Multiple sequence alignment - TraesCS6B01G293300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G293300 chr6B 100.000 2918 0 0 1 2918 526799152 526796235 0.000000e+00 5389.0
1 TraesCS6B01G293300 chr6B 83.382 686 114 0 998 1683 171728463 171727778 1.140000e-178 636.0
2 TraesCS6B01G293300 chr6B 83.383 674 102 9 997 1665 98992220 98992888 1.490000e-172 616.0
3 TraesCS6B01G293300 chr6B 81.938 454 78 4 1457 1908 98992224 98992675 5.900000e-102 381.0
4 TraesCS6B01G293300 chr6B 81.863 408 71 3 1513 1918 92532039 92531633 1.000000e-89 340.0
5 TraesCS6B01G293300 chr6D 93.392 1922 97 13 12 1912 351985645 351987557 0.000000e+00 2819.0
6 TraesCS6B01G293300 chr6D 88.948 1511 137 13 1000 2490 351986871 351988371 0.000000e+00 1838.0
7 TraesCS6B01G293300 chr6D 87.773 229 16 5 2532 2759 351988690 351988907 1.040000e-64 257.0
8 TraesCS6B01G293300 chr6A 87.843 1201 115 15 1000 2173 490999150 490997954 0.000000e+00 1380.0
9 TraesCS6B01G293300 chr6A 90.192 989 47 18 219 1186 491000458 490999499 0.000000e+00 1243.0
10 TraesCS6B01G293300 chr6A 91.792 731 57 3 1183 1912 490999195 490998467 0.000000e+00 1014.0
11 TraesCS6B01G293300 chr6A 88.451 355 22 10 2406 2759 490991900 490991564 7.530000e-111 411.0
12 TraesCS6B01G293300 chr6A 94.271 192 10 1 1 192 491000818 491000628 2.840000e-75 292.0
13 TraesCS6B01G293300 chr2D 84.157 688 103 5 998 1683 520583526 520582843 0.000000e+00 662.0
14 TraesCS6B01G293300 chrUn 83.913 690 107 3 997 1684 20705500 20706187 0.000000e+00 656.0
15 TraesCS6B01G293300 chr7A 82.849 688 118 0 997 1684 647917454 647916767 4.130000e-173 617.0
16 TraesCS6B01G293300 chr2B 96.875 32 1 0 1671 1702 461199293 461199262 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G293300 chr6B 526796235 526799152 2917 True 5389.00 5389 100.000000 1 2918 1 chr6B.!!$R3 2917
1 TraesCS6B01G293300 chr6B 171727778 171728463 685 True 636.00 636 83.382000 998 1683 1 chr6B.!!$R2 685
2 TraesCS6B01G293300 chr6B 98992220 98992888 668 False 498.50 616 82.660500 997 1908 2 chr6B.!!$F1 911
3 TraesCS6B01G293300 chr6D 351985645 351988907 3262 False 1638.00 2819 90.037667 12 2759 3 chr6D.!!$F1 2747
4 TraesCS6B01G293300 chr6A 490997954 491000818 2864 True 982.25 1380 91.024500 1 2173 4 chr6A.!!$R2 2172
5 TraesCS6B01G293300 chr2D 520582843 520583526 683 True 662.00 662 84.157000 998 1683 1 chr2D.!!$R1 685
6 TraesCS6B01G293300 chrUn 20705500 20706187 687 False 656.00 656 83.913000 997 1684 1 chrUn.!!$F1 687
7 TraesCS6B01G293300 chr7A 647916767 647917454 687 True 617.00 617 82.849000 997 1684 1 chr7A.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.248289 TGGTTTAGGTCTAGTGCCGC 59.752 55.0 0.0 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2879 0.690762 GCCCAACCCTCAGAAGTACA 59.309 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 4.158025 TGAGATTCGACTGAAACCTAGGTC 59.842 45.833 16.64 4.00 37.71 3.85
212 213 2.005560 GCCGTGGTTTAGGTCTAGTGC 61.006 57.143 0.00 0.00 0.00 4.40
215 216 0.248289 TGGTTTAGGTCTAGTGCCGC 59.752 55.000 0.00 0.00 0.00 6.53
232 377 2.014128 CCGCCGTTCTGATTTATGGTT 58.986 47.619 0.00 0.00 0.00 3.67
333 478 8.947115 TCTGTATGTATACGATTCTAGTGATGG 58.053 37.037 0.00 0.00 36.06 3.51
334 479 8.631480 TGTATGTATACGATTCTAGTGATGGT 57.369 34.615 0.00 0.00 36.06 3.55
336 481 9.985318 GTATGTATACGATTCTAGTGATGGTAC 57.015 37.037 0.00 0.00 0.00 3.34
338 483 8.320396 TGTATACGATTCTAGTGATGGTACTC 57.680 38.462 0.00 0.00 32.19 2.59
339 484 6.821031 ATACGATTCTAGTGATGGTACTCC 57.179 41.667 0.00 0.00 32.19 3.85
482 631 6.710744 GTGGAGTAGAGTTTCTTTTTGGATCA 59.289 38.462 0.00 0.00 0.00 2.92
483 632 7.391833 GTGGAGTAGAGTTTCTTTTTGGATCAT 59.608 37.037 0.00 0.00 0.00 2.45
524 673 6.588719 TGTGATTGGGATTTTGGAGTAAAG 57.411 37.500 0.00 0.00 0.00 1.85
602 753 9.715774 TGAGATAGCATTAGCGCTTGTCTCTTT 62.716 40.741 24.22 10.18 44.52 2.52
630 781 9.089601 CAATCTAGCATTTATCATTGTGCAAAA 57.910 29.630 0.00 0.00 39.94 2.44
654 805 8.712228 AAATGAAGTTTTTAGTTGAGGGATCT 57.288 30.769 0.00 0.00 0.00 2.75
687 838 9.317936 TGTTGATGTTGCAGTATTCTAATCTAG 57.682 33.333 0.00 0.00 0.00 2.43
727 879 3.578688 CAGCTTAAACAATCTGTTGGCC 58.421 45.455 0.00 0.00 40.14 5.36
735 887 4.240881 ACAATCTGTTGGCCATAGATGT 57.759 40.909 25.38 21.64 39.70 3.06
871 1023 8.827677 GTTACTTTAGTATTTCTGGGCTGTATG 58.172 37.037 0.00 0.00 0.00 2.39
963 1135 9.613428 CTGGTCTATCCAAATTCAAATGTAGTA 57.387 33.333 0.00 0.00 46.59 1.82
