Multiple sequence alignment - TraesCS6B01G293000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G293000 chr6B 100.000 2445 0 0 1 2445 526717724 526720168 0.000000e+00 4516
1 TraesCS6B01G293000 chr6A 93.780 1672 61 18 803 2445 490493478 490495135 0.000000e+00 2471
2 TraesCS6B01G293000 chr6A 83.824 680 85 15 105 766 490492802 490493474 7.420000e-175 623
3 TraesCS6B01G293000 chr6A 84.066 546 76 10 1857 2396 490836347 490836887 1.300000e-142 516
4 TraesCS6B01G293000 chr6A 92.233 103 4 1 1 103 490492674 490492772 2.530000e-30 143
5 TraesCS6B01G293000 chr6D 93.996 1649 53 18 813 2445 352357600 352355982 0.000000e+00 2455
6 TraesCS6B01G293000 chr6D 88.665 794 56 19 1 766 352358399 352357612 0.000000e+00 937
7 TraesCS6B01G293000 chr2A 87.361 989 83 24 1482 2445 763369745 763368774 0.000000e+00 1096
8 TraesCS6B01G293000 chr2B 86.075 991 94 25 1482 2445 797627777 797626804 0.000000e+00 1026
9 TraesCS6B01G293000 chrUn 85.565 672 82 12 1784 2445 84014914 84015580 0.000000e+00 689
10 TraesCS6B01G293000 chr7D 85.097 671 87 10 1784 2445 59732202 59732868 0.000000e+00 673


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G293000 chr6B 526717724 526720168 2444 False 4516 4516 100.000000 1 2445 1 chr6B.!!$F1 2444
1 TraesCS6B01G293000 chr6A 490492674 490495135 2461 False 1079 2471 89.945667 1 2445 3 chr6A.!!$F2 2444
2 TraesCS6B01G293000 chr6A 490836347 490836887 540 False 516 516 84.066000 1857 2396 1 chr6A.!!$F1 539
3 TraesCS6B01G293000 chr6D 352355982 352358399 2417 True 1696 2455 91.330500 1 2445 2 chr6D.!!$R1 2444
4 TraesCS6B01G293000 chr2A 763368774 763369745 971 True 1096 1096 87.361000 1482 2445 1 chr2A.!!$R1 963
5 TraesCS6B01G293000 chr2B 797626804 797627777 973 True 1026 1026 86.075000 1482 2445 1 chr2B.!!$R1 963
6 TraesCS6B01G293000 chrUn 84014914 84015580 666 False 689 689 85.565000 1784 2445 1 chrUn.!!$F1 661
7 TraesCS6B01G293000 chr7D 59732202 59732868 666 False 673 673 85.097000 1784 2445 1 chr7D.!!$F1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 516 0.026285 GCACGACGTGTAATGCCATC 59.974 55.0 27.32 5.36 35.75 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1608 2.224314 GGAGAACAGTAACACAAGCTGC 59.776 50.0 0.0 0.0 33.87 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 230 3.730662 CGAAACTGTAATGCCGAAATGGG 60.731 47.826 0.00 0.00 38.63 4.00
251 285 3.973206 TTCCTCTTGGAAGTATGCGAA 57.027 42.857 0.00 0.00 46.57 4.70
259 293 1.066430 GGAAGTATGCGAACCCAGACA 60.066 52.381 0.00 0.00 29.67 3.41
265 299 0.745128 TGCGAACCCAGACAAACGTT 60.745 50.000 0.00 0.00 0.00 3.99
266 300 0.041576 GCGAACCCAGACAAACGTTC 60.042 55.000 0.00 0.00 32.97 3.95
