Multiple sequence alignment - TraesCS6B01G293200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G293200 chr6B 100.000 7609 0 0 1 7609 526743215 526735607 0.000000e+00 14052.0
1 TraesCS6B01G293200 chr6B 94.425 861 28 4 1 843 669004522 669005380 0.000000e+00 1306.0
2 TraesCS6B01G293200 chr6B 94.353 850 41 6 2571 3416 286752017 286751171 0.000000e+00 1297.0
3 TraesCS6B01G293200 chr6B 94.138 853 31 3 1 835 524370138 524370989 0.000000e+00 1280.0
4 TraesCS6B01G293200 chr6B 91.715 857 52 3 3 842 49200703 49199849 0.000000e+00 1171.0
5 TraesCS6B01G293200 chr6B 85.979 756 87 16 998 1744 526725089 526724344 0.000000e+00 791.0
6 TraesCS6B01G293200 chr6D 97.126 2192 55 3 4613 6804 352152078 352154261 0.000000e+00 3692.0
7 TraesCS6B01G293200 chr6D 81.031 1998 301 50 4674 6616 352354585 352356559 0.000000e+00 1519.0
8 TraesCS6B01G293200 chr6D 90.298 1041 32 12 837 1841 352149204 352150211 0.000000e+00 1299.0
9 TraesCS6B01G293200 chr6D 87.888 999 113 4 3406 4397 352150882 352151879 0.000000e+00 1168.0
10 TraesCS6B01G293200 chr6D 86.207 754 81 18 998 1741 352351533 352352273 0.000000e+00 795.0
11 TraesCS6B01G293200 chr6D 87.619 315 21 7 2284 2580 352150580 352150894 4.370000e-92 350.0
12 TraesCS6B01G293200 chr6D 87.031 293 27 6 6864 7151 352154246 352154532 3.430000e-83 320.0
13 TraesCS6B01G293200 chr6D 87.361 269 33 1 7309 7576 352217180 352217448 2.670000e-79 307.0
14 TraesCS6B01G293200 chr6D 92.357 157 12 0 4394 4550 352151923 352152079 2.760000e-54 224.0
15 TraesCS6B01G293200 chr6A 95.095 2202 73 14 4615 6807 490838344 490836169 0.000000e+00 3435.0
16 TraesCS6B01G293200 chr6A 81.263 1996 298 43 4675 6616 490496531 490494558 0.000000e+00 1544.0
17 TraesCS6B01G293200 chr6A 91.231 1129 37 15 837 1925 490841141 490840035 0.000000e+00 1480.0
18 TraesCS6B01G293200 chr6A 86.016 758 82 18 998 1744 490500173 490499429 0.000000e+00 791.0
19 TraesCS6B01G293200 chr6A 84.848 759 79 15 6864 7594 490836187 490835437 0.000000e+00 732.0
20 TraesCS6B01G293200 chr6A 88.652 282 25 4 2308 2582 490839918 490839637 3.400000e-88 337.0
21 TraesCS6B01G293200 chr4B 95.354 861 22 2 1 843 500056380 500055520 0.000000e+00 1352.0
22 TraesCS6B01G293200 chr4B 94.055 841 46 4 2578 3414 95715920 95716760 0.000000e+00 1273.0
23 TraesCS6B01G293200 chr4B 93.496 861 37 3 1 843 327348240 327347381 0.000000e+00 1262.0
24 TraesCS6B01G293200 chr4B 89.474 57 4 2 6810 6864 448306473 448306417 3.810000e-08 71.3
25 TraesCS6B01G293200 chr4B 100.000 28 0 0 7127 7154 167921256 167921229 1.400000e-02 52.8
26 TraesCS6B01G293200 chr2A 79.192 2004 333 57 4675 6638 763367408 763369367 0.000000e+00 1314.0
27 TraesCS6B01G293200 chr2A 86.591 701 68 15 1063 1741 763364618 763365314 0.000000e+00 750.0
28 TraesCS6B01G293200 chr2A 75.959 391 68 20 1349 1727 694631343 694631719 2.180000e-40 178.0
29 TraesCS6B01G293200 chrUn 94.425 861 28 4 1 843 343876239 343875381 0.000000e+00 1306.0
30 TraesCS6B01G293200 chrUn 94.934 829 39 2 2580 3405 30344540 30343712 0.000000e+00 1295.0
31 TraesCS6B01G293200 chrUn 94.604 834 40 3 2576 3405 197210985 197211817 0.000000e+00 1286.0
32 TraesCS6B01G293200 chrUn 77.935 988 179 24 4679 5631 84016994 84016011 1.420000e-161 580.0
33 TraesCS6B01G293200 chrUn 96.667 60 2 0 1632 1691 84018753 84018694 4.860000e-17 100.0
34 TraesCS6B01G293200 chrUn 94.286 35 2 0 6807 6841 41399622 41399656 4.000000e-03 54.7
35 TraesCS6B01G293200 chr2B 79.090 1999 340 51 4675 6638 797625442 797627397 0.000000e+00 1304.0
36 TraesCS6B01G293200 chr2B 94.293 841 41 6 2574 3412 691420090 691420925 0.000000e+00 1280.0
37 TraesCS6B01G293200 chr2B 94.572 829 41 3 2580 3405 448587108 448586281 0.000000e+00 1279.0
38 TraesCS6B01G293200 chr2B 93.333 855 24 4 1 837 50365969 50365130 0.000000e+00 1232.0
39 TraesCS6B01G293200 chr2B 93.168 849 38 4 1 831 81746 80900 0.000000e+00 1229.0
40 TraesCS6B01G293200 chr2B 81.010 832 143 11 3574 4392 668567588 668566759 0.000000e+00 647.0
41 TraesCS6B01G293200 chr2B 90.517 464 44 0 1063 1526 797622796 797623259 1.400000e-171 614.0
42 TraesCS6B01G293200 chr2B 75.711 387 69 21 1349 1727 660676502 660676871 3.650000e-38 171.0
43 TraesCS6B01G293200 chr3B 94.296 859 30 3 1 842 9315463 9314607 0.000000e+00 1297.0
44 TraesCS6B01G293200 chr3B 94.371 835 39 6 2579 3412 724044570 724045397 0.000000e+00 1275.0
45 TraesCS6B01G293200 chr3B 84.302 172 22 4 3575 3741 65342392 65342563 6.110000e-36 163.0
46 TraesCS6B01G293200 chr3B 97.500 40 1 0 4347 4386 63986277 63986316 1.370000e-07 69.4
47 TraesCS6B01G293200 chr3B 87.273 55 4 3 6810 6862 162514328 162514275 8.250000e-05 60.2
48 TraesCS6B01G293200 chr3B 100.000 28 0 0 7127 7154 433686032 433686059 1.400000e-02 52.8
49 TraesCS6B01G293200 chr3B 100.000 28 0 0 7126 7153 743122514 743122487 1.400000e-02 52.8
50 TraesCS6B01G293200 chr7D 94.504 837 42 4 2578 3411 174792090 174792925 0.000000e+00 1288.0
51 TraesCS6B01G293200 chr7D 78.138 988 178 21 4678 5631 59734283 59733300 1.830000e-165 593.0
52 TraesCS6B01G293200 chr7D 82.915 638 86 14 3668 4299 252051585 252052205 3.100000e-153 553.0
53 TraesCS6B01G293200 chr7D 77.974 849 168 14 3574 4406 8744784 8743939 1.460000e-141 514.0
54 TraesCS6B01G293200 chr7D 86.492 459 48 8 1072 1529 59738521 59738076 6.860000e-135 492.0
55 TraesCS6B01G293200 chr7D 94.444 108 6 0 1632 1739 59737966 59737859 4.720000e-37 167.0
56 TraesCS6B01G293200 chr7D 84.416 77 9 2 6805 6878 546414501 546414425 1.060000e-08 73.1
57 TraesCS6B01G293200 chr7D 88.525 61 3 4 6805 6862 124643550 124643609 3.810000e-08 71.3
58 TraesCS6B01G293200 chr7B 94.498 836 40 4 2582 3412 716136896 716137730 0.000000e+00 1284.0
59 TraesCS6B01G293200 chr7B 90.346 839 75 5 1 834 697160114 697160951 0.000000e+00 1096.0
60 TraesCS6B01G293200 chr7B 79.618 314 51 9 1926 2233 700602782 700602476 5.980000e-51 213.0
61 TraesCS6B01G293200 chr7B 79.100 311 54 7 1919 2225 663260683 663260986 3.600000e-48 204.0
62 TraesCS6B01G293200 chr5B 93.904 853 34 9 1 836 450541682 450540831 0.000000e+00 1271.0
63 TraesCS6B01G293200 chr5B 78.649 829 152 16 3580 4397 26969961 26969147 1.880000e-145 527.0
64 TraesCS6B01G293200 chr5B 81.570 293 42 11 1937 2222 360843279 360842992 1.650000e-56 231.0
65 TraesCS6B01G293200 chr1D 79.788 851 140 15 3575 4397 429029350 429030196 2.360000e-164 590.0
66 TraesCS6B01G293200 chr1B 79.715 843 145 16 3577 4397 622077708 622078546 3.060000e-163 586.0
67 TraesCS6B01G293200 chr3D 80.000 825 137 19 3575 4381 153173484 153174298 1.100000e-162 584.0
68 TraesCS6B01G293200 chr3D 100.000 28 0 0 7126 7153 559611199 559611172 1.400000e-02 52.8
69 TraesCS6B01G293200 chr5D 77.844 835 156 21 3580 4390 361600891 361601720 2.470000e-134 490.0
70 TraesCS6B01G293200 chr5D 71.243 692 149 34 3724 4390 218937225 218936559 6.200000e-26 130.0
71 TraesCS6B01G293200 chr5D 96.774 31 1 0 7123 7153 487285626 487285656 1.400000e-02 52.8
72 TraesCS6B01G293200 chr7A 86.404 456 48 5 1072 1526 63872419 63872861 3.190000e-133 486.0
73 TraesCS6B01G293200 chr7A 79.479 614 116 7 4660 5269 63874613 63875220 1.960000e-115 427.0
74 TraesCS6B01G293200 chr1A 83.162 291 41 8 1937 2222 561408424 561408137 7.570000e-65 259.0
75 TraesCS6B01G293200 chr1A 81.250 288 51 3 1937 2222 71685323 71685609 5.940000e-56 230.0
76 TraesCS6B01G293200 chr1A 81.495 281 45 6 1946 2221 507955381 507955103 2.760000e-54 224.0
77 TraesCS6B01G293200 chr4A 83.453 278 44 2 1946 2222 589511362 589511086 2.720000e-64 257.0
78 TraesCS6B01G293200 chr5A 81.034 290 47 6 1937 2222 687041891 687042176 2.760000e-54 224.0
79 TraesCS6B01G293200 chr5A 80.345 290 51 6 1937 2222 342411050 342411337 1.660000e-51 215.0
80 TraesCS6B01G293200 chr5A 91.304 46 3 1 4346 4390 292252439 292252394 2.290000e-05 62.1
81 TraesCS6B01G293200 chr2D 85.859 99 14 0 1629 1727 554475783 554475881 1.040000e-18 106.0
82 TraesCS6B01G293200 chr2D 87.500 64 7 1 6806 6869 435339847 435339909 1.060000e-08 73.1
83 TraesCS6B01G293200 chr2D 100.000 28 0 0 7126 7153 642385718 642385691 1.400000e-02 52.8
84 TraesCS6B01G293200 chr3A 100.000 28 0 0 7126 7153 32560311 32560338 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G293200 chr6B 526735607 526743215 7608 True 14052.000000 14052 100.0000 1 7609 1 chr6B.!!$R4 7608
1 TraesCS6B01G293200 chr6B 669004522 669005380 858 False 1306.000000 1306 94.4250 1 843 1 chr6B.!!$F2 842