976 1148 7.851387 TCAAATGTAGTACTGTTTGTTGACA 57.149 32.000 20.86 10.29 34.20 3.58
977 1149 8.445275 TCAAATGTAGTACTGTTTGTTGACAT 57.555 30.769 20.86 11.71 34.20 3.06
1161 1335 2.502492 GCAGCTAGAGGATGGCCGA 61.502 63.158 0.00 0.00 39.96 5.54
1293 1774 1.614413 GAGGTTGAGAGTTCGGACACT 59.386 52.381 0.00 0.00 0.00 3.55
1665 2378 4.484912 AGGAGTCTACTCTTCACTTGGTT 58.515 43.478 9.84 0.00 42.48 3.67
1704 2417 3.362831 GCATGCAGATTTTTGTCAAGACG 59.637 43.478 14.21 0.00 0.00 4.18
1767 2480 3.205338 CACCATCGATAATGTGAAGGCA 58.795 45.455 13.70 0.00 33.13 4.75
2001 2740 0.878416 TGTACTGTTTTGATGCGCCC 59.122 50.000 4.18 0.00 0.00 6.13
2012 2751 1.137513 GATGCGCCCGTTCTATGTAC 58.862 55.000 4.18 0.00 0.00 2.90
2014 2753 2.583164 GCGCCCGTTCTATGTACGC 61.583 63.158 0.00 0.00 37.67 4.42
2015 2754 1.226745 CGCCCGTTCTATGTACGCA 60.227 57.895 0.00 0.00 37.67 5.24
2092 2831 1.511850 TCTGCGACATGTTCCTGTTG 58.488 50.000 0.00 0.00 34.24 3.33
2095 2835 2.020720 TGCGACATGTTCCTGTTGTTT 58.979 42.857 0.00 0.00 33.73 2.83
2110 2850 5.345741 CCTGTTGTTTGAACTGTGTTTCTTG 59.654 40.000 0.00 0.00 0.00 3.02
2120 2860 8.763049 TGAACTGTGTTTCTTGTCTATCTATG 57.237 34.615 0.00 0.00 0.00 2.23
2121 2861 7.331934 TGAACTGTGTTTCTTGTCTATCTATGC 59.668 37.037 0.00 0.00 0.00 3.14
2127 2868 8.454106 GTGTTTCTTGTCTATCTATGCATTGTT 58.546 33.333 3.54 0.00 0.00 2.83
2130 2871 6.653020 TCTTGTCTATCTATGCATTGTTGGT 58.347 36.000 3.54 0.00 0.00 3.67
2136 2877 7.066284 GTCTATCTATGCATTGTTGGTGAAGTT 59.934 37.037 3.54 0.00 0.00 2.66
2138 2879 5.316167 TCTATGCATTGTTGGTGAAGTTCT 58.684 37.500 3.54 0.00 0.00 3.01
2154 2895 4.608948 AGTTCTGTACTTCTGAGGGTTG 57.391 45.455 0.00 0.00 31.29 3.77
2179 2920 3.699411 ATATGGCTGCTTCTCTGATCC 57.301 47.619 0.00 0.00 0.00 3.36
2180 2921 1.210538 ATGGCTGCTTCTCTGATCCA 58.789 50.000 0.00 0.00 0.00 3.41
2182 2923 2.401568 TGGCTGCTTCTCTGATCCATA 58.598 47.619 0.00 0.00 0.00 2.74
2183 2924 2.367894 TGGCTGCTTCTCTGATCCATAG 59.632 50.000 0.00 0.00 0.00 2.23
2199 2940 9.877178 CTGATCCATAGTTCTACTTGTAGTTTT 57.123 33.333 7.56 0.00 0.00 2.43
2219 2960 4.689612 TTACAATAGTCCTGATGGAGCC 57.310 45.455 0.00 0.00 44.16 4.70
2231 2972 3.230976 TGATGGAGCCTTCTTATCGCTA 58.769 45.455 4.34 0.00 31.61 4.26
2261 3002 6.033831 GCAACCATTTTATGTTGATCTCGTTG 59.966 38.462 6.56 0.00 0.00 4.10
2278 3019 3.737266 TCGTTGTGTTTGATCGTAGTTCC 59.263 43.478 0.00 0.00 0.00 3.62
2280 3021 4.376008 CGTTGTGTTTGATCGTAGTTCCTG 60.376 45.833 0.00 0.00 0.00 3.86
2317 3058 5.624159 CCTATTGGTGGAGCATTCTTATCA 58.376 41.667 0.00 0.00 0.00 2.15
2338 3079 2.772077 TGGACAGCAGCCGTTTTATA 57.228 45.000 0.00 0.00 0.00 0.98
2340 3081 3.202906 TGGACAGCAGCCGTTTTATATC 58.797 45.455 0.00 0.00 0.00 1.63
2351 3092 4.919754 GCCGTTTTATATCGACCTCGTTAT 59.080 41.667 0.00 4.25 40.80 1.89
2366 3107 4.496341 CCTCGTTATGGTTGATGTGCATTC 60.496 45.833 0.00 0.00 0.00 2.67
2383 3125 4.020039 TGCATTCCATTTTCTCATTGGCTT 60.020 37.500 0.00 0.00 0.00 4.35
2384 3126 4.569564 GCATTCCATTTTCTCATTGGCTTC 59.430 41.667 0.00 0.00 0.00 3.86
2405 3147 7.383843 GGCTTCCAATTTTAGATTTTGACGAAA 59.616 33.333 0.00 0.00 0.00 3.46
2406 3148 8.760569 GCTTCCAATTTTAGATTTTGACGAAAA 58.239 29.630 0.00 0.00 35.52 2.29
2409 3151 9.810545 TCCAATTTTAGATTTTGACGAAAAGTT 57.189 25.926 0.00 0.00 34.53 2.66
2413 3155 7.458038 TTTAGATTTTGACGAAAAGTTTGGC 57.542 32.000 0.00 0.00 34.53 4.52
2414 3156 4.368315 AGATTTTGACGAAAAGTTTGGCC 58.632 39.130 0.00 0.00 34.53 5.36
2415 3157 3.878160 TTTTGACGAAAAGTTTGGCCT 57.122 38.095 3.32 0.00 0.00 5.19
2416 3158 2.861462 TTGACGAAAAGTTTGGCCTG 57.139 45.000 3.32 0.00 0.00 4.85
2417 3159 0.383949 TGACGAAAAGTTTGGCCTGC 59.616 50.000 3.32 0.00 0.00 4.85
2418 3160 0.668535 GACGAAAAGTTTGGCCTGCT 59.331 50.000 3.32 0.00 0.00 4.24
2419 3161 0.385390 ACGAAAAGTTTGGCCTGCTG 59.615 50.000 3.32 0.00 0.00 4.41
2420 3162 0.940991 CGAAAAGTTTGGCCTGCTGC 60.941 55.000 3.32 0.00 40.16 5.25
2451 3193 4.082125 CTGCCAATTTTAGTCCCTTCTGT 58.918 43.478 0.00 0.00 0.00 3.41
2452 3194 5.249780 TGCCAATTTTAGTCCCTTCTGTA 57.750 39.130 0.00 0.00 0.00 2.74
2516 3550 7.659799 TGTCGAAGATTTGGACTGAGAATTAAA 59.340 33.333 5.73 0.00 40.67 1.52
2517 3551 8.669243 GTCGAAGATTTGGACTGAGAATTAAAT 58.331 33.333 0.00 0.00 40.67 1.40
2518 3552 8.883731 TCGAAGATTTGGACTGAGAATTAAATC 58.116 33.333 0.00 0.00 35.73 2.17
2519 3553 8.887717 CGAAGATTTGGACTGAGAATTAAATCT 58.112 33.333 0.00 0.00 43.05 2.40
2521 3555 7.994194 AGATTTGGACTGAGAATTAAATCTGC 58.006 34.615 0.00 0.00 41.00 4.26