278 312 8.026607 CCCAGACAAACGTTCAATAAATTACAT 58.973 33.333 0.00 0.00 0.00 2.29
310 344 2.689471 GTTCAAGCCATGGTGCATCATA 59.311 45.455 13.21 0.00 0.00 2.15
322 356 4.216042 TGGTGCATCATATTTATCGGCAAG 59.784 41.667 0.00 0.00 0.00 4.01
357 397 2.094545 CCTCTGGCAAAGGGAAATTTCG 60.095 50.000 11.95 0.00 0.00 3.46
367 407 3.891049 AGGGAAATTTCGAGGATTCAGG 58.109 45.455 11.95 0.00 0.00 3.86
385 426 2.813754 CAGGCGTTTCAGATTTTCTCCA 59.186 45.455 0.00 0.00 0.00 3.86
395 436 2.954318 AGATTTTCTCCAATGGCGATGG 59.046 45.455 0.00 2.15 39.41 3.51
409 450 0.861837 CGATGGCAGCTCCGAAATAC 59.138 55.000 0.00 0.00 37.80 1.89
411 452 2.288213 CGATGGCAGCTCCGAAATACTA 60.288 50.000 0.00 0.00 37.80 1.82
412 453 2.890808 TGGCAGCTCCGAAATACTAG 57.109 50.000 0.00 0.00 37.80 2.57
413 454 2.108168 TGGCAGCTCCGAAATACTAGT 58.892 47.619 0.00 0.00 37.80 2.57
414 455 2.500098 TGGCAGCTCCGAAATACTAGTT 59.500 45.455 0.00 0.00 37.80 2.24
415 456 3.702548 TGGCAGCTCCGAAATACTAGTTA 59.297 43.478 0.00 0.00 37.80 2.24
416 457 4.202121 TGGCAGCTCCGAAATACTAGTTAG 60.202 45.833 0.00 0.00 37.80 2.34
418 459 4.977347 GCAGCTCCGAAATACTAGTTAGAC 59.023 45.833 0.00 0.00 0.00 2.59
419 460 5.450137 GCAGCTCCGAAATACTAGTTAGACA 60.450 44.000 0.00 0.00 0.00 3.41
420 461 6.561614 CAGCTCCGAAATACTAGTTAGACAA 58.438 40.000 0.00 0.00 0.00 3.18
421 462 7.033791 CAGCTCCGAAATACTAGTTAGACAAA 58.966 38.462 0.00 0.00 0.00 2.83
423 464 8.910944 AGCTCCGAAATACTAGTTAGACAAATA 58.089 33.333 0.00 0.00 0.00 1.40
427 482 9.028185 CCGAAATACTAGTTAGACAAATACCAC 57.972 37.037 0.00 0.00 0.00 4.16
435 490 0.325602 GACAAATACCACCGGGGACA 59.674 55.000 4.41 0.00 41.15 4.02
458 513 0.179225 CAAGCACGACGTGTAATGCC 60.179 55.000 27.32 10.95 38.92 4.40
459 514 0.601576 AAGCACGACGTGTAATGCCA 60.602 50.000 27.32 0.00 38.92 4.92
460 515 0.391130 AGCACGACGTGTAATGCCAT 60.391 50.000 27.32 3.15 38.92 4.40
461 516 0.026285 GCACGACGTGTAATGCCATC 59.974 55.000 27.32 5.36 35.75 3.51
478 533 4.202172 TGCCATCATCATGCAACCAAATAG 60.202 41.667 0.00 0.00 0.00 1.73
486 541 6.839124 TCATGCAACCAAATAGAACAAGAT 57.161 33.333 0.00 0.00 0.00 2.40
510 565 5.160607 TCCTAAATACCAATGGATAGCCG 57.839 43.478 6.16 0.00 36.79 5.52
591 647 0.840722 GGACCTGGGGAGTGGAAGAA 60.841 60.000 0.00 0.00 0.00 2.52
601 657 2.900546 GGAGTGGAAGAAGAGGAACTGA 59.099 50.000 0.00 0.00 41.55 3.41
618 674 4.162690 ATTCTCACCTCCGGCGGC 62.163 66.667 23.83 0.00 0.00 6.53
657 713 3.145375 CTCCGACGACGAGCTCGAG 62.145 68.421 40.58 32.09 46.14 4.04
766 825 1.460699 GGAAACTTGGAGGGTGGCT 59.539 57.895 0.00 0.00 0.00 4.75
767 826 0.895559 GGAAACTTGGAGGGTGGCTG 60.896 60.000 0.00 0.00 0.00 4.85
768 827 0.895559 GAAACTTGGAGGGTGGCTGG 60.896 60.000 0.00 0.00 0.00 4.85
769 828 3.513750 AACTTGGAGGGTGGCTGGC 62.514 63.158 0.00 0.00 0.00 4.85
