Multiple sequence alignment - TraesCS6B01G293100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G293100 chr6B 100.000 7489 0 0 1 7489 526726086 526718598 0.000000e+00 13830.0
1 TraesCS6B01G293100 chr6B 85.997 757 85 18 998 1743 526742218 526741472 0.000000e+00 791.0
2 TraesCS6B01G293100 chr6B 100.000 208 0 0 3370 3577 128891031 128890824 1.180000e-102 385.0
3 TraesCS6B01G293100 chr6D 96.331 3025 87 11 4403 7411 352354469 352357485 0.000000e+00 4950.0
4 TraesCS6B01G293100 chr6D 93.634 2105 82 21 608 2671 352351137 352353230 0.000000e+00 3097.0
5 TraesCS6B01G293100 chr6D 80.268 2017 327 55 4508 6503 352152115 352154081 0.000000e+00 1454.0
6 TraesCS6B01G293100 chr6D 86.569 752 65 19 998 1740 352149382 352150106 0.000000e+00 797.0
7 TraesCS6B01G293100 chr6D 93.360 497 23 7 2875 3370 352353241 352353728 0.000000e+00 726.0
8 TraesCS6B01G293100 chr6D 88.811 572 51 7 1 569 174296651 174296090 0.000000e+00 689.0
9 TraesCS6B01G293100 chr6D 95.349 172 6 1 4107 4278 352354181 352354350 9.570000e-69 272.0
10 TraesCS6B01G293100 chr6D 83.511 188 13 5 3573 3744 352353731 352353916 7.780000e-35 159.0
11 TraesCS6B01G293100 chr6D 97.436 39 1 0 3764 3802 352354020 352354058 4.850000e-07 67.6
12 TraesCS6B01G293100 chr6D 100.000 28 0 0 587 614 106456939 106456912 1.400000e-02 52.8
13 TraesCS6B01G293100 chr6A 94.400 3125 116 20 4403 7489 490496653 490493550 0.000000e+00 4747.0
14 TraesCS6B01G293100 chr6A 89.573 1592 105 32 1812 3370 490499318 490497755 0.000000e+00 1964.0
15 TraesCS6B01G293100 chr6A 93.509 1217 55 14 608 1810 490500563 490499357 0.000000e+00 1788.0
16 TraesCS6B01G293100 chr6A 81.597 1315 187 37 5217 6507 490837630 490836347 0.000000e+00 1037.0
17 TraesCS6B01G293100 chr6A 90.631 523 46 3 998 1520 490840957 490840438 0.000000e+00 691.0
18 TraesCS6B01G293100 chr6A 88.168 524 28 10 3764 4261 490497461 490496946 1.800000e-165 593.0
19 TraesCS6B01G293100 chr6A 90.683 161 13 2 1585 1743 490840367 490840207 5.890000e-51 213.0
20 TraesCS6B01G293100 chr6A 90.076 131 12 1 3614 3744 490497694 490497565 1.290000e-37 169.0
21 TraesCS6B01G293100 chr2A 86.667 2520 234 54 4410 6882 763367281 763369745 0.000000e+00 2699.0
22 TraesCS6B01G293100 chr2A 87.413 715 61 14 1060 1753 763364621 763365327 0.000000e+00 795.0
23 TraesCS6B01G293100 chr2A 80.526 190 35 2 5579 5767 694633024 694633212 2.180000e-30 145.0
24 TraesCS6B01G293100 chr2A 87.500 96 12 0 1631 1726 694631624 694631719 2.210000e-20 111.0
25 TraesCS6B01G293100 chr2B 86.962 2393 222 50 4523 6882 797625442 797627777 0.000000e+00 2608.0
26 TraesCS6B01G293100 chr2B 89.871 543 42 5 28 568 779265699 779265168 0.000000e+00 686.0
27 TraesCS6B01G293100 chr2B 92.964 469 33 0 1053 1521 797622792 797623260 0.000000e+00 684.0
28 TraesCS6B01G293100 chr2B 100.000 28 0 0 587 614 545237762 545237789 1.400000e-02 52.8
29 TraesCS6B01G293100 chrUn 84.759 1391 158 36 5226 6580 84016286 84014914 0.000000e+00 1345.0
30 TraesCS6B01G293100 chrUn 84.485 709 99 8 4420 5120 84017107 84016402 0.000000e+00 689.0
31 TraesCS6B01G293100 chr7D 84.449 1389 166 32 5226 6580 59733574 59732202 0.000000e+00 1323.0
32 TraesCS6B01G293100 chr7D 86.356 623 83 2 4499 5120 59734311 59733690 0.000000e+00 678.0
33 TraesCS6B01G293100 chr7D 88.266 571 55 8 1 569 470272738 470273298 0.000000e+00 673.0
34 TraesCS6B01G293100 chr7D 89.341 516 34 12 1013 1519 59738583 59738080 4.930000e-176 628.0
35 TraesCS6B01G293100 chr7D 94.444 108 6 0 1631 1738 59737966 59737859 4.650000e-37 167.0
36 TraesCS6B01G293100 chr4B 89.946 557 46 6 1 554 427274511 427275060 0.000000e+00 710.0
37 TraesCS6B01G293100 chr4D 89.180 573 49 7 1 568 16022938 16023502 0.000000e+00 702.0
38 TraesCS6B01G293100 chr4D 88.636 572 53 7 2 569 427612409 427611846 0.000000e+00 686.0
39 TraesCS6B01G293100 chr7A 84.344 709 107 3 4413 5119 63874515 63875221 0.000000e+00 691.0
40 TraesCS6B01G293100 chr7A 91.006 467 29 3 1066 1532 63872419 63872872 1.070000e-172 617.0
41 TraesCS6B01G293100 chr7A 99.038 208 2 0 3370 3577 60097246 60097039 2.550000e-99 374.0
42 TraesCS6B01G293100 chr1D 88.596 570 45 11 1 568 483684070 483684621 0.000000e+00 675.0
43 TraesCS6B01G293100 chr5D 88.266 571 54 6 1 569 230374327 230374886 0.000000e+00 671.0
44 TraesCS6B01G293100 chr7B 88.112 572 53 8 1 569 84707786 84707227 0.000000e+00 665.0
45 TraesCS6B01G293100 chr7B 99.519 208 1 0 3370 3577 716796887 716796680 5.480000e-101 379.0
46 TraesCS6B01G293100 chr5B 100.000 208 0 0 3370 3577 127820042 127819835 1.180000e-102 385.0
47 TraesCS6B01G293100 chr5B 100.000 208 0 0 3370 3577 713114010 713113803 1.180000e-102 385.0
48 TraesCS6B01G293100 chr5B 99.038 208 2 0 3370 3577 713094717 713094924 2.550000e-99 374.0
49 TraesCS6B01G293100 chr5B 100.000 28 0 0 584 611 11047819 11047846 1.400000e-02 52.8
50 TraesCS6B01G293100 chr1B 100.000 208 0 0 3370 3577 517084383 517084590 1.180000e-102 385.0
51 TraesCS6B01G293100 chr1B 100.000 208 0 0 3370 3577 638740252 638740045 1.180000e-102 385.0
52 TraesCS6B01G293100 chr1B 99.038 208 2 0 3370 3577 583549262 583549469 2.550000e-99 374.0
53 TraesCS6B01G293100 chr2D 85.859 99 14 0 1628 1726 554475783 554475881 1.030000e-18 106.0
54 TraesCS6B01G293100 chr3D 100.000 28 0 0 587 614 101428752 101428779 1.400000e-02 52.8
55 TraesCS6B01G293100 chr3D 100.000 28 0 0 587 614 476728356 476728383 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G293100 chr6B 526718598 526726086 7488 True 13830.000000 13830 100.000000 1 7489 1 chr6B.!!$R2 7488
1 TraesCS6B01G293100 chr6B 526741472 526742218 746 True 791.000000 791 85.997000 998 1743 1 chr6B.!!$R3 745
2 TraesCS6B01G293100 chr6D 352351137 352357485 6348 False 1545.266667 4950 93.270167 608 7411 6 chr6D.!!$F2 6803
3 TraesCS6B01G293100 chr6D 352149382 352154081 4699 False 1125.500000 1454 83.418500 998 6503 2 chr6D.!!$F1 5505
4 TraesCS6B01G293100 chr6D 174296090 174296651 561 True 689.000000 689 88.811000 1 569 1 chr6D.!!$R2 568
5 TraesCS6B01G293100 chr6A 490493550 490500563 7013 True 1852.200000 4747 91.145200 608 7489 5 chr6A.!!$R1 6881
6 TraesCS6B01G293100 chr6A 490836347 490840957 4610 True 647.000000 1037 87.637000 998 6507 3 chr6A.!!$R2 5509
7 TraesCS6B01G293100 chr2A 763364621 763369745 5124 False 1747.000000 2699 87.040000 1060 6882 2 chr2A.!!$F2 5822
8 TraesCS6B01G293100 chr2B 797622792 797627777 4985 False 1646.000000 2608 89.963000 1053 6882 2 chr2B.!!$F2 5829
9 TraesCS6B01G293100 chr2B 779265168 779265699 531 True 686.000000 686 89.871000 28 568 1 chr2B.!!$R1 540
10 TraesCS6B01G293100 chrUn 84014914 84017107 2193 True 1017.000000 1345 84.622000 4420 6580 2 chrUn.!!$R1 2160
11 TraesCS6B01G293100 chr7D 59732202 59738583 6381 True 699.000000 1323 88.647500 1013 6580 4 chr7D.!!$R1 5567
12 TraesCS6B01G293100 chr7D 470272738 470273298 560 False 673.000000 673 88.266000 1 569 1 chr7D.!!$F1 568
13 TraesCS6B01G293100 chr4B 427274511 427275060 549 False 710.000000 710 89.946000 1 554 1 chr4B.!!$F1 553
