTTCTCCGACCTG 59.897 60.000 0.00 0.00 0.00 4.00
2833 2975 3.468140 GGGTACGACCTCCTGGGC 61.468 72.222 0.00 0.00 38.64 5.36
2917 3059 1.521681 GCGCCAGATGACCTACACC 60.522 63.158 0.00 0.00 0.00 4.16
3179 3321 1.876799 TGGGCGGCGTTATATGATTTG 59.123 47.619 9.37 0.00 0.00 2.32
3201 3343 3.518303 GGGTGTCTCTGTATAGGTTGGTT 59.482 47.826 0.00 0.00 0.00 3.67
3216 3358 5.347978 AGGTTGGTTGTAGGGATTAGTAGT 58.652 41.667 0.00 0.00 0.00 2.73
3226 3368 9.444600 TTGTAGGGATTAGTAGTTCATTGTTTC 57.555 33.333 0.00 0.00 0.00 2.78
3315 3459 8.788325 ATTACTAATGTTTACTTTCGGCTTCT 57.212 30.769 0.00 0.00 0.00 2.85
3316 3460 8.611654 TTACTAATGTTTACTTTCGGCTTCTT 57.388 30.769 0.00 0.00 0.00 2.52
3342 3486 3.555586 CCTCCAAAAGCACCATTTTCAGG 60.556 47.826 0.00 0.00 30.01 3.86
3588 3739 3.181500 GCTTTATTCGCCCGTTCAATTCT 60.181 43.478 0.00 0.00 0.00 2.40
3614 3767 1.972198 CAGTGTGTCCCGCTCCTAA 59.028 57.895 0.00 0.00 0.00 2.69
3615 3768 0.389948 CAGTGTGTCCCGCTCCTAAC 60.390 60.000 0.00 0.00 0.00 2.34
3616 3769 0.542232 AGTGTGTCCCGCTCCTAACT 60.542 55.000 0.00 0.00 0.00 2.24
3617 3770 0.389948 GTGTGTCCCGCTCCTAACTG 60.390 60.000 0.00 0.00 0.00 3.16
3618 3771 1.218316 GTGTCCCGCTCCTAACTGG 59.782 63.158 0.00 0.00 37.10 4.00
3619 3772 2.187163 GTCCCGCTCCTAACTGGC 59.813 66.667 0.00 0.00 35.26 4.85
3620 3773 3.081409 TCCCGCTCCTAACTGGCC 61.081 66.667 0.00 0.00 35.26 5.36
3621 3774 3.399181 CCCGCTCCTAACTGGCCA 61.399 66.667 4.71 4.71 35.26 5.36
3622 3775 2.746375 CCCGCTCCTAACTGGCCAT 61.746 63.158 5.51 0.00 35.26 4.40
3623 3776 1.407656 CCCGCTCCTAACTGGCCATA 61.408 60.000 5.51 0.00 35.26 2.74
3624 3777 0.468226 CCGCTCCTAACTGGCCATAA 59.532 55.000 5.51 0.00 35.26 1.90
3625 3778 1.072331 CCGCTCCTAACTGGCCATAAT 59.928 52.381 5.51 0.00 35.26 1.28
3626 3779 2.146342 CGCTCCTAACTGGCCATAATG 58.854 52.381 5.51 0.00 35.26 1.90
3627 3780 2.508526 GCTCCTAACTGGCCATAATGG 58.491 52.381 5.51 7.30 41.55 3.16
3628 3781 2.815589 GCTCCTAACTGGCCATAATGGG 60.816 54.545 5.51 7.29 38.19 4.00
3629 3782 2.711009 CTCCTAACTGGCCATAATGGGA 59.289 50.000 5.51 11.55 38.19 4.37
3630 3783 3.331889 CTCCTAACTGGCCATAATGGGAT 59.668 47.826 5.51 0.00 38.19 3.85
3631 3784 4.508331 TCCTAACTGGCCATAATGGGATA 58.492 43.478 5.51 0.00 38.19 2.59
3632 3785 4.917040 TCCTAACTGGCCATAATGGGATAA 59.083 41.667 5.51 0.00 38.19 1.75
3633 3786 5.555542 TCCTAACTGGCCATAATGGGATAAT 59.444 40.000 5.51 0.00 38.19 1.28
3634 3787 6.738086 TCCTAACTGGCCATAATGGGATAATA 59.262 38.462 5.51 0.00 38.19 0.98
3635 3788 7.408805 TCCTAACTGGCCATAATGGGATAATAT 59.591 37.037 5.51 0.00 38.19 1.28
3636 3789 8.723365 CCTAACTGGCCATAATGGGATAATATA 58.277 37.037 5.51 0.00 38.19 0.86
3639 3792 8.174994 ACTGGCCATAATGGGATAATATAAGT 57.825 34.615 5.51 0.00 38.19 2.24
3640 3793 9.291516 ACTGGCCATAATGGGATAATATAAGTA 57.708 33.333 5.51 0.00 38.19 2.24
3641 3794 9.784531 CTGGCCATAATGGGATAATATAAGTAG 57.215 37.037 5.51 0.00 38.19 2.57
3642 3795 9.291516 TGGCCATAATGGGATAATATAAGTAGT 57.708 33.333 0.00 0.00 38.19 2.73
3657 3810 3.199880 AGTAGTATCATGCACTTGGGC 57.800 47.619 5.29 0.00 0.00 5.36
3658 3811 2.774234 AGTAGTATCATGCACTTGGGCT 59.226 45.455 5.29 0.00 34.04 5.19
3659 3812 2.338577 AGTATCATGCACTTGGGCTC 57.661 50.000 0.00 0.00 34.04 4.70
3660 3813 1.561076 AGTATCATGCACTTGGGCTCA 59.439 47.619 0.00 0.00 34.04 4.26
3661 3814 1.672881 GTATCATGCACTTGGGCTCAC 59.327 52.381 0.00 0.00 34.04 3.51
3662 3815 0.038599 ATCATGCACTTGGGCTCACA 59.961 50.000 0.00 0.00 34.04 3.58
3663 3816 0.178995 TCATGCACTTGGGCTCACAA 60.179 50.000 0.00 0.00 34.04 3.33
3664 3817 0.675083 CATGCACTTGGGCTCACAAA 59.325 50.000 0.00 0.00 34.04 2.83
3665 3818 0.675633 ATGCACTTGGGCTCACAAAC 59.324 50.000 0.00 0.00 34.04 2.93
3666 3819 0.682532 TGCACTTGGGCTCACAAACA 60.683 50.000 0.00 0.00 34.04 2.83
3667 3820 0.675633 GCACTTGGGCTCACAAACAT 59.324 50.000 0.00 0.00 0.00 2.71
3668 3821 1.603678 GCACTTGGGCTCACAAACATG 60.604 52.381 0.00 0.00 0.00 3.21
3669 3822 0.675633 ACTTGGGCTCACAAACATGC 59.324 50.000 0.00 0.00 0.00 4.06
3670 3823 0.963962 CTTGGGCTCACAAACATGCT 59.036 50.000 0.00 0.00 0.00 3.79
3671 3824 1.342174 CTTGGGCTCACAAACATGCTT 59.658 47.619 0.00 0.00 0.00 3.91
3672 3825 2.284754 TGGGCTCACAAACATGCTTA 57.715 45.000 0.00 0.00 0.00 3.09
3673 3826 2.806434 TGGGCTCACAAACATGCTTAT 58.194 42.857 0.00 0.00 0.00 1.73
3674 3827 2.492881 TGGGCTCACAAACATGCTTATG 59.507 45.455 0.00 0.00 0.00 1.90
3675 3828 2.493278 GGGCTCACAAACATGCTTATGT 59.507 45.455 0.00 0.00 36.10 2.29
3676 3829 3.504863 GGCTCACAAACATGCTTATGTG 58.495 45.455 12.13 12.13 43.42 3.21
3678 3831 4.161333 GCTCACAAACATGCTTATGTGAC 58.839 43.478 15.35 10.79 45.14 3.67
3679 3832 4.320421 GCTCACAAACATGCTTATGTGACA 60.320 41.667 15.35 0.00 45.14 3.58
3680 3833 5.361135 TCACAAACATGCTTATGTGACAG 57.639 39.130 15.35 0.00 45.14 3.51
3681 3834 5.062528 TCACAAACATGCTTATGTGACAGA 58.937 37.500 15.35 0.00 45.14 3.41
3682 3835 5.049474 TCACAAACATGCTTATGTGACAGAC 60.049 40.000 15.35 0.00 45.14 3.51
3683 3836 4.821260 ACAAACATGCTTATGTGACAGACA 59.179 37.500 0.00 0.00 39.53 3.41
3684 3837 7.269313 CACAAACATGCTTATGTGACAGACAC 61.269 42.308 12.73 0.00 44.52 3.67
3714 3867 6.613153 AAATGGTTAGGCTAGCTATAGAGG 57.387 41.667 15.72 0.00 0.00 3.69
3715 3868 4.048970 TGGTTAGGCTAGCTATAGAGGG 57.951 50.000 15.72 0.00 0.00 4.30
3716 3869 3.661161 TGGTTAGGCTAGCTATAGAGGGA 59.339 47.826 15.72 0.00 0.00 4.20
3717 3870 4.263994 TGGTTAGGCTAGCTATAGAGGGAG 60.264 50.000 15.72 0.00 0.00 4.30
3718 3871 4.264038 GGTTAGGCTAGCTATAGAGGGAGT 60.264 50.000 15.72 0.00 0.00 3.85
3719 3872 5.044993 GGTTAGGCTAGCTATAGAGGGAGTA 60.045 48.000 15.72 0.00 0.00 2.59
3720 3873 6.354126 GGTTAGGCTAGCTATAGAGGGAGTAT 60.354 46.154 15.72 0.00 0.00 2.12
3721 3874 5.382664 AGGCTAGCTATAGAGGGAGTATC 57.617 47.826 15.72 0.00 0.00 2.24
3722 3875 4.791334 AGGCTAGCTATAGAGGGAGTATCA 59.209 45.833 15.72 0.00 36.25 2.15
3723 3876 5.435041 AGGCTAGCTATAGAGGGAGTATCAT 59.565 44.000 15.72 0.00 36.25 2.45