2522 3556 7.613022 AGATTTGGACTGAGAATTAAATCTGCA 59.387 33.333 0.00 0.00 41.00 4.41
2523 3557 7.523293 TTTGGACTGAGAATTAAATCTGCAA 57.477 32.000 0.00 0.00 0.00 4.08
2524 3558 7.523293 TTGGACTGAGAATTAAATCTGCAAA 57.477 32.000 0.00 0.00 0.00 3.68
2525 3559 7.523293 TGGACTGAGAATTAAATCTGCAAAA 57.477 32.000 0.00 0.00 0.00 2.44
2526 3560 7.950512 TGGACTGAGAATTAAATCTGCAAAAA 58.049 30.769 0.00 0.00 0.00 1.94
2527 3561 8.587608 TGGACTGAGAATTAAATCTGCAAAAAT 58.412 29.630 0.00 0.00 0.00 1.82
2528 3562 9.080915 GGACTGAGAATTAAATCTGCAAAAATC 57.919 33.333 0.00 0.00 0.00 2.17
2529 3563 8.679288 ACTGAGAATTAAATCTGCAAAAATCG 57.321 30.769 0.00 0.00 0.00 3.34
2530 3564 8.299570 ACTGAGAATTAAATCTGCAAAAATCGT 58.700 29.630 0.00 0.00 0.00 3.73
2531 3565 9.773328 CTGAGAATTAAATCTGCAAAAATCGTA 57.227 29.630 0.00 0.00 0.00 3.43
2541 3575 3.190327 TGCAAAAATCGTATGGTCTGGTG 59.810 43.478 0.00 0.00 0.00 4.17
2546 3580 6.834168 AAAATCGTATGGTCTGGTGATTTT 57.166 33.333 5.23 5.23 39.73 1.82
2547 3581 7.931578 AAAATCGTATGGTCTGGTGATTTTA 57.068 32.000 8.49 0.00 41.56 1.52
2548 3582 7.931578 AAATCGTATGGTCTGGTGATTTTAA 57.068 32.000 0.00 0.00 33.57 1.52
2598 3633 6.639632 TGGTATTGGTAGTATCGTAAGGAC 57.360 41.667 0.00 0.00 38.47 3.85
2615 3650 2.269241 CCAGGAAGGAACTCGGGC 59.731 66.667 0.00 0.00 38.49 6.13
2640 3675 1.536766 CTTCAGAATTTGTGCCGCTCA 59.463 47.619 0.00 0.00 0.00 4.26
2641 3676 1.825090 TCAGAATTTGTGCCGCTCAT 58.175 45.000 0.00 0.00 0.00 2.90
2656 3691 3.536158 GCTCATGTGCGAACAAAACTA 57.464 42.857 0.00 0.00 0.00 2.24
2657 3692 3.226347 GCTCATGTGCGAACAAAACTAC 58.774 45.455 0.00 0.00 0.00 2.73
2659 3694 4.457810 CTCATGTGCGAACAAAACTACAG 58.542 43.478 0.00 0.00 0.00 2.74
2660 3695 3.874543 TCATGTGCGAACAAAACTACAGT 59.125 39.130 0.00 0.00 0.00 3.55
2661 3696 5.051153 TCATGTGCGAACAAAACTACAGTA 58.949 37.500 0.00 0.00 0.00 2.74
2662 3697 5.524281 TCATGTGCGAACAAAACTACAGTAA 59.476 36.000 0.00 0.00 0.00 2.24
2663 3698 5.798015 TGTGCGAACAAAACTACAGTAAA 57.202 34.783 0.00 0.00 0.00 2.01
2664 3699 6.179504 TGTGCGAACAAAACTACAGTAAAA 57.820 33.333 0.00 0.00 0.00 1.52
2665 3700 6.252281 TGTGCGAACAAAACTACAGTAAAAG 58.748 36.000 0.00 0.00 0.00 2.27
2666 3701 5.679792 GTGCGAACAAAACTACAGTAAAAGG 59.320 40.000 0.00 0.00 0.00 3.11
2667 3702 4.673761 GCGAACAAAACTACAGTAAAAGGC 59.326 41.667 0.00 0.00 0.00 4.35
2668 3703 5.505159 GCGAACAAAACTACAGTAAAAGGCT 60.505 40.000 0.00 0.00 0.00 4.58
2686 3721 2.498078 GGCTAGTGCTTAGACTTGGTCT 59.502 50.000 5.52 5.52 41.63 3.85
2708 3743 2.805353 CGTTGACGTCGAGCCCTG 60.805 66.667 11.62 0.00 34.11 4.45
2717 3752 1.359848 GTCGAGCCCTGTACACAATG 58.640 55.000 0.00 0.00 0.00 2.82
2740 3775 1.071071 ACATCGAACCCACCGAAGAAA 59.929 47.619 0.00 0.00 39.62 2.52
2750 3785 2.032924 CCACCGAAGAAACAACTTGGAC 59.967 50.000 0.00 0.00 0.00 4.02
2751 3786 2.032924 CACCGAAGAAACAACTTGGACC 59.967 50.000 0.00 0.00 0.00 4.46
2759 3794 1.166531 ACAACTTGGACCGAGCAAGC 61.167 55.000 8.84 0.00 0.00 4.01
2760 3795 1.600916 AACTTGGACCGAGCAAGCC 60.601 57.895 8.84 0.00 0.00 4.35
2761 3796 2.032528 CTTGGACCGAGCAAGCCA 59.967 61.111 0.00 0.00 0.00 4.75
2762 3797 2.281484 TTGGACCGAGCAAGCCAC 60.281 61.111 0.00 0.00 0.00 5.01
2763 3798 3.113514 TTGGACCGAGCAAGCCACA 62.114 57.895 0.00 0.00 0.00 4.17
2764 3799 2.045926 GGACCGAGCAAGCCACAT 60.046 61.111 0.00 0.00 0.00 3.21
2765 3800 1.675641 GGACCGAGCAAGCCACATT 60.676 57.895 0.00 0.00 0.00 2.71
2766 3801 1.503542 GACCGAGCAAGCCACATTG 59.496 57.895 0.00 0.00 0.00 2.82
2767 3802 1.228245 ACCGAGCAAGCCACATTGT 60.228 52.632 0.00 0.00 32.56 2.71
2768 3803 0.823356 ACCGAGCAAGCCACATTGTT 60.823 50.000 0.00 0.00 32.56 2.83
2769 3804 0.314935 CCGAGCAAGCCACATTGTTT 59.685 50.000 0.00 0.00 32.56 2.83
2770 3805 1.411394 CGAGCAAGCCACATTGTTTG 58.589 50.000 0.00 0.00 32.56 2.93
2771 3806 1.142474 GAGCAAGCCACATTGTTTGC 58.858 50.000 14.12 14.12 44.63 3.68
2772 3807 0.464870 AGCAAGCCACATTGTTTGCA 59.535 45.000 20.82 0.00 46.20 4.08
2773 3808 0.863144 GCAAGCCACATTGTTTGCAG 59.137 50.000 16.16 7.58 43.93 4.41
2774 3809 0.863144 CAAGCCACATTGTTTGCAGC 59.137 50.000 9.91 0.00 0.00 5.25
2775 3810 0.464870 AAGCCACATTGTTTGCAGCA 59.535 45.000 9.91 0.00 0.00 4.41
2776 3811 0.032952 AGCCACATTGTTTGCAGCAG 59.967 50.000 9.91 0.00 0.00 4.24
2777 3812 1.562575 GCCACATTGTTTGCAGCAGC 61.563 55.000 0.00 0.00 42.57 5.25
2778 3813 0.032952 CCACATTGTTTGCAGCAGCT 59.967 50.000 1.76 0.00 42.74 4.24