14 TraesCS6B01G293100 chr4D 16022938 16023502 564 False 702.000000 702 89.180000 1 568 1 chr4D.!!$F1 567
15 TraesCS6B01G293100 chr4D 427611846 427612409 563 True 686.000000 686 88.636000 2 569 1 chr4D.!!$R1 567
16 TraesCS6B01G293100 chr7A 63872419 63875221 2802 False 654.000000 691 87.675000 1066 5119 2 chr7A.!!$F1 4053
17 TraesCS6B01G293100 chr1D 483684070 483684621 551 False 675.000000 675 88.596000 1 568 1 chr1D.!!$F1 567
18 TraesCS6B01G293100 chr5D 230374327 230374886 559 False 671.000000 671 88.266000 1 569 1 chr5D.!!$F1 568
19 TraesCS6B01G293100 chr7B 84707227 84707786 559 True 665.000000 665 88.112000 1 569 1 chr7B.!!$R1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 591 0.036164 TAGTGCAATCTGTGGGCGTT 59.964 50.0 0.0 0.0 0.00 4.84 F
575 592 0.036164 AGTGCAATCTGTGGGCGTTA 59.964 50.0 0.0 0.0 0.00 3.18 F
581 598 0.530650 ATCTGTGGGCGTTATCAGCG 60.531 55.0 0.0 0.0 35.00 5.18 F
2672 3567 0.252467 ACTCTCCTCCACTCCAAGGG 60.252 60.0 0.0 0.0 33.21 3.95 F
3465 6358 0.036010 CCGAACAGGGAGCAGTCAAT 60.036 55.0 0.0 0.0 35.97 2.57 F
3972 7990 0.039074 GTCGCCGTATGATGGAGGAG 60.039 60.0 0.0 0.0 0.00 3.69 F
4366 9739 0.108424 GAGACGCCAGCTCTTCATGT 60.108 55.0 0.0 0.0 0.00 3.21 F
4867 10426 0.179043 TCCTTTACGTGCTTGTGCCA 60.179 50.0 0.0 0.0 38.71 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 3314 1.401905 GCTCGGAAAGGCCAAACATAG 59.598 52.381 5.01 0.00 35.94 2.23 R
2623 3516 0.808453 CACCCATAACCTACCACGCG 60.808 60.000 3.53 3.53 0.00 6.01 R
2700 3596 3.997021 GGCACTACGATCATATTTCCCTG 59.003 47.826 0.00 0.00 0.00 4.45 R
3957 7975 0.034059 GCCACTCCTCCATCATACGG 59.966 60.000 0.00 0.00 0.00 4.02 R
5378 10973 0.035915 GGAGCTGAACCTGGTCCTTC 60.036 60.000 0.00 0.00 43.40 3.46 R
5399 10994 2.121506 AAGAGGAGGCCCCACCAA 60.122 61.111 12.24 0.00 43.14 3.67 R
6407 12044 1.190833 CCAGAGGACAGTGCTCACCT 61.191 60.000 22.86 0.81 37.29 4.00 R
6588 12242 2.564947 GCTCTCTCTCTTTTGGTGGAGA 59.435 50.000 0.00 0.00 37.12 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 67 7.753309 TGCCATTATGTTTACACTGTAGTTT 57.247 32.000 0.00 0.00 0.00 2.66
77 82 7.988599 ACACTGTAGTTTCCATAGTGTTTACAA 59.011 33.333 0.00 0.00 46.96 2.41
78 83 8.280497 CACTGTAGTTTCCATAGTGTTTACAAC 58.720 37.037 0.00 0.00 35.30 3.32
90 95 6.458232 AGTGTTTACAACAAAGTTGCCATA 57.542 33.333 9.60 0.00 44.16 2.74
451 467 0.103208 AAGATCTCGTCGCCATGGAC 59.897 55.000 18.40 4.45 0.00 4.02
464 480 4.110036 GCCATGGACTTAATGGTGAAAC 57.890 45.455 18.40 0.00 45.46 2.78
546 563 4.465632 AAGATTGTCACATGCATGCATT 57.534 36.364 30.32 18.23 33.90 3.56
549 566 1.166989 TGTCACATGCATGCATTCGT 58.833 45.000 30.32 22.39 33.90 3.85
556 573 1.433534 TGCATGCATTCGTTGACGTA 58.566 45.000 18.46 0.00 40.80 3.57
570 587 3.532896 ACGTAGTGCAATCTGTGGG 57.467 52.632 0.00 0.00 42.51 4.61
571 588 0.673644 ACGTAGTGCAATCTGTGGGC 60.674 55.000 0.00 0.00 42.51 5.36
572 589 1.695893 CGTAGTGCAATCTGTGGGCG 61.696 60.000 0.00 0.00 0.00 6.13
573 590 0.673644 GTAGTGCAATCTGTGGGCGT 60.674 55.000 0.00 0.00 0.00 5.68
574 591 0.036164 TAGTGCAATCTGTGGGCGTT 59.964 50.000 0.00 0.00 0.00 4.84
575 592 0.036164 AGTGCAATCTGTGGGCGTTA 59.964 50.000 0.00 0.00 0.00 3.18
576 593 1.094785 GTGCAATCTGTGGGCGTTAT 58.905 50.000 0.00 0.00 0.00 1.89
577 594 1.064060 GTGCAATCTGTGGGCGTTATC 59.936 52.381 0.00 0.00 0.00 1.75
578 595 1.339535 TGCAATCTGTGGGCGTTATCA 60.340 47.619 0.00 0.00 0.00 2.15
579 596 1.331756 GCAATCTGTGGGCGTTATCAG 59.668 52.381 0.00 0.00 0.00 2.90
580 597 1.331756 CAATCTGTGGGCGTTATCAGC 59.668 52.381 0.00 0.00 0.00 4.26
581 598 0.530650 ATCTGTGGGCGTTATCAGCG 60.531 55.000 0.00 0.00 35.00 5.18
582 599 1.447838 CTGTGGGCGTTATCAGCGT 60.448 57.895 0.00 0.00 35.00 5.07
583 600 1.421410 CTGTGGGCGTTATCAGCGTC 61.421 60.000 0.00 0.00 35.00 5.19
586 603 4.195308 GGCGTTATCAGCGTCCAA 57.805 55.556 0.00 0.00 35.00 3.53
587 604 1.713830 GGCGTTATCAGCGTCCAAC 59.286 57.895 0.00 0.00 35.00 3.77
588 605 0.739813 GGCGTTATCAGCGTCCAACT 60.740 55.000 0.00 0.00 35.00 3.16
589 606 1.470285 GGCGTTATCAGCGTCCAACTA 60.470 52.381 0.00 0.00 35.00 2.24
590 607 2.264813 GCGTTATCAGCGTCCAACTAA 58.735 47.619 0.00 0.00 0.00 2.24
591 608 2.669434 GCGTTATCAGCGTCCAACTAAA 59.331 45.455 0.00 0.00 0.00 1.85
592 609 3.123959 GCGTTATCAGCGTCCAACTAAAA 59.876 43.478 0.00 0.00 0.00 1.52
593 610 4.377635 GCGTTATCAGCGTCCAACTAAAAA 60.378 41.667 0.00 0.00 0.00 1.94
594 611 5.313623 CGTTATCAGCGTCCAACTAAAAAG 58.686 41.667 0.00 0.00 0.00 2.27
595 612 5.119588 CGTTATCAGCGTCCAACTAAAAAGA 59.880 40.000 0.00 0.00 0.00 2.52
596 613 6.347079 CGTTATCAGCGTCCAACTAAAAAGAA 60.347 38.462 0.00 0.00 0.00 2.52
597 614 7.357303 GTTATCAGCGTCCAACTAAAAAGAAA 58.643 34.615 0.00 0.00 0.00 2.52
598 615 5.164606 TCAGCGTCCAACTAAAAAGAAAC 57.835 39.130 0.00 0.00 0.00 2.78
599 616 3.966218 CAGCGTCCAACTAAAAAGAAACG 59.034 43.478 0.00 0.00 0.00 3.60
600 617 3.002965 AGCGTCCAACTAAAAAGAAACGG 59.997 43.478 0.00 0.00 0.00 4.44
601 618 3.002553 GCGTCCAACTAAAAAGAAACGGA 59.997 43.478 0.00 0.00 0.00 4.69
602 619 4.769215 CGTCCAACTAAAAAGAAACGGAG 58.231 43.478 0.00 0.00 0.00 4.63
603 620 4.319261 CGTCCAACTAAAAAGAAACGGAGG 60.319 45.833 0.00 0.00 0.00 4.30
604 621 4.023450 GTCCAACTAAAAAGAAACGGAGGG 60.023 45.833 0.00 0.00 0.00 4.30
605 622 4.139038 CCAACTAAAAAGAAACGGAGGGA 58.861 43.478 0.00 0.00 0.00 4.20
606 623 4.215613 CCAACTAAAAAGAAACGGAGGGAG 59.784 45.833 0.00 0.00 0.00 4.30
638 655 9.621629 CTCTCGATTATCTGGGTATAAGTATCT 57.378 37.037 0.00 0.00 0.00 1.98
647 664 7.713750 TCTGGGTATAAGTATCTTGAACGAAG 58.286 38.462 0.00 0.00 0.00 3.79
665 682 8.840321 TGAACGAAGAAGATTTGAAAAGAAGAT 58.160 29.630 0.00 0.00 0.00 2.40
667 684 9.670719 AACGAAGAAGATTTGAAAAGAAGATTC 57.329 29.630 0.00 0.00 0.00 2.52
669 686 9.111702 CGAAGAAGATTTGAAAAGAAGATTCAC 57.888 33.333 0.00 0.00 36.57 3.18
670 687 9.111702 GAAGAAGATTTGAAAAGAAGATTCACG 57.888 33.333 0.00 0.00 36.57 4.35
683 703 7.035840 AGAAGATTCACGGTACATATACGTT 57.964 36.000 0.00 0.00 39.02 3.99
710 730 3.777106 ACAGCAAGATTCCTGTCTGAA 57.223 42.857 11.29 0.00 37.77 3.02
713 733 5.075493 ACAGCAAGATTCCTGTCTGAATTT 58.925 37.500 11.29 0.00 37.77 1.82
919 943 2.045926 CAAAGCCACCTCCCCTCG 60.046 66.667 0.00 0.00 0.00 4.63
954 979 1.801913 CAGAGCACGCGTAGTCACC 60.802 63.158 13.44 0.00 0.00 4.02
1347 1381 1.920835 GGAGTGGAGCCTCAACCCT 60.921 63.158 0.00 0.00 32.91 4.34
1607 1648 5.133941 TGCTACTCTATCCGATTTCTCACT 58.866 41.667 0.00 0.00 0.00 3.41
1825 2131 2.828549 CCGGGTTGGCATGCTACC 60.829 66.667 25.18 25.18 0.00 3.18
2282 2807 4.960938 TCCTCTTGATTATCATTGTCCCG 58.039 43.478 0.00 0.00 0.00 5.14
2322 2866 2.230660 CAGAAAGAAAGACCCCACCAC 58.769 52.381 0.00 0.00 0.00 4.16
2372 2916 1.565759 TGGTGGATGGATAAGCTGCTT 59.434 47.619 19.93 19.93 0.00 3.91
2395 2939 1.468054 GCTGCTGCTGATTTAAACCCG 60.468 52.381 10.92 0.00 36.03 5.28
2452 3306 5.766150 AAAACATAGTGCTTAGTTGTGCA 57.234 34.783 0.00 0.00 36.79 4.57
2588 3474 5.019785 ACTTTGTTAGGCGTTATCTAGGG 57.980 43.478 0.00 0.00 0.00 3.53
2623 3516 1.675641 ACGCATGGGTGGAAAGCTC 60.676 57.895 15.49 0.00 0.00 4.09