3724 3877 5.534654 GGCTAGCTATAGAGGGAGTATCATG 59.465 48.000 15.72 0.00 36.25 3.07
3725 3878 6.126409 GCTAGCTATAGAGGGAGTATCATGT 58.874 44.000 7.70 0.00 36.25 3.21
3726 3879 7.284074 GCTAGCTATAGAGGGAGTATCATGTA 58.716 42.308 7.70 0.00 36.25 2.29
3727 3880 7.227910 GCTAGCTATAGAGGGAGTATCATGTAC 59.772 44.444 7.70 0.00 36.25 2.90
3728 3881 7.278724 AGCTATAGAGGGAGTATCATGTACT 57.721 40.000 3.21 7.43 36.25 2.73
3729 3882 7.704727 AGCTATAGAGGGAGTATCATGTACTT 58.295 38.462 3.21 0.00 36.25 2.24
3730 3883 8.837737 AGCTATAGAGGGAGTATCATGTACTTA 58.162 37.037 3.21 0.49 36.25 2.24
3731 3884 9.116067 GCTATAGAGGGAGTATCATGTACTTAG 57.884 40.741 3.21 6.59 36.25 2.18
3732 3885 9.621629 CTATAGAGGGAGTATCATGTACTTAGG 57.378 40.741 0.00 0.00 36.25 2.69
3733 3886 6.532119 AGAGGGAGTATCATGTACTTAGGA 57.468 41.667 8.68 0.00 36.25 2.94
3734 3887 6.308566 AGAGGGAGTATCATGTACTTAGGAC 58.691 44.000 8.68 0.00 36.25 3.85
3735 3888 6.103501 AGAGGGAGTATCATGTACTTAGGACT 59.896 42.308 0.00 0.00 36.25 3.85
3736 3889 6.308566 AGGGAGTATCATGTACTTAGGACTC 58.691 44.000 0.00 2.20 36.25 3.36
3737 3890 5.181622 GGGAGTATCATGTACTTAGGACTCG 59.818 48.000 0.00 0.00 36.25 4.18
3738 3891 5.335035 GGAGTATCATGTACTTAGGACTCGC 60.335 48.000 0.00 0.00 36.25 5.03
3739 3892 5.131067 AGTATCATGTACTTAGGACTCGCA 58.869 41.667 0.00 0.00 0.00 5.10
3740 3893 5.593095 AGTATCATGTACTTAGGACTCGCAA 59.407 40.000 0.00 0.00 0.00 4.85
3741 3894 4.794278 TCATGTACTTAGGACTCGCAAA 57.206 40.909 0.00 0.00 0.00 3.68
3742 3895 4.491676 TCATGTACTTAGGACTCGCAAAC 58.508 43.478 0.00 0.00 0.00 2.93
3743 3896 4.021807 TCATGTACTTAGGACTCGCAAACA 60.022 41.667 0.00 0.00 0.00 2.83
3744 3897 4.530710 TGTACTTAGGACTCGCAAACAT 57.469 40.909 0.00 0.00 0.00 2.71
3745 3898 4.242475 TGTACTTAGGACTCGCAAACATG 58.758 43.478 0.00 0.00 0.00 3.21
3746 3899 2.076863 ACTTAGGACTCGCAAACATGC 58.923 47.619 0.00 0.00 0.00 4.06
3747 3900 2.289694 ACTTAGGACTCGCAAACATGCT 60.290 45.455 0.00 0.00 0.00 3.79
3748 3901 2.472695 TAGGACTCGCAAACATGCTT 57.527 45.000 0.00 0.00 0.00 3.91
3749 3902 2.472695 AGGACTCGCAAACATGCTTA 57.527 45.000 0.00 0.00 0.00 3.09
3750 3903 2.991250 AGGACTCGCAAACATGCTTAT 58.009 42.857 0.00 0.00 0.00 1.73
3751 3904 2.679837 AGGACTCGCAAACATGCTTATG 59.320 45.455 0.00 0.00 0.00 1.90
3752 3905 2.420022 GGACTCGCAAACATGCTTATGT 59.580 45.455 0.00 0.00 36.10 2.29
3753 3906 3.419915 GACTCGCAAACATGCTTATGTG 58.580 45.455 0.00 0.00 34.56 3.21
3754 3907 2.162208 ACTCGCAAACATGCTTATGTGG 59.838 45.455 0.00 0.00 34.56 4.17
3755 3908 1.135431 TCGCAAACATGCTTATGTGGC 60.135 47.619 0.00 0.00 34.56 5.01
3756 3909 1.402588 CGCAAACATGCTTATGTGGCA 60.403 47.619 13.85 0.00 44.05 4.92
3757 3910 2.264813 GCAAACATGCTTATGTGGCAG 58.735 47.619 10.53 0.00 43.15 4.85
3758 3911 2.883574 CAAACATGCTTATGTGGCAGG 58.116 47.619 0.00 0.00 45.30 4.85
3759 3912 0.819582 AACATGCTTATGTGGCAGGC 59.180 50.000 0.00 0.00 43.93 4.85
3760 3913 0.323633 ACATGCTTATGTGGCAGGCA 60.324 50.000 0.00 0.00 43.93 4.75
3761 3914 0.818938 CATGCTTATGTGGCAGGCAA 59.181 50.000 0.00 0.00 43.15 4.52
3762 3915 1.411246 CATGCTTATGTGGCAGGCAAT 59.589 47.619 0.00 0.00 43.15 3.56
3763 3916 1.559368 TGCTTATGTGGCAGGCAATT 58.441 45.000 0.00 0.00 34.56 2.32
3764 3917 2.732763 TGCTTATGTGGCAGGCAATTA 58.267 42.857 0.00 0.00 34.56 1.40
3765 3918 3.095332 TGCTTATGTGGCAGGCAATTAA 58.905 40.909 0.00 0.00 34.56 1.40
3766 3919 3.513119 TGCTTATGTGGCAGGCAATTAAA 59.487 39.130 0.00 0.00 34.56 1.52
3767 3920 4.114794 GCTTATGTGGCAGGCAATTAAAG 58.885 43.478 0.00 1.93 0.00 1.85
3768 3921 4.142182 GCTTATGTGGCAGGCAATTAAAGA 60.142 41.667 0.00 0.00 0.00 2.52
3769 3922 5.624281 GCTTATGTGGCAGGCAATTAAAGAA 60.624 40.000 0.00 0.00 0.00 2.52
3770 3923 3.940209 TGTGGCAGGCAATTAAAGAAG 57.060 42.857 0.00 0.00 0.00 2.85
3771 3924 3.495331 TGTGGCAGGCAATTAAAGAAGA 58.505 40.909 0.00 0.00 0.00 2.87
3772 3925 3.894427 TGTGGCAGGCAATTAAAGAAGAA 59.106 39.130 0.00 0.00 0.00 2.52
3773 3926 4.343526 TGTGGCAGGCAATTAAAGAAGAAA 59.656 37.500 0.00 0.00 0.00 2.52
3774 3927 4.925646 GTGGCAGGCAATTAAAGAAGAAAG 59.074 41.667 0.00 0.00 0.00 2.62
3775 3928 4.832266 TGGCAGGCAATTAAAGAAGAAAGA 59.168 37.500 0.00 0.00 0.00 2.52
3776 3929 5.047802 TGGCAGGCAATTAAAGAAGAAAGAG 60.048 40.000 0.00 0.00 0.00 2.85
3777 3930 5.183904 GGCAGGCAATTAAAGAAGAAAGAGA 59.816 40.000 0.00 0.00 0.00 3.10
3778 3931 6.320944 GCAGGCAATTAAAGAAGAAAGAGAG 58.679 40.000 0.00 0.00 0.00 3.20
3779 3932 6.150140 GCAGGCAATTAAAGAAGAAAGAGAGA 59.850 38.462 0.00 0.00 0.00 3.10
3780 3933 7.626028 GCAGGCAATTAAAGAAGAAAGAGAGAG 60.626 40.741 0.00 0.00 0.00 3.20
3781 3934 7.390162 CAGGCAATTAAAGAAGAAAGAGAGAGT 59.610 37.037 0.00 0.00 0.00 3.24
3782 3935 7.606073 AGGCAATTAAAGAAGAAAGAGAGAGTC 59.394 37.037 0.00 0.00 0.00 3.36
3783 3936 7.389053 GGCAATTAAAGAAGAAAGAGAGAGTCA 59.611 37.037 0.00 0.00 0.00 3.41
3784 3937 8.945057 GCAATTAAAGAAGAAAGAGAGAGTCAT 58.055 33.333 0.00 0.00 0.00 3.06
3840 3993 7.748691 ATGTTATGCTATTATGTGTCATGCA 57.251 32.000 0.00 0.00 0.00 3.96
3841 3994 7.748691 TGTTATGCTATTATGTGTCATGCAT 57.251 32.000 0.00 0.00 41.60 3.96
3842 3995 7.586747 TGTTATGCTATTATGTGTCATGCATG 58.413 34.615 21.07 21.07 39.53 4.06
3843 3996 5.638596 ATGCTATTATGTGTCATGCATGG 57.361 39.130 25.97 8.24 38.10 3.66
3844 3997 3.253921 TGCTATTATGTGTCATGCATGGC 59.746 43.478 24.40 24.40 0.00 4.40
3845 3998 3.253921 GCTATTATGTGTCATGCATGGCA 59.746 43.478 29.45 29.45 44.86 4.92
3846 3999 4.261698 GCTATTATGTGTCATGCATGGCAA 60.262 41.667 34.01 23.37 44.94 4.52
3847 4000 4.948341 ATTATGTGTCATGCATGGCAAT 57.052 36.364 34.01 27.34 44.94 3.56
3848 4001 6.349528 GCTATTATGTGTCATGCATGGCAATA 60.350 38.462 34.01 26.44 44.94 1.90
3849 4002 5.848833 TTATGTGTCATGCATGGCAATAA 57.151 34.783 34.01 29.47 44.94 1.40
3850 4003 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
3851 4004 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