2779 3814 1.539496 CCACATTGTTTGCAGCAGCTT 60.539 47.619 1.76 0.00 42.74 3.74
2780 3815 1.525197 CACATTGTTTGCAGCAGCTTG 59.475 47.619 1.76 0.00 42.74 4.01
2781 3816 0.511221 CATTGTTTGCAGCAGCTTGC 59.489 50.000 1.76 3.32 45.46 4.01
2793 3828 2.987547 GCTTGCAGCTCCAGCCAA 60.988 61.111 0.00 0.00 43.38 4.52
2794 3829 2.991076 GCTTGCAGCTCCAGCCAAG 61.991 63.158 11.27 11.27 43.38 3.61
2795 3830 2.282674 TTGCAGCTCCAGCCAAGG 60.283 61.111 0.00 0.00 43.38 3.61
2798 3833 3.060615 CAGCTCCAGCCAAGGCAC 61.061 66.667 14.40 0.00 44.88 5.01
2799 3834 3.573229 AGCTCCAGCCAAGGCACA 61.573 61.111 14.40 0.00 44.88 4.57
2800 3835 2.598394 GCTCCAGCCAAGGCACAA 60.598 61.111 14.40 0.00 44.88 3.33
2801 3836 1.980772 GCTCCAGCCAAGGCACAAT 60.981 57.895 14.40 0.00 44.88 2.71
2802 3837 1.888018 CTCCAGCCAAGGCACAATG 59.112 57.895 14.40 2.42 44.88 2.82
2803 3838 2.221906 CTCCAGCCAAGGCACAATGC 62.222 60.000 14.40 0.00 44.88 3.56
2814 3849 2.907910 GCACAATGCACAACTCTAGG 57.092 50.000 0.00 0.00 44.26 3.02
2815 3850 1.470098 GCACAATGCACAACTCTAGGG 59.530 52.381 0.00 0.00 44.26 3.53
2816 3851 2.875672 GCACAATGCACAACTCTAGGGA 60.876 50.000 0.00 0.00 44.26 4.20
2817 3852 3.005554 CACAATGCACAACTCTAGGGAG 58.994 50.000 0.00 0.00 44.62 4.30
2818 3853 2.906389 ACAATGCACAACTCTAGGGAGA 59.094 45.455 0.00 0.00 41.86 3.71
2827 3862 3.616284 TCTAGGGAGAGATCGCTCG 57.384 57.895 18.64 6.57 45.98 5.03
2828 3863 0.604243 TCTAGGGAGAGATCGCTCGC 60.604 60.000 28.47 28.47 45.98 5.03
2832 3867 2.051703 GAGAGATCGCTCGCCGTC 60.052 66.667 10.86 0.00 45.98 4.79
2833 3868 2.824489 AGAGATCGCTCGCCGTCA 60.824 61.111 0.00 0.00 45.98 4.35
2834 3869 2.652496 GAGATCGCTCGCCGTCAC 60.652 66.667 0.00 0.00 38.35 3.67
2835 3870 3.114647 GAGATCGCTCGCCGTCACT 62.115 63.158 0.00 0.00 38.35 3.41
2836 3871 2.951745 GATCGCTCGCCGTCACTG 60.952 66.667 0.00 0.00 38.35 3.66
2837 3872 4.498520 ATCGCTCGCCGTCACTGG 62.499 66.667 0.00 0.00 38.35 4.00
2840 3875 4.664677 GCTCGCCGTCACTGGTGT 62.665 66.667 0.53 0.00 40.48 4.16
2841 3876 2.959372 CTCGCCGTCACTGGTGTA 59.041 61.111 0.53 0.00 40.48 2.90
2842 3877 1.511305 CTCGCCGTCACTGGTGTAT 59.489 57.895 0.53 0.00 40.48 2.29
2843 3878 0.108804 CTCGCCGTCACTGGTGTATT 60.109 55.000 0.53 0.00 40.48 1.89
2844 3879 0.389296 TCGCCGTCACTGGTGTATTG 60.389 55.000 0.53 0.00 40.48 1.90
2845 3880 0.669318 CGCCGTCACTGGTGTATTGT 60.669 55.000 0.53 0.00 34.75 2.71
2846 3881 1.076332 GCCGTCACTGGTGTATTGTC 58.924 55.000 0.53 0.00 0.00 3.18
2847 3882 1.337823 GCCGTCACTGGTGTATTGTCT 60.338 52.381 0.53 0.00 0.00 3.41
2848 3883 2.607187 CCGTCACTGGTGTATTGTCTC 58.393 52.381 0.53 0.00 0.00 3.36
2849 3884 2.231478 CCGTCACTGGTGTATTGTCTCT 59.769 50.000 0.53 0.00 0.00 3.10
2850 3885 3.245797 CGTCACTGGTGTATTGTCTCTG 58.754 50.000 0.53 0.00 0.00 3.35
2851 3886 3.305403 CGTCACTGGTGTATTGTCTCTGT 60.305 47.826 0.53 0.00 0.00 3.41
2852 3887 4.632153 GTCACTGGTGTATTGTCTCTGTT 58.368 43.478 0.53 0.00 0.00 3.16
2853 3888 5.057149 GTCACTGGTGTATTGTCTCTGTTT 58.943 41.667 0.53 0.00 0.00 2.83
2854 3889 5.527582 GTCACTGGTGTATTGTCTCTGTTTT 59.472 40.000 0.53 0.00 0.00 2.43
2855 3890 5.527214 TCACTGGTGTATTGTCTCTGTTTTG 59.473 40.000 0.53 0.00 0.00 2.44
2856 3891 4.275936 ACTGGTGTATTGTCTCTGTTTTGC 59.724 41.667 0.00 0.00 0.00 3.68
2857 3892 3.568007 TGGTGTATTGTCTCTGTTTTGCC 59.432 43.478 0.00 0.00 0.00 4.52
2858 3893 3.821033 GGTGTATTGTCTCTGTTTTGCCT 59.179 43.478 0.00 0.00 0.00 4.75
2859 3894 4.278419 GGTGTATTGTCTCTGTTTTGCCTT 59.722 41.667 0.00 0.00 0.00 4.35
2860 3895 5.452777 GTGTATTGTCTCTGTTTTGCCTTC 58.547 41.667 0.00 0.00 0.00 3.46
2861 3896 5.239525 GTGTATTGTCTCTGTTTTGCCTTCT 59.760 40.000 0.00 0.00 0.00 2.85
2862 3897 5.827797 TGTATTGTCTCTGTTTTGCCTTCTT 59.172 36.000 0.00 0.00 0.00 2.52
2863 3898 5.859205 ATTGTCTCTGTTTTGCCTTCTTT 57.141 34.783 0.00 0.00 0.00 2.52
2864 3899 6.959639 ATTGTCTCTGTTTTGCCTTCTTTA 57.040 33.333 0.00 0.00 0.00 1.85
2865 3900 6.767524 TTGTCTCTGTTTTGCCTTCTTTAA 57.232 33.333 0.00 0.00 0.00 1.52
2866 3901 6.377327 TGTCTCTGTTTTGCCTTCTTTAAG 57.623 37.500 0.00 0.00 0.00 1.85
2867 3902 5.215903 GTCTCTGTTTTGCCTTCTTTAAGC 58.784 41.667 0.00 0.00 0.00 3.09
2868 3903 5.009110 GTCTCTGTTTTGCCTTCTTTAAGCT 59.991 40.000 0.00 0.00 0.00 3.74
2869 3904 5.594317 TCTCTGTTTTGCCTTCTTTAAGCTT 59.406 36.000 3.48 3.48 0.00 3.74
2870 3905 6.096846 TCTCTGTTTTGCCTTCTTTAAGCTTT 59.903 34.615 3.20 0.00 0.00 3.51
2871 3906 7.284489 TCTCTGTTTTGCCTTCTTTAAGCTTTA 59.716 33.333 3.20 0.00 0.00 1.85