2672 3567 0.252467 ACTCTCCTCCACTCCAAGGG 60.252 60.000 0.00 0.00 33.21 3.95
2682 3577 4.662278 TCCACTCCAAGGGTTTATTTGAG 58.338 43.478 0.00 0.00 0.00 3.02
2765 3661 5.671493 TCCAATTATCGAAGGGTCTCTTTC 58.329 41.667 0.00 0.00 35.50 2.62
2777 3673 7.459795 AAGGGTCTCTTTCATTCAAAAGATC 57.540 36.000 0.00 0.00 42.68 2.75
2803 3699 9.387123 CTTCAAAGAAATTTTAGAGGAACTTCG 57.613 33.333 0.00 0.00 41.55 3.79
2861 3757 9.554724 GATTTGTATGATCGTAACACAAACAAT 57.445 29.630 13.96 2.69 40.67 2.71
2922 3829 3.764434 GGAAATTTCCTCCCTCTCAAACC 59.236 47.826 26.94 0.00 44.11 3.27
2924 3831 4.308526 AATTTCCTCCCTCTCAAACCTC 57.691 45.455 0.00 0.00 0.00 3.85
2926 3833 2.649742 TCCTCCCTCTCAAACCTCAT 57.350 50.000 0.00 0.00 0.00 2.90
3071 4327 7.437862 GTGAATCACAAATGCCACTAAGAAAAA 59.562 33.333 8.74 0.00 34.08 1.94
3176 4519 1.153369 CCTACAGGCCACATCACCG 60.153 63.158 5.01 0.00 0.00 4.94
3314 6207 0.752658 CACACCCAGACAGACAGACA 59.247 55.000 0.00 0.00 0.00 3.41
3315 6208 1.043816 ACACCCAGACAGACAGACAG 58.956 55.000 0.00 0.00 0.00 3.51
3316 6209 1.332195 CACCCAGACAGACAGACAGA 58.668 55.000 0.00 0.00 0.00 3.41
3321 6214 3.360867 CCAGACAGACAGACAGATACCT 58.639 50.000 0.00 0.00 0.00 3.08
3325 6218 5.126869 CAGACAGACAGACAGATACCTGAAT 59.873 44.000 0.00 0.00 43.02 2.57
3379 6272 4.431035 GCGAGCCTATAACGCCAA 57.569 55.556 0.00 0.00 45.35 4.52
3380 6273 1.932277 GCGAGCCTATAACGCCAAC 59.068 57.895 0.00 0.00 45.35 3.77
3381 6274 1.818221 GCGAGCCTATAACGCCAACG 61.818 60.000 0.00 0.00 45.35 4.10
3382 6275 1.818221 CGAGCCTATAACGCCAACGC 61.818 60.000 0.00 0.00 45.53 4.84
3383 6276 1.496403 GAGCCTATAACGCCAACGCC 61.496 60.000 0.00 0.00 45.53 5.68
3384 6277 1.523032 GCCTATAACGCCAACGCCT 60.523 57.895 0.00 0.00 45.53 5.52
3385 6278 1.772063 GCCTATAACGCCAACGCCTG 61.772 60.000 0.00 0.00 45.53 4.85
3386 6279 0.179094 CCTATAACGCCAACGCCTGA 60.179 55.000 0.00 0.00 45.53 3.86
3387 6280 1.209128 CTATAACGCCAACGCCTGAG 58.791 55.000 0.00 0.00 45.53 3.35
3388 6281 0.808453 TATAACGCCAACGCCTGAGC 60.808 55.000 0.00 0.00 45.53 4.26
3404 6297 4.811761 GCGAATTGCCGGCGTCAC 62.812 66.667 23.90 12.48 37.76 3.67
3405 6298 3.418913 CGAATTGCCGGCGTCACA 61.419 61.111 23.90 0.00 0.00 3.58
3406 6299 2.950673 GAATTGCCGGCGTCACAA 59.049 55.556 23.90 10.67 0.00 3.33
3407 6300 1.506262 GAATTGCCGGCGTCACAAT 59.494 52.632 23.90 12.78 35.59 2.71
3408 6301 0.730265 GAATTGCCGGCGTCACAATA 59.270 50.000 23.90 0.00 33.01 1.90
3409 6302 0.732571 AATTGCCGGCGTCACAATAG 59.267 50.000 23.90 0.00 33.01 1.73
3410 6303 0.392461 ATTGCCGGCGTCACAATAGT 60.392 50.000 23.90 0.00 32.42 2.12
3411 6304 0.604243 TTGCCGGCGTCACAATAGTT 60.604 50.000 23.90 0.00 0.00 2.24
3412 6305 0.604243 TGCCGGCGTCACAATAGTTT 60.604 50.000 23.90 0.00 0.00 2.66
3413 6306 0.519961 GCCGGCGTCACAATAGTTTT 59.480 50.000 12.58 0.00 0.00 2.43
3414 6307 1.733360 GCCGGCGTCACAATAGTTTTA 59.267 47.619 12.58 0.00 0.00 1.52
3415 6308 2.475022 GCCGGCGTCACAATAGTTTTAC 60.475 50.000 12.58 0.00 0.00 2.01
3416 6309 2.737783 CCGGCGTCACAATAGTTTTACA 59.262 45.455 6.01 0.00 0.00 2.41
3417 6310 3.186817 CCGGCGTCACAATAGTTTTACAA 59.813 43.478 6.01 0.00 0.00 2.41
3418 6311 4.319622 CCGGCGTCACAATAGTTTTACAAA 60.320 41.667 6.01 0.00 0.00 2.83
3419 6312 5.387279 CGGCGTCACAATAGTTTTACAAAT 58.613 37.500 0.00 0.00 0.00 2.32
3420 6313 6.402334 CCGGCGTCACAATAGTTTTACAAATA 60.402 38.462 6.01 0.00 0.00 1.40
3421 6314 6.681178 CGGCGTCACAATAGTTTTACAAATAG 59.319 38.462 0.00 0.00 0.00 1.73
3422 6315 7.412129 CGGCGTCACAATAGTTTTACAAATAGA 60.412 37.037 0.00 0.00 0.00 1.98
3423 6316 8.231837 GGCGTCACAATAGTTTTACAAATAGAA 58.768 33.333 0.00 0.00 0.00 2.10
3424 6317 9.262472 GCGTCACAATAGTTTTACAAATAGAAG 57.738 33.333 0.00 0.00 0.00 2.85
3438 6331 6.773976 CAAATAGAAGAGTATTTGGGCCAA 57.226 37.500 16.66 16.66 42.79 4.52
3439 6332 7.169158 CAAATAGAAGAGTATTTGGGCCAAA 57.831 36.000 32.12 32.12 42.79 3.28
3440 6333 7.610865 CAAATAGAAGAGTATTTGGGCCAAAA 58.389 34.615 33.40 20.05 42.79 2.44
3441 6334 7.978099 AATAGAAGAGTATTTGGGCCAAAAT 57.022 32.000 33.40 21.85 36.90 1.82
3442 6335 5.665916 AGAAGAGTATTTGGGCCAAAATG 57.334 39.130 33.40 0.00 36.90 2.32
3443 6336 5.332743 AGAAGAGTATTTGGGCCAAAATGA 58.667 37.500 33.40 19.52 36.90 2.57
3444 6337 5.420104 AGAAGAGTATTTGGGCCAAAATGAG 59.580 40.000 33.40 0.00 36.90 2.90
3445 6338 4.677182 AGAGTATTTGGGCCAAAATGAGT 58.323 39.130 33.40 23.15 36.90 3.41
3446 6339 4.706962 AGAGTATTTGGGCCAAAATGAGTC 59.293 41.667 33.40 28.21 36.90 3.36
3447 6340 3.769300 AGTATTTGGGCCAAAATGAGTCC 59.231 43.478 33.40 16.11 36.90 3.85
3448 6341 0.965439 TTTGGGCCAAAATGAGTCCG 59.035 50.000 28.69 0.00 29.89 4.79
3449 6342 0.111446 TTGGGCCAAAATGAGTCCGA 59.889 50.000 18.51 0.00 0.00 4.55
3450 6343 0.111446 TGGGCCAAAATGAGTCCGAA 59.889 50.000 2.13 0.00 0.00 4.30
3451 6344 0.526211 GGGCCAAAATGAGTCCGAAC 59.474 55.000 4.39 0.00 0.00 3.95
3452 6345 1.243902 GGCCAAAATGAGTCCGAACA 58.756 50.000 0.00 0.00 0.00 3.18
3453 6346 1.200020 GGCCAAAATGAGTCCGAACAG 59.800 52.381 0.00 0.00 0.00 3.16
3454 6347 1.200020 GCCAAAATGAGTCCGAACAGG 59.800 52.381 0.00 0.00 42.97 4.00
3455 6348 1.812571 CCAAAATGAGTCCGAACAGGG 59.187 52.381 0.00 0.00 41.52 4.45
3456 6349 2.552155 CCAAAATGAGTCCGAACAGGGA 60.552 50.000 0.00 0.00 41.52 4.20
3457 6350 2.744202 CAAAATGAGTCCGAACAGGGAG 59.256 50.000 0.00 0.00 41.52 4.30
3458 6351 0.250513 AATGAGTCCGAACAGGGAGC 59.749 55.000 0.00 0.00 41.52 4.70
3459 6352 0.904865 ATGAGTCCGAACAGGGAGCA 60.905 55.000 0.00 0.00 41.52 4.26
3460 6353 1.216710 GAGTCCGAACAGGGAGCAG 59.783 63.158 0.00 0.00 41.52 4.24
3461 6354 1.534235 AGTCCGAACAGGGAGCAGT 60.534 57.895 0.00 0.00 41.52 4.40
3462 6355 1.079750 GTCCGAACAGGGAGCAGTC 60.080 63.158 0.00 0.00 41.52 3.51
3463 6356 1.533033 TCCGAACAGGGAGCAGTCA 60.533 57.895 0.00 0.00 41.52 3.41
3464 6357 1.118965 TCCGAACAGGGAGCAGTCAA 61.119 55.000 0.00 0.00 41.52 3.18
3465 6358 0.036010 CCGAACAGGGAGCAGTCAAT 60.036 55.000 0.00 0.00 35.97 2.57
3466 6359 1.611673 CCGAACAGGGAGCAGTCAATT 60.612 52.381 0.00 0.00 35.97 2.32
3467 6360 2.154462 CGAACAGGGAGCAGTCAATTT 58.846 47.619 0.00 0.00 0.00 1.82
3468 6361 3.334691 CGAACAGGGAGCAGTCAATTTA 58.665 45.455 0.00 0.00 0.00 1.40
3469 6362 3.372206 CGAACAGGGAGCAGTCAATTTAG 59.628 47.826 0.00 0.00 0.00 1.85
3470 6363 2.716217 ACAGGGAGCAGTCAATTTAGC 58.284 47.619 0.00 0.00 0.00 3.09
3471 6364 2.307098 ACAGGGAGCAGTCAATTTAGCT 59.693 45.455 0.00 0.00 40.60 3.32
3472 6365 3.519510 ACAGGGAGCAGTCAATTTAGCTA 59.480 43.478 0.00 0.00 37.48 3.32
3473 6366 4.125703 CAGGGAGCAGTCAATTTAGCTAG 58.874 47.826 0.00 0.00 37.48 3.42
3474 6367 4.033709 AGGGAGCAGTCAATTTAGCTAGA 58.966 43.478 0.00 0.00 37.48 2.43
3475 6368 4.471386 AGGGAGCAGTCAATTTAGCTAGAA 59.529 41.667 0.00 0.00 37.48 2.10
3476 6369 4.572795 GGGAGCAGTCAATTTAGCTAGAAC 59.427 45.833 0.00 0.00 37.48 3.01
3477 6370 5.178797 GGAGCAGTCAATTTAGCTAGAACA 58.821 41.667 0.00 0.00 37.48 3.18
3478 6371 5.293079 GGAGCAGTCAATTTAGCTAGAACAG 59.707 44.000 0.00 0.00 37.48 3.16