3852 4005 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
3853 4006 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
3854 4007 6.274579 TGTGTCATGCATGGCAATAAATAAG 58.725 36.000 34.01 0.13 44.94 1.73
3855 4008 6.096564 TGTGTCATGCATGGCAATAAATAAGA 59.903 34.615 34.01 6.14 44.94 2.10
3856 4009 6.418819 GTGTCATGCATGGCAATAAATAAGAC 59.581 38.462 34.01 14.70 44.94 3.01
3857 4010 5.922544 GTCATGCATGGCAATAAATAAGACC 59.077 40.000 26.04 0.00 43.62 3.85
3858 4011 5.597594 TCATGCATGGCAATAAATAAGACCA 59.402 36.000 25.97 0.00 43.62 4.02
3859 4012 5.929058 TGCATGGCAATAAATAAGACCAA 57.071 34.783 0.00 0.00 34.76 3.67
3860 4013 5.659463 TGCATGGCAATAAATAAGACCAAC 58.341 37.500 0.00 0.00 34.76 3.77
3861 4014 5.421693 TGCATGGCAATAAATAAGACCAACT 59.578 36.000 0.00 0.00 34.76 3.16
3862 4015 6.605194 TGCATGGCAATAAATAAGACCAACTA 59.395 34.615 0.00 0.00 34.76 2.24
3863 4016 7.287466 TGCATGGCAATAAATAAGACCAACTAT 59.713 33.333 0.00 0.00 34.76 2.12
3864 4017 7.596248 GCATGGCAATAAATAAGACCAACTATG 59.404 37.037 0.00 0.00 0.00 2.23
3865 4018 8.849168 CATGGCAATAAATAAGACCAACTATGA 58.151 33.333 0.00 0.00 0.00 2.15
3866 4019 8.995027 TGGCAATAAATAAGACCAACTATGAT 57.005 30.769 0.00 0.00 0.00 2.45
3913 4066 9.700831 TGCACTATGGATATAGTATCATACACT 57.299 33.333 0.00 0.00 45.95 3.55
3949 4102 8.179509 ACATGATACTAGTGTATGTTACTCCC 57.820 38.462 5.39 0.00 39.29 4.30
3950 4103 7.232941 ACATGATACTAGTGTATGTTACTCCCC 59.767 40.741 5.39 0.00 39.29 4.81
3951 4104 6.675565 TGATACTAGTGTATGTTACTCCCCA 58.324 40.000 5.39 0.00 39.29 4.96
3952 4105 6.548622 TGATACTAGTGTATGTTACTCCCCAC 59.451 42.308 5.39 0.00 39.29 4.61
3953 4106 4.944177 ACTAGTGTATGTTACTCCCCACT 58.056 43.478 0.00 0.00 37.04 4.00
3954 4107 6.083487 ACTAGTGTATGTTACTCCCCACTA 57.917 41.667 0.00 0.00 35.08 2.74
3955 4108 6.680540 ACTAGTGTATGTTACTCCCCACTAT 58.319 40.000 0.00 0.00 35.54 2.12
3956 4109 5.871396 AGTGTATGTTACTCCCCACTATG 57.129 43.478 0.00 0.00 31.80 2.23
3957 4110 5.525484 AGTGTATGTTACTCCCCACTATGA 58.475 41.667 0.00 0.00 31.80 2.15
3958 4111 5.363005 AGTGTATGTTACTCCCCACTATGAC 59.637 44.000 0.00 0.00 31.80 3.06
3959 4112 4.652421 TGTATGTTACTCCCCACTATGACC 59.348 45.833 0.00 0.00 0.00 4.02
3960 4113 3.193395 TGTTACTCCCCACTATGACCA 57.807 47.619 0.00 0.00 0.00 4.02
3961 4114 3.104512 TGTTACTCCCCACTATGACCAG 58.895 50.000 0.00 0.00 0.00 4.00
3962 4115 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
3963 4116 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
3964 4117 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
3965 4118 0.691078 TCCCCACTATGACCAGCCTC 60.691 60.000 0.00 0.00 0.00 4.70
3966 4119 0.982852 CCCCACTATGACCAGCCTCA 60.983 60.000 0.00 0.00 0.00 3.86
3967 4120 1.135094 CCCACTATGACCAGCCTCAT 58.865 55.000 0.00 0.00 35.05 2.90
3968 4121 2.329267 CCCACTATGACCAGCCTCATA 58.671 52.381 0.00 0.00 32.86 2.15
3974 4127 5.791336 CTATGACCAGCCTCATAGTAACA 57.209 43.478 12.50 0.00 42.67 2.41
3975 4128 6.352016 CTATGACCAGCCTCATAGTAACAT 57.648 41.667 12.50 0.00 42.67 2.71
3976 4129 7.468141 CTATGACCAGCCTCATAGTAACATA 57.532 40.000 12.50 0.00 42.67 2.29
3977 4130 5.791336 TGACCAGCCTCATAGTAACATAG 57.209 43.478 0.00 0.00 0.00 2.23
3978 4131 5.454966 TGACCAGCCTCATAGTAACATAGA 58.545 41.667 0.00 0.00 0.00 1.98
3979 4132 6.077993 TGACCAGCCTCATAGTAACATAGAT 58.922 40.000 0.00 0.00 0.00 1.98
3980 4133 7.238710 TGACCAGCCTCATAGTAACATAGATA 58.761 38.462 0.00 0.00 0.00 1.98
3981 4134 7.394641 TGACCAGCCTCATAGTAACATAGATAG 59.605 40.741 0.00 0.00 0.00 2.08
3982 4135 7.471041 ACCAGCCTCATAGTAACATAGATAGA 58.529 38.462 0.00 0.00 0.00 1.98
3983 4136 8.119246 ACCAGCCTCATAGTAACATAGATAGAT 58.881 37.037 0.00 0.00 0.00 1.98
3984 4137 9.634021 CCAGCCTCATAGTAACATAGATAGATA 57.366 37.037 0.00 0.00 0.00 1.98
3986 4139 9.635404 AGCCTCATAGTAACATAGATAGATACC 57.365 37.037 0.00 0.00 0.00 2.73
3987 4140 8.561212 GCCTCATAGTAACATAGATAGATACCG 58.439 40.741 0.00 0.00 0.00 4.02
3988 4141 9.616156 CCTCATAGTAACATAGATAGATACCGT 57.384 37.037 0.00 0.00 0.00 4.83
4036 4189 9.647918 TGTAGAGATTCCACTATAAATGAGACT 57.352 33.333 0.00 0.00 0.00 3.24
4039 4192 9.875708 AGAGATTCCACTATAAATGAGACTACT 57.124 33.333 0.00 0.00 0.00 2.57
4058 4211 9.953565 AGACTACTCATGATACTAATCTACTCC 57.046 37.037 0.00 0.00 32.93 3.85
4059 4212 9.169592 GACTACTCATGATACTAATCTACTCCC 57.830 40.741 0.00 0.00 32.93 4.30
4060 4213 8.896658 ACTACTCATGATACTAATCTACTCCCT 58.103 37.037 0.00 0.00 32.93 4.20
4061 4214 9.391006 CTACTCATGATACTAATCTACTCCCTC 57.609 40.741 0.00 0.00 32.93 4.30
4062 4215 7.179269 ACTCATGATACTAATCTACTCCCTCC 58.821 42.308 0.00 0.00 32.93 4.30
4063 4216 7.103745 TCATGATACTAATCTACTCCCTCCA 57.896 40.000 0.00 0.00 32.93 3.86
4064 4217 7.713518 TCATGATACTAATCTACTCCCTCCAT 58.286 38.462 0.00 0.00 32.93 3.41
4065 4218 8.180165 TCATGATACTAATCTACTCCCTCCATT 58.820 37.037 0.00 0.00 32.93 3.16
4066 4219 8.474025 CATGATACTAATCTACTCCCTCCATTC 58.526 40.741 0.00 0.00 32.93 2.67
4067 4220 6.954684 TGATACTAATCTACTCCCTCCATTCC 59.045 42.308 0.00 0.00 32.93 3.01
4068 4221 5.426325 ACTAATCTACTCCCTCCATTCCT 57.574 43.478 0.00 0.00 0.00 3.36
4069 4222 6.547396 ACTAATCTACTCCCTCCATTCCTA 57.453 41.667 0.00 0.00 0.00 2.94
4070 4223 6.935036 ACTAATCTACTCCCTCCATTCCTAA 58.065 40.000 0.00 0.00 0.00 2.69
4071 4224 7.371043 ACTAATCTACTCCCTCCATTCCTAAA 58.629 38.462 0.00 0.00 0.00 1.85
4072 4225 8.019652 ACTAATCTACTCCCTCCATTCCTAAAT 58.980 37.037 0.00 0.00 0.00 1.40
4073 4226 6.694445 ATCTACTCCCTCCATTCCTAAATG 57.306 41.667 0.00 0.00 41.69 2.32
4074 4227 5.538877 TCTACTCCCTCCATTCCTAAATGT 58.461 41.667 0.00 0.00 40.63 2.71
4075 4228 6.689561 TCTACTCCCTCCATTCCTAAATGTA 58.310 40.000 0.00 0.00 40.63 2.29
4076 4229 7.136885 TCTACTCCCTCCATTCCTAAATGTAA 58.863 38.462 0.00 0.00 40.63 2.41
4077 4230 6.253946 ACTCCCTCCATTCCTAAATGTAAG 57.746 41.667 0.00 0.00 40.63 2.34
4078 4231 5.731678 ACTCCCTCCATTCCTAAATGTAAGT 59.268 40.000 0.00 0.00 40.63 2.24