789 848 3.711937 ACGGGGCTACGTTTTCTTT 57.288 47.368 0.00 0.00 46.25 2.52
790 849 1.516161 ACGGGGCTACGTTTTCTTTC 58.484 50.000 0.00 0.00 46.25 2.62
791 850 1.071228 ACGGGGCTACGTTTTCTTTCT 59.929 47.619 0.00 0.00 46.25 2.52
792 851 1.730612 CGGGGCTACGTTTTCTTTCTC 59.269 52.381 0.00 0.00 0.00 2.87
793 852 2.612221 CGGGGCTACGTTTTCTTTCTCT 60.612 50.000 0.00 0.00 0.00 3.10
794 853 3.001414 GGGGCTACGTTTTCTTTCTCTC 58.999 50.000 0.00 0.00 0.00 3.20
795 854 3.306849 GGGGCTACGTTTTCTTTCTCTCT 60.307 47.826 0.00 0.00 0.00 3.10
796 855 3.927758 GGGCTACGTTTTCTTTCTCTCTC 59.072 47.826 0.00 0.00 0.00 3.20
797 856 4.322123 GGGCTACGTTTTCTTTCTCTCTCT 60.322 45.833 0.00 0.00 0.00 3.10
798 857 4.623595 GGCTACGTTTTCTTTCTCTCTCTG 59.376 45.833 0.00 0.00 0.00 3.35
799 858 5.462405 GCTACGTTTTCTTTCTCTCTCTGA 58.538 41.667 0.00 0.00 0.00 3.27
800 859 5.571357 GCTACGTTTTCTTTCTCTCTCTGAG 59.429 44.000 0.00 0.00 43.96 3.35
801 860 4.877282 ACGTTTTCTTTCTCTCTCTGAGG 58.123 43.478 4.59 0.00 42.86 3.86
896 955 0.805711 GCCTTTCTCTCTCGCTGCTC 60.806 60.000 0.00 0.00 0.00 4.26
1325 1396 1.219393 CCTCGCCTCTTCCCTGTTC 59.781 63.158 0.00 0.00 0.00 3.18
1326 1397 1.219393 CTCGCCTCTTCCCTGTTCC 59.781 63.158 0.00 0.00 0.00 3.62
1365 1439 5.179045 AGTCGATTGTAATGTAGTACGGG 57.821 43.478 0.00 0.00 0.00 5.28
1384 1458 4.141287 CGGGATTAATCTGGTGCCATTTA 58.859 43.478 14.95 0.00 0.00 1.40
1404 1478 9.480053 CCATTTAGTTCAATTGAAACAATCTGT 57.520 29.630 22.07 4.04 35.58 3.41
1452 1526 7.321908 TGCACTGCAAATCATAAATATGTTGT 58.678 30.769 0.00 0.00 34.76 3.32
1459 1533 7.492020 GCAAATCATAAATATGTTGTGAAGCCA 59.508 33.333 6.04 0.00 35.26 4.75
1474 1548 6.565234 TGTGAAGCCAATAAGAAACGAAAAA 58.435 32.000 0.00 0.00 0.00 1.94
1533 1608 5.277393 GCTATCACTGAATGCTGTTGATGAG 60.277 44.000 0.00 0.00 0.00 2.90
1575 1659 4.768448 TCCAATTCAATTGAGATGCACAGT 59.232 37.500 11.98 0.00 42.83 3.55
1576 1660 5.945191 TCCAATTCAATTGAGATGCACAGTA 59.055 36.000 11.98 0.00 42.83 2.74
1646 1732 4.707030 TTCCAGAACTAGCATGCATTTG 57.293 40.909 21.98 8.97 0.00 2.32
1647 1733 3.689347 TCCAGAACTAGCATGCATTTGT 58.311 40.909 21.98 9.63 0.00 2.83
1648 1734 3.441222 TCCAGAACTAGCATGCATTTGTG 59.559 43.478 21.98 16.50 0.00 3.33
1650 1738 4.321452 CCAGAACTAGCATGCATTTGTGTT 60.321 41.667 21.98 13.89 0.00 3.32
1713 1812 3.064820 TGTCTTTTCTCTTTTGCGTGGAC 59.935 43.478 0.00 0.00 0.00 4.02
1774 1887 2.564947 GCTCTCTCTCTTTTGGTGGAGA 59.435 50.000 0.00 0.00 37.12 3.71
1782 1895 5.365619 TCTCTTTTGGTGGAGAAGTACAAC 58.634 41.667 0.00 0.00 35.91 3.32
1815 1928 5.043248 TGATCATGCTATTACACTCACACG 58.957 41.667 0.00 0.00 0.00 4.49
1852 1976 5.244785 TGACTAATCTTGTAGCTGTACCG 57.755 43.478 0.00 0.00 0.00 4.02