2872 3907 7.951591 TCTGTTTTGCCTTCTTTAAGCTTTAT 58.048 30.769 3.20 0.00 0.00 1.40
2873 3908 8.421002 TCTGTTTTGCCTTCTTTAAGCTTTATT 58.579 29.630 3.20 0.00 0.00 1.40
2874 3909 8.364129 TGTTTTGCCTTCTTTAAGCTTTATTG 57.636 30.769 3.20 0.00 0.00 1.90
2875 3910 7.440856 TGTTTTGCCTTCTTTAAGCTTTATTGG 59.559 33.333 3.20 1.44 0.00 3.16
2876 3911 5.072040 TGCCTTCTTTAAGCTTTATTGGC 57.928 39.130 3.20 12.01 37.38 4.52
2877 3912 4.772100 TGCCTTCTTTAAGCTTTATTGGCT 59.228 37.500 20.31 0.00 42.31 4.75
2878 3913 5.105756 TGCCTTCTTTAAGCTTTATTGGCTC 60.106 40.000 20.31 3.61 39.30 4.70
2879 3914 5.126222 GCCTTCTTTAAGCTTTATTGGCTCT 59.874 40.000 3.20 0.00 39.30 4.09
2880 3915 6.558909 CCTTCTTTAAGCTTTATTGGCTCTG 58.441 40.000 3.20 0.00 39.30 3.35
2881 3916 6.151817 CCTTCTTTAAGCTTTATTGGCTCTGT 59.848 38.462 3.20 0.00 39.30 3.41
2882 3917 7.309438 CCTTCTTTAAGCTTTATTGGCTCTGTT 60.309 37.037 3.20 0.00 39.30 3.16
2883 3918 7.524717 TCTTTAAGCTTTATTGGCTCTGTTT 57.475 32.000 3.20 0.00 39.30 2.83
2884 3919 7.951591 TCTTTAAGCTTTATTGGCTCTGTTTT 58.048 30.769 3.20 0.00 39.30 2.43
2885 3920 7.867403 TCTTTAAGCTTTATTGGCTCTGTTTTG 59.133 33.333 3.20 0.00 39.30 2.44
2886 3921 5.535753 AAGCTTTATTGGCTCTGTTTTGT 57.464 34.783 0.00 0.00 39.30 2.83
2887 3922 5.126396 AGCTTTATTGGCTCTGTTTTGTC 57.874 39.130 0.00 0.00 34.70 3.18
2888 3923 3.914364 GCTTTATTGGCTCTGTTTTGTCG 59.086 43.478 0.00 0.00 0.00 4.35
2889 3924 4.556699 GCTTTATTGGCTCTGTTTTGTCGT 60.557 41.667 0.00 0.00 0.00 4.34
2890 3925 5.508200 TTTATTGGCTCTGTTTTGTCGTT 57.492 34.783 0.00 0.00 0.00 3.85
2891 3926 2.842208 TTGGCTCTGTTTTGTCGTTG 57.158 45.000 0.00 0.00 0.00 4.10
2892 3927 2.031258 TGGCTCTGTTTTGTCGTTGA 57.969 45.000 0.00 0.00 0.00 3.18
2893 3928 2.571212 TGGCTCTGTTTTGTCGTTGAT 58.429 42.857 0.00 0.00 0.00 2.57
2894 3929 2.290367 TGGCTCTGTTTTGTCGTTGATG 59.710 45.455 0.00 0.00 0.00 3.07
2895 3930 2.290641 GGCTCTGTTTTGTCGTTGATGT 59.709 45.455 0.00 0.00 0.00 3.06
2896 3931 3.545633 GCTCTGTTTTGTCGTTGATGTC 58.454 45.455 0.00 0.00 0.00 3.06
2897 3932 3.607078 GCTCTGTTTTGTCGTTGATGTCC 60.607 47.826 0.00 0.00 0.00 4.02
2898 3933 2.542178 TCTGTTTTGTCGTTGATGTCCG 59.458 45.455 0.00 0.00 0.00 4.79
2899 3934 2.281517 TGTTTTGTCGTTGATGTCCGT 58.718 42.857 0.00 0.00 0.00 4.69
2900 3935 2.678836 TGTTTTGTCGTTGATGTCCGTT 59.321 40.909 0.00 0.00 0.00 4.44
2901 3936 3.127203 TGTTTTGTCGTTGATGTCCGTTT 59.873 39.130 0.00 0.00 0.00 3.60
2902 3937 4.099824 GTTTTGTCGTTGATGTCCGTTTT 58.900 39.130 0.00 0.00 0.00 2.43
2903 3938 4.358494 TTTGTCGTTGATGTCCGTTTTT 57.642 36.364 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.552031 GGAAGCGGAACTGATACCTTC 58.448 52.381 0.00 0.00 0.00 3.46
110 111 1.459450 CAACCACCTTATGAACCGGG 58.541 55.000 6.32 0.00 0.00 5.73
212 213 1.663695 ACCATAAATCAGAACGGCGG 58.336 50.000 13.24 0.00 0.00 6.13
215 216 6.972328 CCAAACATAACCATAAATCAGAACGG 59.028 38.462 0.00 0.00 0.00 4.44
232 377 8.698973 TTTGTAATCTCAAGGAACCAAACATA 57.301 30.769 0.00 0.00 0.00 2.29
316 461 6.304624 TGGAGTACCATCACTAGAATCGTAT 58.695 40.000 0.00 0.00 41.77 3.06
445 593 8.907222 AAACTCTACTCCACGGTTTATAAAAA 57.093 30.769 0.00 0.00 0.00 1.94
482 631 9.830294 CAATCACATCAAACGCACAATATATAT 57.170 29.630 0.00 0.00 0.00 0.86
483 632 8.288913 CCAATCACATCAAACGCACAATATATA 58.711 33.333 0.00 0.00 0.00 0.86
602 753 7.998580 TGCACAATGATAAATGCTAGATTGAA 58.001 30.769 0.00 0.00 38.90 2.69
630 781 7.944554 TGAGATCCCTCAACTAAAAACTTCATT 59.055 33.333 0.00 0.00 45.74 2.57
654 805 3.544684 ACTGCAACATCAACAGACTTGA 58.455 40.909 0.00 0.00 35.38 3.02
687 838 5.186198 AGCTGGATTTATCAACACCTGTAC 58.814 41.667 0.00 0.00 0.00 2.90
871 1023 3.255725 TGTACCGCATAGCAAGTTGTAC 58.744 45.455 4.48 0.00 0.00 2.90
1161 1335 4.771577 TGGATGTTGTAATCAGCCAATGTT 59.228 37.500 0.36 0.00 46.20 2.71
1293 1774 4.574892 TCTTTGCCTTGACATTGTCGATA 58.425 39.130 11.97 0.00 34.95 2.92
1665 2378 3.066190 CCACCACGTAGGCGGAGA 61.066 66.667 5.46 0.00 42.62 3.71
1722 2435 2.729194 GAGCTCTCCACCTCAAGAGTA 58.271 52.381 6.43 0.00 40.93 2.59
1767 2480 1.918957 CCCTCCTTGTCCTGGATCTTT 59.081 52.381 0.00 0.00 32.56 2.52
2001 2740 2.244251 TCGTGTTGCGTACATAGAACG 58.756 47.619 0.00 0.00 43.12 3.95
2012 2751 6.474364 TGAAATATTGTAGAATCGTGTTGCG 58.526 36.000 0.00 0.00 43.01 4.85
2014 2753 8.873830 ACTCTGAAATATTGTAGAATCGTGTTG 58.126 33.333 0.00 0.00 0.00 3.33
2092 2831 7.920738 AGATAGACAAGAAACACAGTTCAAAC 58.079 34.615 0.00 0.00 0.00 2.93