2 TraesCS6B01G293200 chr6B 286751171 286752017 846 True 1297.000000 1297 94.3530 2571 3416 1 chr6B.!!$R2 845
3 TraesCS6B01G293200 chr6B 524370138 524370989 851 False 1280.000000 1280 94.1380 1 835 1 chr6B.!!$F1 834
4 TraesCS6B01G293200 chr6B 49199849 49200703 854 True 1171.000000 1171 91.7150 3 842 1 chr6B.!!$R1 839
5 TraesCS6B01G293200 chr6B 526724344 526725089 745 True 791.000000 791 85.9790 998 1744 1 chr6B.!!$R3 746
6 TraesCS6B01G293200 chr6D 352149204 352154532 5328 False 1175.500000 3692 90.3865 837 7151 6 chr6D.!!$F2 6314
7 TraesCS6B01G293200 chr6D 352351533 352356559 5026 False 1157.000000 1519 83.6190 998 6616 2 chr6D.!!$F3 5618
8 TraesCS6B01G293200 chr6A 490835437 490841141 5704 True 1496.000000 3435 89.9565 837 7594 4 chr6A.!!$R2 6757
9 TraesCS6B01G293200 chr6A 490494558 490500173 5615 True 1167.500000 1544 83.6395 998 6616 2 chr6A.!!$R1 5618
10 TraesCS6B01G293200 chr4B 500055520 500056380 860 True 1352.000000 1352 95.3540 1 843 1 chr4B.!!$R4 842
11 TraesCS6B01G293200 chr4B 95715920 95716760 840 False 1273.000000 1273 94.0550 2578 3414 1 chr4B.!!$F1 836
12 TraesCS6B01G293200 chr4B 327347381 327348240 859 True 1262.000000 1262 93.4960 1 843 1 chr4B.!!$R2 842
13 TraesCS6B01G293200 chr2A 763364618 763369367 4749 False 1032.000000 1314 82.8915 1063 6638 2 chr2A.!!$F2 5575
14 TraesCS6B01G293200 chrUn 343875381 343876239 858 True 1306.000000 1306 94.4250 1 843 1 chrUn.!!$R2 842
15 TraesCS6B01G293200 chrUn 30343712 30344540 828 True 1295.000000 1295 94.9340 2580 3405 1 chrUn.!!$R1 825
16 TraesCS6B01G293200 chrUn 197210985 197211817 832 False 1286.000000 1286 94.6040 2576 3405 1 chrUn.!!$F2 829
17 TraesCS6B01G293200 chrUn 84016011 84018753 2742 True 340.000000 580 87.3010 1632 5631 2 chrUn.!!$R3 3999
18 TraesCS6B01G293200 chr2B 691420090 691420925 835 False 1280.000000 1280 94.2930 2574 3412 1 chr2B.!!$F2 838
19 TraesCS6B01G293200 chr2B 448586281 448587108 827 True 1279.000000 1279 94.5720 2580 3405 1 chr2B.!!$R3 825
20 TraesCS6B01G293200 chr2B 50365130 50365969 839 True 1232.000000 1232 93.3330 1 837 1 chr2B.!!$R2 836
21 TraesCS6B01G293200 chr2B 80900 81746 846 True 1229.000000 1229 93.1680 1 831 1 chr2B.!!$R1 830
22 TraesCS6B01G293200 chr2B 797622796 797627397 4601 False 959.000000 1304 84.8035 1063 6638 2 chr2B.!!$F3 5575
23 TraesCS6B01G293200 chr2B 668566759 668567588 829 True 647.000000 647 81.0100 3574 4392 1 chr2B.!!$R4 818
24 TraesCS6B01G293200 chr3B 9314607 9315463 856 True 1297.000000 1297 94.2960 1 842 1 chr3B.!!$R1 841
25 TraesCS6B01G293200 chr3B 724044570 724045397 827 False 1275.000000 1275 94.3710 2579 3412 1 chr3B.!!$F4 833
26 TraesCS6B01G293200 chr7D 174792090 174792925 835 False 1288.000000 1288 94.5040 2578 3411 1 chr7D.!!$F2 833
27 TraesCS6B01G293200 chr7D 252051585 252052205 620 False 553.000000 553 82.9150 3668 4299 1 chr7D.!!$F3 631
28 TraesCS6B01G293200 chr7D 8743939 8744784 845 True 514.000000 514 77.9740 3574 4406 1 chr7D.!!$R1 832
29 TraesCS6B01G293200 chr7D 59733300 59738521 5221 True 417.333333 593 86.3580 1072 5631 3 chr7D.!!$R3 4559
30 TraesCS6B01G293200 chr7B 716136896 716137730 834 False 1284.000000 1284 94.4980 2582 3412 1 chr7B.!!$F3 830
31 TraesCS6B01G293200 chr7B 697160114 697160951 837 False 1096.000000 1096 90.3460 1 834 1 chr7B.!!$F2 833
32 TraesCS6B01G293200 chr5B 450540831 450541682 851 True 1271.000000 1271 93.9040 1 836 1 chr5B.!!$R3 835
33 TraesCS6B01G293200 chr5B 26969147 26969961 814 True 527.000000 527 78.6490 3580 4397 1 chr5B.!!$R1 817
34 TraesCS6B01G293200 chr1D 429029350 429030196 846 False 590.000000 590 79.7880 3575 4397 1 chr1D.!!$F1 822
35 TraesCS6B01G293200 chr1B 622077708 622078546 838 False 586.000000 586 79.7150 3577 4397 1 chr1B.!!$F1 820
36 TraesCS6B01G293200 chr3D 153173484 153174298 814 False 584.000000 584 80.0000 3575 4381 1 chr3D.!!$F1 806
37 TraesCS6B01G293200 chr5D 361600891 361601720 829 False 490.000000 490 77.8440 3580 4390 1 chr5D.!!$F1 810
38 TraesCS6B01G293200 chr7A 63872419 63875220 2801 False 456.500000 486 82.9415 1072 5269 2 chr7A.!!$F1 4197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1038 0.469331 CAGACCCCTGCTCCGGTATA 60.469 60.000 0.00 0.0 33.07 1.47 F
1753 1885 0.179124 GAGCACCTCTGACGATCACC 60.179 60.000 0.00 0.0 0.00 4.02 F
3567 7086 0.036164 TCCGCTGGCACAACAATAGT 59.964 50.000 0.00 0.0 38.70 2.12 F
3568 7087 0.881118 CCGCTGGCACAACAATAGTT 59.119 50.000 0.00 0.0 38.70 2.24 F
3751 10517 0.962356 CTGCGCCCACCAGAGAATTT 60.962 55.000 4.18 0.0 32.03 1.82 F
4659 11502 1.001048 TGTAGCGCGACACTAACAAGT 60.001 47.619 19.85 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 1963 0.025898 CATCAACGATGTGCGCTCTG 59.974 55.000 9.73 0.00 46.04 3.35 R
3751 10517 0.541392 ATGGCATAAGAGCGTGGTGA 59.459 50.000 0.00 0.00 34.64 4.02 R
4636 11479 1.068125 TGTTAGTGTCGCGCTACATGT 60.068 47.619 18.34 11.05 0.00 3.21 R
5281 12140 1.196808 CTGTTTGTCCATGTACGCACC 59.803 52.381 0.00 0.00 0.00 5.01 R
5700 12617 0.745845 ATGACATTCAGACCAGGCGC 60.746 55.000 0.00 0.00 0.00 6.53 R
6617 13544 0.250234 TTGAGGCATGGAAGACGAGG 59.750 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 184 2.677971 CCTCGGAACAGGCATAACG 58.322 57.895 0.00 0.00 0.00 3.18
301 320 7.201812 CCAGAATCTCTATGAATCGATCTAGGG 60.202 44.444 0.00 0.81 30.21 3.53
469 516 3.453679 GCCGTCGCCTTCTCCTCT 61.454 66.667 0.00 0.00 0.00 3.69
470 517 2.802106 CCGTCGCCTTCTCCTCTC 59.198 66.667 0.00 0.00 0.00 3.20
471 518 2.405594 CGTCGCCTTCTCCTCTCG 59.594 66.667 0.00 0.00 0.00 4.04
472 519 2.103340 GTCGCCTTCTCCTCTCGC 59.897 66.667 0.00 0.00 0.00 5.03
473 520 3.141488 TCGCCTTCTCCTCTCGCC 61.141 66.667 0.00 0.00 0.00 5.54
474 521 3.144193 CGCCTTCTCCTCTCGCCT 61.144 66.667 0.00 0.00 0.00 5.52
475 522 2.716017 CGCCTTCTCCTCTCGCCTT 61.716 63.158 0.00 0.00 0.00 4.35
476 523 1.142965 GCCTTCTCCTCTCGCCTTC 59.857 63.158 0.00 0.00 0.00 3.46
477 524 1.326951 GCCTTCTCCTCTCGCCTTCT 61.327 60.000 0.00 0.00 0.00 2.85
478 525 0.744281 CCTTCTCCTCTCGCCTTCTC 59.256 60.000 0.00 0.00 0.00 2.87
479 526 1.684869 CCTTCTCCTCTCGCCTTCTCT 60.685 57.143 0.00 0.00 0.00 3.10
480 527 2.099405 CTTCTCCTCTCGCCTTCTCTT 58.901 52.381 0.00 0.00 0.00 2.85
481 528 1.757682 TCTCCTCTCGCCTTCTCTTC 58.242 55.000 0.00 0.00 0.00 2.87
513 560 2.904866 GCGAGTGGGTTGTGCCAA 60.905 61.111 0.00 0.00 39.65 4.52
760 807 2.875317 TGTTTGCTACAAGATTCGTGCA 59.125 40.909 0.00 0.00 32.64 4.57
797 844 3.998672 GGAGGCGTGTGGTCGGAA 61.999 66.667 0.00 0.00 0.00 4.30
908 957 2.377880 CAAACGTTACGCCCAAAGAAC 58.622 47.619 4.09 0.00 0.00 3.01
916 965 1.234615 CGCCCAAAGAACGTGGACAT 61.235 55.000 0.00 0.00 38.54 3.06
931 980 4.230657 GTGGACATAATAGTAGCTGCTCG 58.769 47.826 7.91 0.00 0.00 5.03
983 1033 2.503061 CATCAGACCCCTGCTCCG 59.497 66.667 0.00 0.00 40.20 4.63
984 1034 2.765807 ATCAGACCCCTGCTCCGG 60.766 66.667 0.00 0.00 40.20 5.14
985 1035 3.625632 ATCAGACCCCTGCTCCGGT 62.626 63.158 0.00 0.00 40.20 5.28
987 1037 1.762460 CAGACCCCTGCTCCGGTAT 60.762 63.158 0.00 0.00 33.07 2.73
988 1038 0.469331 CAGACCCCTGCTCCGGTATA 60.469 60.000 0.00 0.00 33.07 1.47
991 1065 1.831286 CCCCTGCTCCGGTATACGT 60.831 63.158 0.00 0.00 42.24 3.57
1494 1571 0.965439 GCTCCATCTCCTACATCGCT 59.035 55.000 0.00 0.00 0.00 4.93
1720 1852 3.575351 GAGCACGCTCGTCCAGGTT 62.575 63.158 2.78 0.00 33.06 3.50
1753 1885 0.179124 GAGCACCTCTGACGATCACC 60.179 60.000 0.00 0.00 0.00 4.02
1767 1903 2.031069 CGATCACCATACCCACTACTCG 60.031 54.545 0.00 0.00 0.00 4.18
1872 2182 7.168905 AGTTGGTTGGATTTTTGTTGGTTTTA 58.831 30.769 0.00 0.00 0.00 1.52
1906 2219 0.958876 ATTTTGGAGACGGGCGAACC 60.959 55.000 0.00 0.00 0.00 3.62
1914 2234 2.978010 CGGGCGAACCAAGCACTT 60.978 61.111 0.00 0.00 40.22 3.16
1925 2245 3.165071 ACCAAGCACTTCCCCATTAAAG 58.835 45.455 0.00 0.00 0.00 1.85
1926 2246 2.094026 CCAAGCACTTCCCCATTAAAGC 60.094 50.000 0.00 0.00 0.00 3.51
1927 2247 1.852633 AGCACTTCCCCATTAAAGCC 58.147 50.000 0.00 0.00 0.00 4.35
1928 2248 1.359130 AGCACTTCCCCATTAAAGCCT 59.641 47.619 0.00 0.00 0.00 4.58
1929 2249 1.751351 GCACTTCCCCATTAAAGCCTC 59.249 52.381 0.00 0.00 0.00 4.70
1930 2250 2.379005 CACTTCCCCATTAAAGCCTCC 58.621 52.381 0.00 0.00 0.00 4.30
1931 2251 2.024941 CACTTCCCCATTAAAGCCTCCT 60.025 50.000 0.00 0.00 0.00 3.69
1932 2252 2.654896 ACTTCCCCATTAAAGCCTCCTT 59.345 45.455 0.00 0.00 0.00 3.36
1933 2253 3.077543 ACTTCCCCATTAAAGCCTCCTTT 59.922 43.478 0.00 0.00 43.43 3.11