4079 4232 6.217693 ACTCCCTCCATTCCTAAATGTAAGTT 59.782 38.462 0.00 0.00 40.63 2.66
4080 4233 7.039722 TCCCTCCATTCCTAAATGTAAGTTT 57.960 36.000 0.00 0.00 40.63 2.66
4081 4234 7.475299 TCCCTCCATTCCTAAATGTAAGTTTT 58.525 34.615 0.00 0.00 40.63 2.43
4082 4235 7.953493 TCCCTCCATTCCTAAATGTAAGTTTTT 59.047 33.333 0.00 0.00 40.63 1.94
4083 4236 8.034804 CCCTCCATTCCTAAATGTAAGTTTTTG 58.965 37.037 0.00 0.00 40.63 2.44
4084 4237 8.585018 CCTCCATTCCTAAATGTAAGTTTTTGT 58.415 33.333 0.00 0.00 40.63 2.83
4106 4259 9.719355 TTTGTAGAGATTTCACTATAAACTGCA 57.281 29.630 3.91 0.00 30.16 4.41
4107 4260 9.890629 TTGTAGAGATTTCACTATAAACTGCAT 57.109 29.630 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 181 1.143813 CCATGGGGCTCTGGAACTAT 58.856 55.000 2.85 0.00 34.24 2.12
214 215 0.179134 CTAGCCAAGAACTCGTCGGG 60.179 60.000 0.00 0.00 0.00 5.14
280 281 4.248842 CGTCCACACTGCCCCACA 62.249 66.667 0.00 0.00 0.00 4.17
586 591 0.882474 GCGACTATATCCTGTCCGCT 59.118 55.000 0.00 0.00 33.49 5.52
599 604 1.226575 CAACTCCATCGCGCGACTA 60.227 57.895 37.37 21.69 0.00 2.59
600 605 2.507102 CAACTCCATCGCGCGACT 60.507 61.111 37.37 21.21 0.00 4.18
609 614 0.331616 GTGGGTAAGGCCAACTCCAT 59.668 55.000 5.01 0.00 38.20 3.41
653 668 1.283613 AGAGAGCGAGGGAGAGAGAAA 59.716 52.381 0.00 0.00 0.00 2.52
655 670 1.414919 GTAGAGAGCGAGGGAGAGAGA 59.585 57.143 0.00 0.00 0.00 3.10
707 727 1.228033 CGGGAAAAACGGACCCACT 60.228 57.895 0.00 0.00 43.40 4.00
728 748 2.821366 GTAGGGCCGTCGTCTCGA 60.821 66.667 0.00 0.00 0.00 4.04
789 809 1.875963 CGATTTGAGCGGCCACTTT 59.124 52.632 2.24 0.00 0.00 2.66
814 836 4.625781 CTACCTCCTACGCCGCGC 62.626 72.222 13.88 0.00 0.00 6.86
815 837 3.962421 CCTACCTCCTACGCCGCG 61.962 72.222 12.14 12.14 0.00 6.46
816 838 1.902432 ATCCTACCTCCTACGCCGC 60.902 63.158 0.00 0.00 0.00 6.53
817 839 1.524863 CCATCCTACCTCCTACGCCG 61.525 65.000 0.00 0.00 0.00 6.46
818 840 1.186267 CCCATCCTACCTCCTACGCC 61.186 65.000 0.00 0.00 0.00 5.68
819 841 0.469518 ACCCATCCTACCTCCTACGC 60.470 60.000 0.00 0.00 0.00 4.42
820 842 1.329256 CACCCATCCTACCTCCTACG 58.671 60.000 0.00 0.00 0.00 3.51
821 843 1.718280 CCACCCATCCTACCTCCTAC 58.282 60.000 0.00 0.00 0.00 3.18
822 844 0.105142 GCCACCCATCCTACCTCCTA 60.105 60.000 0.00 0.00 0.00 2.94
823 845 1.384643 GCCACCCATCCTACCTCCT 60.385 63.158 0.00 0.00 0.00 3.69
824 846 2.452937 GGCCACCCATCCTACCTCC 61.453 68.421 0.00 0.00 0.00 4.30
825 847 1.384643 AGGCCACCCATCCTACCTC 60.385 63.158 5.01 0.00 0.00 3.85
826 848 1.384643 GAGGCCACCCATCCTACCT 60.385 63.158 5.01 0.00 31.71 3.08
827 849 1.384643 AGAGGCCACCCATCCTACC 60.385 63.158 5.01 0.00 31.71 3.18
828 850 1.411651 GGAGAGGCCACCCATCCTAC 61.412 65.000 5.01 0.00 36.69 3.18
841 863 4.468689 GAAACGGGCGGGGAGAGG 62.469 72.222 0.00 0.00 0.00 3.69
855 877 2.561419 CGGTACCACTCTCAGAAGGAAA 59.439 50.000 13.54 0.00 0.00 3.13
864 886 4.378874 GGTTATATACGCGGTACCACTCTC 60.379 50.000 12.47 0.00 0.00 3.20
949 972 0.811915 TCTTTCTCTTCCGCCTCTCG 59.188 55.000 0.00 0.00 38.08 4.04
958 981 3.848726 CTGGTGCTCTCTCTTTCTCTTC 58.151 50.000 0.00 0.00 0.00 2.87
969 992 2.745492 GTGCTGGCTGGTGCTCTC 60.745 66.667 0.00 0.00 39.59 3.20
972 995 3.563224 TCTGTGCTGGCTGGTGCT 61.563 61.111 0.00 0.00 39.59 4.40
973 996 3.360340 GTCTGTGCTGGCTGGTGC 61.360 66.667 0.00 0.00 38.76 5.01
974 997 1.964891 CAGTCTGTGCTGGCTGGTG 60.965 63.158 3.25 0.00 33.11 4.17
975 998 2.429058 CAGTCTGTGCTGGCTGGT 59.571 61.111 3.25 0.00 33.11 4.00
984 1007 0.723414 CCATTACTGCGCAGTCTGTG 59.277 55.000 43.74 34.55 42.54 3.66
985 1008 0.321671 ACCATTACTGCGCAGTCTGT 59.678 50.000 43.74 30.67 42.54 3.41
998 1034 1.837439 ACCTCGCCTTCATCACCATTA 59.163 47.619 0.00 0.00 0.00 1.90
1004 1040 1.339055 CCAAGAACCTCGCCTTCATCA 60.339 52.381 0.00 0.00 0.00 3.07
1203 1239 1.879380 CAAAAGCAAGTGACCGATGGA 59.121 47.619 0.00 0.00 0.00 3.41
1227 1272 4.617959 GAAACAAAGTAAGGGTTTCAGGC 58.382 43.478 10.59 0.00 45.91 4.85
1240 1285 3.312697 GGAAGAACAGAGCGAAACAAAGT 59.687 43.478 0.00 0.00 0.00 2.66
1250 1296 3.393089 TGAGAACAGGAAGAACAGAGC 57.607 47.619 0.00 0.00 0.00 4.09
1287 1333 0.392863 CCCGAACCTGCATGTGATCA 60.393 55.000 0.00 0.00 0.00 2.92
1344 1390 3.869272 CAGCTTGATGGACGCGCC 61.869 66.667 5.73 9.63 37.10 6.53
1408 1454 0.614294 TAATCGGAGCGGGGTTGAAA 59.386 50.000 0.00 0.00 0.00 2.69
1428 1474 2.019951 GCAGGAAACGTTCGCGAGA 61.020 57.895 9.59 0.00 44.71 4.04
1429 1475 2.470286 GCAGGAAACGTTCGCGAG 59.530 61.111 9.59 0.27 44.71 5.03
1446 1496 7.428282 AAAACCGTTGCTTAATTAATTTGGG 57.572 32.000 5.91 0.48 0.00 4.12
1451 1501 8.953313 AGCTAGTAAAACCGTTGCTTAATTAAT 58.047 29.630 0.00 0.00 0.00 1.40
1470 1520 3.005261 CGAGACGGAGGTAGTAGCTAGTA 59.995 52.174 4.07 4.07 0.00 1.82
1472 1522 2.406130 CGAGACGGAGGTAGTAGCTAG 58.594 57.143 0.89 2.51 0.00 3.42
1473 1523 2.522836 CGAGACGGAGGTAGTAGCTA 57.477 55.000 0.89 0.00 0.00 3.32
1474 1524 3.383092 CGAGACGGAGGTAGTAGCT 57.617 57.895 0.36 0.36 0.00 3.32
1483 1533 6.238416 GAATGACTTATTCACCGAGACGGAG 61.238 48.000 16.99 9.14 45.73 4.63
1484 1534 4.439700 GAATGACTTATTCACCGAGACGGA 60.440 45.833 16.99 0.00 45.73 4.69
1485 1535 3.797256 GAATGACTTATTCACCGAGACGG 59.203 47.826 8.67 8.67 43.79 4.79
1486 1536 3.482472 CGAATGACTTATTCACCGAGACG 59.518 47.826 0.00 0.00 44.42 4.18
1487 1537 3.243177 GCGAATGACTTATTCACCGAGAC 59.757 47.826 0.00 0.00 44.42 3.36
1488 1538 3.444916 GCGAATGACTTATTCACCGAGA 58.555 45.455 0.00 0.00 44.42 4.04
1489 1539 2.216488 CGCGAATGACTTATTCACCGAG 59.784 50.000 0.00 0.00 44.42 4.63
1490 1540 2.190161 CGCGAATGACTTATTCACCGA 58.810 47.619 0.00 0.00 44.42 4.69
1491 1541 1.924524 ACGCGAATGACTTATTCACCG 59.075 47.619 15.93 0.00 44.42 4.94
1492 1542 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
1493 1543 5.697848 AACTACGCGAATGACTTATTCAC 57.302 39.130 15.93 0.00 44.42 3.18
1494 1544 6.715344 AAAACTACGCGAATGACTTATTCA 57.285 33.333 15.93 0.00 44.42 2.57