3479 6372 5.799213 AGCAGTCAATTTAGCTAGAACAGT 58.201 37.500 0.00 0.00 35.19 3.55
3480 6373 6.936279 AGCAGTCAATTTAGCTAGAACAGTA 58.064 36.000 0.00 0.00 35.19 2.74
3481 6374 7.560368 AGCAGTCAATTTAGCTAGAACAGTAT 58.440 34.615 0.00 0.00 35.19 2.12
3482 6375 8.043710 AGCAGTCAATTTAGCTAGAACAGTATT 58.956 33.333 0.00 0.00 35.19 1.89
3483 6376 8.119226 GCAGTCAATTTAGCTAGAACAGTATTG 58.881 37.037 0.00 0.00 0.00 1.90
3484 6377 8.607459 CAGTCAATTTAGCTAGAACAGTATTGG 58.393 37.037 0.00 0.00 0.00 3.16
3485 6378 7.770897 AGTCAATTTAGCTAGAACAGTATTGGG 59.229 37.037 0.00 0.00 0.00 4.12
3486 6379 7.769044 GTCAATTTAGCTAGAACAGTATTGGGA 59.231 37.037 0.00 0.00 0.00 4.37
3487 6380 7.987458 TCAATTTAGCTAGAACAGTATTGGGAG 59.013 37.037 0.00 0.00 0.00 4.30
3488 6381 3.828875 AGCTAGAACAGTATTGGGAGC 57.171 47.619 0.00 0.00 0.00 4.70
3489 6382 2.436173 AGCTAGAACAGTATTGGGAGCC 59.564 50.000 0.00 0.00 0.00 4.70
3490 6383 2.485657 GCTAGAACAGTATTGGGAGCCC 60.486 54.545 0.00 0.00 0.00 5.19
3491 6384 0.541863 AGAACAGTATTGGGAGCCCG 59.458 55.000 0.29 0.00 39.42 6.13
3492 6385 1.077716 AACAGTATTGGGAGCCCGC 60.078 57.895 0.29 0.00 39.42 6.13
3493 6386 2.203209 CAGTATTGGGAGCCCGCC 60.203 66.667 0.29 0.00 39.42 6.13
3494 6387 2.690881 AGTATTGGGAGCCCGCCA 60.691 61.111 0.29 0.00 39.42 5.69
3495 6388 2.516225 GTATTGGGAGCCCGCCAC 60.516 66.667 0.29 0.00 39.42 5.01
3496 6389 3.804329 TATTGGGAGCCCGCCACC 61.804 66.667 0.29 0.00 39.42 4.61
3501 6394 4.796495 GGAGCCCGCCACCGAAAT 62.796 66.667 0.00 0.00 36.29 2.17
3502 6395 3.508840 GAGCCCGCCACCGAAATG 61.509 66.667 0.00 0.00 36.29 2.32
3509 6402 4.859784 CCACCGAAATGGCGAAAC 57.140 55.556 0.00 0.00 43.94 2.78
3510 6403 2.253513 CCACCGAAATGGCGAAACT 58.746 52.632 0.00 0.00 43.94 2.66
3511 6404 0.596082 CCACCGAAATGGCGAAACTT 59.404 50.000 0.00 0.00 43.94 2.66
3512 6405 1.665735 CCACCGAAATGGCGAAACTTG 60.666 52.381 0.00 0.00 43.94 3.16
3513 6406 0.596082 ACCGAAATGGCGAAACTTGG 59.404 50.000 0.00 0.00 43.94 3.61
3514 6407 0.732538 CCGAAATGGCGAAACTTGGC 60.733 55.000 0.00 0.00 0.00 4.52
3515 6408 0.039617 CGAAATGGCGAAACTTGGCA 60.040 50.000 0.00 0.00 46.52 4.92
3516 6409 1.701704 GAAATGGCGAAACTTGGCAG 58.298 50.000 0.00 0.00 45.62 4.85
3517 6410 0.318120 AAATGGCGAAACTTGGCAGG 59.682 50.000 0.00 0.00 45.62 4.85
3518 6411 1.535204 AATGGCGAAACTTGGCAGGG 61.535 55.000 0.44 0.00 45.62 4.45
3519 6412 4.056125 GGCGAAACTTGGCAGGGC 62.056 66.667 0.44 0.00 33.21 5.19
3520 6413 3.294493 GCGAAACTTGGCAGGGCA 61.294 61.111 0.44 0.00 31.76 5.36
3521 6414 2.639327 GCGAAACTTGGCAGGGCAT 61.639 57.895 0.44 0.00 31.76 4.40
3522 6415 1.312371 GCGAAACTTGGCAGGGCATA 61.312 55.000 0.44 0.00 31.76 3.14
3523 6416 1.392589 CGAAACTTGGCAGGGCATAT 58.607 50.000 0.44 0.00 0.00 1.78
3524 6417 1.750778 CGAAACTTGGCAGGGCATATT 59.249 47.619 0.44 0.00 0.00 1.28
3525 6418 2.948979 CGAAACTTGGCAGGGCATATTA 59.051 45.455 0.44 0.00 0.00 0.98
3526 6419 3.003689 CGAAACTTGGCAGGGCATATTAG 59.996 47.826 0.44 0.00 0.00 1.73
3527 6420 3.951563 AACTTGGCAGGGCATATTAGA 57.048 42.857 0.44 0.00 0.00 2.10
3528 6421 3.498774 ACTTGGCAGGGCATATTAGAG 57.501 47.619 0.44 0.00 0.00 2.43
3529 6422 2.107204 ACTTGGCAGGGCATATTAGAGG 59.893 50.000 0.44 0.00 0.00 3.69
3530 6423 2.116869 TGGCAGGGCATATTAGAGGA 57.883 50.000 0.00 0.00 0.00 3.71
3531 6424 2.636005 TGGCAGGGCATATTAGAGGAT 58.364 47.619 0.00 0.00 0.00 3.24
3532 6425 3.802132 TGGCAGGGCATATTAGAGGATA 58.198 45.455 0.00 0.00 0.00 2.59
3533 6426 4.374403 TGGCAGGGCATATTAGAGGATAT 58.626 43.478 0.00 0.00 0.00 1.63
3534 6427 4.790246 TGGCAGGGCATATTAGAGGATATT 59.210 41.667 0.00 0.00 0.00 1.28
3535 6428 5.104360 TGGCAGGGCATATTAGAGGATATTC 60.104 44.000 0.00 0.00 0.00 1.75
3536 6429 5.053145 GCAGGGCATATTAGAGGATATTCG 58.947 45.833 0.00 0.00 0.00 3.34
3537 6430 5.605534 CAGGGCATATTAGAGGATATTCGG 58.394 45.833 0.00 0.00 0.00 4.30
3538 6431 4.656112 AGGGCATATTAGAGGATATTCGGG 59.344 45.833 0.00 0.00 0.00 5.14
3539 6432 4.381411 GGCATATTAGAGGATATTCGGGC 58.619 47.826 0.00 0.00 0.00 6.13
3540 6433 4.051922 GCATATTAGAGGATATTCGGGCG 58.948 47.826 0.00 0.00 0.00 6.13
3541 6434 4.621991 CATATTAGAGGATATTCGGGCGG 58.378 47.826 0.00 0.00 0.00 6.13
3542 6435 1.263356 TTAGAGGATATTCGGGCGGG 58.737 55.000 0.00 0.00 0.00 6.13
3543 6436 0.113776 TAGAGGATATTCGGGCGGGT 59.886 55.000 0.00 0.00 0.00 5.28
3544 6437 1.004918 GAGGATATTCGGGCGGGTG 60.005 63.158 0.00 0.00 0.00 4.61
3545 6438 2.032071 GGATATTCGGGCGGGTGG 59.968 66.667 0.00 0.00 0.00 4.61
3546 6439 2.814835 GGATATTCGGGCGGGTGGT 61.815 63.158 0.00 0.00 0.00 4.16
3547 6440 1.597027 GATATTCGGGCGGGTGGTG 60.597 63.158 0.00 0.00 0.00 4.17
3548 6441 3.114825 ATATTCGGGCGGGTGGTGG 62.115 63.158 0.00 0.00 0.00 4.61
3552 6445 4.849310 CGGGCGGGTGGTGGTATG 62.849 72.222 0.00 0.00 0.00 2.39
3553 6446 4.499633 GGGCGGGTGGTGGTATGG 62.500 72.222 0.00 0.00 0.00 2.74
3554 6447 3.404438 GGCGGGTGGTGGTATGGA 61.404 66.667 0.00 0.00 0.00 3.41
3555 6448 2.752807 GGCGGGTGGTGGTATGGAT 61.753 63.158 0.00 0.00 0.00 3.41
3556 6449 1.412453 GGCGGGTGGTGGTATGGATA 61.412 60.000 0.00 0.00 0.00 2.59
3557 6450 0.470766 GCGGGTGGTGGTATGGATAA 59.529 55.000 0.00 0.00 0.00 1.75
3558 6451 1.073284 GCGGGTGGTGGTATGGATAAT 59.927 52.381 0.00 0.00 0.00 1.28
3559 6452 2.488347 GCGGGTGGTGGTATGGATAATT 60.488 50.000 0.00 0.00 0.00 1.40
3560 6453 3.827722 CGGGTGGTGGTATGGATAATTT 58.172 45.455 0.00 0.00 0.00 1.82
3561 6454 4.211920 CGGGTGGTGGTATGGATAATTTT 58.788 43.478 0.00 0.00 0.00 1.82
3562 6455 5.378332 CGGGTGGTGGTATGGATAATTTTA 58.622 41.667 0.00 0.00 0.00 1.52
3563 6456 6.007703 CGGGTGGTGGTATGGATAATTTTAT 58.992 40.000 0.00 0.00 0.00 1.40
3564 6457 6.150474 CGGGTGGTGGTATGGATAATTTTATC 59.850 42.308 2.32 2.32 39.01 1.75
3625 6555 6.054295 CCACTTAGAGGGATTTCATCAGAAG 58.946 44.000 0.00 0.00 34.71 2.85
3658 6588 1.160329 AACACCAGTCGCTGACAAGC 61.160 55.000 8.20 0.00 46.66 4.01
3672 6602 1.008538 CAAGCGACAACCTTGCACC 60.009 57.895 0.00 0.00 34.00 5.01
3674 6604 1.447317 AAGCGACAACCTTGCACCTG 61.447 55.000 0.00 0.00 0.00 4.00
3677 6611 1.238439 CGACAACCTTGCACCTGAAT 58.762 50.000 0.00 0.00 0.00 2.57
3729 6663 2.661979 CGCGCTTGGTTCAAGTAGAAAC 60.662 50.000 5.56 0.00 44.46 2.78
3744 6678 5.485620 AGTAGAAACGGTTATTCAGGAACC 58.514 41.667 0.00 0.00 42.57 3.62
3755 6689 6.206048 GGTTATTCAGGAACCGAAAGAAAGAA 59.794 38.462 0.00 0.00 37.22 2.52
3761 6695 7.645402 TCAGGAACCGAAAGAAAGAAAAATAC 58.355 34.615 0.00 0.00 0.00 1.89
3806 7802 0.247736 AGTTGGGAGCACGTCTCATC 59.752 55.000 14.26 8.20 43.70 2.92
3884 7900 1.326245 CGTGTTTTGTCTTCGTCAGCA 59.674 47.619 0.00 0.00 0.00 4.41
3970 7988 0.389391 AAGTCGCCGTATGATGGAGG 59.611 55.000 0.00 0.00 0.00 4.30
3971 7989 0.467474 AGTCGCCGTATGATGGAGGA 60.467 55.000 0.00 0.00 0.00 3.71
3972 7990 0.039074 GTCGCCGTATGATGGAGGAG 60.039 60.000 0.00 0.00 0.00 3.69
4065 8180 2.634940 ACTGCACAGTATTGACACCTCT 59.365 45.455 0.35 0.00 40.43 3.69
4068 8183 3.261643 TGCACAGTATTGACACCTCTGAT 59.738 43.478 0.00 0.00 0.00 2.90
4148 8280 0.682852 CGTGGTCCAGGTCCAAGTTA 59.317 55.000 7.05 0.00 36.68 2.24