1934 2254 3.100207 TCCCCATTAAAGCCTCCTTTG 57.900 47.619 0.00 0.00 41.24 2.77
1935 2255 2.110578 CCCCATTAAAGCCTCCTTTGG 58.889 52.381 0.00 0.00 41.24 3.28
1936 2256 2.559705 CCCCATTAAAGCCTCCTTTGGT 60.560 50.000 0.00 0.00 41.24 3.67
1937 2257 3.173151 CCCATTAAAGCCTCCTTTGGTT 58.827 45.455 0.00 0.00 41.24 3.67
1938 2258 3.582647 CCCATTAAAGCCTCCTTTGGTTT 59.417 43.478 0.00 0.00 41.24 3.27
1939 2259 4.563374 CCCATTAAAGCCTCCTTTGGTTTG 60.563 45.833 0.00 0.00 41.24 2.93
1940 2260 4.040339 CCATTAAAGCCTCCTTTGGTTTGT 59.960 41.667 0.00 0.00 41.24 2.83
1941 2261 5.454613 CCATTAAAGCCTCCTTTGGTTTGTT 60.455 40.000 0.00 0.00 41.24 2.83
1942 2262 5.685520 TTAAAGCCTCCTTTGGTTTGTTT 57.314 34.783 0.00 0.00 41.24 2.83
1943 2263 3.541996 AAGCCTCCTTTGGTTTGTTTG 57.458 42.857 0.00 0.00 0.00 2.93
1944 2264 1.762370 AGCCTCCTTTGGTTTGTTTGG 59.238 47.619 0.00 0.00 0.00 3.28
1945 2265 1.760029 GCCTCCTTTGGTTTGTTTGGA 59.240 47.619 0.00 0.00 0.00 3.53
1946 2266 2.224042 GCCTCCTTTGGTTTGTTTGGAG 60.224 50.000 0.00 0.00 40.34 3.86
1947 2267 3.733443 CTCCTTTGGTTTGTTTGGAGG 57.267 47.619 0.00 0.00 37.87 4.30
1948 2268 3.295973 CTCCTTTGGTTTGTTTGGAGGA 58.704 45.455 0.00 0.00 37.87 3.71
1949 2269 3.704061 CTCCTTTGGTTTGTTTGGAGGAA 59.296 43.478 0.00 0.00 37.87 3.36
1950 2270 4.294347 TCCTTTGGTTTGTTTGGAGGAAT 58.706 39.130 0.00 0.00 0.00 3.01
1951 2271 4.719273 TCCTTTGGTTTGTTTGGAGGAATT 59.281 37.500 0.00 0.00 0.00 2.17
1952 2272 5.190726 TCCTTTGGTTTGTTTGGAGGAATTT 59.809 36.000 0.00 0.00 0.00 1.82
1953 2273 5.885352 CCTTTGGTTTGTTTGGAGGAATTTT 59.115 36.000 0.00 0.00 0.00 1.82
1954 2274 6.183360 CCTTTGGTTTGTTTGGAGGAATTTTG 60.183 38.462 0.00 0.00 0.00 2.44
1955 2275 5.428184 TGGTTTGTTTGGAGGAATTTTGT 57.572 34.783 0.00 0.00 0.00 2.83
1956 2276 6.546428 TGGTTTGTTTGGAGGAATTTTGTA 57.454 33.333 0.00 0.00 0.00 2.41
1957 2277 6.578023 TGGTTTGTTTGGAGGAATTTTGTAG 58.422 36.000 0.00 0.00 0.00 2.74
1958 2278 5.989168 GGTTTGTTTGGAGGAATTTTGTAGG 59.011 40.000 0.00 0.00 0.00 3.18
1959 2279 6.183360 GGTTTGTTTGGAGGAATTTTGTAGGA 60.183 38.462 0.00 0.00 0.00 2.94
1960 2280 7.269316 GTTTGTTTGGAGGAATTTTGTAGGAA 58.731 34.615 0.00 0.00 0.00 3.36
1961 2281 7.610580 TTGTTTGGAGGAATTTTGTAGGAAT 57.389 32.000 0.00 0.00 0.00 3.01
1962 2282 7.610580 TGTTTGGAGGAATTTTGTAGGAATT 57.389 32.000 0.00 0.00 0.00 2.17
1963 2283 8.028652 TGTTTGGAGGAATTTTGTAGGAATTT 57.971 30.769 0.00 0.00 0.00 1.82
1964 2284 8.490311 TGTTTGGAGGAATTTTGTAGGAATTTT 58.510 29.630 0.00 0.00 0.00 1.82
1965 2285 9.990360 GTTTGGAGGAATTTTGTAGGAATTTTA 57.010 29.630 0.00 0.00 0.00 1.52
1967 2287 9.594936 TTGGAGGAATTTTGTAGGAATTTTAGA 57.405 29.630 0.00 0.00 0.00 2.10
1968 2288 9.243105 TGGAGGAATTTTGTAGGAATTTTAGAG 57.757 33.333 0.00 0.00 0.00 2.43
1969 2289 8.687242 GGAGGAATTTTGTAGGAATTTTAGAGG 58.313 37.037 0.00 0.00 0.00 3.69
1970 2290 9.462606 GAGGAATTTTGTAGGAATTTTAGAGGA 57.537 33.333 0.00 0.00 0.00 3.71
1971 2291 9.997172 AGGAATTTTGTAGGAATTTTAGAGGAT 57.003 29.630 0.00 0.00 0.00 3.24
2001 2321 9.967346 AACTTTGTAGGAAAATTTCTTTAGAGC 57.033 29.630 5.65 0.00 0.00 4.09
2002 2322 8.577296 ACTTTGTAGGAAAATTTCTTTAGAGCC 58.423 33.333 5.65 0.00 0.00 4.70
2003 2323 7.462571 TTGTAGGAAAATTTCTTTAGAGCCC 57.537 36.000 5.65 0.00 0.00 5.19
2004 2324 6.790319 TGTAGGAAAATTTCTTTAGAGCCCT 58.210 36.000 5.65 0.00 0.00 5.19
2005 2325 7.238710 TGTAGGAAAATTTCTTTAGAGCCCTT 58.761 34.615 5.65 0.00 0.00 3.95
2006 2326 7.728532 TGTAGGAAAATTTCTTTAGAGCCCTTT 59.271 33.333 5.65 0.00 0.00 3.11
2007 2327 6.997655 AGGAAAATTTCTTTAGAGCCCTTTG 58.002 36.000 5.65 0.00 0.00 2.77
2008 2328 6.782494 AGGAAAATTTCTTTAGAGCCCTTTGA 59.218 34.615 5.65 0.00 0.00 2.69
2009 2329 7.455953 AGGAAAATTTCTTTAGAGCCCTTTGAT 59.544 33.333 5.65 0.00 0.00 2.57
2010 2330 8.097038 GGAAAATTTCTTTAGAGCCCTTTGATT 58.903 33.333 5.65 0.00 0.00 2.57
2011 2331 9.494271 GAAAATTTCTTTAGAGCCCTTTGATTT 57.506 29.630 0.00 0.00 0.00 2.17
2012 2332 8.837788 AAATTTCTTTAGAGCCCTTTGATTTG 57.162 30.769 0.00 0.00 0.00 2.32
2013 2333 6.976934 TTTCTTTAGAGCCCTTTGATTTGT 57.023 33.333 0.00 0.00 0.00 2.83
2014 2334 8.650143 ATTTCTTTAGAGCCCTTTGATTTGTA 57.350 30.769 0.00 0.00 0.00 2.41
2015 2335 7.687941 TTCTTTAGAGCCCTTTGATTTGTAG 57.312 36.000 0.00 0.00 0.00 2.74
2016 2336 6.180472 TCTTTAGAGCCCTTTGATTTGTAGG 58.820 40.000 0.00 0.00 0.00 3.18
2017 2337 5.772393 TTAGAGCCCTTTGATTTGTAGGA 57.228 39.130 0.00 0.00 0.00 2.94
2018 2338 4.227864 AGAGCCCTTTGATTTGTAGGAG 57.772 45.455 0.00 0.00 0.00 3.69
2019 2339 3.589288 AGAGCCCTTTGATTTGTAGGAGT 59.411 43.478 0.00 0.00 0.00 3.85
2020 2340 3.690460 AGCCCTTTGATTTGTAGGAGTG 58.310 45.455 0.00 0.00 0.00 3.51
2021 2341 2.755103 GCCCTTTGATTTGTAGGAGTGG 59.245 50.000 0.00 0.00 0.00 4.00
2022 2342 3.561313 GCCCTTTGATTTGTAGGAGTGGA 60.561 47.826 0.00 0.00 0.00 4.02
2023 2343 4.860022 CCCTTTGATTTGTAGGAGTGGAT 58.140 43.478 0.00 0.00 0.00 3.41
2024 2344 5.631481 GCCCTTTGATTTGTAGGAGTGGATA 60.631 44.000 0.00 0.00 0.00 2.59
2025 2345 5.823045 CCCTTTGATTTGTAGGAGTGGATAC 59.177 44.000 0.00 0.00 0.00 2.24
2157 2477 8.843885 TTCTCTATAGAAATTGAGATGCATGG 57.156 34.615 2.46 0.00 41.55 3.66
2158 2478 6.877855 TCTCTATAGAAATTGAGATGCATGGC 59.122 38.462 2.46 0.00 38.53 4.40
2159 2479 6.536447 TCTATAGAAATTGAGATGCATGGCA 58.464 36.000 2.46 0.00 44.86 4.92
2172 2492 4.635699 TGCATGGCATCTCATCTTCTAT 57.364 40.909 0.00 0.00 31.71 1.98
2173 2493 5.750352 TGCATGGCATCTCATCTTCTATA 57.250 39.130 0.00 0.00 31.71 1.31
2174 2494 6.117975 TGCATGGCATCTCATCTTCTATAA 57.882 37.500 0.00 0.00 31.71 0.98
2175 2495 6.718294 TGCATGGCATCTCATCTTCTATAAT 58.282 36.000 0.00 0.00 31.71 1.28
2176 2496 7.173032 TGCATGGCATCTCATCTTCTATAATT 58.827 34.615 0.00 0.00 31.71 1.40
2177 2497 7.668469 TGCATGGCATCTCATCTTCTATAATTT 59.332 33.333 0.00 0.00 31.71 1.82
2178 2498 8.521176 GCATGGCATCTCATCTTCTATAATTTT 58.479 33.333 0.00 0.00 0.00 1.82
2180 2500 8.627208 TGGCATCTCATCTTCTATAATTTTCC 57.373 34.615 0.00 0.00 0.00 3.13
2181 2501 8.443176 TGGCATCTCATCTTCTATAATTTTCCT 58.557 33.333 0.00 0.00 0.00 3.36
2182 2502 9.950496 GGCATCTCATCTTCTATAATTTTCCTA 57.050 33.333 0.00 0.00 0.00 2.94
2202 2522 8.896722 TTCCTATTCCTATAGTATTCCTGTCC 57.103 38.462 0.00 0.00 33.29 4.02
2203 2523 8.245929 TCCTATTCCTATAGTATTCCTGTCCT 57.754 38.462 0.00 0.00 33.29 3.85
2204 2524 9.360470 TCCTATTCCTATAGTATTCCTGTCCTA 57.640 37.037 0.00 0.00 33.29 2.94
2209 2529 9.535170 TTCCTATAGTATTCCTGTCCTATGAAG 57.465 37.037 0.00 0.00 0.00 3.02
2210 2530 7.616150 TCCTATAGTATTCCTGTCCTATGAAGC 59.384 40.741 0.00 0.00 0.00 3.86
2211 2531 7.397476 CCTATAGTATTCCTGTCCTATGAAGCA 59.603 40.741 0.00 0.00 0.00 3.91
2212 2532 5.957771 AGTATTCCTGTCCTATGAAGCAA 57.042 39.130 0.00 0.00 0.00 3.91
2213 2533 6.313519 AGTATTCCTGTCCTATGAAGCAAA 57.686 37.500 0.00 0.00 0.00 3.68
2214 2534 6.352516 AGTATTCCTGTCCTATGAAGCAAAG 58.647 40.000 0.00 0.00 0.00 2.77
2215 2535 4.908601 TTCCTGTCCTATGAAGCAAAGA 57.091 40.909 0.00 0.00 0.00 2.52
2216 2536 4.908601 TCCTGTCCTATGAAGCAAAGAA 57.091 40.909 0.00 0.00 0.00 2.52
2217 2537 4.836825 TCCTGTCCTATGAAGCAAAGAAG 58.163 43.478 0.00 0.00 0.00 2.85
2218 2538 3.944015 CCTGTCCTATGAAGCAAAGAAGG 59.056 47.826 0.00 0.00 0.00 3.46
2219 2539 3.347216 TGTCCTATGAAGCAAAGAAGGC 58.653 45.455 0.00 0.00 0.00 4.35
2220 2540 2.685388 GTCCTATGAAGCAAAGAAGGCC 59.315 50.000 0.00 0.00 0.00 5.19
2221 2541 2.578021 TCCTATGAAGCAAAGAAGGCCT 59.422 45.455 0.00 0.00 0.00 5.19
2222 2542 3.780294 TCCTATGAAGCAAAGAAGGCCTA 59.220 43.478 5.16 0.00 0.00 3.93
2223 2543 4.227300 TCCTATGAAGCAAAGAAGGCCTAA 59.773 41.667 5.16 0.00 0.00 2.69
2224 2544 4.949856 CCTATGAAGCAAAGAAGGCCTAAA 59.050 41.667 5.16 0.00 0.00 1.85
2243 2565 7.148689 GGCCTAAATTTATACGAGTATCCGTTG 60.149 40.741 0.00 0.00 43.20 4.10
2250 2572 1.271379 ACGAGTATCCGTTGCTCAACA 59.729 47.619 12.54 0.00 40.17 3.33
2251 2573 1.920574 CGAGTATCCGTTGCTCAACAG 59.079 52.381 12.54 2.00 41.20 3.16
2256 2578 1.594293 CCGTTGCTCAACAGTCCGT 60.594 57.895 12.54 0.00 41.20 4.69
2267 2589 0.529119 ACAGTCCGTTGTGGTTCGTC 60.529 55.000 0.00 0.00 39.52 4.20
2270 2592 0.942884 GTCCGTTGTGGTTCGTCCTC 60.943 60.000 1.80 0.00 39.52 3.71
2271 2593 2.019951 CCGTTGTGGTTCGTCCTCG 61.020 63.158 1.80 0.00 37.07 4.63
2276 2598 1.154263 GTGGTTCGTCCTCGACTCG 60.154 63.158 0.00 0.00 46.03 4.18
2277 2599 2.330372 TGGTTCGTCCTCGACTCGG 61.330 63.158 0.00 0.00 46.03 4.63
2281 2603 0.247460 TTCGTCCTCGACTCGGTAGA 59.753 55.000 0.00 0.00 46.03 2.59