1495 1545 7.009907 ACCTAAAACTACGCGAATGACTTATTC 59.990 37.037 15.93 0.00 41.46 1.75
1496 1546 6.815142 ACCTAAAACTACGCGAATGACTTATT 59.185 34.615 15.93 0.00 0.00 1.40
1497 1547 6.335777 ACCTAAAACTACGCGAATGACTTAT 58.664 36.000 15.93 0.00 0.00 1.73
1498 1548 5.713025 ACCTAAAACTACGCGAATGACTTA 58.287 37.500 15.93 2.18 0.00 2.24
1499 1549 4.563061 ACCTAAAACTACGCGAATGACTT 58.437 39.130 15.93 0.94 0.00 3.01
1500 1550 4.171754 GACCTAAAACTACGCGAATGACT 58.828 43.478 15.93 0.00 0.00 3.41
1501 1551 3.001365 CGACCTAAAACTACGCGAATGAC 60.001 47.826 15.93 0.00 0.00 3.06
1502 1552 3.119884 TCGACCTAAAACTACGCGAATGA 60.120 43.478 15.93 0.00 0.00 2.57
1503 1553 3.173599 TCGACCTAAAACTACGCGAATG 58.826 45.455 15.93 4.47 0.00 2.67
1504 1554 3.492421 TCGACCTAAAACTACGCGAAT 57.508 42.857 15.93 0.00 0.00 3.34
1505 1555 2.987413 TCGACCTAAAACTACGCGAA 57.013 45.000 15.93 0.00 0.00 4.70
1506 1556 2.419673 TCATCGACCTAAAACTACGCGA 59.580 45.455 15.93 0.00 0.00 5.87
1507 1557 2.789208 TCATCGACCTAAAACTACGCG 58.211 47.619 3.53 3.53 0.00 6.01
1508 1558 5.713822 AAATCATCGACCTAAAACTACGC 57.286 39.130 0.00 0.00 0.00 4.42
1509 1559 8.403606 AGTTAAATCATCGACCTAAAACTACG 57.596 34.615 0.00 0.00 0.00 3.51
1637 1687 8.504815 CGTAGTTCTAGATCATCGATTTAAGGA 58.495 37.037 0.00 0.00 0.00 3.36
1638 1688 7.271653 GCGTAGTTCTAGATCATCGATTTAAGG 59.728 40.741 16.26 0.00 0.00 2.69
1639 1689 7.006653 CGCGTAGTTCTAGATCATCGATTTAAG 59.993 40.741 16.26 0.00 0.00 1.85
1640 1690 6.795593 CGCGTAGTTCTAGATCATCGATTTAA 59.204 38.462 16.26 0.00 0.00 1.52
1641 1691 6.146673 TCGCGTAGTTCTAGATCATCGATTTA 59.853 38.462 5.77 0.00 0.00 1.40
1642 1692 5.049612 TCGCGTAGTTCTAGATCATCGATTT 60.050 40.000 5.77 0.00 0.00 2.17
1643 1693 4.451435 TCGCGTAGTTCTAGATCATCGATT 59.549 41.667 5.77 0.00 0.00 3.34
1644 1694 3.995048 TCGCGTAGTTCTAGATCATCGAT 59.005 43.478 5.77 0.00 0.00 3.59
1645 1695 3.387397 TCGCGTAGTTCTAGATCATCGA 58.613 45.455 5.77 10.22 0.00 3.59
1646 1696 3.790212 TCGCGTAGTTCTAGATCATCG 57.210 47.619 5.77 8.02 0.00 3.84
1647 1697 5.566016 GTCATTCGCGTAGTTCTAGATCATC 59.434 44.000 5.77 0.00 0.00 2.92
1648 1698 5.239744 AGTCATTCGCGTAGTTCTAGATCAT 59.760 40.000 5.77 0.00 0.00 2.45
1649 1699 4.575236 AGTCATTCGCGTAGTTCTAGATCA 59.425 41.667 5.77 0.00 0.00 2.92
1650 1700 5.098218 AGTCATTCGCGTAGTTCTAGATC 57.902 43.478 5.77 0.00 0.00 2.75
1651 1701 5.502153 AAGTCATTCGCGTAGTTCTAGAT 57.498 39.130 5.77 0.00 0.00 1.98
1652 1702 4.959596 AAGTCATTCGCGTAGTTCTAGA 57.040 40.909 5.77 0.00 0.00 2.43
1653 1703 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
1654 1704 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
1655 1705 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
1656 1706 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
1657 1707 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
1664 1714 8.648557 TTCCATCTAAGTGAATAAGTCATTCG 57.351 34.615 0.00 0.00 45.25 3.34
1665 1715 9.606631 ACTTCCATCTAAGTGAATAAGTCATTC 57.393 33.333 0.00 0.00 43.01 2.67
1668 1718 9.256228 ACTACTTCCATCTAAGTGAATAAGTCA 57.744 33.333 0.00 0.00 39.95 3.41
1681 1731 9.529823 ACGGATGATAATTACTACTTCCATCTA 57.470 33.333 14.96 0.00 32.26 1.98
1682 1732 8.423906 ACGGATGATAATTACTACTTCCATCT 57.576 34.615 14.96 0.00 32.26 2.90
1747 1798 1.859383 TGTGACGATTGACGAAGCAA 58.141 45.000 0.00 0.00 45.77 3.91
1786 1838 4.342378 TGGCAGGTAGTAAATCTCAGCTAG 59.658 45.833 0.00 0.00 0.00 3.42
1852 1905 4.111016 CTGCGCCACCACAGCATG 62.111 66.667 4.18 0.00 46.00 4.06
1853 1906 4.334118 TCTGCGCCACCACAGCAT 62.334 61.111 4.18 0.00 40.35 3.79
1854 1907 4.994471 CTCTGCGCCACCACAGCA 62.994 66.667 4.18 0.00 39.25 4.41
1917 1999 3.948719 GTGGCCGTGGAAGGTCCA 61.949 66.667 0.00 0.00 45.98 4.02
1920 2002 1.076632 TTTTGTGGCCGTGGAAGGT 60.077 52.632 0.00 0.00 0.00 3.50
2042 2130 6.924612 TCTGACGTGTTAGTAATAACTTTGCA 59.075 34.615 13.68 6.80 37.15 4.08
2043 2131 7.115947 ACTCTGACGTGTTAGTAATAACTTTGC 59.884 37.037 13.68 3.05 37.15 3.68
2059 2150 2.544686 CTCCCTCGTATACTCTGACGTG 59.455 54.545 0.00 0.00 40.00 4.49
2091 2182 5.348986 CACGGCATTACTCACTGTTACTAT 58.651 41.667 0.00 0.00 0.00 2.12
2102 2198 2.364324 TCCATCTACCACGGCATTACTC 59.636 50.000 0.00 0.00 0.00 2.59
2103 2199 2.365617 CTCCATCTACCACGGCATTACT 59.634 50.000 0.00 0.00 0.00 2.24
2108 2218 2.063979 CCCTCCATCTACCACGGCA 61.064 63.158 0.00 0.00 0.00 5.69
2140 2251 9.414295 TGCAATCTATACCAAATATGTACGTAC 57.586 33.333 18.90 18.90 0.00 3.67
2141 2252 9.984190 TTGCAATCTATACCAAATATGTACGTA 57.016 29.630 0.00 0.00 0.00 3.57
2142 2253 8.770828 GTTGCAATCTATACCAAATATGTACGT 58.229 33.333 0.59 0.00 0.00 3.57
2143 2254 7.949962 CGTTGCAATCTATACCAAATATGTACG 59.050 37.037 0.59 0.00 0.00 3.67
2159 2270 1.003972 CACGTGTGTTCGTTGCAATCT 60.004 47.619 7.58 0.00 42.27 2.40
2165 2276 0.996462 ACTGTCACGTGTGTTCGTTG 59.004 50.000 16.51 1.56 42.27 4.10
2167 2278 1.135199 AGAACTGTCACGTGTGTTCGT 60.135 47.619 27.58 19.89 45.10 3.85
2168 2279 1.556564 AGAACTGTCACGTGTGTTCG 58.443 50.000 27.58 14.41 42.29 3.95
2169 2280 4.802039 TCTTTAGAACTGTCACGTGTGTTC 59.198 41.667 27.24 27.24 39.06 3.18
2171 2282 4.380841 TCTTTAGAACTGTCACGTGTGT 57.619 40.909 16.51 10.32 0.00 3.72
2172 2283 6.150318 ACTATCTTTAGAACTGTCACGTGTG 58.850 40.000 16.51 9.67 0.00 3.82
2201 2313 3.449018 ACACAGGAGGACAATACTAGCAG 59.551 47.826 0.00 0.00 0.00 4.24
2202 2314 3.195610 CACACAGGAGGACAATACTAGCA 59.804 47.826 0.00 0.00 0.00 3.49
2203 2315 3.195825 ACACACAGGAGGACAATACTAGC 59.804 47.826 0.00 0.00 0.00 3.42
2204 2316 4.220821 ACACACACAGGAGGACAATACTAG 59.779 45.833 0.00 0.00 0.00 2.57
2205 2317 4.157246 ACACACACAGGAGGACAATACTA 58.843 43.478 0.00 0.00 0.00 1.82
2206 2318 2.972713 ACACACACAGGAGGACAATACT 59.027 45.455 0.00 0.00 0.00 2.12
2207 2319 3.402628 ACACACACAGGAGGACAATAC 57.597 47.619 0.00 0.00 0.00 1.89
2208 2320 6.211785 TGTTATACACACACAGGAGGACAATA 59.788 38.462 0.00 0.00 0.00 1.90
2209 2321 5.012664 TGTTATACACACACAGGAGGACAAT 59.987 40.000 0.00 0.00 0.00 2.71