1955 2085 1.190833 CCAGAGGACAGTGCTCACCT 61.191 60.000 22.86 0.81 37.29 4.00
2015 2145 1.414181 AGTGTGAAGTACAGCAGCACT 59.586 47.619 0.00 6.53 40.69 4.40
2153 2283 3.472652 TGAGTTGTAATTCACGGCTGTT 58.527 40.909 0.00 0.00 0.00 3.16
2225 2355 1.646447 AGTATCCACCTCTGACTGGGA 59.354 52.381 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 230 9.413048 TCCGGTTTACATTTCATTAATTTTGAC 57.587 29.630 0.00 0.00 0.00 3.18
239 273 1.066430 TGTCTGGGTTCGCATACTTCC 60.066 52.381 6.85 0.00 0.00 3.46
249 283 3.982576 ATTGAACGTTTGTCTGGGTTC 57.017 42.857 0.46 0.00 39.29 3.62
251 285 6.399639 AATTTATTGAACGTTTGTCTGGGT 57.600 33.333 0.46 0.00 0.00 4.51
278 312 3.701205 TGGCTTGAACTGCTGAGAATA 57.299 42.857 0.00 0.00 0.00 1.75
284 318 0.242825 CACCATGGCTTGAACTGCTG 59.757 55.000 13.04 0.00 0.00 4.41
310 344 7.566760 TCAATGTGTATTCTTGCCGATAAAT 57.433 32.000 0.00 0.00 0.00 1.40
322 356 4.454678 TGCCAGAGGATCAATGTGTATTC 58.545 43.478 0.00 0.00 37.82 1.75
357 397 2.386661 TCTGAAACGCCTGAATCCTC 57.613 50.000 0.00 0.00 0.00 3.71
367 407 4.168760 CCATTGGAGAAAATCTGAAACGC 58.831 43.478 0.00 0.00 0.00 4.84
385 426 2.517875 GGAGCTGCCATCGCCATT 60.518 61.111 0.00 0.00 36.34 3.16
395 436 4.977347 GTCTAACTAGTATTTCGGAGCTGC 59.023 45.833 0.00 0.00 0.00 5.25
409 450 4.442472 CCCCGGTGGTATTTGTCTAACTAG 60.442 50.000 0.00 0.00 0.00 2.57
411 452 2.237893 CCCCGGTGGTATTTGTCTAACT 59.762 50.000 0.00 0.00 0.00 2.24
412 453 2.236893 TCCCCGGTGGTATTTGTCTAAC 59.763 50.000 0.00 0.00 34.77 2.34
413 454 2.236893 GTCCCCGGTGGTATTTGTCTAA 59.763 50.000 0.00 0.00 34.77 2.10
414 455 1.832998 GTCCCCGGTGGTATTTGTCTA 59.167 52.381 0.00 0.00 34.77 2.59
415 456 0.616891 GTCCCCGGTGGTATTTGTCT 59.383 55.000 0.00 0.00 34.77 3.41
416 457 0.325602 TGTCCCCGGTGGTATTTGTC 59.674 55.000 0.00 0.00 34.77 3.18
418 459 0.037017 TGTGTCCCCGGTGGTATTTG 59.963 55.000 0.00 0.00 34.77 2.32
419 460 0.326927 CTGTGTCCCCGGTGGTATTT 59.673 55.000 0.00 0.00 34.77 1.40
420 461 1.988015 CTGTGTCCCCGGTGGTATT 59.012 57.895 0.00 0.00 34.77 1.89
421 462 2.666098 GCTGTGTCCCCGGTGGTAT 61.666 63.158 0.00 0.00 34.77 2.73
427 482 4.641645 TGCTTGCTGTGTCCCCGG 62.642 66.667 0.00 0.00 0.00 5.73
435 490 0.528901 TTACACGTCGTGCTTGCTGT 60.529 50.000 24.80 6.46 36.98 4.40
458 513 6.566141 TGTTCTATTTGGTTGCATGATGATG 58.434 36.000 0.00 0.00 0.00 3.07
459 514 6.778834 TGTTCTATTTGGTTGCATGATGAT 57.221 33.333 0.00 0.00 0.00 2.45
460 515 6.433716 TCTTGTTCTATTTGGTTGCATGATGA 59.566 34.615 0.00 0.00 0.00 2.92
461 516 6.623486 TCTTGTTCTATTTGGTTGCATGATG 58.377 36.000 0.00 0.00 0.00 3.07
478 533 8.966868 TCCATTGGTATTTAGGAAATCTTGTTC 58.033 33.333 1.86 0.00 32.38 3.18
486 541 6.001460 CGGCTATCCATTGGTATTTAGGAAA 58.999 40.000 1.86 0.00 31.17 3.13