2282 2604 0.179116 TCGTCCTCGACTCGGTAGAG 60.179 60.000 0.00 7.03 41.35 2.43
2286 2705 5.301574 CGTCCTCGACTCGGTAGAGAAAC 62.302 56.522 13.11 10.34 46.94 2.78
2306 2725 2.223971 ACCGCGCATAGCTACAAATAGT 60.224 45.455 8.75 0.00 45.59 2.12
2334 2764 6.237901 ACATCTACTACAACTGGCATTTTCA 58.762 36.000 0.00 0.00 0.00 2.69
2375 2817 0.178873 TGGAGAAAGGTACTGCCCCT 60.179 55.000 0.00 0.00 40.86 4.79
2443 2888 9.309516 CCGAGCTAATAATTTTAGTGTCAAGTA 57.690 33.333 0.00 0.00 0.00 2.24
2470 2918 1.373570 CATCTTTCCCGAGAACAGGC 58.626 55.000 0.00 0.00 0.00 4.85
2531 2988 1.084370 ATCAGTAGCCGTCGCTTTGC 61.084 55.000 0.00 0.00 45.55 3.68
2532 2989 2.434359 AGTAGCCGTCGCTTTGCC 60.434 61.111 0.00 0.00 45.55 4.52
2606 3065 2.750948 GATAACTGTCACACGTGTGGT 58.249 47.619 39.88 29.44 45.65 4.16
2877 4050 6.658816 TGCCATGATATTTACACTGAAGTTGT 59.341 34.615 0.00 0.00 0.00 3.32
2889 4062 7.369803 ACACTGAAGTTGTCATGATATGTTC 57.630 36.000 0.00 3.21 35.07 3.18
3313 6788 6.399639 AAGCCGAAACCAAAAAGATTTCTA 57.600 33.333 0.00 0.00 31.47 2.10
3458 6977 2.988010 AATAGCGGCAGAATCTGTGA 57.012 45.000 12.29 0.00 33.43 3.58
3493 7012 4.403113 TGGATTTAGCTACACACCGACATA 59.597 41.667 0.00 0.00 0.00 2.29
3542 7061 4.281941 TGCATATAAAGCACCACACCAAAA 59.718 37.500 0.00 0.00 37.02 2.44
3563 7082 1.106351 ACAATCCGCTGGCACAACAA 61.106 50.000 0.00 0.00 38.70 2.83
3567 7086 0.036164 TCCGCTGGCACAACAATAGT 59.964 50.000 0.00 0.00 38.70 2.12
3568 7087 0.881118 CCGCTGGCACAACAATAGTT 59.119 50.000 0.00 0.00 38.70 2.24
3610 9021 7.336931 AGACTTTTGCCCCGCTATATTAATATG 59.663 37.037 16.72 8.76 0.00 1.78
3611 9022 7.172342 ACTTTTGCCCCGCTATATTAATATGA 58.828 34.615 16.72 2.40 0.00 2.15
3612 9023 7.834181 ACTTTTGCCCCGCTATATTAATATGAT 59.166 33.333 16.72 0.00 0.00 2.45
3615 9026 9.860650 TTTGCCCCGCTATATTAATATGATAAT 57.139 29.630 16.72 0.00 0.00 1.28
3751 10517 0.962356 CTGCGCCCACCAGAGAATTT 60.962 55.000 4.18 0.00 32.03 1.82
3777 10543 3.740832 CACGCTCTTATGCCATCGAATTA 59.259 43.478 0.00 0.00 0.00 1.40
3805 10571 3.299503 ACCAAGCAACACCTTCAAGAAT 58.700 40.909 0.00 0.00 0.00 2.40
3806 10572 4.469657 ACCAAGCAACACCTTCAAGAATA 58.530 39.130 0.00 0.00 0.00 1.75
3812 10578 4.261572 GCAACACCTTCAAGAATAACTGCA 60.262 41.667 0.00 0.00 0.00 4.41
3956 10736 1.520342 GCCGACCAGATCTGACAGC 60.520 63.158 24.62 16.26 0.00 4.40
3967 10751 1.266178 TCTGACAGCGATTTCTCCCA 58.734 50.000 0.00 0.00 0.00 4.37
3968 10752 1.833630 TCTGACAGCGATTTCTCCCAT 59.166 47.619 0.00 0.00 0.00 4.00
4018 10802 2.998097 GGCTCCACCATGCCTACA 59.002 61.111 0.00 0.00 45.26 2.74
4047 10831 1.066215 ACATTCGCCAGCATAGTCACA 60.066 47.619 0.00 0.00 0.00 3.58
4116 10901 2.752903 GACCAAAACGAAGCCACCATAT 59.247 45.455 0.00 0.00 0.00 1.78
4146 10931 2.003672 CAATACCGTAGCCACGTGC 58.996 57.895 10.91 5.91 46.96 5.34
4158 10943 3.542676 ACGTGCGAGGGGACAACA 61.543 61.111 0.00 0.00 33.50 3.33
4222 11009 2.847234 ACCAGGCCAACTGTCCGA 60.847 61.111 5.01 0.00 46.06 4.55
4224 11011 2.743718 CAGGCCAACTGTCCGACT 59.256 61.111 5.01 0.00 42.42 4.18
4236 11023 2.989253 CCGACTGGGCCCAAAACC 60.989 66.667 28.29 13.71 0.00 3.27
4246 11033 2.439519 CCAAAACCGGGCCGCTAT 60.440 61.111 23.20 4.86 0.00 2.97
4397 11193 1.980765 CCCATATCTAGGCTTGCAGGA 59.019 52.381 0.00 0.00 0.00 3.86
4398 11194 2.027377 CCCATATCTAGGCTTGCAGGAG 60.027 54.545 0.00 0.00 0.00 3.69
4454 11297 6.588719 TGTTTTTAATTGATCCACTCCAGG 57.411 37.500 0.00 0.00 0.00 4.45
4458 11301 7.696992 TTTTAATTGATCCACTCCAGGTTAC 57.303 36.000 0.00 0.00 0.00 2.50
4496 11339 8.690884 CCATTATTAAACCACCACACATAATGA 58.309 33.333 9.53 0.00 36.11 2.57
4538 11381 4.558226 TGAGGATGTTGCAAGTGATAGT 57.442 40.909 0.00 0.00 0.00 2.12
4558 11401 9.355916 TGATAGTCATCTAATATATTCCCTCCG 57.644 37.037 0.00 0.00 31.93 4.63
4559 11402 9.357161 GATAGTCATCTAATATATTCCCTCCGT 57.643 37.037 0.00 0.00 0.00 4.69
4560 11403 9.716556 ATAGTCATCTAATATATTCCCTCCGTT 57.283 33.333 0.00 0.00 0.00 4.44
4561 11404 8.068892 AGTCATCTAATATATTCCCTCCGTTC 57.931 38.462 0.00 0.00 0.00 3.95
4562 11405 7.896496 AGTCATCTAATATATTCCCTCCGTTCT 59.104 37.037 0.00 0.00 0.00 3.01
4563 11406 9.186837 GTCATCTAATATATTCCCTCCGTTCTA 57.813 37.037 0.00 0.00 0.00 2.10
4564 11407 9.763837 TCATCTAATATATTCCCTCCGTTCTAA 57.236 33.333 0.00 0.00 0.00 2.10
4573 11416 5.546621 TCCCTCCGTTCTAAAATAGATGG 57.453 43.478 0.00 0.00 34.22 3.51
4574 11417 4.065789 CCCTCCGTTCTAAAATAGATGGC 58.934 47.826 0.00 0.00 34.22 4.40
4575 11418 4.065789 CCTCCGTTCTAAAATAGATGGCC 58.934 47.826 0.00 0.00 34.22 5.36
4576 11419 4.065789 CTCCGTTCTAAAATAGATGGCCC 58.934 47.826 0.00 0.00 34.22 5.80
4577 11420 3.456644 TCCGTTCTAAAATAGATGGCCCA 59.543 43.478 0.00 0.00 34.22 5.36
4578 11421 4.080243 TCCGTTCTAAAATAGATGGCCCAA 60.080 41.667 0.00 0.00 34.22 4.12
4579 11422 4.827284 CCGTTCTAAAATAGATGGCCCAAT 59.173 41.667 0.00 0.00 34.22 3.16
4580 11423 5.301805 CCGTTCTAAAATAGATGGCCCAATT 59.698 40.000 0.00 0.00 34.22 2.32
4581 11424 6.183360 CCGTTCTAAAATAGATGGCCCAATTT 60.183 38.462 0.00 0.00 34.22 1.82
4582 11425 7.264947 CGTTCTAAAATAGATGGCCCAATTTT 58.735 34.615 0.00 9.63 36.04 1.82
4583 11426 7.222611 CGTTCTAAAATAGATGGCCCAATTTTG 59.777 37.037 12.72 5.55 34.37 2.44
4584 11427 7.495606 GTTCTAAAATAGATGGCCCAATTTTGG 59.504 37.037 12.72 10.54 40.26 3.28
4585 11428 7.401493 TTCTAAAATAGATGGCCCAATTTTGGA 59.599 33.333 11.81 11.81 41.79 3.53
4605 11448 9.685828 TTTTGGACTAACTTATTTTGAAATCGG 57.314 29.630 0.00 0.00 0.00 4.18
4606 11449 8.624367 TTGGACTAACTTATTTTGAAATCGGA 57.376 30.769 0.00 0.00 0.00 4.55
4607 11450 8.263940 TGGACTAACTTATTTTGAAATCGGAG 57.736 34.615 0.00 0.00 0.00 4.63
4608 11451 7.335924 TGGACTAACTTATTTTGAAATCGGAGG 59.664 37.037 0.00 0.00 0.00 4.30
4609 11452 7.201705 GGACTAACTTATTTTGAAATCGGAGGG 60.202 40.741 0.00 0.00 0.00 4.30
4610 11453 7.399634 ACTAACTTATTTTGAAATCGGAGGGA 58.600 34.615 0.00 0.00 0.00 4.20
4611 11454 6.759497 AACTTATTTTGAAATCGGAGGGAG 57.241 37.500 0.00 0.00 0.00 4.30
4612 11455 5.816682 ACTTATTTTGAAATCGGAGGGAGT 58.183 37.500 0.00 0.00 0.00 3.85
4613 11456 6.954232 ACTTATTTTGAAATCGGAGGGAGTA 58.046 36.000 0.00 0.00 0.00 2.59
4645 11488 1.655484 TCATGCCTCAACATGTAGCG 58.345 50.000 0.00 0.00 46.15 4.26
4656 11499 1.068125 ACATGTAGCGCGACACTAACA 60.068 47.619 25.75 10.88 30.52 2.41
4657 11500 1.989864 CATGTAGCGCGACACTAACAA 59.010 47.619 25.75 0.86 30.52 2.83
4658 11501 1.693467 TGTAGCGCGACACTAACAAG 58.307 50.000 19.85 0.00 0.00 3.16
4659 11502 1.001048 TGTAGCGCGACACTAACAAGT 60.001 47.619 19.85 0.00 0.00 3.16
4660 11503 2.226200 TGTAGCGCGACACTAACAAGTA 59.774 45.455 19.85 0.00 0.00 2.24
5393 12291 2.028484 TTCAGAGTTTCGCGGCGT 59.972 55.556 22.90 1.92 0.00 5.68
5600 12499 1.812571 CCCATAAGCATTATCACGGCC 59.187 52.381 0.00 0.00 39.78 6.13
5700 12617 1.663695 ATAAATTGACGGACGGCAGG 58.336 50.000 0.00 0.00 33.06 4.85
5721 12638 1.134580 CGCCTGGTCTGAATGTCATCT 60.135 52.381 0.00 0.00 0.00 2.90
5771 12688 1.609208 GCTATCCCATCGCCAATGTT 58.391 50.000 0.00 0.00 33.13 2.71
6041 12968 3.755628 GTGGCATGGTGGCTGCTG 61.756 66.667 0.00 0.00 44.10 4.41
6218 13145 1.142748 CTTCTTCCTCATCGGCGCT 59.857 57.895 7.64 0.00 0.00 5.92
6350 13277 0.038526 CGGCCGTGAACTACAACTCT 60.039 55.000 19.50 0.00 0.00 3.24
6392 13319 3.064820 TCTTCAACTTCTTTGTGTTCCGC 59.935 43.478 0.00 0.00 36.49 5.54
6617 13544 3.181496 GCCCAGTGTTCTAAGCTAAATGC 60.181 47.826 0.00 0.00 43.29 3.56
6621 13548 4.033358 CAGTGTTCTAAGCTAAATGCCTCG 59.967 45.833 0.00 0.00 44.23 4.63
6804 13731 8.551205 CGCATCATACAGTAAGATACACATTTT 58.449 33.333 0.00 0.00 0.00 1.82
6819 13746 4.355543 ACATTTTGTGACCGTATGCATC 57.644 40.909 0.19 0.00 0.00 3.91
6820 13747 3.181511 ACATTTTGTGACCGTATGCATCG 60.182 43.478 0.19 7.03 0.00 3.84
6821 13748 2.087501 TTTGTGACCGTATGCATCGT 57.912 45.000 0.19 0.00 0.00 3.73
6822 13749 2.087501 TTGTGACCGTATGCATCGTT 57.912 45.000 0.19 0.00 0.00 3.85
6823 13750 1.635844 TGTGACCGTATGCATCGTTC 58.364 50.000 0.19 5.82 0.00 3.95
6824 13751 1.203758 TGTGACCGTATGCATCGTTCT 59.796 47.619 0.19 0.00 0.00 3.01
6825 13752 1.588404 GTGACCGTATGCATCGTTCTG 59.412 52.381 0.19 0.00 0.00 3.02
6826 13753 1.474879 TGACCGTATGCATCGTTCTGA 59.525 47.619 0.19 0.00 0.00 3.27
6827 13754 2.100749 TGACCGTATGCATCGTTCTGAT 59.899 45.455 0.19 0.00 38.01 2.90
6839 13766 3.215151 TCGTTCTGATGTAGAGGCTAGG 58.785 50.000 0.00 0.00 36.61 3.02
6840 13767 2.294791 CGTTCTGATGTAGAGGCTAGGG 59.705 54.545 0.00 0.00 36.61 3.53