2210 2322 4.345547 TGTTATACACACACAGGAGGACAA 59.654 41.667 0.00 0.00 0.00 3.18
2211 2323 3.898741 TGTTATACACACACAGGAGGACA 59.101 43.478 0.00 0.00 0.00 4.02
2212 2324 4.530710 TGTTATACACACACAGGAGGAC 57.469 45.455 0.00 0.00 0.00 3.85
2213 2325 5.071250 AGTTTGTTATACACACACAGGAGGA 59.929 40.000 0.00 0.00 38.39 3.71
2214 2326 5.305585 AGTTTGTTATACACACACAGGAGG 58.694 41.667 0.00 0.00 38.39 4.30
2215 2327 6.861065 AAGTTTGTTATACACACACAGGAG 57.139 37.500 0.00 0.00 38.39 3.69
2216 2328 7.502696 AGTAAGTTTGTTATACACACACAGGA 58.497 34.615 0.00 0.00 38.39 3.86
2217 2329 7.724305 AGTAAGTTTGTTATACACACACAGG 57.276 36.000 0.00 0.00 38.39 4.00
2224 2336 9.223099 ACCACCATTAGTAAGTTTGTTATACAC 57.777 33.333 0.00 0.00 0.00 2.90
2240 2352 7.307692 GCCACAAAAACAAAATACCACCATTAG 60.308 37.037 0.00 0.00 0.00 1.73
2259 2371 2.335052 GACAGCTGCAACGCCACAAA 62.335 55.000 15.27 0.00 0.00 2.83
2493 2605 0.969149 CAGTGGCAGTGGTAGAGTGA 59.031 55.000 14.66 0.00 0.00 3.41
2495 2607 1.674057 GCAGTGGCAGTGGTAGAGT 59.326 57.895 22.98 0.00 40.72 3.24
2533 2645 2.324860 CGCACATCGTCAGTCACTTTA 58.675 47.619 0.00 0.00 0.00 1.85
2710 2834 0.108945 AGGGCGCGTACTTGTAGTTC 60.109 55.000 8.43 0.00 0.00 3.01
2740 2864 0.903454 GGAGGGACAGGTCGGAGAAA 60.903 60.000 0.00 0.00 39.69 2.52
2752 2876 3.917760 CGGCATCCTCGGAGGGAC 61.918 72.222 23.39 10.00 38.30 4.46
2833 2975 1.065928 GTAGTCGGCCGTCATGAGG 59.934 63.158 27.15 8.47 0.00 3.86
3107 3249 2.028658 CCTGTCAAGTAAGAGCTCAGCA 60.029 50.000 17.77 0.00 0.00 4.41
3179 3321 3.105283 ACCAACCTATACAGAGACACCC 58.895 50.000 0.00 0.00 0.00 4.61
3201 3343 8.822805 AGAAACAATGAACTACTAATCCCTACA 58.177 33.333 0.00 0.00 0.00 2.74
3300 3444 5.009310 GGAGGAAAAAGAAGCCGAAAGTAAA 59.991 40.000 0.00 0.00 0.00 2.01
3301 3445 4.517832 GGAGGAAAAAGAAGCCGAAAGTAA 59.482 41.667 0.00 0.00 0.00 2.24
3315 3459 4.769345 AATGGTGCTTTTGGAGGAAAAA 57.231 36.364 0.00 0.00 33.04 1.94
3316 3460 4.769345 AAATGGTGCTTTTGGAGGAAAA 57.231 36.364 0.00 0.00 32.44 2.29
3342 3486 3.498397 TCGAGCACTGGAACAAAATCTTC 59.502 43.478 0.00 0.00 38.70 2.87
3588 3739 1.227943 GGGACACACTGCTCTGCAA 60.228 57.895 0.00 0.00 38.41 4.08
3614 3767 8.174994 ACTTATATTATCCCATTATGGCCAGT 57.825 34.615 13.05 1.84 35.79 4.00
3615 3768 9.784531 CTACTTATATTATCCCATTATGGCCAG 57.215 37.037 13.05 0.00 35.79 4.85
3616 3769 9.291516 ACTACTTATATTATCCCATTATGGCCA 57.708 33.333 8.56 8.56 35.79 5.36
3631 3784 7.607991 GCCCAAGTGCATGATACTACTTATATT 59.392 37.037 0.00 0.00 32.53 1.28
3632 3785 7.038017 AGCCCAAGTGCATGATACTACTTATAT 60.038 37.037 0.00 0.00 32.53 0.86
3633 3786 6.270000 AGCCCAAGTGCATGATACTACTTATA 59.730 38.462 0.00 0.00 32.53 0.98
3634 3787 5.072329 AGCCCAAGTGCATGATACTACTTAT 59.928 40.000 0.00 0.00 32.53 1.73
3635 3788 4.408921 AGCCCAAGTGCATGATACTACTTA 59.591 41.667 0.00 0.00 32.53 2.24
3636 3789 3.200825 AGCCCAAGTGCATGATACTACTT 59.799 43.478 0.00 0.00 33.94 2.24
3637 3790 2.774234 AGCCCAAGTGCATGATACTACT 59.226 45.455 0.00 0.00 0.00 2.57
3638 3791 3.134458 GAGCCCAAGTGCATGATACTAC 58.866 50.000 0.00 0.00 0.00 2.73
3639 3792 2.771372 TGAGCCCAAGTGCATGATACTA 59.229 45.455 0.00 0.00 0.00 1.82
3640 3793 1.561076 TGAGCCCAAGTGCATGATACT 59.439 47.619 0.00 0.00 0.00 2.12
3641 3794 1.672881 GTGAGCCCAAGTGCATGATAC 59.327 52.381 0.00 0.00 0.00 2.24
3642 3795 1.281577 TGTGAGCCCAAGTGCATGATA 59.718 47.619 0.00 0.00 0.00 2.15
3643 3796 0.038599 TGTGAGCCCAAGTGCATGAT 59.961 50.000 0.00 0.00 0.00 2.45
3644 3797 0.178995 TTGTGAGCCCAAGTGCATGA 60.179 50.000 0.00 0.00 0.00 3.07
3645 3798 0.675083 TTTGTGAGCCCAAGTGCATG 59.325 50.000 0.00 0.00 0.00 4.06
3646 3799 0.675633 GTTTGTGAGCCCAAGTGCAT 59.324 50.000 0.00 0.00 0.00 3.96
3647 3800 0.682532 TGTTTGTGAGCCCAAGTGCA 60.683 50.000 0.00 0.00 0.00 4.57
3648 3801 0.675633 ATGTTTGTGAGCCCAAGTGC 59.324 50.000 0.00 0.00 0.00 4.40
3649 3802 1.603678 GCATGTTTGTGAGCCCAAGTG 60.604 52.381 0.00 0.00 0.00 3.16
3650 3803 0.675633 GCATGTTTGTGAGCCCAAGT 59.324 50.000 0.00 0.00 0.00 3.16
3651 3804 0.963962 AGCATGTTTGTGAGCCCAAG 59.036 50.000 0.00 0.00 0.00 3.61
3652 3805 1.412079 AAGCATGTTTGTGAGCCCAA 58.588 45.000 0.00 0.00 0.00 4.12
3653 3806 2.284754 TAAGCATGTTTGTGAGCCCA 57.715 45.000 4.89 0.00 0.00 5.36
3654 3807 2.493278 ACATAAGCATGTTTGTGAGCCC 59.507 45.455 22.45 0.00 42.98 5.19
3655 3808 3.191162 TCACATAAGCATGTTTGTGAGCC 59.809 43.478 22.45 0.00 42.98 4.70
3656 3809 4.161333 GTCACATAAGCATGTTTGTGAGC 58.839 43.478 22.45 11.53 46.47 4.26
3657 3810 5.179929 TCTGTCACATAAGCATGTTTGTGAG 59.820 40.000 22.45 15.82 46.47 3.51
3658 3811 5.049474 GTCTGTCACATAAGCATGTTTGTGA 60.049 40.000 22.45 16.98 42.98 3.58
3659 3812 5.149273 GTCTGTCACATAAGCATGTTTGTG 58.851 41.667 15.72 15.72 42.98 3.33
3660 3813 4.821260 TGTCTGTCACATAAGCATGTTTGT 59.179 37.500 4.89 0.00 42.98 2.83
3661 3814 5.149273 GTGTCTGTCACATAAGCATGTTTG 58.851 41.667 4.89 0.00 42.98 2.93
3662 3815 5.362556 GTGTCTGTCACATAAGCATGTTT 57.637 39.130 0.00 0.00 42.98 2.83
3689 3842 7.454225 CCTCTATAGCTAGCCTAACCATTTTT 58.546 38.462 12.13 0.00 0.00 1.94
3690 3843 6.013293 CCCTCTATAGCTAGCCTAACCATTTT 60.013 42.308 12.13 0.00 0.00 1.82
3691 3844 5.485708 CCCTCTATAGCTAGCCTAACCATTT 59.514 44.000 12.13 0.00 0.00 2.32
3692 3845 5.026790 CCCTCTATAGCTAGCCTAACCATT 58.973 45.833 12.13 0.00 0.00 3.16
3693 3846 4.295238 TCCCTCTATAGCTAGCCTAACCAT 59.705 45.833 12.13 0.00 0.00 3.55
3694 3847 3.661161 TCCCTCTATAGCTAGCCTAACCA 59.339 47.826 12.13 0.00 0.00 3.67
3695 3848 4.264038 ACTCCCTCTATAGCTAGCCTAACC 60.264 50.000 12.13 0.00 0.00 2.85
3696 3849 4.925836 ACTCCCTCTATAGCTAGCCTAAC 58.074 47.826 12.13 0.00 0.00 2.34
3697 3850 6.447409 TGATACTCCCTCTATAGCTAGCCTAA 59.553 42.308 12.13 0.00 0.00 2.69
3698 3851 5.971260 TGATACTCCCTCTATAGCTAGCCTA 59.029 44.000 12.13 3.68 0.00 3.93
3699 3852 4.791334 TGATACTCCCTCTATAGCTAGCCT 59.209 45.833 12.13 1.34 0.00 4.58