4149 8281 1.278127 CGTGGTCCAGGTCCAAGTTAT 59.722 52.381 7.05 0.00 36.68 1.89
4172 8304 0.454957 CACAAAAGGCGCGATCCTTG 60.455 55.000 17.23 12.87 45.25 3.61
4191 8323 2.114670 CACATGCCCGCGATCCTTT 61.115 57.895 8.23 0.00 0.00 3.11
4299 9672 2.049435 CCAAGGGTTGGTTGCCTTC 58.951 57.895 0.00 0.00 45.93 3.46
4316 9689 7.427318 GGTTGCCTTCGATATAAAAGTAAAACG 59.573 37.037 0.00 0.00 0.00 3.60
4317 9690 7.007313 TGCCTTCGATATAAAAGTAAAACGG 57.993 36.000 0.00 0.00 0.00 4.44
4318 9691 6.594937 TGCCTTCGATATAAAAGTAAAACGGT 59.405 34.615 0.00 0.00 0.00 4.83
4362 9735 2.973899 TGGAGACGCCAGCTCTTC 59.026 61.111 0.00 0.00 43.33 2.87
4363 9736 1.908299 TGGAGACGCCAGCTCTTCA 60.908 57.895 0.00 0.00 43.33 3.02
4366 9739 0.108424 GAGACGCCAGCTCTTCATGT 60.108 55.000 0.00 0.00 0.00 3.21
4367 9740 0.390866 AGACGCCAGCTCTTCATGTG 60.391 55.000 0.00 0.00 0.00 3.21
4368 9741 1.364626 GACGCCAGCTCTTCATGTGG 61.365 60.000 0.00 0.00 0.00 4.17
4382 9794 7.041508 GCTCTTCATGTGGAAAGGTATATCAAG 60.042 40.741 0.00 0.00 34.44 3.02
4414 9946 1.201414 GGCCGTTTAATGGTGAACTGG 59.799 52.381 5.02 0.00 0.00 4.00
4492 10029 2.404215 TGCGAAAGTTCTGCACTACTC 58.596 47.619 6.51 0.00 32.94 2.59
4606 10165 0.895559 CCAAGTTCTTCCTGGTGGCC 60.896 60.000 0.00 0.00 0.00 5.36
4705 10264 1.614413 GTCTTCTCCAAGTCCGTGACT 59.386 52.381 1.23 1.23 45.64 3.41
4742 10301 3.006677 GCATGAAGGGCCTGGGTA 58.993 61.111 6.92 0.00 0.00 3.69
4867 10426 0.179043 TCCTTTACGTGCTTGTGCCA 60.179 50.000 0.00 0.00 38.71 4.92
5077 10636 2.282391 AGCTTCGCCACCATTGCA 60.282 55.556 0.00 0.00 0.00 4.08
5166 10753 2.810274 TGACACAGCTCAGCTTTGAATC 59.190 45.455 19.88 8.04 38.46 2.52
5330 10924 0.317160 CAGCGTGGTGGTTCTACTCA 59.683 55.000 0.00 0.00 0.00 3.41
5378 10973 1.153489 CATCCTCTGCACCGTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
5399 10994 1.920835 GGACCAGGTTCAGCTCCCT 60.921 63.158 0.00 0.00 0.00 4.20
5519 11117 9.815936 CAGAATTTTTAATGTTTCTCCATTTGC 57.184 29.630 0.00 0.00 36.48 3.68
5572 11187 8.574251 AAACTGACCAAAGCCTTTAAAATTTT 57.426 26.923 8.75 8.75 0.00 1.82
6137 11774 6.049149 CGTGTACATCTTCCACAGGATATTT 58.951 40.000 0.00 0.00 31.43 1.40
6510 12152 4.837972 AGCTAAATCTCTTTCACCCTCAC 58.162 43.478 0.00 0.00 0.00 3.51
6547 12201 6.767456 AGATTAGTCATGATCCATTCCAGTC 58.233 40.000 0.00 0.00 0.00 3.51
6563 12217 3.119602 TCCAGTCGTGTGAGTGTAATAGC 60.120 47.826 0.01 0.00 42.88 2.97
6588 12242 8.834465 GCATGATCATAGATTTCTGTTGTACTT 58.166 33.333 8.15 0.00 0.00 2.24
6641 12309 3.435671 AGATGCGTGTAAACTGTAAAGGC 59.564 43.478 0.00 0.00 0.00 4.35
6649 12317 2.358939 AACTGTAAAGGCCGTAGTCG 57.641 50.000 0.00 0.00 0.00 4.18
6763 12444 6.544197 TCCTATAAACTTTGACACTTGTTGCA 59.456 34.615 0.00 0.00 0.00 4.08
6825 12510 6.618287 TGAATTGGAGAACAGTAACACAAG 57.382 37.500 0.00 0.00 0.00 3.16
6829 12519 2.224314 GGAGAACAGTAACACAAGCTGC 59.776 50.000 0.00 0.00 33.87 5.25
6870 12561 4.679197 TGATAGCAAATTCAAACGCACAAC 59.321 37.500 0.00 0.00 0.00 3.32
6903 12594 5.764131 TGGCGACATTTTTCGTTTCTTATT 58.236 33.333 0.00 0.00 41.26 1.40
6910 12601 7.206687 ACATTTTTCGTTTCTTATTGGCTTCA 58.793 30.769 0.00 0.00 0.00 3.02
6958 12649 3.362706 ACATAGAGGAACGACTAGGCAA 58.637 45.455 0.00 0.00 30.55 4.52
6978 12669 5.754890 GGCAACAGATTGTTTCAATTGAACT 59.245 36.000 20.35 10.95 38.77 3.01
6997 12688 7.333528 TGAACTAAATGGCACCAGATTAATC 57.666 36.000 7.41 7.41 0.00 1.75
7021 12715 5.220912 CCCGTACTACATTACAATCGACTCA 60.221 44.000 0.00 0.00 0.00 3.41
7050 12744 2.356227 GCTAAAGGGAACAGGGAAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
7129 12826 1.684734 GTTGAGGAGGCCGAGGGTA 60.685 63.158 0.00 0.00 0.00 3.69
7417 13120 1.202973 CTGTATCGCGCTGGAACGAG 61.203 60.000 5.56 0.00 42.31 4.18
7419 13122 0.930742 GTATCGCGCTGGAACGAGAG 60.931 60.000 5.56 0.00 44.87 3.20
7420 13123 1.093496 TATCGCGCTGGAACGAGAGA 61.093 55.000 5.56 0.00 44.87 3.10
7423 13126 2.876645 CGCTGGAACGAGAGACGC 60.877 66.667 0.00 0.00 46.94 5.19
7424 13127 2.507324 GCTGGAACGAGAGACGCC 60.507 66.667 0.00 0.00 46.94 5.68
7425 13128 2.202492 CTGGAACGAGAGACGCCG 60.202 66.667 0.00 0.00 46.94 6.46
7426 13129 2.670592 TGGAACGAGAGACGCCGA 60.671 61.111 0.00 0.00 46.94 5.54
7466 13172 2.770048 ATGGAGGCGGAAGGGAGG 60.770 66.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 49 9.647797 CACTATGGAAACTACAGTGTAAACATA 57.352 33.333 4.21 7.78 33.53 2.29
77 82 8.367156 ACTAAAATTGTCATATGGCAACTTTGT 58.633 29.630 29.74 23.95 42.96 2.83
78 83 8.761575 ACTAAAATTGTCATATGGCAACTTTG 57.238 30.769 29.74 23.47 42.96 2.77
134 140 9.258826 CAAAATACTGAAATTGTCATGGTCAAA 57.741 29.630 7.95 0.00 35.07 2.69
135 141 8.637099 TCAAAATACTGAAATTGTCATGGTCAA 58.363 29.630 6.68 6.68 35.07 3.18
136 142 8.081633 GTCAAAATACTGAAATTGTCATGGTCA 58.918 33.333 0.00 0.00 35.07 4.02
231 237 2.363306 AACCAGACTTGCCATGAACA 57.637 45.000 0.00 0.00 0.00 3.18
313 324 6.015180 ACACTGAAGTTGCCATGATATGTTTT 60.015 34.615 0.00 0.00 0.00 2.43
345 356 5.593502 TGTCTATTGCACATGAATTGCCATA 59.406 36.000 0.00 0.07 39.39 2.74
445 461 4.006989 TCGGTTTCACCATTAAGTCCATG 58.993 43.478 0.00 0.00 38.47 3.66
451 467 6.494893 TTGAAGATCGGTTTCACCATTAAG 57.505 37.500 0.00 0.00 38.47 1.85
531 548 1.915350 CAACGAATGCATGCATGTGAC 59.085 47.619 32.79 21.38 36.68 3.67
546 563 2.287970 ACAGATTGCACTACGTCAACGA 60.288 45.455 9.88 0.00 43.02 3.85
549 566 2.412870 CCACAGATTGCACTACGTCAA 58.587 47.619 0.00 0.00 0.00 3.18
556 573 0.036164 TAACGCCCACAGATTGCACT 59.964 50.000 0.00 0.00 0.00 4.40
569 586 0.739813 AGTTGGACGCTGATAACGCC 60.740 55.000 0.00 0.00 0.00 5.68
570 587 1.917273 TAGTTGGACGCTGATAACGC 58.083 50.000 0.00 0.00 0.00 4.84
571 588 4.914312 TTTTAGTTGGACGCTGATAACG 57.086 40.909 0.00 0.00 0.00 3.18
572 589 6.476243 TCTTTTTAGTTGGACGCTGATAAC 57.524 37.500 0.00 0.00 0.00 1.89
573 590 7.357303 GTTTCTTTTTAGTTGGACGCTGATAA 58.643 34.615 0.00 0.00 0.00 1.75
574 591 6.347079 CGTTTCTTTTTAGTTGGACGCTGATA 60.347 38.462 0.00 0.00 0.00 2.15
575 592 5.560183 CGTTTCTTTTTAGTTGGACGCTGAT 60.560 40.000 0.00 0.00 0.00 2.90
576 593 4.260456 CGTTTCTTTTTAGTTGGACGCTGA 60.260 41.667 0.00 0.00 0.00 4.26
577 594 3.966218 CGTTTCTTTTTAGTTGGACGCTG 59.034 43.478 0.00 0.00 0.00 5.18
578 595 3.002965 CCGTTTCTTTTTAGTTGGACGCT 59.997 43.478 0.00 0.00 0.00 5.07
579 596 3.002553 TCCGTTTCTTTTTAGTTGGACGC 59.997 43.478 0.00 0.00 0.00 5.19
580 597 4.319261 CCTCCGTTTCTTTTTAGTTGGACG 60.319 45.833 0.00 0.00 0.00 4.79
581 598 4.023450 CCCTCCGTTTCTTTTTAGTTGGAC 60.023 45.833 0.00 0.00 0.00 4.02
582 599 4.139038 CCCTCCGTTTCTTTTTAGTTGGA 58.861 43.478 0.00 0.00 0.00 3.53
583 600 4.139038 TCCCTCCGTTTCTTTTTAGTTGG 58.861 43.478 0.00 0.00 0.00 3.77
584 601 4.820173 ACTCCCTCCGTTTCTTTTTAGTTG 59.180 41.667 0.00 0.00 0.00 3.16
585 602 5.045012 ACTCCCTCCGTTTCTTTTTAGTT 57.955 39.130 0.00 0.00 0.00 2.24
586 603 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
587 604 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
588 605 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
589 606 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