6841 13768 3.567397 GTTCTGATGTAGAGGCTAGGGA 58.433 50.000 0.00 0.00 36.61 4.20
6842 13769 3.517296 TCTGATGTAGAGGCTAGGGAG 57.483 52.381 0.00 0.00 0.00 4.30
6843 13770 2.786445 TCTGATGTAGAGGCTAGGGAGT 59.214 50.000 0.00 0.00 0.00 3.85
6844 13771 3.153919 CTGATGTAGAGGCTAGGGAGTC 58.846 54.545 0.00 0.00 0.00 3.36
6845 13772 2.158445 TGATGTAGAGGCTAGGGAGTCC 60.158 54.545 0.00 0.00 0.00 3.85
6846 13773 0.556747 TGTAGAGGCTAGGGAGTCCC 59.443 60.000 21.81 21.81 45.90 4.46
6860 13787 5.607939 GGGAGTCCCTTTTTGAAGAAAAA 57.392 39.130 22.04 0.00 41.34 1.94
6910 13837 6.796705 ACGACCAAACTAAAATAGAACTGG 57.203 37.500 0.00 0.00 0.00 4.00
7011 13944 7.494298 GGTGAAAGAAAAAGACAATTTAAGGCA 59.506 33.333 0.00 0.00 0.00 4.75
7043 13976 2.915738 AAGAGCCTACTTCACGTACG 57.084 50.000 15.01 15.01 0.00 3.67
7089 14022 0.457166 CGCTGAATGCACACCATTGG 60.457 55.000 0.00 0.00 44.02 3.16
7094 14027 0.757512 AATGCACACCATTGGTTGCA 59.242 45.000 30.26 30.26 45.62 4.08
7100 14033 4.002316 GCACACCATTGGTTGCATATTTT 58.998 39.130 25.23 0.00 38.55 1.82
7169 14102 6.949352 ATAAAAGACGATGCATTTCTCCAT 57.051 33.333 11.16 5.07 0.00 3.41
7172 14105 5.649782 AAGACGATGCATTTCTCCATTTT 57.350 34.783 11.16 0.00 0.00 1.82
7197 14153 2.714250 AGTATGTTCACCCCCACTTTCA 59.286 45.455 0.00 0.00 0.00 2.69
7207 14163 1.831736 CCCCACTTTCATCCGTCTACT 59.168 52.381 0.00 0.00 0.00 2.57
7219 14175 1.194098 CCGTCTACTATACGCGAGGTG 59.806 57.143 15.93 2.40 39.00 4.00
7223 14179 3.185391 GTCTACTATACGCGAGGTGGTAC 59.815 52.174 15.93 0.00 0.00 3.34
7228 14184 1.761449 TACGCGAGGTGGTACCAATA 58.239 50.000 18.31 0.00 41.95 1.90
7229 14185 0.896923 ACGCGAGGTGGTACCAATAA 59.103 50.000 18.31 0.00 41.95 1.40
7230 14186 1.483415 ACGCGAGGTGGTACCAATAAT 59.517 47.619 18.31 2.30 41.95 1.28
7231 14187 2.093341 ACGCGAGGTGGTACCAATAATT 60.093 45.455 18.31 0.00 41.95 1.40
7232 14188 2.542595 CGCGAGGTGGTACCAATAATTC 59.457 50.000 18.31 8.98 41.95 2.17
7233 14189 2.542595 GCGAGGTGGTACCAATAATTCG 59.457 50.000 18.31 20.11 41.95 3.34
7236 14192 5.350633 CGAGGTGGTACCAATAATTCGTTA 58.649 41.667 18.31 0.00 41.95 3.18
7237 14193 5.987347 CGAGGTGGTACCAATAATTCGTTAT 59.013 40.000 18.31 0.00 41.95 1.89
7238 14194 6.480981 CGAGGTGGTACCAATAATTCGTTATT 59.519 38.462 18.31 0.00 41.95 1.40
7239 14195 7.306983 CGAGGTGGTACCAATAATTCGTTATTC 60.307 40.741 18.31 0.00 41.95 1.75
7240 14196 7.340256 AGGTGGTACCAATAATTCGTTATTCA 58.660 34.615 18.31 0.00 41.95 2.57
7241 14197 7.830201 AGGTGGTACCAATAATTCGTTATTCAA 59.170 33.333 18.31 0.00 41.95 2.69
7242 14198 8.126700 GGTGGTACCAATAATTCGTTATTCAAG 58.873 37.037 18.31 0.00 38.42 3.02
7243 14199 8.671028 GTGGTACCAATAATTCGTTATTCAAGT 58.329 33.333 18.31 0.00 0.00 3.16
7250 14206 9.825972 CAATAATTCGTTATTCAAGTCACAGTT 57.174 29.630 0.00 0.00 0.00 3.16
7257 14213 7.694784 TCGTTATTCAAGTCACAGTTCAAAAAC 59.305 33.333 0.00 0.00 35.50 2.43
7334 14290 2.830104 CCGGCCCAGTAGTACAATTAC 58.170 52.381 2.52 0.00 0.00 1.89
7336 14292 3.181458 CCGGCCCAGTAGTACAATTACAT 60.181 47.826 2.52 0.00 0.00 2.29
7373 14329 4.478531 TGCCAGAGCAGATACCCA 57.521 55.556 0.00 0.00 46.52 4.51
7376 14332 1.340017 TGCCAGAGCAGATACCCAAAC 60.340 52.381 0.00 0.00 46.52 2.93
7403 14359 3.978687 ACATACGAGGCTATTTCTTCCG 58.021 45.455 0.00 0.00 0.00 4.30
7407 14363 1.471676 CGAGGCTATTTCTTCCGCTGT 60.472 52.381 0.00 0.00 0.00 4.40
7415 14371 0.534203 TTCTTCCGCTGTGACCAACC 60.534 55.000 0.00 0.00 0.00 3.77
7423 14379 2.215196 GCTGTGACCAACCGAACTAAA 58.785 47.619 0.00 0.00 0.00 1.85
7429 14385 4.756135 GTGACCAACCGAACTAAATACCAA 59.244 41.667 0.00 0.00 0.00 3.67
7454 14410 0.171903 CTCAATTTGAAGGCCCGCAG 59.828 55.000 0.00 0.00 0.00 5.18
7463 14419 2.438021 TGAAGGCCCGCAGAACTTATAT 59.562 45.455 0.00 0.00 0.00 0.86
7467 14423 1.264288 GCCCGCAGAACTTATATGTGC 59.736 52.381 0.00 0.00 34.03 4.57
7476 14432 6.620733 GCAGAACTTATATGTGCGTCAAACTT 60.621 38.462 0.00 0.00 0.00 2.66
7489 14445 1.885887 TCAAACTTGCATACACCAGCC 59.114 47.619 0.00 0.00 0.00 4.85
7511 14467 4.213482 CCCGTTGGTGTAAAAAGAAGAGAG 59.787 45.833 0.00 0.00 0.00 3.20
7514 14470 3.751518 TGGTGTAAAAAGAAGAGAGGGC 58.248 45.455 0.00 0.00 0.00 5.19
7515 14471 3.082548 GGTGTAAAAAGAAGAGAGGGCC 58.917 50.000 0.00 0.00 0.00 5.80
7517 14473 2.290071 TGTAAAAAGAAGAGAGGGCCCG 60.290 50.000 18.44 0.00 0.00 6.13
7531 14487 5.840081 AGAGGGCCCGTATATATTTAGTCT 58.160 41.667 18.44 5.75 0.00 3.24
7539 14495 7.147880 GCCCGTATATATTTAGTCTCACCTCAT 60.148 40.741 0.00 0.00 0.00 2.90
7540 14496 8.407064 CCCGTATATATTTAGTCTCACCTCATC 58.593 40.741 0.00 0.00 0.00 2.92
7549 14505 1.066858 TCTCACCTCATCCGCTTTCAC 60.067 52.381 0.00 0.00 0.00 3.18
7551 14507 0.798776 CACCTCATCCGCTTTCACAC 59.201 55.000 0.00 0.00 0.00 3.82
7556 14512 3.057315 CCTCATCCGCTTTCACACAATTT 60.057 43.478 0.00 0.00 0.00 1.82
7600 14556 5.466432 GAGTTGAACTCGGTAATTAAGCC 57.534 43.478 9.85 0.00 35.28 4.35
7601 14557 4.901868 AGTTGAACTCGGTAATTAAGCCA 58.098 39.130 0.00 0.00 0.00 4.75
7602 14558 5.310451 AGTTGAACTCGGTAATTAAGCCAA 58.690 37.500 0.00 0.00 0.00 4.52
7603 14559 5.180680 AGTTGAACTCGGTAATTAAGCCAAC 59.819 40.000 0.00 0.00 32.08 3.77
7604 14560 4.901868 TGAACTCGGTAATTAAGCCAACT 58.098 39.130 0.00 0.00 0.00 3.16
7605 14561 5.310451 TGAACTCGGTAATTAAGCCAACTT 58.690 37.500 0.00 0.00 40.07 2.66
7606 14562 6.465948 TGAACTCGGTAATTAAGCCAACTTA 58.534 36.000 0.00 0.00 37.33 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
301 320 1.134371 CCTTTCCCTCCCTGTTCGATC 60.134 57.143 0.00 0.00 0.00 3.69
345 366 3.133721 AGGTAATGCTCGCTTCATCTCTT 59.866 43.478 0.00 0.00 0.00 2.85
469 516 0.832135 ACCACTGGAAGAGAAGGCGA 60.832 55.000 0.71 0.00 37.43 5.54
470 517 0.035458 AACCACTGGAAGAGAAGGCG 59.965 55.000 0.71 0.00 37.43 5.52
471 518 2.155279 GAAACCACTGGAAGAGAAGGC 58.845 52.381 0.71 0.00 37.43 4.35
472 519 3.492102 TGAAACCACTGGAAGAGAAGG 57.508 47.619 0.71 0.00 37.43 3.46
473 520 4.274459 CACTTGAAACCACTGGAAGAGAAG 59.726 45.833 0.71 0.33 37.43 2.85
474 521 4.199310 CACTTGAAACCACTGGAAGAGAA 58.801 43.478 0.71 0.00 37.43 2.87
475 522 3.808728 CACTTGAAACCACTGGAAGAGA 58.191 45.455 0.71 0.00 37.43 3.10
476 523 2.291741 GCACTTGAAACCACTGGAAGAG 59.708 50.000 0.71 0.00 37.43 2.85
477 524 2.297701 GCACTTGAAACCACTGGAAGA 58.702 47.619 0.71 0.00 37.43 2.87
478 525 1.002468 CGCACTTGAAACCACTGGAAG 60.002 52.381 0.71 0.00 42.29 3.46
479 526 1.021202 CGCACTTGAAACCACTGGAA 58.979 50.000 0.71 0.00 0.00 3.53
480 527 0.179234 TCGCACTTGAAACCACTGGA 59.821 50.000 0.71 0.00 0.00 3.86
481 528 0.588252 CTCGCACTTGAAACCACTGG 59.412 55.000 0.00 0.00 0.00 4.00
513 560 1.290203 CTCACCTGCGACGCATTTAT 58.710 50.000 24.71 6.22 38.13 1.40
682 729 1.436195 GCGGTGTGCAAGTCAGTTCA 61.436 55.000 0.00 0.00 45.45 3.18
760 807 2.550978 CATCTTCGTTGGCTTCGGTAT 58.449 47.619 2.70 0.00 0.00 2.73
796 843 1.098712 ACGTGTGGGCGTTCAACATT 61.099 50.000 0.00 0.00 43.04 2.71
797 844 1.525077 ACGTGTGGGCGTTCAACAT 60.525 52.632 0.00 0.00 43.04 2.71
908 957 4.230657 GAGCAGCTACTATTATGTCCACG 58.769 47.826 0.00 0.00 0.00 4.94
931 980 2.991540 GTGCTGGGGTTTCAGGGC 60.992 66.667 0.00 0.00 35.43 5.19
983 1033 3.930848 GCCCATTGCTATGTACGTATACC 59.069 47.826 7.37 0.00 36.87 2.73
984 1034 3.611113 CGCCCATTGCTATGTACGTATAC 59.389 47.826 7.37 0.00 38.05 1.47
985 1035 3.506844 TCGCCCATTGCTATGTACGTATA 59.493 43.478 15.60 0.00 38.05 1.47
987 1037 1.682323 TCGCCCATTGCTATGTACGTA 59.318 47.619 15.60 0.00 38.05 3.57
988 1038 0.462375 TCGCCCATTGCTATGTACGT 59.538 50.000 15.60 0.00 38.05 3.57
991 1065 1.760029 TGTCTCGCCCATTGCTATGTA 59.240 47.619 7.37 0.00 38.05 2.29
1494 1571 0.984432 TGATGATGAGGAGCCAGGCA 60.984 55.000 15.80 0.00 0.00 4.75
1614 1730 4.023707 GCACCTAGATCCATTTGATTTCGG 60.024 45.833 0.00 0.00 32.41 4.30
1753 1885 2.681848 ACGAACTCGAGTAGTGGGTATG 59.318 50.000 20.39 0.90 43.02 2.39
1767 1903 0.511653 GAAGGCGACCAAACGAACTC 59.488 55.000 0.00 0.00 35.09 3.01
1815 1956 4.703645 ACGATGTGCGCTCTGTATATAT 57.296 40.909 9.73 0.00 46.04 0.86
1822 1963 0.025898 CATCAACGATGTGCGCTCTG 59.974 55.000 9.73 0.00 46.04 3.35
1830 1971 2.479566 ACTCAAGCCATCAACGATGT 57.520 45.000 3.47 0.00 38.28 3.06
1872 2182 5.774690 TCTCCAAAATGCAAAATCTAGTGGT 59.225 36.000 0.00 0.00 0.00 4.16
1906 2219 2.094026 GGCTTTAATGGGGAAGTGCTTG 60.094 50.000 0.00 0.00 0.00 4.01
1914 2234 2.292192 CCAAAGGAGGCTTTAATGGGGA 60.292 50.000 0.00 0.00 0.00 4.81
1925 2245 1.760029 TCCAAACAAACCAAAGGAGGC 59.240 47.619 0.00 0.00 0.00 4.70