3700 3853 5.118729 TGATACTCCCTCTATAGCTAGCC 57.881 47.826 12.13 0.00 0.00 3.93
3701 3854 6.126409 ACATGATACTCCCTCTATAGCTAGC 58.874 44.000 6.62 6.62 0.00 3.42
3702 3855 8.491134 AGTACATGATACTCCCTCTATAGCTAG 58.509 40.741 0.00 0.00 0.00 3.42
3703 3856 8.395288 AGTACATGATACTCCCTCTATAGCTA 57.605 38.462 0.00 0.00 0.00 3.32
3704 3857 7.278724 AGTACATGATACTCCCTCTATAGCT 57.721 40.000 0.00 0.00 0.00 3.32
3705 3858 7.948034 AAGTACATGATACTCCCTCTATAGC 57.052 40.000 0.00 0.00 0.00 2.97
3706 3859 9.621629 CCTAAGTACATGATACTCCCTCTATAG 57.378 40.741 0.00 0.00 0.00 1.31
3707 3860 9.347777 TCCTAAGTACATGATACTCCCTCTATA 57.652 37.037 0.00 0.00 0.00 1.31
3708 3861 8.110908 GTCCTAAGTACATGATACTCCCTCTAT 58.889 40.741 0.00 0.00 0.00 1.98
3709 3862 7.295196 AGTCCTAAGTACATGATACTCCCTCTA 59.705 40.741 0.00 0.00 0.00 2.43
3710 3863 6.103501 AGTCCTAAGTACATGATACTCCCTCT 59.896 42.308 0.00 0.00 0.00 3.69
3711 3864 6.308566 AGTCCTAAGTACATGATACTCCCTC 58.691 44.000 0.00 0.00 0.00 4.30
3712 3865 6.282568 AGTCCTAAGTACATGATACTCCCT 57.717 41.667 0.00 0.00 0.00 4.20
3713 3866 5.181622 CGAGTCCTAAGTACATGATACTCCC 59.818 48.000 0.00 0.00 30.72 4.30
3714 3867 5.335035 GCGAGTCCTAAGTACATGATACTCC 60.335 48.000 0.00 0.00 30.72 3.85
3715 3868 5.238868 TGCGAGTCCTAAGTACATGATACTC 59.761 44.000 0.00 1.90 0.00 2.59
3716 3869 5.131067 TGCGAGTCCTAAGTACATGATACT 58.869 41.667 0.00 0.69 0.00 2.12
3717 3870 5.434352 TGCGAGTCCTAAGTACATGATAC 57.566 43.478 0.00 0.00 0.00 2.24
3718 3871 6.127563 TGTTTGCGAGTCCTAAGTACATGATA 60.128 38.462 0.00 0.00 0.00 2.15
3719 3872 5.109903 GTTTGCGAGTCCTAAGTACATGAT 58.890 41.667 0.00 0.00 0.00 2.45
3720 3873 4.021807 TGTTTGCGAGTCCTAAGTACATGA 60.022 41.667 0.00 0.00 0.00 3.07
3721 3874 4.242475 TGTTTGCGAGTCCTAAGTACATG 58.758 43.478 0.00 0.00 0.00 3.21
3722 3875 4.530710 TGTTTGCGAGTCCTAAGTACAT 57.469 40.909 0.00 0.00 0.00 2.29
3723 3876 4.242475 CATGTTTGCGAGTCCTAAGTACA 58.758 43.478 0.00 0.00 0.00 2.90
3724 3877 3.062234 GCATGTTTGCGAGTCCTAAGTAC 59.938 47.826 0.00 0.00 39.49 2.73
3725 3878 3.259064 GCATGTTTGCGAGTCCTAAGTA 58.741 45.455 0.00 0.00 39.49 2.24
3726 3879 2.076863 GCATGTTTGCGAGTCCTAAGT 58.923 47.619 0.00 0.00 39.49 2.24
3727 3880 2.813779 GCATGTTTGCGAGTCCTAAG 57.186 50.000 0.00 0.00 39.49 2.18
3738 3891 2.883574 CCTGCCACATAAGCATGTTTG 58.116 47.619 4.89 0.00 42.98 2.93
3739 3892 1.205417 GCCTGCCACATAAGCATGTTT 59.795 47.619 0.00 0.00 42.98 2.83
3740 3893 0.819582 GCCTGCCACATAAGCATGTT 59.180 50.000 0.00 0.00 42.98 2.71
3741 3894 0.323633 TGCCTGCCACATAAGCATGT 60.324 50.000 0.00 0.00 46.58 3.21
3742 3895 0.818938 TTGCCTGCCACATAAGCATG 59.181 50.000 0.00 0.00 40.04 4.06
3743 3896 1.784358 ATTGCCTGCCACATAAGCAT 58.216 45.000 0.00 0.00 40.04 3.79
3744 3897 1.559368 AATTGCCTGCCACATAAGCA 58.441 45.000 0.00 0.00 38.82 3.91
3745 3898 3.799281 TTAATTGCCTGCCACATAAGC 57.201 42.857 0.00 0.00 0.00 3.09
3746 3899 5.581126 TCTTTAATTGCCTGCCACATAAG 57.419 39.130 0.00 0.00 0.00 1.73
3747 3900 5.714333 TCTTCTTTAATTGCCTGCCACATAA 59.286 36.000 0.00 0.00 0.00 1.90
3748 3901 5.260424 TCTTCTTTAATTGCCTGCCACATA 58.740 37.500 0.00 0.00 0.00 2.29
3749 3902 4.088634 TCTTCTTTAATTGCCTGCCACAT 58.911 39.130 0.00 0.00 0.00 3.21
3750 3903 3.495331 TCTTCTTTAATTGCCTGCCACA 58.505 40.909 0.00 0.00 0.00 4.17
3751 3904 4.519540 TTCTTCTTTAATTGCCTGCCAC 57.480 40.909 0.00 0.00 0.00 5.01
3752 3905 4.832266 TCTTTCTTCTTTAATTGCCTGCCA 59.168 37.500 0.00 0.00 0.00 4.92
3753 3906 5.183904 TCTCTTTCTTCTTTAATTGCCTGCC 59.816 40.000 0.00 0.00 0.00 4.85
3754 3907 6.150140 TCTCTCTTTCTTCTTTAATTGCCTGC 59.850 38.462 0.00 0.00 0.00 4.85
3755 3908 7.390162 ACTCTCTCTTTCTTCTTTAATTGCCTG 59.610 37.037 0.00 0.00 0.00 4.85
3756 3909 7.457561 ACTCTCTCTTTCTTCTTTAATTGCCT 58.542 34.615 0.00 0.00 0.00 4.75
3757 3910 7.389053 TGACTCTCTCTTTCTTCTTTAATTGCC 59.611 37.037 0.00 0.00 0.00 4.52
3758 3911 8.316640 TGACTCTCTCTTTCTTCTTTAATTGC 57.683 34.615 0.00 0.00 0.00 3.56
3814 3967 8.631797 TGCATGACACATAATAGCATAACATTT 58.368 29.630 0.00 0.00 0.00 2.32
3815 3968 8.168790 TGCATGACACATAATAGCATAACATT 57.831 30.769 0.00 0.00 0.00 2.71
3816 3969 7.748691 TGCATGACACATAATAGCATAACAT 57.251 32.000 0.00 0.00 0.00 2.71
3817 3970 7.308710 CCATGCATGACACATAATAGCATAACA 60.309 37.037 28.31 0.00 39.00 2.41
3818 3971 7.025365 CCATGCATGACACATAATAGCATAAC 58.975 38.462 28.31 0.00 39.00 1.89
3819 3972 6.349528 GCCATGCATGACACATAATAGCATAA 60.350 38.462 28.31 0.00 39.00 1.90
3820 3973 5.124297 GCCATGCATGACACATAATAGCATA 59.876 40.000 28.31 0.00 39.00 3.14
3821 3974 4.082408 GCCATGCATGACACATAATAGCAT 60.082 41.667 28.31 0.00 41.42 3.79
3822 3975 3.253921 GCCATGCATGACACATAATAGCA 59.746 43.478 28.31 0.00 34.78 3.49
3823 3976 3.253921 TGCCATGCATGACACATAATAGC 59.746 43.478 28.31 17.58 31.71 2.97
3824 3977 5.441709 TTGCCATGCATGACACATAATAG 57.558 39.130 28.31 8.01 38.76 1.73
3825 3978 7.521871 TTATTGCCATGCATGACACATAATA 57.478 32.000 28.31 13.74 38.76 0.98
3826 3979 4.948341 ATTGCCATGCATGACACATAAT 57.052 36.364 28.31 10.05 38.76 1.28
3827 3980 5.848833 TTATTGCCATGCATGACACATAA 57.151 34.783 28.31 21.59 38.76 1.90
3828 3981 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
3829 3982 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
3830 3983 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
3831 3984 6.418819 GTCTTATTTATTGCCATGCATGACAC 59.581 38.462 28.31 16.49 38.76 3.67
3832 3985 6.461370 GGTCTTATTTATTGCCATGCATGACA 60.461 38.462 28.31 20.53 38.76 3.58
3833 3986 5.922544 GGTCTTATTTATTGCCATGCATGAC 59.077 40.000 28.31 17.77 38.76 3.06
3834 3987 5.597594 TGGTCTTATTTATTGCCATGCATGA 59.402 36.000 28.31 8.76 38.76 3.07
3835 3988 5.845103 TGGTCTTATTTATTGCCATGCATG 58.155 37.500 20.19 20.19 38.76 4.06
3836 3989 6.098695 AGTTGGTCTTATTTATTGCCATGCAT 59.901 34.615 0.00 0.00 38.76 3.96
3837 3990 5.421693 AGTTGGTCTTATTTATTGCCATGCA 59.578 36.000 0.00 0.00 36.47 3.96
3838 3991 5.906073 AGTTGGTCTTATTTATTGCCATGC 58.094 37.500 0.00 0.00 0.00 4.06