2095 2835 7.331934 GCATAGATAGACAAGAAACACAGTTCA 59.668 37.037 0.00 0.00 0.00 3.18
2110 2850 6.540189 ACTTCACCAACAATGCATAGATAGAC 59.460 38.462 0.00 0.00 0.00 2.59
2120 2860 3.715628 ACAGAACTTCACCAACAATGC 57.284 42.857 0.00 0.00 0.00 3.56
2121 2861 6.377327 AAGTACAGAACTTCACCAACAATG 57.623 37.500 0.00 0.00 45.64 2.82
2136 2877 2.257207 CCCAACCCTCAGAAGTACAGA 58.743 52.381 0.00 0.00 0.00 3.41
2138 2879 0.690762 GCCCAACCCTCAGAAGTACA 59.309 55.000 0.00 0.00 0.00 2.90
2154 2895 0.957362 GAGAAGCAGCCATATTGCCC 59.043 55.000 0.00 0.00 42.48 5.36
2199 2940 3.928754 AGGCTCCATCAGGACTATTGTA 58.071 45.455 0.00 0.00 39.61 2.41
2202 2943 3.663198 AGAAGGCTCCATCAGGACTATT 58.337 45.455 0.00 0.00 39.61 1.73
2209 2950 2.036992 AGCGATAAGAAGGCTCCATCAG 59.963 50.000 0.00 0.00 29.31 2.90
2212 2953 3.501349 TCTAGCGATAAGAAGGCTCCAT 58.499 45.455 0.00 0.00 38.19 3.41
2213 2954 2.945456 TCTAGCGATAAGAAGGCTCCA 58.055 47.619 0.00 0.00 38.19 3.86
2231 2972 7.899973 AGATCAACATAAAATGGTTGCTTTCT 58.100 30.769 0.00 0.00 43.06 2.52
2238 2979 7.083858 CACAACGAGATCAACATAAAATGGTT 58.916 34.615 0.00 0.00 33.60 3.67
2239 2980 6.206634 ACACAACGAGATCAACATAAAATGGT 59.793 34.615 0.00 0.00 33.60 3.55
2261 3002 5.467705 ACTACAGGAACTACGATCAAACAC 58.532 41.667 0.00 0.00 36.02 3.32
2278 3019 7.604164 CCACCAATAGGCTATCATAAACTACAG 59.396 40.741 7.63 0.00 39.06 2.74
2280 3021 7.676947 TCCACCAATAGGCTATCATAAACTAC 58.323 38.462 7.63 0.00 39.06 2.73
2317 3058 1.904287 TAAAACGGCTGCTGTCCAAT 58.096 45.000 15.51 4.30 0.00 3.16
2338 3079 3.132289 ACATCAACCATAACGAGGTCGAT 59.868 43.478 6.35 0.00 43.02 3.59
2340 3081 2.603110 CACATCAACCATAACGAGGTCG 59.397 50.000 0.00 0.00 46.33 4.79
2351 3092 4.283978 AGAAAATGGAATGCACATCAACCA 59.716 37.500 0.00 0.00 38.71 3.67
2366 3107 4.540359 TTGGAAGCCAATGAGAAAATGG 57.460 40.909 0.00 0.00 38.75 3.16
2383 3125 9.810545 AACTTTTCGTCAAAATCTAAAATTGGA 57.189 25.926 0.00 0.00 30.91 3.53
2398 3140 0.383949 GCAGGCCAAACTTTTCGTCA 59.616 50.000 5.01 0.00 0.00 4.35
2399 3141 0.668535 AGCAGGCCAAACTTTTCGTC 59.331 50.000 5.01 0.00 0.00 4.20
2433 3175 5.888161 AGCCATACAGAAGGGACTAAAATTG 59.112 40.000 0.00 0.00 38.49 2.32
2434 3176 6.079712 AGCCATACAGAAGGGACTAAAATT 57.920 37.500 0.00 0.00 38.49 1.82
2451 3193 8.703743 ACCTATGCAAAATAATCAAAAGCCATA 58.296 29.630 0.00 0.00 0.00 2.74
2452 3194 7.567458 ACCTATGCAAAATAATCAAAAGCCAT 58.433 30.769 0.00 0.00 0.00 4.40
2516 3550 4.336433 CCAGACCATACGATTTTTGCAGAT 59.664 41.667 0.00 0.00 0.00 2.90
2517 3551 3.689161 CCAGACCATACGATTTTTGCAGA 59.311 43.478 0.00 0.00 0.00 4.26
2518 3552 3.440173 ACCAGACCATACGATTTTTGCAG 59.560 43.478 0.00 0.00 0.00 4.41
2519 3553 3.190327 CACCAGACCATACGATTTTTGCA 59.810 43.478 0.00 0.00 0.00 4.08
2520 3554 3.438781 TCACCAGACCATACGATTTTTGC 59.561 43.478 0.00 0.00 0.00 3.68
2521 3555 5.818136 ATCACCAGACCATACGATTTTTG 57.182 39.130 0.00 0.00 0.00 2.44
2522 3556 6.834168 AAATCACCAGACCATACGATTTTT 57.166 33.333 0.00 0.00 30.93 1.94
2523 3557 6.834168 AAAATCACCAGACCATACGATTTT 57.166 33.333 0.00 0.00 37.92 1.82
2524 3558 7.931578 TTAAAATCACCAGACCATACGATTT 57.068 32.000 0.00 0.00 35.25 2.17
2525 3559 7.610305 ACTTTAAAATCACCAGACCATACGATT 59.390 33.333 0.00 0.00 0.00 3.34
2526 3560 7.110155 ACTTTAAAATCACCAGACCATACGAT 58.890 34.615 0.00 0.00 0.00 3.73
2527 3561 6.469410 ACTTTAAAATCACCAGACCATACGA 58.531 36.000 0.00 0.00 0.00 3.43
2528 3562 6.737254 ACTTTAAAATCACCAGACCATACG 57.263 37.500 0.00 0.00 0.00 3.06
2547 3581 9.899226 GATTCTGTTTGTCAGCTATTTTACTTT 57.101 29.630 0.00 0.00 43.32 2.66
2548 3582 9.289782 AGATTCTGTTTGTCAGCTATTTTACTT 57.710 29.630 0.00 0.00 43.32 2.24
2557 3591 3.825328 ACCAAGATTCTGTTTGTCAGCT 58.175 40.909 0.00 0.00 43.32 4.24
2560 3594 6.068010 ACCAATACCAAGATTCTGTTTGTCA 58.932 36.000 0.00 0.00 0.00 3.58
2563 3597 7.687941 ACTACCAATACCAAGATTCTGTTTG 57.312 36.000 0.00 0.00 0.00 2.93
2564 3598 9.614792 GATACTACCAATACCAAGATTCTGTTT 57.385 33.333 0.00 0.00 0.00 2.83
2598 3633 1.842381 AAGCCCGAGTTCCTTCCTGG 61.842 60.000 0.00 0.00 37.10 4.45
2615 3650 2.095059 CGGCACAAATTCTGAAGGGAAG 60.095 50.000 0.00 0.00 0.00 3.46
2640 3675 5.994887 TTACTGTAGTTTTGTTCGCACAT 57.005 34.783 0.00 0.00 31.06 3.21
2641 3676 5.798015 TTTACTGTAGTTTTGTTCGCACA 57.202 34.783 0.00 0.00 0.00 4.57
2656 3691 5.246429 AGTCTAAGCACTAGCCTTTTACTGT 59.754 40.000 2.04 0.00 43.56 3.55
2657 3692 5.725362 AGTCTAAGCACTAGCCTTTTACTG 58.275 41.667 2.04 0.00 43.56 2.74