590 607 4.132336 GTTGTACTCCCTCCGTTTCTTTT 58.868 43.478 0.00 0.00 0.00 2.27
591 608 3.390311 AGTTGTACTCCCTCCGTTTCTTT 59.610 43.478 0.00 0.00 0.00 2.52
592 609 2.970640 AGTTGTACTCCCTCCGTTTCTT 59.029 45.455 0.00 0.00 0.00 2.52
593 610 2.561858 GAGTTGTACTCCCTCCGTTTCT 59.438 50.000 0.00 0.00 39.28 2.52
594 611 2.561858 AGAGTTGTACTCCCTCCGTTTC 59.438 50.000 3.33 0.00 46.18 2.78
595 612 2.561858 GAGAGTTGTACTCCCTCCGTTT 59.438 50.000 3.33 0.00 46.18 3.60
596 613 2.169330 GAGAGTTGTACTCCCTCCGTT 58.831 52.381 3.33 0.00 46.18 4.44
597 614 1.836802 GAGAGTTGTACTCCCTCCGT 58.163 55.000 3.33 0.00 46.18 4.69
598 615 0.733729 CGAGAGTTGTACTCCCTCCG 59.266 60.000 3.33 0.25 46.18 4.63
599 616 2.125773 TCGAGAGTTGTACTCCCTCC 57.874 55.000 3.33 0.00 46.18 4.30
600 617 5.766174 AGATAATCGAGAGTTGTACTCCCTC 59.234 44.000 3.33 0.00 46.18 4.30
601 618 5.533154 CAGATAATCGAGAGTTGTACTCCCT 59.467 44.000 3.33 0.00 46.18 4.20
602 619 5.278561 CCAGATAATCGAGAGTTGTACTCCC 60.279 48.000 3.33 0.00 46.18 4.30
603 620 5.278561 CCCAGATAATCGAGAGTTGTACTCC 60.279 48.000 3.33 0.00 46.18 3.85
604 621 5.299782 ACCCAGATAATCGAGAGTTGTACTC 59.700 44.000 0.00 0.00 45.38 2.59
605 622 5.202004 ACCCAGATAATCGAGAGTTGTACT 58.798 41.667 0.00 0.00 0.00 2.73
606 623 5.517322 ACCCAGATAATCGAGAGTTGTAC 57.483 43.478 0.00 0.00 0.00 2.90
623 640 7.713750 TCTTCGTTCAAGATACTTATACCCAG 58.286 38.462 0.00 0.00 36.08 4.45
638 655 8.673711 TCTTCTTTTCAAATCTTCTTCGTTCAA 58.326 29.630 0.00 0.00 0.00 2.69
647 664 7.363431 ACCGTGAATCTTCTTTTCAAATCTTC 58.637 34.615 0.00 0.00 35.03 2.87
654 671 9.309516 GTATATGTACCGTGAATCTTCTTTTCA 57.690 33.333 0.00 0.00 0.00 2.69
665 682 4.614555 ACGAACGTATATGTACCGTGAA 57.385 40.909 18.65 0.00 32.56 3.18
667 684 4.211164 TCCTACGAACGTATATGTACCGTG 59.789 45.833 24.05 17.11 34.59 4.94
669 686 4.211164 TGTCCTACGAACGTATATGTACCG 59.789 45.833 14.50 14.50 0.00 4.02
670 687 5.673337 TGTCCTACGAACGTATATGTACC 57.327 43.478 7.50 0.00 0.00 3.34
683 703 2.166459 CAGGAATCTTGCTGTCCTACGA 59.834 50.000 3.52 0.00 39.87 3.43
719 739 5.401531 ACGTAAGACAGGAATCTTGCTTA 57.598 39.130 0.00 0.00 39.33 3.09
971 996 1.133009 AGGTGGTTTAATGGTGGCCAA 60.133 47.619 7.24 0.00 36.95 4.52
1607 1648 2.732763 TCCATTTGATTCCGATGCCAA 58.267 42.857 0.00 0.00 0.00 4.52
2322 2866 2.040544 GGGTGCACTCCCATGTTCG 61.041 63.158 17.98 0.00 46.30 3.95
2372 2916 2.489329 GGTTTAAATCAGCAGCAGCAGA 59.511 45.455 3.17 0.11 45.49 4.26
2395 2939 2.496111 TGGACAACGTAATGGTGGTTC 58.504 47.619 0.00 0.00 0.00 3.62
2429 3283 6.869315 TGCACAACTAAGCACTATGTTTTA 57.131 33.333 0.00 0.00 35.51 1.52
2452 3306 3.525800 AGGCCAAACATAGTCCAAGTT 57.474 42.857 5.01 0.00 0.00 2.66
2460 3314 1.401905 GCTCGGAAAGGCCAAACATAG 59.598 52.381 5.01 0.00 35.94 2.23
2623 3516 0.808453 CACCCATAACCTACCACGCG 60.808 60.000 3.53 3.53 0.00 6.01
2700 3596 3.997021 GGCACTACGATCATATTTCCCTG 59.003 47.826 0.00 0.00 0.00 4.45
2777 3673 9.387123 CGAAGTTCCTCTAAAATTTCTTTGAAG 57.613 33.333 0.00 0.00 0.00 3.02
2910 3817 4.722526 TCAAAATGAGGTTTGAGAGGGA 57.277 40.909 0.00 0.00 41.45 4.20
2911 3818 5.990120 ATTCAAAATGAGGTTTGAGAGGG 57.010 39.130 1.14 0.00 45.62 4.30
2917 3824 8.458843 ACGTAGGATTATTCAAAATGAGGTTTG 58.541 33.333 0.00 0.00 39.41 2.93
2920 3827 8.575649 AAACGTAGGATTATTCAAAATGAGGT 57.424 30.769 0.00 0.00 0.00 3.85
2921 3828 9.503427 GAAAACGTAGGATTATTCAAAATGAGG 57.497 33.333 0.00 0.00 0.00 3.86
2922 3829 9.503427 GGAAAACGTAGGATTATTCAAAATGAG 57.497 33.333 0.00 0.00 0.00 2.90
2924 3831 9.855021 AAGGAAAACGTAGGATTATTCAAAATG 57.145 29.630 0.00 0.00 0.00 2.32
2926 3833 9.685828 CAAAGGAAAACGTAGGATTATTCAAAA 57.314 29.630 0.00 0.00 0.00 2.44
3071 4327 6.934645 TCTAAATCAAACCTCGACATCAACTT 59.065 34.615 0.00 0.00 0.00 2.66
3072 4328 6.369065 GTCTAAATCAAACCTCGACATCAACT 59.631 38.462 0.00 0.00 0.00 3.16
3176 4519 3.290567 TGCATCATGGCAGGCAAC 58.709 55.556 0.00 0.00 39.25 4.17
3314 6207 5.843421 ACTAGATTCAGCCATTCAGGTATCT 59.157 40.000 0.00 0.00 40.61 1.98
3315 6208 6.107901 ACTAGATTCAGCCATTCAGGTATC 57.892 41.667 0.00 0.00 40.61 2.24
3316 6209 5.279206 CGACTAGATTCAGCCATTCAGGTAT 60.279 44.000 0.00 0.00 40.61 2.73
3321 6214 2.483714 GCCGACTAGATTCAGCCATTCA 60.484 50.000 0.00 0.00 0.00 2.57
3325 6218 1.123077 ATGCCGACTAGATTCAGCCA 58.877 50.000 0.00 0.00 0.00 4.75
3370 6263 2.106683 GCTCAGGCGTTGGCGTTAT 61.107 57.895 0.00 0.00 41.24 1.89
3371 6264 2.740826 GCTCAGGCGTTGGCGTTA 60.741 61.111 0.00 0.00 41.24 3.18
3381 6274 3.880846 CCGGCAATTCGCTCAGGC 61.881 66.667 0.00 0.00 41.91 4.85
3382 6275 3.880846 GCCGGCAATTCGCTCAGG 61.881 66.667 24.80 3.77 41.91 3.86
3383 6276 4.228097 CGCCGGCAATTCGCTCAG 62.228 66.667 28.98 0.98 41.91 3.35
3385 6278 4.223964 GACGCCGGCAATTCGCTC 62.224 66.667 28.98 6.21 41.91 5.03
3387 6280 4.811761 GTGACGCCGGCAATTCGC 62.812 66.667 28.98 20.99 41.28 4.70
3388 6281 2.252127 ATTGTGACGCCGGCAATTCG 62.252 55.000 28.98 12.44 29.59 3.34
3389 6282 0.730265 TATTGTGACGCCGGCAATTC 59.270 50.000 28.98 19.36 34.97 2.17
3390 6283 0.732571 CTATTGTGACGCCGGCAATT 59.267 50.000 28.98 10.01 34.97 2.32
3391 6284 0.392461 ACTATTGTGACGCCGGCAAT 60.392 50.000 28.98 19.88 36.83 3.56
3392 6285 0.604243 AACTATTGTGACGCCGGCAA 60.604 50.000 28.98 13.47 0.00 4.52
3393 6286 0.604243 AAACTATTGTGACGCCGGCA 60.604 50.000 28.98 5.63 0.00 5.69
3394 6287 0.519961 AAAACTATTGTGACGCCGGC 59.480 50.000 19.07 19.07 0.00 6.13
3395 6288 2.737783 TGTAAAACTATTGTGACGCCGG 59.262 45.455 0.00 0.00 0.00 6.13
3396 6289 4.392619 TTGTAAAACTATTGTGACGCCG 57.607 40.909 0.00 0.00 0.00 6.46
3397 6290 7.745015 TCTATTTGTAAAACTATTGTGACGCC 58.255 34.615 0.00 0.00 0.00 5.68
3398 6291 9.262472 CTTCTATTTGTAAAACTATTGTGACGC 57.738 33.333 0.00 0.00 0.00 5.19
3409 6302 9.569167 GCCCAAATACTCTTCTATTTGTAAAAC 57.431 33.333 9.63 0.00 40.39 2.43
3410 6303 8.745590 GGCCCAAATACTCTTCTATTTGTAAAA 58.254 33.333 0.00 0.00 40.39 1.52
3411 6304 7.891183 TGGCCCAAATACTCTTCTATTTGTAAA 59.109 33.333 0.00 0.00 40.39 2.01
3412 6305 7.406916 TGGCCCAAATACTCTTCTATTTGTAA 58.593 34.615 0.00 0.00 40.39 2.41
3413 6306 6.964464 TGGCCCAAATACTCTTCTATTTGTA 58.036 36.000 0.00 0.00 40.39 2.41
3414 6307 5.826643 TGGCCCAAATACTCTTCTATTTGT 58.173 37.500 0.00 0.00 40.39 2.83
3415 6308 6.773976 TTGGCCCAAATACTCTTCTATTTG 57.226 37.500 0.00 5.14 41.14 2.32
3416 6309 7.790782 TTTTGGCCCAAATACTCTTCTATTT 57.209 32.000 10.24 0.00 33.19 1.40
3417 6310 7.619302 TCATTTTGGCCCAAATACTCTTCTATT 59.381 33.333 14.08 0.00 33.19 1.73
3418 6311 7.125391 TCATTTTGGCCCAAATACTCTTCTAT 58.875 34.615 14.08 0.00 33.19 1.98
3419 6312 6.489603 TCATTTTGGCCCAAATACTCTTCTA 58.510 36.000 14.08 0.00 33.19 2.10
3420 6313 5.332743 TCATTTTGGCCCAAATACTCTTCT 58.667 37.500 14.08 0.00 33.19 2.85
3421 6314 5.185828 ACTCATTTTGGCCCAAATACTCTTC 59.814 40.000 14.08 0.00 33.19 2.87
3422 6315 5.086621 ACTCATTTTGGCCCAAATACTCTT 58.913 37.500 14.08 0.00 33.19 2.85
3423 6316 4.677182 ACTCATTTTGGCCCAAATACTCT 58.323 39.130 14.08 0.00 33.19 3.24
3424 6317 4.142160 GGACTCATTTTGGCCCAAATACTC 60.142 45.833 14.08 8.83 33.19 2.59