3839 3992 8.849168 TCATAGTTGGTCTTATTTATTGCCATG 58.151 33.333 0.00 0.00 0.00 3.66
3840 3993 8.995027 TCATAGTTGGTCTTATTTATTGCCAT 57.005 30.769 0.00 0.00 0.00 4.40
3841 3994 8.995027 ATCATAGTTGGTCTTATTTATTGCCA 57.005 30.769 0.00 0.00 0.00 4.92
3887 4040 9.700831 AGTGTATGATACTATATCCATAGTGCA 57.299 33.333 4.03 6.23 45.62 4.57
3923 4076 9.293404 GGGAGTAACATACACTAGTATCATGTA 57.707 37.037 13.55 5.01 38.88 2.29
3924 4077 7.232941 GGGGAGTAACATACACTAGTATCATGT 59.767 40.741 0.00 2.76 38.88 3.21
3925 4078 7.232737 TGGGGAGTAACATACACTAGTATCATG 59.767 40.741 0.00 2.10 38.88 3.07
3926 4079 7.232941 GTGGGGAGTAACATACACTAGTATCAT 59.767 40.741 0.00 0.00 38.88 2.45
3927 4080 6.548622 GTGGGGAGTAACATACACTAGTATCA 59.451 42.308 0.00 0.00 38.88 2.15
3928 4081 6.776603 AGTGGGGAGTAACATACACTAGTATC 59.223 42.308 0.00 0.00 38.88 2.24
3929 4082 6.680540 AGTGGGGAGTAACATACACTAGTAT 58.319 40.000 0.00 0.00 41.57 2.12
3930 4083 6.083487 AGTGGGGAGTAACATACACTAGTA 57.917 41.667 0.00 0.00 37.41 1.82
3931 4084 4.944177 AGTGGGGAGTAACATACACTAGT 58.056 43.478 0.00 0.00 37.41 2.57
3932 4085 6.776116 TCATAGTGGGGAGTAACATACACTAG 59.224 42.308 0.00 0.00 42.51 2.57
3933 4086 6.548622 GTCATAGTGGGGAGTAACATACACTA 59.451 42.308 0.00 0.00 43.13 2.74
3934 4087 5.363005 GTCATAGTGGGGAGTAACATACACT 59.637 44.000 0.00 0.00 41.52 3.55
3935 4088 5.452917 GGTCATAGTGGGGAGTAACATACAC 60.453 48.000 0.00 0.00 0.00 2.90
3936 4089 4.652421 GGTCATAGTGGGGAGTAACATACA 59.348 45.833 0.00 0.00 0.00 2.29
3937 4090 4.652421 TGGTCATAGTGGGGAGTAACATAC 59.348 45.833 0.00 0.00 0.00 2.39
3938 4091 4.886163 TGGTCATAGTGGGGAGTAACATA 58.114 43.478 0.00 0.00 0.00 2.29
3939 4092 3.711704 CTGGTCATAGTGGGGAGTAACAT 59.288 47.826 0.00 0.00 0.00 2.71
3940 4093 3.104512 CTGGTCATAGTGGGGAGTAACA 58.895 50.000 0.00 0.00 0.00 2.41
3941 4094 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3942 4095 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3943 4096 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
3944 4097 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
3945 4098 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
3946 4099 0.691078 GAGGCTGGTCATAGTGGGGA 60.691 60.000 0.00 0.00 0.00 4.81
3947 4100 0.982852 TGAGGCTGGTCATAGTGGGG 60.983 60.000 0.00 0.00 0.00 4.96
3948 4101 1.135094 ATGAGGCTGGTCATAGTGGG 58.865 55.000 0.00 0.00 35.30 4.61
3949 4102 3.674528 CTATGAGGCTGGTCATAGTGG 57.325 52.381 16.73 1.45 46.23 4.00
3953 4106 7.238710 TCTATGTTACTATGAGGCTGGTCATA 58.761 38.462 0.00 0.00 38.21 2.15
3954 4107 6.077993 TCTATGTTACTATGAGGCTGGTCAT 58.922 40.000 0.00 0.00 40.40 3.06
3955 4108 5.454966 TCTATGTTACTATGAGGCTGGTCA 58.545 41.667 0.00 0.00 0.00 4.02
3956 4109 6.597832 ATCTATGTTACTATGAGGCTGGTC 57.402 41.667 0.00 0.00 0.00 4.02
3957 4110 7.471041 TCTATCTATGTTACTATGAGGCTGGT 58.529 38.462 0.00 0.00 0.00 4.00
3958 4111 7.946381 TCTATCTATGTTACTATGAGGCTGG 57.054 40.000 0.00 0.00 0.00 4.85
3960 4113 9.635404 GGTATCTATCTATGTTACTATGAGGCT 57.365 37.037 0.00 0.00 0.00 4.58
3961 4114 8.561212 CGGTATCTATCTATGTTACTATGAGGC 58.439 40.741 0.00 0.00 0.00 4.70
3962 4115 9.616156 ACGGTATCTATCTATGTTACTATGAGG 57.384 37.037 0.00 0.00 0.00 3.86
4010 4163 9.647918 AGTCTCATTTATAGTGGAATCTCTACA 57.352 33.333 0.00 0.00 29.47 2.74
4013 4166 9.875708 AGTAGTCTCATTTATAGTGGAATCTCT 57.124 33.333 0.00 0.00 0.00 3.10
4015 4168 9.647918 TGAGTAGTCTCATTTATAGTGGAATCT 57.352 33.333 0.00 0.00 44.58 2.40
4032 4185 9.953565 GGAGTAGATTAGTATCATGAGTAGTCT 57.046 37.037 0.09 7.08 32.95 3.24
4033 4186 9.169592 GGGAGTAGATTAGTATCATGAGTAGTC 57.830 40.741 0.09 0.00 32.95 2.59
4034 4187 8.896658 AGGGAGTAGATTAGTATCATGAGTAGT 58.103 37.037 0.09 0.24 32.95 2.73
4035 4188 9.391006 GAGGGAGTAGATTAGTATCATGAGTAG 57.609 40.741 0.09 0.00 32.95 2.57
4036 4189 8.330247 GGAGGGAGTAGATTAGTATCATGAGTA 58.670 40.741 0.09 0.00 32.95 2.59
4037 4190 7.179269 GGAGGGAGTAGATTAGTATCATGAGT 58.821 42.308 0.09 0.00 32.95 3.41
4038 4191 7.178573 TGGAGGGAGTAGATTAGTATCATGAG 58.821 42.308 0.09 0.00 32.95 2.90
4039 4192 7.103745 TGGAGGGAGTAGATTAGTATCATGA 57.896 40.000 0.00 0.00 32.95 3.07
4040 4193 7.969690 ATGGAGGGAGTAGATTAGTATCATG 57.030 40.000 0.00 0.00 32.95 3.07
4041 4194 7.621683 GGAATGGAGGGAGTAGATTAGTATCAT 59.378 40.741 0.00 0.00 32.95 2.45
4042 4195 6.954684 GGAATGGAGGGAGTAGATTAGTATCA 59.045 42.308 0.00 0.00 32.95 2.15
4043 4196 7.186268 AGGAATGGAGGGAGTAGATTAGTATC 58.814 42.308 0.00 0.00 0.00 2.24
4044 4197 7.122311 AGGAATGGAGGGAGTAGATTAGTAT 57.878 40.000 0.00 0.00 0.00 2.12
4045 4198 6.547396 AGGAATGGAGGGAGTAGATTAGTA 57.453 41.667 0.00 0.00 0.00 1.82
4046 4199 5.426325 AGGAATGGAGGGAGTAGATTAGT 57.574 43.478 0.00 0.00 0.00 2.24
4047 4200 7.857404 TTTAGGAATGGAGGGAGTAGATTAG 57.143 40.000 0.00 0.00 0.00 1.73
4048 4201 7.794683 ACATTTAGGAATGGAGGGAGTAGATTA 59.205 37.037 4.39 0.00 45.56 1.75
4049 4202 6.621514 ACATTTAGGAATGGAGGGAGTAGATT 59.378 38.462 4.39 0.00 45.56 2.40
4050 4203 6.153924 ACATTTAGGAATGGAGGGAGTAGAT 58.846 40.000 4.39 0.00 45.56 1.98
4051 4204 5.538877 ACATTTAGGAATGGAGGGAGTAGA 58.461 41.667 4.39 0.00 45.56 2.59
4052 4205 5.896073 ACATTTAGGAATGGAGGGAGTAG 57.104 43.478 4.39 0.00 45.56 2.57
4053 4206 6.906901 ACTTACATTTAGGAATGGAGGGAGTA 59.093 38.462 4.39 0.00 45.56 2.59
4054 4207 5.731678 ACTTACATTTAGGAATGGAGGGAGT 59.268 40.000 4.39 0.00 45.56 3.85
4055 4208 6.253946 ACTTACATTTAGGAATGGAGGGAG 57.746 41.667 4.39 0.00 45.56 4.30
4056 4209 6.652205 AACTTACATTTAGGAATGGAGGGA 57.348 37.500 4.39 0.00 45.56 4.20
4057 4210 7.718334 AAAACTTACATTTAGGAATGGAGGG 57.282 36.000 4.39 0.00 45.56 4.30
4058 4211 8.585018 ACAAAAACTTACATTTAGGAATGGAGG 58.415 33.333 4.39 0.00 45.56 4.30
4080 4233 9.719355 TGCAGTTTATAGTGAAATCTCTACAAA 57.281 29.630 0.00 0.00 0.00 2.83
4081 4234 9.890629 ATGCAGTTTATAGTGAAATCTCTACAA 57.109 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.