1926 2246 3.733443 CTCCAAACAAACCAAAGGAGG 57.267 47.619 0.00 0.00 39.12 4.30
1927 2247 3.295973 TCCTCCAAACAAACCAAAGGAG 58.704 45.455 0.00 0.00 41.72 3.69
1928 2248 3.390175 TCCTCCAAACAAACCAAAGGA 57.610 42.857 0.00 0.00 0.00 3.36
1929 2249 4.687901 ATTCCTCCAAACAAACCAAAGG 57.312 40.909 0.00 0.00 0.00 3.11
1930 2250 6.374053 ACAAAATTCCTCCAAACAAACCAAAG 59.626 34.615 0.00 0.00 0.00 2.77
1931 2251 6.241645 ACAAAATTCCTCCAAACAAACCAAA 58.758 32.000 0.00 0.00 0.00 3.28
1932 2252 5.810095 ACAAAATTCCTCCAAACAAACCAA 58.190 33.333 0.00 0.00 0.00 3.67
1933 2253 5.428184 ACAAAATTCCTCCAAACAAACCA 57.572 34.783 0.00 0.00 0.00 3.67
1934 2254 5.989168 CCTACAAAATTCCTCCAAACAAACC 59.011 40.000 0.00 0.00 0.00 3.27
1935 2255 6.811954 TCCTACAAAATTCCTCCAAACAAAC 58.188 36.000 0.00 0.00 0.00 2.93
1936 2256 7.425224 TTCCTACAAAATTCCTCCAAACAAA 57.575 32.000 0.00 0.00 0.00 2.83
1937 2257 7.610580 ATTCCTACAAAATTCCTCCAAACAA 57.389 32.000 0.00 0.00 0.00 2.83
1938 2258 7.610580 AATTCCTACAAAATTCCTCCAAACA 57.389 32.000 0.00 0.00 0.00 2.83
1939 2259 8.902540 AAAATTCCTACAAAATTCCTCCAAAC 57.097 30.769 0.00 0.00 0.00 2.93
1941 2261 9.594936 TCTAAAATTCCTACAAAATTCCTCCAA 57.405 29.630 0.00 0.00 0.00 3.53
1942 2262 9.243105 CTCTAAAATTCCTACAAAATTCCTCCA 57.757 33.333 0.00 0.00 0.00 3.86
1943 2263 8.687242 CCTCTAAAATTCCTACAAAATTCCTCC 58.313 37.037 0.00 0.00 0.00 4.30
1944 2264 9.462606 TCCTCTAAAATTCCTACAAAATTCCTC 57.537 33.333 0.00 0.00 0.00 3.71
1945 2265 9.997172 ATCCTCTAAAATTCCTACAAAATTCCT 57.003 29.630 0.00 0.00 0.00 3.36
1975 2295 9.967346 GCTCTAAAGAAATTTTCCTACAAAGTT 57.033 29.630 5.52 0.00 0.00 2.66
1976 2296 8.577296 GGCTCTAAAGAAATTTTCCTACAAAGT 58.423 33.333 5.52 0.00 0.00 2.66
1977 2297 8.029522 GGGCTCTAAAGAAATTTTCCTACAAAG 58.970 37.037 5.52 0.00 0.00 2.77
1978 2298 7.728532 AGGGCTCTAAAGAAATTTTCCTACAAA 59.271 33.333 5.52 0.00 0.00 2.83
1979 2299 7.238710 AGGGCTCTAAAGAAATTTTCCTACAA 58.761 34.615 5.52 0.00 0.00 2.41
1980 2300 6.790319 AGGGCTCTAAAGAAATTTTCCTACA 58.210 36.000 5.52 0.00 0.00 2.74
1981 2301 7.704578 AAGGGCTCTAAAGAAATTTTCCTAC 57.295 36.000 5.52 0.00 0.00 3.18
1982 2302 7.947890 TCAAAGGGCTCTAAAGAAATTTTCCTA 59.052 33.333 5.52 0.00 0.00 2.94
1983 2303 6.782494 TCAAAGGGCTCTAAAGAAATTTTCCT 59.218 34.615 5.52 0.00 0.00 3.36
1984 2304 6.993079 TCAAAGGGCTCTAAAGAAATTTTCC 58.007 36.000 5.52 0.00 0.00 3.13
1985 2305 9.494271 AAATCAAAGGGCTCTAAAGAAATTTTC 57.506 29.630 0.66 0.66 0.00 2.29
1986 2306 9.276590 CAAATCAAAGGGCTCTAAAGAAATTTT 57.723 29.630 0.00 0.00 0.00 1.82
1987 2307 8.432013 ACAAATCAAAGGGCTCTAAAGAAATTT 58.568 29.630 0.00 0.00 0.00 1.82
1988 2308 7.966812 ACAAATCAAAGGGCTCTAAAGAAATT 58.033 30.769 0.00 0.00 0.00 1.82
1989 2309 7.544804 ACAAATCAAAGGGCTCTAAAGAAAT 57.455 32.000 0.00 0.00 0.00 2.17
1990 2310 6.976934 ACAAATCAAAGGGCTCTAAAGAAA 57.023 33.333 0.00 0.00 0.00 2.52
1991 2311 6.659242 CCTACAAATCAAAGGGCTCTAAAGAA 59.341 38.462 0.00 0.00 0.00 2.52
1992 2312 6.012858 TCCTACAAATCAAAGGGCTCTAAAGA 60.013 38.462 0.00 0.00 0.00 2.52
1993 2313 6.180472 TCCTACAAATCAAAGGGCTCTAAAG 58.820 40.000 0.00 0.00 0.00 1.85
1994 2314 6.134535 TCCTACAAATCAAAGGGCTCTAAA 57.865 37.500 0.00 0.00 0.00 1.85
1995 2315 5.250774 ACTCCTACAAATCAAAGGGCTCTAA 59.749 40.000 0.00 0.00 0.00 2.10
1996 2316 4.783227 ACTCCTACAAATCAAAGGGCTCTA 59.217 41.667 0.00 0.00 0.00 2.43
1997 2317 3.589288 ACTCCTACAAATCAAAGGGCTCT 59.411 43.478 0.00 0.00 0.00 4.09
1998 2318 3.691609 CACTCCTACAAATCAAAGGGCTC 59.308 47.826 0.00 0.00 0.00 4.70
1999 2319 3.562176 CCACTCCTACAAATCAAAGGGCT 60.562 47.826 0.00 0.00 0.00 5.19
2000 2320 2.755103 CCACTCCTACAAATCAAAGGGC 59.245 50.000 0.00 0.00 0.00 5.19
2001 2321 4.301072 TCCACTCCTACAAATCAAAGGG 57.699 45.455 0.00 0.00 0.00 3.95
2002 2322 6.414732 TGTATCCACTCCTACAAATCAAAGG 58.585 40.000 0.00 0.00 0.00 3.11
2003 2323 9.784531 ATATGTATCCACTCCTACAAATCAAAG 57.215 33.333 0.00 0.00 32.02 2.77
2006 2326 9.778741 GAAATATGTATCCACTCCTACAAATCA 57.221 33.333 0.00 0.00 32.02 2.57
2011 2331 9.601810 ACATAGAAATATGTATCCACTCCTACA 57.398 33.333 0.00 0.00 38.76 2.74
2014 2334 9.261035 CCTACATAGAAATATGTATCCACTCCT 57.739 37.037 8.20 0.00 40.77 3.69
2015 2335 9.256228 TCCTACATAGAAATATGTATCCACTCC 57.744 37.037 8.20 0.00 40.77 3.85
2132 2452 7.389884 GCCATGCATCTCAATTTCTATAGAGAA 59.610 37.037 0.00 0.00 40.19 2.87
2133 2453 6.877855 GCCATGCATCTCAATTTCTATAGAGA 59.122 38.462 0.00 0.00 40.96 3.10
2134 2454 6.653740 TGCCATGCATCTCAATTTCTATAGAG 59.346 38.462 0.00 0.00 31.71 2.43
2135 2455 6.536447 TGCCATGCATCTCAATTTCTATAGA 58.464 36.000 0.00 0.00 31.71 1.98
2136 2456 6.812879 TGCCATGCATCTCAATTTCTATAG 57.187 37.500 0.00 0.00 31.71 1.31
2151 2471 4.635699 ATAGAAGATGAGATGCCATGCA 57.364 40.909 0.00 0.00 44.86 3.96
2152 2472 7.627298 AATTATAGAAGATGAGATGCCATGC 57.373 36.000 0.00 0.00 0.00 4.06
2154 2474 9.240734 GGAAAATTATAGAAGATGAGATGCCAT 57.759 33.333 0.00 0.00 0.00 4.40
2155 2475 8.443176 AGGAAAATTATAGAAGATGAGATGCCA 58.557 33.333 0.00 0.00 0.00 4.92
2156 2476 8.860780 AGGAAAATTATAGAAGATGAGATGCC 57.139 34.615 0.00 0.00 0.00 4.40
2176 2496 9.322769 GGACAGGAATACTATAGGAATAGGAAA 57.677 37.037 4.43 0.00 39.63 3.13
2177 2497 8.689054 AGGACAGGAATACTATAGGAATAGGAA 58.311 37.037 4.43 0.00 39.63 3.36
2178 2498 8.245929 AGGACAGGAATACTATAGGAATAGGA 57.754 38.462 4.43 0.00 39.63 2.94
2183 2503 9.535170 CTTCATAGGACAGGAATACTATAGGAA 57.465 37.037 4.43 0.00 0.00 3.36
2184 2504 7.616150 GCTTCATAGGACAGGAATACTATAGGA 59.384 40.741 4.43 0.00 0.00 2.94
2185 2505 7.397476 TGCTTCATAGGACAGGAATACTATAGG 59.603 40.741 4.43 0.00 0.00 2.57
2186 2506 8.354711 TGCTTCATAGGACAGGAATACTATAG 57.645 38.462 0.00 0.00 0.00 1.31
2187 2507 8.721133 TTGCTTCATAGGACAGGAATACTATA 57.279 34.615 0.00 0.00 0.00 1.31
2188 2508 7.618019 TTGCTTCATAGGACAGGAATACTAT 57.382 36.000 0.00 0.00 0.00 2.12
2189 2509 7.344612 TCTTTGCTTCATAGGACAGGAATACTA 59.655 37.037 0.00 0.00 0.00 1.82
2190 2510 5.957771 TTGCTTCATAGGACAGGAATACT 57.042 39.130 0.00 0.00 0.00 2.12
2191 2511 6.349300 TCTTTGCTTCATAGGACAGGAATAC 58.651 40.000 0.00 0.00 0.00 1.89
2192 2512 6.560003 TCTTTGCTTCATAGGACAGGAATA 57.440 37.500 0.00 0.00 0.00 1.75
2193 2513 5.441718 TCTTTGCTTCATAGGACAGGAAT 57.558 39.130 0.00 0.00 0.00 3.01
2194 2514 4.908601 TCTTTGCTTCATAGGACAGGAA 57.091 40.909 0.00 0.00 0.00 3.36
2195 2515 4.323792 CCTTCTTTGCTTCATAGGACAGGA 60.324 45.833 0.00 0.00 0.00 3.86
2196 2516 3.944015 CCTTCTTTGCTTCATAGGACAGG 59.056 47.826 0.00 0.00 0.00 4.00
2197 2517 3.376546 GCCTTCTTTGCTTCATAGGACAG 59.623 47.826 0.00 0.00 0.00 3.51
2198 2518 3.347216 GCCTTCTTTGCTTCATAGGACA 58.653 45.455 0.00 0.00 0.00 4.02
2199 2519 2.685388 GGCCTTCTTTGCTTCATAGGAC 59.315 50.000 0.00 0.00 0.00 3.85
2200 2520 2.578021 AGGCCTTCTTTGCTTCATAGGA 59.422 45.455 0.00 0.00 0.00 2.94
2201 2521 3.010200 AGGCCTTCTTTGCTTCATAGG 57.990 47.619 0.00 0.00 0.00 2.57
2202 2522 6.705863 ATTTAGGCCTTCTTTGCTTCATAG 57.294 37.500 12.58 0.00 0.00 2.23
2203 2523 7.480760 AAATTTAGGCCTTCTTTGCTTCATA 57.519 32.000 12.58 0.00 0.00 2.15
2204 2524 6.364568 AAATTTAGGCCTTCTTTGCTTCAT 57.635 33.333 12.58 0.00 0.00 2.57
2205 2525 5.806654 AAATTTAGGCCTTCTTTGCTTCA 57.193 34.783 12.58 0.00 0.00 3.02
2206 2526 7.644157 CGTATAAATTTAGGCCTTCTTTGCTTC 59.356 37.037 12.58 0.00 0.00 3.86
2207 2527 7.338449 TCGTATAAATTTAGGCCTTCTTTGCTT 59.662 33.333 12.58 0.00 0.00 3.91
2208 2528 6.826741 TCGTATAAATTTAGGCCTTCTTTGCT 59.173 34.615 12.58 3.94 0.00 3.91
2209 2529 7.023197 TCGTATAAATTTAGGCCTTCTTTGC 57.977 36.000 12.58 3.56 0.00 3.68
2210 2530 8.209917 ACTCGTATAAATTTAGGCCTTCTTTG 57.790 34.615 12.58 0.00 0.00 2.77
2212 2532 9.708092 GATACTCGTATAAATTTAGGCCTTCTT 57.292 33.333 12.58 1.72 0.00 2.52
2213 2533 8.312564 GGATACTCGTATAAATTTAGGCCTTCT 58.687 37.037 12.58 0.00 0.00 2.85
2214 2534 7.275123 CGGATACTCGTATAAATTTAGGCCTTC 59.725 40.741 12.58 0.00 0.00 3.46
2215 2535 7.095270 CGGATACTCGTATAAATTTAGGCCTT 58.905 38.462 12.58 0.00 0.00 4.35
2216 2536 6.210185 ACGGATACTCGTATAAATTTAGGCCT 59.790 38.462 11.78 11.78 41.98 5.19
2217 2537 6.393171 ACGGATACTCGTATAAATTTAGGCC 58.607 40.000 3.94 0.00 41.98 5.19
2218 2538 7.620806 GCAACGGATACTCGTATAAATTTAGGC 60.621 40.741 3.94 0.00 43.07 3.93
2219 2539 7.597743 AGCAACGGATACTCGTATAAATTTAGG 59.402 37.037 3.94 0.00 43.07 2.69
2220 2540 8.516811 AGCAACGGATACTCGTATAAATTTAG 57.483 34.615 3.94 0.00 43.07 1.85
2221 2541 8.136800 TGAGCAACGGATACTCGTATAAATTTA 58.863 33.333 0.00 0.00 43.07 1.40