2659 3694 5.351740 CCAAGTCTAAGCACTAGCCTTTTAC 59.648 44.000 2.04 2.31 43.56 2.01
2660 3695 5.012768 ACCAAGTCTAAGCACTAGCCTTTTA 59.987 40.000 2.04 0.00 43.56 1.52
2661 3696 4.202472 ACCAAGTCTAAGCACTAGCCTTTT 60.202 41.667 2.04 0.00 43.56 2.27
2662 3697 3.328050 ACCAAGTCTAAGCACTAGCCTTT 59.672 43.478 2.04 0.00 43.56 3.11
2663 3698 2.907042 ACCAAGTCTAAGCACTAGCCTT 59.093 45.455 0.00 0.00 43.56 4.35
2664 3699 2.498078 GACCAAGTCTAAGCACTAGCCT 59.502 50.000 0.00 0.00 43.56 4.58
2665 3700 2.498078 AGACCAAGTCTAAGCACTAGCC 59.502 50.000 0.00 0.00 41.51 3.93
2666 3701 3.878160 AGACCAAGTCTAAGCACTAGC 57.122 47.619 0.00 0.00 41.51 3.42
2708 3743 3.124636 GGGTTCGATGTCACATTGTGTAC 59.875 47.826 16.06 12.86 34.79 2.90
2717 3752 0.320073 TTCGGTGGGTTCGATGTCAC 60.320 55.000 0.00 0.00 36.49 3.67
2740 3775 1.166531 GCTTGCTCGGTCCAAGTTGT 61.167 55.000 1.45 0.00 41.27 3.32
2750 3785 0.314935 AAACAATGTGGCTTGCTCGG 59.685 50.000 0.00 0.00 0.00 4.63
2751 3786 1.411394 CAAACAATGTGGCTTGCTCG 58.589 50.000 0.00 0.00 0.00 5.03
2759 3794 0.032952 AGCTGCTGCAAACAATGTGG 59.967 50.000 18.42 0.00 42.74 4.17
2760 3795 1.525197 CAAGCTGCTGCAAACAATGTG 59.475 47.619 18.42 0.00 42.74 3.21
2761 3796 1.860676 CAAGCTGCTGCAAACAATGT 58.139 45.000 18.42 0.00 42.74 2.71
2762 3797 0.511221 GCAAGCTGCTGCAAACAATG 59.489 50.000 18.42 7.55 42.17 2.82
2763 3798 2.908817 GCAAGCTGCTGCAAACAAT 58.091 47.368 18.42 0.00 42.17 2.71
2764 3799 4.423764 GCAAGCTGCTGCAAACAA 57.576 50.000 18.42 0.00 42.17 2.83
2777 3812 2.341101 CCTTGGCTGGAGCTGCAAG 61.341 63.158 9.92 3.32 38.88 4.01
2778 3813 2.282674 CCTTGGCTGGAGCTGCAA 60.283 61.111 9.92 0.00 41.70 4.08
2781 3816 3.060615 GTGCCTTGGCTGGAGCTG 61.061 66.667 13.18 0.00 41.70 4.24
2782 3817 2.436596 ATTGTGCCTTGGCTGGAGCT 62.437 55.000 13.18 0.00 41.70 4.09
2783 3818 1.980772 ATTGTGCCTTGGCTGGAGC 60.981 57.895 13.18 0.00 41.14 4.70
2784 3819 1.888018 CATTGTGCCTTGGCTGGAG 59.112 57.895 13.18 0.00 0.00 3.86
2785 3820 2.277591 GCATTGTGCCTTGGCTGGA 61.278 57.895 13.18 0.00 37.42 3.86
2786 3821 2.263540 GCATTGTGCCTTGGCTGG 59.736 61.111 13.18 0.00 37.42 4.85
2787 3822 1.373748 GTGCATTGTGCCTTGGCTG 60.374 57.895 13.18 3.88 44.23 4.85
2788 3823 1.401318 TTGTGCATTGTGCCTTGGCT 61.401 50.000 13.18 0.00 44.23 4.75
2789 3824 1.069427 TTGTGCATTGTGCCTTGGC 59.931 52.632 4.43 4.43 44.23 4.52
2790 3825 0.390124 AGTTGTGCATTGTGCCTTGG 59.610 50.000 0.00 0.00 44.23 3.61
2791 3826 1.338973 AGAGTTGTGCATTGTGCCTTG 59.661 47.619 0.00 0.00 44.23 3.61
2792 3827 1.696063 AGAGTTGTGCATTGTGCCTT 58.304 45.000 0.00 0.00 44.23 4.35
2793 3828 2.430465 CTAGAGTTGTGCATTGTGCCT 58.570 47.619 0.00 0.00 44.23 4.75
2794 3829 1.470098 CCTAGAGTTGTGCATTGTGCC 59.530 52.381 0.00 0.00 44.23 5.01
2795 3830 1.470098 CCCTAGAGTTGTGCATTGTGC 59.530 52.381 0.00 0.00 45.29 4.57
2796 3831 3.005554 CTCCCTAGAGTTGTGCATTGTG 58.994 50.000 0.00 0.00 35.21 3.33
2797 3832 2.906389 TCTCCCTAGAGTTGTGCATTGT 59.094 45.455 0.00 0.00 41.26 2.71
2798 3833 3.529533 CTCTCCCTAGAGTTGTGCATTG 58.470 50.000 0.00 0.00 43.75 2.82
2799 3834 3.902881 CTCTCCCTAGAGTTGTGCATT 57.097 47.619 0.00 0.00 43.75 3.56
2809 3844 0.604243 GCGAGCGATCTCTCCCTAGA 60.604 60.000 7.12 0.00 37.19 2.43
2810 3845 1.582610 GGCGAGCGATCTCTCCCTAG 61.583 65.000 7.12 0.00 38.07 3.02
2811 3846 1.601197 GGCGAGCGATCTCTCCCTA 60.601 63.158 7.12 0.00 38.07 3.53
2812 3847 2.909965 GGCGAGCGATCTCTCCCT 60.910 66.667 7.12 0.00 38.07 4.20
2813 3848 4.335584 CGGCGAGCGATCTCTCCC 62.336 72.222 0.00 8.29 40.31 4.30
2814 3849 3.530398 GACGGCGAGCGATCTCTCC 62.530 68.421 16.62 0.60 40.09 3.71
2815 3850 2.051703 GACGGCGAGCGATCTCTC 60.052 66.667 16.62 2.43 37.19 3.20
2816 3851 2.824489 TGACGGCGAGCGATCTCT 60.824 61.111 16.62 0.00 37.19 3.10
2817 3852 2.652496 GTGACGGCGAGCGATCTC 60.652 66.667 16.62 0.00 35.99 2.75
2818 3853 3.134792 AGTGACGGCGAGCGATCT 61.135 61.111 16.62 0.00 0.00 2.75
2819 3854 2.951745 CAGTGACGGCGAGCGATC 60.952 66.667 16.62 0.00 0.00 3.69
2820 3855 4.498520 CCAGTGACGGCGAGCGAT 62.499 66.667 16.62 0.00 0.00 4.58
2823 3858 2.558554 ATACACCAGTGACGGCGAGC 62.559 60.000 16.62 5.63 0.00 5.03
2824 3859 0.108804 AATACACCAGTGACGGCGAG 60.109 55.000 16.62 0.00 0.00 5.03
2825 3860 0.389296 CAATACACCAGTGACGGCGA 60.389 55.000 16.62 0.00 0.00 5.54
2826 3861 0.669318 ACAATACACCAGTGACGGCG 60.669 55.000 4.80 4.80 0.00 6.46
2827 3862 1.076332 GACAATACACCAGTGACGGC 58.924 55.000 4.48 0.00 0.00 5.68