3425 6318 3.769300 GGACTCATTTTGGCCCAAATACT 59.231 43.478 14.08 0.60 33.19 2.12
3426 6319 3.428862 CGGACTCATTTTGGCCCAAATAC 60.429 47.826 14.08 6.86 33.19 1.89
3427 6320 2.757868 CGGACTCATTTTGGCCCAAATA 59.242 45.455 14.08 1.73 33.19 1.40
3428 6321 1.550072 CGGACTCATTTTGGCCCAAAT 59.450 47.619 10.24 8.96 33.19 2.32
3429 6322 0.965439 CGGACTCATTTTGGCCCAAA 59.035 50.000 4.38 4.38 0.00 3.28
3430 6323 0.111446 TCGGACTCATTTTGGCCCAA 59.889 50.000 0.00 0.00 0.00 4.12
3431 6324 0.111446 TTCGGACTCATTTTGGCCCA 59.889 50.000 0.00 0.00 0.00 5.36
3432 6325 0.526211 GTTCGGACTCATTTTGGCCC 59.474 55.000 0.00 0.00 0.00 5.80
3433 6326 1.200020 CTGTTCGGACTCATTTTGGCC 59.800 52.381 0.00 0.00 0.00 5.36
3434 6327 1.200020 CCTGTTCGGACTCATTTTGGC 59.800 52.381 0.00 0.00 33.16 4.52
3435 6328 1.812571 CCCTGTTCGGACTCATTTTGG 59.187 52.381 0.00 0.00 33.16 3.28
3436 6329 2.744202 CTCCCTGTTCGGACTCATTTTG 59.256 50.000 0.00 0.00 33.16 2.44
3437 6330 2.876079 GCTCCCTGTTCGGACTCATTTT 60.876 50.000 0.00 0.00 33.16 1.82
3438 6331 1.339151 GCTCCCTGTTCGGACTCATTT 60.339 52.381 0.00 0.00 33.16 2.32
3439 6332 0.250513 GCTCCCTGTTCGGACTCATT 59.749 55.000 0.00 0.00 33.16 2.57
3440 6333 0.904865 TGCTCCCTGTTCGGACTCAT 60.905 55.000 0.00 0.00 33.16 2.90
3441 6334 1.533033 TGCTCCCTGTTCGGACTCA 60.533 57.895 0.00 0.00 33.16 3.41
3442 6335 1.216710 CTGCTCCCTGTTCGGACTC 59.783 63.158 0.00 0.00 33.16 3.36
3443 6336 1.534235 ACTGCTCCCTGTTCGGACT 60.534 57.895 0.00 0.00 33.16 3.85
3444 6337 1.079750 GACTGCTCCCTGTTCGGAC 60.080 63.158 0.00 0.00 33.16 4.79
3445 6338 1.118965 TTGACTGCTCCCTGTTCGGA 61.119 55.000 0.00 0.00 33.16 4.55
3446 6339 0.036010 ATTGACTGCTCCCTGTTCGG 60.036 55.000 0.00 0.00 0.00 4.30
3447 6340 1.813513 AATTGACTGCTCCCTGTTCG 58.186 50.000 0.00 0.00 0.00 3.95
3448 6341 3.127721 GCTAAATTGACTGCTCCCTGTTC 59.872 47.826 0.00 0.00 0.00 3.18
3449 6342 3.084786 GCTAAATTGACTGCTCCCTGTT 58.915 45.455 0.00 0.00 0.00 3.16
3450 6343 2.307098 AGCTAAATTGACTGCTCCCTGT 59.693 45.455 0.00 0.00 0.00 4.00
3451 6344 2.996631 AGCTAAATTGACTGCTCCCTG 58.003 47.619 0.00 0.00 0.00 4.45
3452 6345 4.033709 TCTAGCTAAATTGACTGCTCCCT 58.966 43.478 0.00 0.00 37.02 4.20
3453 6346 4.408182 TCTAGCTAAATTGACTGCTCCC 57.592 45.455 0.00 0.00 37.02 4.30
3454 6347 5.178797 TGTTCTAGCTAAATTGACTGCTCC 58.821 41.667 0.00 0.00 37.02 4.70
3455 6348 5.872070 ACTGTTCTAGCTAAATTGACTGCTC 59.128 40.000 0.00 0.00 37.02 4.26
3456 6349 5.799213 ACTGTTCTAGCTAAATTGACTGCT 58.201 37.500 0.00 0.00 39.30 4.24
3457 6350 7.778470 ATACTGTTCTAGCTAAATTGACTGC 57.222 36.000 0.00 0.00 0.00 4.40
3458 6351 8.607459 CCAATACTGTTCTAGCTAAATTGACTG 58.393 37.037 0.00 0.00 0.00 3.51
3459 6352 7.770897 CCCAATACTGTTCTAGCTAAATTGACT 59.229 37.037 0.00 0.00 0.00 3.41
3460 6353 7.769044 TCCCAATACTGTTCTAGCTAAATTGAC 59.231 37.037 0.00 0.00 0.00 3.18
3461 6354 7.857456 TCCCAATACTGTTCTAGCTAAATTGA 58.143 34.615 0.00 0.00 0.00 2.57
3462 6355 7.254932 GCTCCCAATACTGTTCTAGCTAAATTG 60.255 40.741 0.00 0.00 0.00 2.32
3463 6356 6.768381 GCTCCCAATACTGTTCTAGCTAAATT 59.232 38.462 0.00 0.00 0.00 1.82
3464 6357 6.292150 GCTCCCAATACTGTTCTAGCTAAAT 58.708 40.000 0.00 0.00 0.00 1.40
3465 6358 5.396436 GGCTCCCAATACTGTTCTAGCTAAA 60.396 44.000 0.00 0.00 0.00 1.85
3466 6359 4.101119 GGCTCCCAATACTGTTCTAGCTAA 59.899 45.833 0.00 0.00 0.00 3.09
3467 6360 3.641906 GGCTCCCAATACTGTTCTAGCTA 59.358 47.826 0.00 0.00 0.00 3.32
3468 6361 2.436173 GGCTCCCAATACTGTTCTAGCT 59.564 50.000 0.00 0.00 0.00 3.32
3469 6362 2.485657 GGGCTCCCAATACTGTTCTAGC 60.486 54.545 0.00 0.00 35.81 3.42
3470 6363 2.224066 CGGGCTCCCAATACTGTTCTAG 60.224 54.545 5.70 0.00 35.37 2.43
3471 6364 1.760613 CGGGCTCCCAATACTGTTCTA 59.239 52.381 5.70 0.00 35.37 2.10
3472 6365 0.541863 CGGGCTCCCAATACTGTTCT 59.458 55.000 5.70 0.00 35.37 3.01
3473 6366 1.095807 GCGGGCTCCCAATACTGTTC 61.096 60.000 5.70 0.00 35.37 3.18
3474 6367 1.077716 GCGGGCTCCCAATACTGTT 60.078 57.895 5.70 0.00 35.37 3.16
3475 6368 2.590092 GCGGGCTCCCAATACTGT 59.410 61.111 5.70 0.00 35.37 3.55
3476 6369 2.203209 GGCGGGCTCCCAATACTG 60.203 66.667 5.70 0.00 35.37 2.74
3477 6370 2.690881 TGGCGGGCTCCCAATACT 60.691 61.111 5.70 0.00 35.37 2.12
3478 6371 2.516225 GTGGCGGGCTCCCAATAC 60.516 66.667 5.70 0.00 33.39 1.89
3479 6372 3.804329 GGTGGCGGGCTCCCAATA 61.804 66.667 11.25 0.00 33.39 1.90
3484 6377 4.796495 ATTTCGGTGGCGGGCTCC 62.796 66.667 12.20 12.20 0.00 4.70
3485 6378 3.508840 CATTTCGGTGGCGGGCTC 61.509 66.667 2.38 0.00 0.00 4.70
3492 6385 0.596082 AAGTTTCGCCATTTCGGTGG 59.404 50.000 0.00 0.00 46.14 4.61
3494 6387 0.596082 CCAAGTTTCGCCATTTCGGT 59.404 50.000 0.00 0.00 36.97 4.69
3495 6388 0.732538 GCCAAGTTTCGCCATTTCGG 60.733 55.000 0.00 0.00 38.11 4.30
3496 6389 0.039617 TGCCAAGTTTCGCCATTTCG 60.040 50.000 0.00 0.00 0.00 3.46
3497 6390 1.669795 CCTGCCAAGTTTCGCCATTTC 60.670 52.381 0.00 0.00 0.00 2.17
3498 6391 0.318120 CCTGCCAAGTTTCGCCATTT 59.682 50.000 0.00 0.00 0.00 2.32
3499 6392 1.535204 CCCTGCCAAGTTTCGCCATT 61.535 55.000 0.00 0.00 0.00 3.16
3500 6393 1.978617 CCCTGCCAAGTTTCGCCAT 60.979 57.895 0.00 0.00 0.00 4.40
3501 6394 2.597217 CCCTGCCAAGTTTCGCCA 60.597 61.111 0.00 0.00 0.00 5.69
3502 6395 4.056125 GCCCTGCCAAGTTTCGCC 62.056 66.667 0.00 0.00 0.00 5.54
3503 6396 1.312371 TATGCCCTGCCAAGTTTCGC 61.312 55.000 0.00 0.00 0.00 4.70
3504 6397 1.392589 ATATGCCCTGCCAAGTTTCG 58.607 50.000 0.00 0.00 0.00 3.46
3505 6398 4.207165 TCTAATATGCCCTGCCAAGTTTC 58.793 43.478 0.00 0.00 0.00 2.78
3506 6399 4.210331 CTCTAATATGCCCTGCCAAGTTT 58.790 43.478 0.00 0.00 0.00 2.66
3507 6400 3.435601 CCTCTAATATGCCCTGCCAAGTT 60.436 47.826 0.00 0.00 0.00 2.66
3508 6401 2.107204 CCTCTAATATGCCCTGCCAAGT 59.893 50.000 0.00 0.00 0.00 3.16
3509 6402 2.373169 TCCTCTAATATGCCCTGCCAAG 59.627 50.000 0.00 0.00 0.00 3.61
3510 6403 2.417652 TCCTCTAATATGCCCTGCCAA 58.582 47.619 0.00 0.00 0.00 4.52
3511 6404 2.116869 TCCTCTAATATGCCCTGCCA 57.883 50.000 0.00 0.00 0.00 4.92
3512 6405 5.372373 GAATATCCTCTAATATGCCCTGCC 58.628 45.833 0.00 0.00 0.00 4.85
3513 6406 5.053145 CGAATATCCTCTAATATGCCCTGC 58.947 45.833 0.00 0.00 0.00 4.85
3514 6407 5.453903 CCCGAATATCCTCTAATATGCCCTG 60.454 48.000 0.00 0.00 0.00 4.45
3515 6408 4.656112 CCCGAATATCCTCTAATATGCCCT 59.344 45.833 0.00 0.00 0.00 5.19
3516 6409 4.743955 GCCCGAATATCCTCTAATATGCCC 60.744 50.000 0.00 0.00 0.00 5.36
3517 6410 4.381411 GCCCGAATATCCTCTAATATGCC 58.619 47.826 0.00 0.00 0.00 4.40
3518 6411 4.051922 CGCCCGAATATCCTCTAATATGC 58.948 47.826 0.00 0.00 0.00 3.14
3519 6412 4.501571 CCCGCCCGAATATCCTCTAATATG 60.502 50.000 0.00 0.00 0.00 1.78
3520 6413 3.641906 CCCGCCCGAATATCCTCTAATAT 59.358 47.826 0.00 0.00 0.00 1.28
3521 6414 3.028850 CCCGCCCGAATATCCTCTAATA 58.971 50.000 0.00 0.00 0.00 0.98
3522 6415 1.831736 CCCGCCCGAATATCCTCTAAT 59.168 52.381 0.00 0.00 0.00 1.73
3523 6416 1.263356 CCCGCCCGAATATCCTCTAA 58.737 55.000 0.00 0.00 0.00 2.10
3524 6417 0.113776 ACCCGCCCGAATATCCTCTA 59.886 55.000 0.00 0.00 0.00 2.43
3525 6418 1.152312 ACCCGCCCGAATATCCTCT 60.152 57.895 0.00 0.00 0.00 3.69