2222 2542 6.982141 TGAGCAACGGATACTCGTATAAATTT 59.018 34.615 0.00 0.00 43.07 1.82
2223 2543 6.509656 TGAGCAACGGATACTCGTATAAATT 58.490 36.000 0.00 0.00 43.07 1.82
2224 2544 6.080648 TGAGCAACGGATACTCGTATAAAT 57.919 37.500 0.00 0.00 43.07 1.40
2250 2572 1.068585 GGACGAACCACAACGGACT 59.931 57.895 0.00 0.00 38.63 3.85
2251 2573 0.942884 GAGGACGAACCACAACGGAC 60.943 60.000 0.00 0.00 42.04 4.79
2267 2589 1.401199 GGTTTCTCTACCGAGTCGAGG 59.599 57.143 15.64 0.00 38.45 4.63
2276 2598 1.488527 CTATGCGCGGTTTCTCTACC 58.511 55.000 8.83 0.00 34.72 3.18
2277 2599 0.853419 GCTATGCGCGGTTTCTCTAC 59.147 55.000 8.83 0.00 0.00 2.59
2281 2603 0.174845 TGTAGCTATGCGCGGTTTCT 59.825 50.000 8.83 0.00 45.59 2.52
2282 2604 1.003851 TTGTAGCTATGCGCGGTTTC 58.996 50.000 8.83 0.00 45.59 2.78
2286 2705 2.404215 ACTATTTGTAGCTATGCGCGG 58.596 47.619 8.83 0.00 45.59 6.46
2306 2725 7.655521 AATGCCAGTTGTAGTAGATGTACTA 57.344 36.000 5.67 5.67 40.23 1.82
2314 2740 4.759693 TGGTGAAAATGCCAGTTGTAGTAG 59.240 41.667 0.00 0.00 0.00 2.57
2325 2751 2.034053 TCGACAAACTGGTGAAAATGCC 59.966 45.455 0.00 0.00 0.00 4.40
2328 2758 5.299279 ACTTCATCGACAAACTGGTGAAAAT 59.701 36.000 0.00 0.00 0.00 1.82
2375 2817 5.881923 AGTGGTTCTTGTCACTTTACCTA 57.118 39.130 0.00 0.00 40.91 3.08
2443 2888 4.837093 TCTCGGGAAAGATGGTTAACAT 57.163 40.909 8.10 0.00 44.18 2.71
2482 2931 8.260818 ACTATGTGCACAACTTGATTCTAGTAT 58.739 33.333 25.72 3.49 0.00 2.12
2491 2941 8.040727 ACTGATAATACTATGTGCACAACTTGA 58.959 33.333 25.72 8.92 0.00 3.02
2531 2988 2.637382 AGCCAATTTTAACACCTTGGGG 59.363 45.455 0.00 0.00 38.84 4.96
2532 2989 3.306710 GGAGCCAATTTTAACACCTTGGG 60.307 47.826 0.00 0.00 38.84 4.12
2562 3021 2.546789 CGTCCTTAATTAATGACGGCCC 59.453 50.000 31.67 11.02 44.73 5.80
3031 4772 9.028284 ACAATTCCAGTACTTTGATCATGAAAT 57.972 29.630 11.14 0.00 0.00 2.17
3083 5245 6.607689 TGTGGCAATTTTAGTTTGTAGATCG 58.392 36.000 0.00 0.00 0.00 3.69
3313 6788 6.450545 CCACGTATGAATAGATGACATCAGT 58.549 40.000 17.57 2.70 0.00 3.41
3425 6944 2.480419 CCGCTATTTTCCATCATCGTCC 59.520 50.000 0.00 0.00 0.00 4.79
3458 6977 9.057089 GTGTAGCTAAATCCAATACTTATGCTT 57.943 33.333 0.00 0.00 0.00 3.91
3542 7061 1.094785 GTTGTGCCAGCGGATTGTAT 58.905 50.000 0.00 0.00 0.00 2.29
3568 7087 8.730680 GGCAAAAGTCTATTTCAAGAGAATGTA 58.269 33.333 0.00 0.00 32.89 2.29
3610 9021 7.148641 ACTCACTGTTGTATCGGATGATTATC 58.851 38.462 0.00 0.00 35.99 1.75
3611 9022 7.055667 ACTCACTGTTGTATCGGATGATTAT 57.944 36.000 0.00 0.00 35.99 1.28
3612 9023 6.465439 ACTCACTGTTGTATCGGATGATTA 57.535 37.500 0.00 0.00 35.99 1.75
3615 9026 4.219725 TGAACTCACTGTTGTATCGGATGA 59.780 41.667 0.00 0.00 39.30 2.92
3702 10467 6.055588 CGGGATACTGTACCTTTCATTGATT 58.944 40.000 0.00 0.00 38.54 2.57
3751 10517 0.541392 ATGGCATAAGAGCGTGGTGA 59.459 50.000 0.00 0.00 34.64 4.02
3777 10543 1.144913 AGGTGTTGCTTGGTACATGGT 59.855 47.619 0.00 0.00 39.30 3.55
3805 10571 0.993251 CGTCGTCGTCGTTGCAGTTA 60.993 55.000 3.67 0.00 38.33 2.24
3806 10572 2.290789 CGTCGTCGTCGTTGCAGTT 61.291 57.895 3.67 0.00 38.33 3.16
3812 10578 4.323843 AGCAGCGTCGTCGTCGTT 62.324 61.111 13.09 4.60 39.49 3.85
3948 10728 1.266178 TGGGAGAAATCGCTGTCAGA 58.734 50.000 3.32 0.00 0.00 3.27
3956 10736 1.131638 TGAGGGGATGGGAGAAATCG 58.868 55.000 0.00 0.00 0.00 3.34
3967 10751 1.767692 GTTGTGGGTGTGAGGGGAT 59.232 57.895 0.00 0.00 0.00 3.85
3968 10752 2.457323 GGTTGTGGGTGTGAGGGGA 61.457 63.158 0.00 0.00 0.00 4.81
4018 10802 2.676471 GGCGAATGTTGGTGGGCT 60.676 61.111 0.00 0.00 0.00 5.19
4047 10831 1.774254 TGAGACAATGGTGGTGTCCTT 59.226 47.619 1.08 0.00 45.39 3.36
4116 10901 2.214235 GGTATTGCCGGTCCCTGTA 58.786 57.895 1.90 0.00 0.00 2.74
4222 11009 4.614036 CCCGGTTTTGGGCCCAGT 62.614 66.667 26.87 0.00 43.70 4.00
4397 11193 3.417101 TCATTATTGTGAACCGTTGGCT 58.583 40.909 0.00 0.00 0.00 4.75
4398 11194 3.840890 TCATTATTGTGAACCGTTGGC 57.159 42.857 0.00 0.00 0.00 4.52
4458 11301 7.544217 GTGGTTTAATAATGGCTTGGTGTTTAG 59.456 37.037 0.00 0.00 0.00 1.85
4481 11324 9.787532 CTTACTAAAAATCATTATGTGTGGTGG 57.212 33.333 0.00 0.00 0.00 4.61
4496 11339 9.959721 TCCTCAATCTAGTTGCTTACTAAAAAT 57.040 29.630 0.00 0.00 38.84 1.82
4512 11355 5.164620 TCACTTGCAACATCCTCAATCTA 57.835 39.130 0.00 0.00 0.00 1.98
4518 11361 4.507710 TGACTATCACTTGCAACATCCTC 58.492 43.478 0.00 0.00 0.00 3.71
4538 11381 9.763837 TTAGAACGGAGGGAATATATTAGATGA 57.236 33.333 0.00 0.00 0.00 2.92
4550 11393 5.686650 GCCATCTATTTTAGAACGGAGGGAA 60.687 44.000 0.00 0.00 38.50 3.97
4551 11394 4.202326 GCCATCTATTTTAGAACGGAGGGA 60.202 45.833 0.00 0.00 38.50 4.20
4552 11395 4.065789 GCCATCTATTTTAGAACGGAGGG 58.934 47.826 7.28 0.00 38.50 4.30
4553 11396 4.065789 GGCCATCTATTTTAGAACGGAGG 58.934 47.826 0.00 0.00 38.50 4.30
4554 11397 4.065789 GGGCCATCTATTTTAGAACGGAG 58.934 47.826 4.39 0.00 38.50 4.63
4555 11398 3.456644 TGGGCCATCTATTTTAGAACGGA 59.543 43.478 0.00 0.00 38.50 4.69
4556 11399 3.815809 TGGGCCATCTATTTTAGAACGG 58.184 45.455 0.00 0.00 38.50 4.44
4557 11400 6.391227 AATTGGGCCATCTATTTTAGAACG 57.609 37.500 7.26 0.00 38.50 3.95
4558 11401 7.495606 CCAAAATTGGGCCATCTATTTTAGAAC 59.504 37.037 21.12 0.00 44.70 3.01
4559 11402 7.563906 CCAAAATTGGGCCATCTATTTTAGAA 58.436 34.615 21.12 0.00 44.70 2.10
4560 11403 7.123355 CCAAAATTGGGCCATCTATTTTAGA 57.877 36.000 21.12 0.00 44.70 2.10
4579 11422 9.685828 CCGATTTCAAAATAAGTTAGTCCAAAA 57.314 29.630 0.00 0.00 0.00 2.44
4580 11423 9.069082 TCCGATTTCAAAATAAGTTAGTCCAAA 57.931 29.630 0.00 0.00 0.00 3.28
4581 11424 8.624367 TCCGATTTCAAAATAAGTTAGTCCAA 57.376 30.769 0.00 0.00 0.00 3.53
4582 11425 7.335924 CCTCCGATTTCAAAATAAGTTAGTCCA 59.664 37.037 0.00 0.00 0.00 4.02
4583 11426 7.201705 CCCTCCGATTTCAAAATAAGTTAGTCC 60.202 40.741 0.00 0.00 0.00 3.85
4584 11427 7.551617 TCCCTCCGATTTCAAAATAAGTTAGTC 59.448 37.037 0.00 0.00 0.00 2.59
4585 11428 7.399634 TCCCTCCGATTTCAAAATAAGTTAGT 58.600 34.615 0.00 0.00 0.00 2.24
4586 11429 7.553044 ACTCCCTCCGATTTCAAAATAAGTTAG 59.447 37.037 0.00 0.00 0.00 2.34
4587 11430 7.399634 ACTCCCTCCGATTTCAAAATAAGTTA 58.600 34.615 0.00 0.00 0.00 2.24
4588 11431 6.246163 ACTCCCTCCGATTTCAAAATAAGTT 58.754 36.000 0.00 0.00 0.00 2.66
4589 11432 5.816682 ACTCCCTCCGATTTCAAAATAAGT 58.183 37.500 0.00 0.00 0.00 2.24
4590 11433 7.859325 TTACTCCCTCCGATTTCAAAATAAG 57.141 36.000 0.00 0.00 0.00 1.73
4591 11434 8.817092 AATTACTCCCTCCGATTTCAAAATAA 57.183 30.769 0.00 0.00 0.00 1.40
4593 11436 8.996651 ATAATTACTCCCTCCGATTTCAAAAT 57.003 30.769 0.00 0.00 0.00 1.82
4594 11437 8.050325 TGATAATTACTCCCTCCGATTTCAAAA 58.950 33.333 0.00 0.00 0.00 2.44
4595 11438 7.570132 TGATAATTACTCCCTCCGATTTCAAA 58.430 34.615 0.00 0.00 0.00 2.69
4596 11439 7.131907 TGATAATTACTCCCTCCGATTTCAA 57.868 36.000 0.00 0.00 0.00 2.69
4597 11440 6.740944 TGATAATTACTCCCTCCGATTTCA 57.259 37.500 0.00 0.00 0.00 2.69
4598 11441 7.386851 TCATGATAATTACTCCCTCCGATTTC 58.613 38.462 0.00 0.00 0.00 2.17
4599 11442 7.316393 TCATGATAATTACTCCCTCCGATTT 57.684 36.000 0.00 0.00 0.00 2.17
4600 11443 6.935240 TCATGATAATTACTCCCTCCGATT 57.065 37.500 0.00 0.00 0.00 3.34
4601 11444 6.935240 TTCATGATAATTACTCCCTCCGAT 57.065 37.500 0.00 0.00 0.00 4.18
4602 11445 6.740944 TTTCATGATAATTACTCCCTCCGA 57.259 37.500 0.00 0.00 0.00 4.55
4603 11446 7.161404 TGATTTCATGATAATTACTCCCTCCG 58.839 38.462 0.00 0.00 0.00 4.63
4636 11479 1.068125 TGTTAGTGTCGCGCTACATGT 60.068 47.619 18.34 11.05 0.00 3.21
4645 11488 4.511734 GTGTTGTTACTTGTTAGTGTCGC 58.488 43.478 0.00 0.00 35.78 5.19
4656 11499 4.681744 CAACAATGCAGGTGTTGTTACTT 58.318 39.130 26.58 3.31 46.97 2.24
4657 11500 4.305989 CAACAATGCAGGTGTTGTTACT 57.694 40.909 26.58 3.61 46.97 2.24
5281 12140 1.196808 CTGTTTGTCCATGTACGCACC 59.803 52.381 0.00 0.00 0.00 5.01
5393 12291 1.833630 GTGTGGATGTCAGGATCCTCA 59.166 52.381 12.69 8.63 42.36 3.86
5600 12499 1.101049 AACTTGCCTGGTTCGTGGTG 61.101 55.000 0.00 0.00 0.00 4.17
5670 12587 6.413818 CGTCCGTCAATTTATAAATGCCTTTC 59.586 38.462 11.42 0.89 0.00 2.62
5700 12617 0.745845 ATGACATTCAGACCAGGCGC 60.746 55.000 0.00 0.00 0.00 6.53
5721 12638 3.151710 CCCCATGGCGTACTCCGA 61.152 66.667 6.09 0.00 39.56 4.55
5771 12688 4.720046 TGTAACCATACACCTTGAAGCAA 58.280 39.130 0.00 0.00 37.11 3.91
5873 12790 3.219281 GGGCTCTTTTACCTGAACAACA 58.781 45.455 0.00 0.00 0.00 3.33
6041 12968 1.227002 GATGTTCTCGACGGAGCCC 60.227 63.158 0.00 0.00 40.26 5.19
6350 13277 4.373116 GTCCCGACGAGCAGCCAA 62.373 66.667 0.00 0.00 0.00 4.52