2828 3863 2.231478 AGAGACAATACACCAGTGACGG 59.769 50.000 4.48 0.00 0.00 4.79
2829 3864 3.245797 CAGAGACAATACACCAGTGACG 58.754 50.000 4.48 0.00 0.00 4.35
2830 3865 4.258702 ACAGAGACAATACACCAGTGAC 57.741 45.455 4.48 0.00 0.00 3.67
2831 3866 4.955811 AACAGAGACAATACACCAGTGA 57.044 40.909 4.48 0.00 0.00 3.41
2832 3867 5.751680 CAAAACAGAGACAATACACCAGTG 58.248 41.667 0.00 0.00 0.00 3.66
2833 3868 4.275936 GCAAAACAGAGACAATACACCAGT 59.724 41.667 0.00 0.00 0.00 4.00
2834 3869 4.320494 GGCAAAACAGAGACAATACACCAG 60.320 45.833 0.00 0.00 0.00 4.00
2835 3870 3.568007 GGCAAAACAGAGACAATACACCA 59.432 43.478 0.00 0.00 0.00 4.17
2836 3871 3.821033 AGGCAAAACAGAGACAATACACC 59.179 43.478 0.00 0.00 0.00 4.16
2837 3872 5.239525 AGAAGGCAAAACAGAGACAATACAC 59.760 40.000 0.00 0.00 0.00 2.90
2838 3873 5.376625 AGAAGGCAAAACAGAGACAATACA 58.623 37.500 0.00 0.00 0.00 2.29
2839 3874 5.948992 AGAAGGCAAAACAGAGACAATAC 57.051 39.130 0.00 0.00 0.00 1.89
2840 3875 6.959639 AAAGAAGGCAAAACAGAGACAATA 57.040 33.333 0.00 0.00 0.00 1.90
2841 3876 5.859205 AAAGAAGGCAAAACAGAGACAAT 57.141 34.783 0.00 0.00 0.00 2.71
2842 3877 6.680378 GCTTAAAGAAGGCAAAACAGAGACAA 60.680 38.462 0.00 0.00 32.84 3.18
2843 3878 5.221048 GCTTAAAGAAGGCAAAACAGAGACA 60.221 40.000 0.00 0.00 32.84 3.41
2844 3879 5.009110 AGCTTAAAGAAGGCAAAACAGAGAC 59.991 40.000 0.00 0.00 32.84 3.36
2845 3880 5.133221 AGCTTAAAGAAGGCAAAACAGAGA 58.867 37.500 0.00 0.00 32.84 3.10
2846 3881 5.444663 AGCTTAAAGAAGGCAAAACAGAG 57.555 39.130 0.00 0.00 32.84 3.35
2847 3882 5.852282 AAGCTTAAAGAAGGCAAAACAGA 57.148 34.783 0.00 0.00 32.84 3.41
2848 3883 8.490355 CAATAAAGCTTAAAGAAGGCAAAACAG 58.510 33.333 0.00 0.00 32.84 3.16
2849 3884 7.440856 CCAATAAAGCTTAAAGAAGGCAAAACA 59.559 33.333 0.00 0.00 32.84 2.83
2850 3885 7.571244 GCCAATAAAGCTTAAAGAAGGCAAAAC 60.571 37.037 17.42 0.00 38.27 2.43
2851 3886 6.426633 GCCAATAAAGCTTAAAGAAGGCAAAA 59.573 34.615 17.42 0.00 38.27 2.44
2852 3887 5.931724 GCCAATAAAGCTTAAAGAAGGCAAA 59.068 36.000 17.42 0.00 38.27 3.68
2853 3888 5.245977 AGCCAATAAAGCTTAAAGAAGGCAA 59.754 36.000 21.70 0.00 37.24 4.52
2854 3889 4.772100 AGCCAATAAAGCTTAAAGAAGGCA 59.228 37.500 21.70 0.00 37.24 4.75
2855 3890 5.126222 AGAGCCAATAAAGCTTAAAGAAGGC 59.874 40.000 15.58 15.58 41.75 4.35
2856 3891 6.151817 ACAGAGCCAATAAAGCTTAAAGAAGG 59.848 38.462 0.00 0.00 41.75 3.46
2857 3892 7.150783 ACAGAGCCAATAAAGCTTAAAGAAG 57.849 36.000 0.00 0.00 41.75 2.85
2858 3893 7.524717 AACAGAGCCAATAAAGCTTAAAGAA 57.475 32.000 0.00 0.00 41.75 2.52
2859 3894 7.524717 AAACAGAGCCAATAAAGCTTAAAGA 57.475 32.000 0.00 0.00 41.75 2.52
2860 3895 7.653311 ACAAAACAGAGCCAATAAAGCTTAAAG 59.347 33.333 0.00 0.00 41.75 1.85
2861 3896 7.496747 ACAAAACAGAGCCAATAAAGCTTAAA 58.503 30.769 0.00 0.00 41.75 1.52
2862 3897 7.049799 ACAAAACAGAGCCAATAAAGCTTAA 57.950 32.000 0.00 0.00 41.75 1.85
2863 3898 6.567701 CGACAAAACAGAGCCAATAAAGCTTA 60.568 38.462 0.00 0.00 41.75 3.09
2864 3899 5.532557 GACAAAACAGAGCCAATAAAGCTT 58.467 37.500 0.00 0.00 41.75 3.74
2865 3900 4.320494 CGACAAAACAGAGCCAATAAAGCT 60.320 41.667 0.00 0.00 45.23 3.74
2866 3901 3.914364 CGACAAAACAGAGCCAATAAAGC 59.086 43.478 0.00 0.00 0.00 3.51
2867 3902 5.108385 ACGACAAAACAGAGCCAATAAAG 57.892 39.130 0.00 0.00 0.00 1.85
2868 3903 5.066634 TCAACGACAAAACAGAGCCAATAAA 59.933 36.000 0.00 0.00 0.00 1.40
2869 3904 4.576873 TCAACGACAAAACAGAGCCAATAA 59.423 37.500 0.00 0.00 0.00 1.40
2870 3905 4.130857 TCAACGACAAAACAGAGCCAATA 58.869 39.130 0.00 0.00 0.00 1.90
2871 3906 2.948979 TCAACGACAAAACAGAGCCAAT 59.051 40.909 0.00 0.00 0.00 3.16
2872 3907 2.360844 TCAACGACAAAACAGAGCCAA 58.639 42.857 0.00 0.00 0.00 4.52
2873 3908 2.031258 TCAACGACAAAACAGAGCCA 57.969 45.000 0.00 0.00 0.00 4.75
2874 3909 2.290641 ACATCAACGACAAAACAGAGCC 59.709 45.455 0.00 0.00 0.00 4.70
2875 3910 3.545633 GACATCAACGACAAAACAGAGC 58.454 45.455 0.00 0.00 0.00 4.09
2876 3911 3.362986 CGGACATCAACGACAAAACAGAG 60.363 47.826 0.00 0.00 0.00 3.35
2877 3912 2.542178 CGGACATCAACGACAAAACAGA 59.458 45.455 0.00 0.00 0.00 3.41
2878 3913 2.286833 ACGGACATCAACGACAAAACAG 59.713 45.455 0.00 0.00 0.00 3.16
2879 3914 2.281517 ACGGACATCAACGACAAAACA 58.718 42.857 0.00 0.00 0.00 2.83
2880 3915 3.328237 AACGGACATCAACGACAAAAC 57.672 42.857 0.00 0.00 0.00 2.43
2881 3916 4.358494 AAAACGGACATCAACGACAAAA 57.642 36.364 0.00 0.00 0.00 2.44
2882 3917 4.358494 AAAAACGGACATCAACGACAAA 57.642 36.364 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.