3526 6419 1.004918 CACCCGCCCGAATATCCTC 60.005 63.158 0.00 0.00 0.00 3.71
3527 6420 2.516888 CCACCCGCCCGAATATCCT 61.517 63.158 0.00 0.00 0.00 3.24
3528 6421 2.032071 CCACCCGCCCGAATATCC 59.968 66.667 0.00 0.00 0.00 2.59
3529 6422 1.597027 CACCACCCGCCCGAATATC 60.597 63.158 0.00 0.00 0.00 1.63
3530 6423 2.508928 CACCACCCGCCCGAATAT 59.491 61.111 0.00 0.00 0.00 1.28
3531 6424 3.788145 CCACCACCCGCCCGAATA 61.788 66.667 0.00 0.00 0.00 1.75
3535 6428 4.849310 CATACCACCACCCGCCCG 62.849 72.222 0.00 0.00 0.00 6.13
3536 6429 4.499633 CCATACCACCACCCGCCC 62.500 72.222 0.00 0.00 0.00 6.13
3537 6430 1.412453 TATCCATACCACCACCCGCC 61.412 60.000 0.00 0.00 0.00 6.13
3538 6431 0.470766 TTATCCATACCACCACCCGC 59.529 55.000 0.00 0.00 0.00 6.13
3539 6432 3.502123 AATTATCCATACCACCACCCG 57.498 47.619 0.00 0.00 0.00 5.28
3540 6433 7.462571 GATAAAATTATCCATACCACCACCC 57.537 40.000 2.37 0.00 34.77 4.61
3553 6446 7.667219 TGGAGGCAGATTCTGGATAAAATTATC 59.333 37.037 15.28 4.86 39.01 1.75
3554 6447 7.449704 GTGGAGGCAGATTCTGGATAAAATTAT 59.550 37.037 15.28 0.00 31.21 1.28
3555 6448 6.772716 GTGGAGGCAGATTCTGGATAAAATTA 59.227 38.462 15.28 0.00 31.21 1.40
3556 6449 5.595952 GTGGAGGCAGATTCTGGATAAAATT 59.404 40.000 15.28 0.00 31.21 1.82
3557 6450 5.136105 GTGGAGGCAGATTCTGGATAAAAT 58.864 41.667 15.28 0.00 31.21 1.82
3558 6451 4.526970 GTGGAGGCAGATTCTGGATAAAA 58.473 43.478 15.28 0.00 31.21 1.52
3559 6452 3.117888 GGTGGAGGCAGATTCTGGATAAA 60.118 47.826 15.28 0.00 31.21 1.40
3560 6453 2.439507 GGTGGAGGCAGATTCTGGATAA 59.560 50.000 15.28 0.00 31.21 1.75
3561 6454 2.050144 GGTGGAGGCAGATTCTGGATA 58.950 52.381 15.28 0.00 31.21 2.59
3562 6455 0.842635 GGTGGAGGCAGATTCTGGAT 59.157 55.000 15.28 0.00 31.21 3.41
3563 6456 1.617018 CGGTGGAGGCAGATTCTGGA 61.617 60.000 15.28 0.00 31.21 3.86
3564 6457 1.153289 CGGTGGAGGCAGATTCTGG 60.153 63.158 15.28 0.00 31.21 3.86
3565 6458 1.153289 CCGGTGGAGGCAGATTCTG 60.153 63.158 9.40 9.40 34.12 3.02
3566 6459 0.325296 TACCGGTGGAGGCAGATTCT 60.325 55.000 19.93 0.00 33.69 2.40
3567 6460 0.179081 GTACCGGTGGAGGCAGATTC 60.179 60.000 19.93 0.00 33.69 2.52
3568 6461 0.907704 TGTACCGGTGGAGGCAGATT 60.908 55.000 19.93 0.00 33.69 2.40
3569 6462 1.305802 TGTACCGGTGGAGGCAGAT 60.306 57.895 19.93 0.00 33.69 2.90
3570 6463 2.118732 TGTACCGGTGGAGGCAGA 59.881 61.111 19.93 0.00 33.69 4.26
3571 6464 1.899437 ATGTGTACCGGTGGAGGCAG 61.899 60.000 19.93 0.00 33.69 4.85
3625 6555 4.134563 ACTGGTGTTTTGGTGTATCTCAC 58.865 43.478 0.00 0.00 45.47 3.51
3658 6588 1.069022 CATTCAGGTGCAAGGTTGTCG 60.069 52.381 0.00 0.00 0.00 4.35
3663 6593 0.251922 ATGCCATTCAGGTGCAAGGT 60.252 50.000 0.00 0.00 38.69 3.50
3677 6611 2.230992 CGGAAAGTTTGGAATGATGCCA 59.769 45.455 0.00 0.00 0.00 4.92
3730 6664 5.704053 TCTTTCTTTCGGTTCCTGAATAACC 59.296 40.000 0.00 0.00 42.52 2.85
3744 6678 7.298122 TGCTGCTAGTATTTTTCTTTCTTTCG 58.702 34.615 0.00 0.00 0.00 3.46
3750 6684 5.474876 ACTGCTGCTGCTAGTATTTTTCTTT 59.525 36.000 17.00 0.00 40.48 2.52
3755 6689 3.873952 GCTACTGCTGCTGCTAGTATTTT 59.126 43.478 17.00 0.10 40.48 1.82
3806 7802 4.437239 ACGGAATCTAAATCTGCTGACTG 58.563 43.478 0.00 0.00 0.00 3.51
3957 7975 0.034059 GCCACTCCTCCATCATACGG 59.966 60.000 0.00 0.00 0.00 4.02
4014 8044 2.672651 TTCAGCCGTCGTACCCGA 60.673 61.111 1.43 0.00 41.73 5.14
4065 8180 3.147595 CGCCGTCTCCCTCCATCA 61.148 66.667 0.00 0.00 0.00 3.07
4316 9689 0.318360 GCACCGCACCTTGTTTTACC 60.318 55.000 0.00 0.00 0.00 2.85
4317 9690 0.666374 AGCACCGCACCTTGTTTTAC 59.334 50.000 0.00 0.00 0.00 2.01
4318 9691 1.335496 GAAGCACCGCACCTTGTTTTA 59.665 47.619 0.00 0.00 0.00 1.52
4348 9721 0.390866 CACATGAAGAGCTGGCGTCT 60.391 55.000 0.00 0.00 0.00 4.18
4349 9722 1.364626 CCACATGAAGAGCTGGCGTC 61.365 60.000 0.00 0.00 0.00 5.19
4350 9723 1.376424 CCACATGAAGAGCTGGCGT 60.376 57.895 0.00 0.00 0.00 5.68
4352 9725 1.471684 CTTTCCACATGAAGAGCTGGC 59.528 52.381 0.00 0.00 33.63 4.85
4353 9726 2.089980 CCTTTCCACATGAAGAGCTGG 58.910 52.381 0.00 0.00 33.63 4.85
4355 9728 4.851639 ATACCTTTCCACATGAAGAGCT 57.148 40.909 0.00 0.00 33.63 4.09
4357 9730 8.206867 TCTTGATATACCTTTCCACATGAAGAG 58.793 37.037 0.00 0.00 33.63 2.85
4358 9731 8.089625 TCTTGATATACCTTTCCACATGAAGA 57.910 34.615 0.00 0.00 33.63 2.87
4382 9794 7.807907 CACCATTAAACGGCCTGATATATTTTC 59.192 37.037 0.00 0.00 0.00 2.29
4414 9946 4.885907 AGTGATCCATCAACCATCATTCAC 59.114 41.667 0.00 0.00 38.75 3.18
4486 10023 3.967326 TGCCAATGCTATGTAGGAGTAGT 59.033 43.478 0.00 0.00 38.71 2.73
4487 10024 4.039730 AGTGCCAATGCTATGTAGGAGTAG 59.960 45.833 0.00 0.00 38.71 2.57
4492 10029 4.273480 GTGTTAGTGCCAATGCTATGTAGG 59.727 45.833 0.00 0.00 38.71 3.18
4606 10165 0.390866 ACACGAAGCTGCAGATGAGG 60.391 55.000 20.43 6.77 0.00 3.86
4676 10235 1.558756 CTTGGAGAAGACCCAGCAGAT 59.441 52.381 0.00 0.00 34.77 2.90
4678 10237 0.689623 ACTTGGAGAAGACCCAGCAG 59.310 55.000 0.00 0.00 34.77 4.24
4867 10426 2.686106 ATCCCCCAGTACGCCGTT 60.686 61.111 0.00 0.00 0.00 4.44
5077 10636 1.447838 GACGTGCGTGATGGTGGAT 60.448 57.895 0.67 0.00 0.00 3.41
5166 10753 5.659463 TCTTTCAGTTCAAAAACCACATGG 58.341 37.500 0.00 0.00 42.17 3.66
5330 10924 9.844221 GACACTGTCATCGACAATACTGTCAGT 62.844 44.444 10.99 10.99 42.26 3.41
5378 10973 0.035915 GGAGCTGAACCTGGTCCTTC 60.036 60.000 0.00 0.00 43.40 3.46
5399 10994 2.121506 AAGAGGAGGCCCCACCAA 60.122 61.111 12.24 0.00 43.14 3.67
5519 11117 3.181489 GCAGAAATCATGAAAGAGCAGGG 60.181 47.826 0.00 0.00 0.00 4.45
6137 11774 1.646447 AGTATCCACCTCTGACTGGGA 59.354 52.381 0.00 0.00 0.00 4.37
6209 11846 3.472652 TGAGTTGTAATTCACGGCTGTT 58.527 40.909 0.00 0.00 0.00 3.16
6347 11984 1.414181 AGTGTGAAGTACAGCAGCACT 59.586 47.619 0.00 6.53 40.69 4.40
6407 12044 1.190833 CCAGAGGACAGTGCTCACCT 61.191 60.000 22.86 0.81 37.29 4.00
6510 12152 5.244785 TGACTAATCTTGTAGCTGTACCG 57.755 43.478 0.00 0.00 0.00 4.02
6547 12201 5.043248 TGATCATGCTATTACACTCACACG 58.957 41.667 0.00 0.00 0.00 4.49
6580 12234 5.365619 TCTCTTTTGGTGGAGAAGTACAAC 58.634 41.667 0.00 0.00 35.91 3.32
6588 12242 2.564947 GCTCTCTCTCTTTTGGTGGAGA 59.435 50.000 0.00 0.00 37.12 3.71
6649 12317 3.064820 TGTCTTTTCTCTTTTGCGTGGAC 59.935 43.478 0.00 0.00 0.00 4.02
6829 12519 5.277393 GCTATCACTGAATGCTGTTGATGAG 60.277 44.000 0.00 0.00 0.00 2.90
6888 12579 6.565234 TGTGAAGCCAATAAGAAACGAAAAA 58.435 32.000 0.00 0.00 0.00 1.94
6903 12594 7.492020 GCAAATCATAAATATGTTGTGAAGCCA 59.508 33.333 6.04 0.00 35.26 4.75
6910 12601 7.321908 TGCACTGCAAATCATAAATATGTTGT 58.678 30.769 0.00 0.00 34.76 3.32
6958 12649 9.480053 CCATTTAGTTCAATTGAAACAATCTGT 57.520 29.630 22.07 4.04 35.58 3.41
6978 12669 4.141287 CGGGATTAATCTGGTGCCATTTA 58.859 43.478 14.95 0.00 0.00 1.40
6997 12688 5.179045 AGTCGATTGTAATGTAGTACGGG 57.821 43.478 0.00 0.00 0.00 5.28
7036 12730 1.219393 CTCGCCTCTTCCCTGTTCC 59.781 63.158 0.00 0.00 0.00 3.62
7037 12731 1.219393 CCTCGCCTCTTCCCTGTTC 59.781 63.158 0.00 0.00 0.00 3.18
7466 13172 0.805711 GCCTTTCTCTCTCGCTGCTC 60.806 60.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.