6392 13319 1.898154 CCACCACCTCTTCCGGTAG 59.102 63.158 0.00 0.00 34.94 3.18
6617 13544 0.250234 TTGAGGCATGGAAGACGAGG 59.750 55.000 0.00 0.00 0.00 4.63
6621 13548 2.686915 CCAATCTTGAGGCATGGAAGAC 59.313 50.000 0.00 0.00 32.82 3.01
6655 13582 3.670055 CACGAACACAATTGCAAAGGATC 59.330 43.478 1.71 0.00 0.00 3.36
6744 13671 8.952278 ACTATTTGCGGTTGAATAGTTTTGATA 58.048 29.630 3.59 0.00 43.12 2.15
6752 13679 5.682862 GCATGAACTATTTGCGGTTGAATAG 59.317 40.000 0.00 0.00 40.19 1.73
6804 13731 1.635844 GAACGATGCATACGGTCACA 58.364 50.000 23.01 0.00 45.18 3.58
6807 13734 2.203800 TCAGAACGATGCATACGGTC 57.796 50.000 21.43 21.43 46.03 4.79
6808 13735 2.473816 CATCAGAACGATGCATACGGT 58.526 47.619 18.34 13.97 44.95 4.83
6817 13744 3.823873 CCTAGCCTCTACATCAGAACGAT 59.176 47.826 0.00 0.00 31.12 3.73
6818 13745 3.215151 CCTAGCCTCTACATCAGAACGA 58.785 50.000 0.00 0.00 31.12 3.85
6819 13746 2.294791 CCCTAGCCTCTACATCAGAACG 59.705 54.545 0.00 0.00 31.12 3.95
6820 13747 3.567397 TCCCTAGCCTCTACATCAGAAC 58.433 50.000 0.00 0.00 31.12 3.01
6821 13748 3.205507 ACTCCCTAGCCTCTACATCAGAA 59.794 47.826 0.00 0.00 31.12 3.02
6822 13749 2.786445 ACTCCCTAGCCTCTACATCAGA 59.214 50.000 0.00 0.00 0.00 3.27
6823 13750 3.153919 GACTCCCTAGCCTCTACATCAG 58.846 54.545 0.00 0.00 0.00 2.90
6824 13751 2.158445 GGACTCCCTAGCCTCTACATCA 60.158 54.545 0.00 0.00 0.00 3.07
6825 13752 2.521126 GGACTCCCTAGCCTCTACATC 58.479 57.143 0.00 0.00 0.00 3.06
6826 13753 1.148236 GGGACTCCCTAGCCTCTACAT 59.852 57.143 6.90 0.00 41.34 2.29
6827 13754 0.556747 GGGACTCCCTAGCCTCTACA 59.443 60.000 6.90 0.00 41.34 2.74
6828 13755 3.443044 GGGACTCCCTAGCCTCTAC 57.557 63.158 6.90 0.00 41.34 2.59
6838 13765 5.607939 TTTTTCTTCAAAAAGGGACTCCC 57.392 39.130 5.90 5.90 38.49 4.30
6859 13786 7.989416 TCGGGAAATGTGTATCTTACTTTTT 57.011 32.000 0.00 0.00 0.00 1.94
6860 13787 7.881232 TCTTCGGGAAATGTGTATCTTACTTTT 59.119 33.333 0.00 0.00 0.00 2.27
6861 13788 7.391620 TCTTCGGGAAATGTGTATCTTACTTT 58.608 34.615 0.00 0.00 0.00 2.66
6862 13789 6.942976 TCTTCGGGAAATGTGTATCTTACTT 58.057 36.000 0.00 0.00 0.00 2.24
6863 13790 6.540438 TCTTCGGGAAATGTGTATCTTACT 57.460 37.500 0.00 0.00 0.00 2.24
6864 13791 6.237755 CGTTCTTCGGGAAATGTGTATCTTAC 60.238 42.308 0.00 0.00 35.51 2.34
6865 13792 5.808540 CGTTCTTCGGGAAATGTGTATCTTA 59.191 40.000 0.00 0.00 35.51 2.10
6866 13793 4.630069 CGTTCTTCGGGAAATGTGTATCTT 59.370 41.667 0.00 0.00 35.51 2.40
6867 13794 4.081862 TCGTTCTTCGGGAAATGTGTATCT 60.082 41.667 0.00 0.00 40.32 1.98
6868 13795 4.032558 GTCGTTCTTCGGGAAATGTGTATC 59.967 45.833 0.00 0.00 40.32 2.24
6869 13796 3.930848 GTCGTTCTTCGGGAAATGTGTAT 59.069 43.478 0.00 0.00 40.32 2.29
6870 13797 3.319755 GTCGTTCTTCGGGAAATGTGTA 58.680 45.455 0.00 0.00 40.32 2.90
6871 13798 2.140717 GTCGTTCTTCGGGAAATGTGT 58.859 47.619 0.00 0.00 40.32 3.72
6872 13799 1.463444 GGTCGTTCTTCGGGAAATGTG 59.537 52.381 0.00 0.00 40.32 3.21
6873 13800 1.071071 TGGTCGTTCTTCGGGAAATGT 59.929 47.619 0.00 0.00 40.32 2.71
6874 13801 1.803334 TGGTCGTTCTTCGGGAAATG 58.197 50.000 0.00 0.00 40.32 2.32
6875 13802 2.551032 GTTTGGTCGTTCTTCGGGAAAT 59.449 45.455 0.00 0.00 40.32 2.17
6876 13803 1.941975 GTTTGGTCGTTCTTCGGGAAA 59.058 47.619 0.00 0.00 40.32 3.13
6877 13804 1.139455 AGTTTGGTCGTTCTTCGGGAA 59.861 47.619 0.00 0.00 40.32 3.97
6878 13805 0.754472 AGTTTGGTCGTTCTTCGGGA 59.246 50.000 0.00 0.00 40.32 5.14
6879 13806 2.443887 TAGTTTGGTCGTTCTTCGGG 57.556 50.000 0.00 0.00 40.32 5.14
6880 13807 4.799419 TTTTAGTTTGGTCGTTCTTCGG 57.201 40.909 0.00 0.00 40.32 4.30
6881 13808 7.342318 TCTATTTTAGTTTGGTCGTTCTTCG 57.658 36.000 0.00 0.00 41.41 3.79
6882 13809 8.771766 AGTTCTATTTTAGTTTGGTCGTTCTTC 58.228 33.333 0.00 0.00 0.00 2.87
6920 13847 7.810282 TGTCAAGTTCTTTTCGTGAAAAATGAA 59.190 29.630 8.90 7.26 39.49 2.57
6921 13848 7.309177 TGTCAAGTTCTTTTCGTGAAAAATGA 58.691 30.769 8.90 1.97 39.49 2.57
6922 13849 7.504922 TGTCAAGTTCTTTTCGTGAAAAATG 57.495 32.000 8.90 0.00 39.49 2.32
6923 13850 7.973388 TCATGTCAAGTTCTTTTCGTGAAAAAT 59.027 29.630 8.90 0.00 39.49 1.82
6926 13853 6.429791 TCATGTCAAGTTCTTTTCGTGAAA 57.570 33.333 0.00 0.00 0.00 2.69
6927 13854 6.618287 ATCATGTCAAGTTCTTTTCGTGAA 57.382 33.333 0.00 0.00 0.00 3.18
6929 13856 6.912051 TCAAATCATGTCAAGTTCTTTTCGTG 59.088 34.615 0.00 0.00 0.00 4.35
6930 13857 6.912591 GTCAAATCATGTCAAGTTCTTTTCGT 59.087 34.615 0.00 0.00 0.00 3.85
6942 13874 7.770201 TGTCTTCTTTTTGTCAAATCATGTCA 58.230 30.769 0.00 0.00 0.00 3.58
6992 13924 5.629435 CGGTCTGCCTTAAATTGTCTTTTTC 59.371 40.000 0.00 0.00 0.00 2.29
7011 13944 2.683768 AGGCTCTTTATGGATCGGTCT 58.316 47.619 0.00 0.00 0.00 3.85
7043 13976 6.020995 CGTACAAAAATCGGACATTTTATGCC 60.021 38.462 0.00 0.00 31.67 4.40
7115 14048 9.237187 AGGTATAGATATAGATACATGGATGCG 57.763 37.037 0.00 0.00 0.00 4.73
7172 14105 5.327737 AAGTGGGGGTGAACATACTAAAA 57.672 39.130 0.00 0.00 0.00 1.52
7176 14109 2.714250 TGAAAGTGGGGGTGAACATACT 59.286 45.455 0.00 0.00 0.00 2.12
7179 14112 2.557452 GGATGAAAGTGGGGGTGAACAT 60.557 50.000 0.00 0.00 0.00 2.71
7190 14123 4.910456 GCGTATAGTAGACGGATGAAAGTG 59.090 45.833 18.17 0.00 40.66 3.16
7192 14125 4.084171 TCGCGTATAGTAGACGGATGAAAG 60.084 45.833 18.17 0.00 40.66 2.62
7197 14153 2.289320 ACCTCGCGTATAGTAGACGGAT 60.289 50.000 18.17 0.00 40.66 4.18
7207 14163 1.761449 TTGGTACCACCTCGCGTATA 58.239 50.000 16.04 0.00 39.58 1.47
7219 14175 8.885722 TGACTTGAATAACGAATTATTGGTACC 58.114 33.333 4.43 4.43 40.42 3.34
7223 14179 8.450964 ACTGTGACTTGAATAACGAATTATTGG 58.549 33.333 0.00 0.00 40.42 3.16
7228 14184 7.490962 TGAACTGTGACTTGAATAACGAATT 57.509 32.000 0.00 0.00 0.00 2.17
7229 14185 7.490962 TTGAACTGTGACTTGAATAACGAAT 57.509 32.000 0.00 0.00 0.00 3.34
7230 14186 6.912203 TTGAACTGTGACTTGAATAACGAA 57.088 33.333 0.00 0.00 0.00 3.85
7231 14187 6.912203 TTTGAACTGTGACTTGAATAACGA 57.088 33.333 0.00 0.00 0.00 3.85
7232 14188 7.696453 AGTTTTTGAACTGTGACTTGAATAACG 59.304 33.333 0.00 0.00 0.00 3.18
7233 14189 8.911247 AGTTTTTGAACTGTGACTTGAATAAC 57.089 30.769 0.00 0.00 0.00 1.89
7237 14193 9.352784 CATTTAGTTTTTGAACTGTGACTTGAA 57.647 29.630 2.25 0.00 34.37 2.69
7238 14194 8.735315 TCATTTAGTTTTTGAACTGTGACTTGA 58.265 29.630 2.25 0.00 34.37 3.02
7239 14195 8.909708 TCATTTAGTTTTTGAACTGTGACTTG 57.090 30.769 2.25 0.00 34.37 3.16
7240 14196 9.921637 TTTCATTTAGTTTTTGAACTGTGACTT 57.078 25.926 2.25 0.00 34.37 3.01
7241 14197 9.921637 TTTTCATTTAGTTTTTGAACTGTGACT 57.078 25.926 2.25 0.00 34.37 3.41
7257 14213 6.638468 GTCCAGCTGAACTGTTTTTCATTTAG 59.362 38.462 17.39 0.00 45.68 1.85
7261 14217 3.319122 GGTCCAGCTGAACTGTTTTTCAT 59.681 43.478 17.39 0.00 45.68 2.57
7268 14224 1.668294 CGAGGTCCAGCTGAACTGT 59.332 57.895 17.39 0.00 42.62 3.55
7299 14255 4.362476 CGGCTTTGTTGGGCTGCC 62.362 66.667 11.05 11.05 40.14 4.85
7403 14359 1.873698 TTAGTTCGGTTGGTCACAGC 58.126 50.000 0.00 0.00 0.00 4.40
7407 14363 4.620589 TGGTATTTAGTTCGGTTGGTCA 57.379 40.909 0.00 0.00 0.00 4.02
7415 14371 6.176975 TGAGCACAATTGGTATTTAGTTCG 57.823 37.500 10.83 0.00 32.05 3.95
7429 14385 2.027837 GGGCCTTCAAATTGAGCACAAT 60.028 45.455 0.84 3.28 46.99 2.71
7447 14403 1.264288 GCACATATAAGTTCTGCGGGC 59.736 52.381 0.00 0.00 0.00 6.13
7448 14404 1.526887 CGCACATATAAGTTCTGCGGG 59.473 52.381 2.48 0.00 45.38 6.13
7454 14410 5.508224 GCAAGTTTGACGCACATATAAGTTC 59.492 40.000 0.00 0.00 0.00 3.01
7463 14419 1.943340 TGTATGCAAGTTTGACGCACA 59.057 42.857 0.00 0.00 38.73 4.57
7467 14423 2.665519 GCTGGTGTATGCAAGTTTGACG 60.666 50.000 0.00 0.00 0.00 4.35
7469 14425 1.885887 GGCTGGTGTATGCAAGTTTGA 59.114 47.619 0.00 0.00 0.00 2.69
7476 14432 1.673993 CAACGGGCTGGTGTATGCA 60.674 57.895 2.31 0.00 0.00 3.96
7489 14445 4.213482 CCTCTCTTCTTTTTACACCAACGG 59.787 45.833 0.00 0.00 0.00 4.44
7500 14456 1.652947 TACGGGCCCTCTCTTCTTTT 58.347 50.000 22.43 0.00 0.00 2.27
7511 14467 5.394993 GGTGAGACTAAATATATACGGGCCC 60.395 48.000 13.57 13.57 0.00 5.80
7514 14470 7.698506 TGAGGTGAGACTAAATATATACGGG 57.301 40.000 0.00 0.00 0.00 5.28
7515 14471 8.407064 GGATGAGGTGAGACTAAATATATACGG 58.593 40.741 0.00 0.00 0.00 4.02
7517 14473 7.916450 GCGGATGAGGTGAGACTAAATATATAC 59.084 40.741 0.00 0.00 0.00 1.47
7531 14487 0.684535 TGTGAAAGCGGATGAGGTGA 59.315 50.000 0.00 0.00 0.00 4.02
7539 14495 2.034053 GGTCAAATTGTGTGAAAGCGGA 59.966 45.455 0.00 0.00 0.00 5.54
7540 14496 2.223688 TGGTCAAATTGTGTGAAAGCGG 60.224 45.455 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.