502 557 4.457949 TGTTCCTTTTCTTTTCGGCTATCC 59.542 41.667 0.00 0.00 0.00 2.59
510 565 6.803807 CAGATCGGAATGTTCCTTTTCTTTTC 59.196 38.462 9.90 0.00 45.33 2.29
536 592 3.471680 GCCTGGAGTAATGTGAGGATTC 58.528 50.000 0.00 0.00 0.00 2.52
657 713 1.680989 CCCATTTCCCGTCCCCAAC 60.681 63.158 0.00 0.00 0.00 3.77
767 826 4.747529 AAACGTAGCCCCGTCGCC 62.748 66.667 0.00 0.00 40.85 5.54
768 827 2.733671 GAAAACGTAGCCCCGTCGC 61.734 63.158 0.00 0.00 40.85 5.19
769 828 0.668401 AAGAAAACGTAGCCCCGTCG 60.668 55.000 0.00 0.00 40.85 5.12
770 829 1.462283 GAAAGAAAACGTAGCCCCGTC 59.538 52.381 0.00 0.00 40.85 4.79
771 830 1.071228 AGAAAGAAAACGTAGCCCCGT 59.929 47.619 0.00 0.00 44.23 5.28
772 831 1.730612 GAGAAAGAAAACGTAGCCCCG 59.269 52.381 0.00 0.00 0.00 5.73
773 832 3.001414 GAGAGAAAGAAAACGTAGCCCC 58.999 50.000 0.00 0.00 0.00 5.80
774 833 3.927758 GAGAGAGAAAGAAAACGTAGCCC 59.072 47.826 0.00 0.00 0.00 5.19
775 834 4.623595 CAGAGAGAGAAAGAAAACGTAGCC 59.376 45.833 0.00 0.00 0.00 3.93
776 835 5.462405 TCAGAGAGAGAAAGAAAACGTAGC 58.538 41.667 0.00 0.00 0.00 3.58
790 849 0.738389 GTCGCTTCCCTCAGAGAGAG 59.262 60.000 0.00 0.00 44.31 3.20
791 850 1.027255 CGTCGCTTCCCTCAGAGAGA 61.027 60.000 0.00 0.00 0.00 3.10
792 851 1.309499 ACGTCGCTTCCCTCAGAGAG 61.309 60.000 0.00 0.00 0.00 3.20
793 852 1.303398 ACGTCGCTTCCCTCAGAGA 60.303 57.895 0.00 0.00 0.00 3.10
794 853 1.153939 CACGTCGCTTCCCTCAGAG 60.154 63.158 0.00 0.00 0.00 3.35
795 854 2.636412 CCACGTCGCTTCCCTCAGA 61.636 63.158 0.00 0.00 0.00 3.27
796 855 2.125912 CCACGTCGCTTCCCTCAG 60.126 66.667 0.00 0.00 0.00 3.35
797 856 4.373116 GCCACGTCGCTTCCCTCA 62.373 66.667 0.00 0.00 0.00 3.86
798 857 3.591254 AAGCCACGTCGCTTCCCTC 62.591 63.158 15.01 0.00 46.06 4.30
799 858 3.626924 AAGCCACGTCGCTTCCCT 61.627 61.111 15.01 0.00 46.06 4.20
896 955 2.770048 ATGGAGGCGGAAGGGAGG 60.770 66.667 0.00 0.00 0.00 4.30
936 998 2.670592 TGGAACGAGAGACGCCGA 60.671 61.111 0.00 0.00 46.94 5.54
937 999 2.202492 CTGGAACGAGAGACGCCG 60.202 66.667 0.00 0.00 46.94 6.46
939 1001 2.876645 CGCTGGAACGAGAGACGC 60.877 66.667 0.00 0.00 46.94 5.19
941 1003 2.600122 ATCGCGCTGGAACGAGAGAC 62.600 60.000 5.56 0.00 44.87 3.36
943 1005 0.930742 GTATCGCGCTGGAACGAGAG 60.931 60.000 5.56 0.00 44.87 3.20
944 1006 1.063649 GTATCGCGCTGGAACGAGA 59.936 57.895 5.56 0.00 45.70 4.04
945 1007 1.202973 CTGTATCGCGCTGGAACGAG 61.203 60.000 5.56 0.00 42.31 4.18
1233 1301 1.684734 GTTGAGGAGGCCGAGGGTA 60.685 63.158 0.00 0.00 0.00 3.69
1312 1383 2.356227 GCTAAAGGGAACAGGGAAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
1341 1412 5.220912 CCCGTACTACATTACAATCGACTCA 60.221 44.000 0.00 0.00 0.00 3.41
1365 1439 7.333528 TGAACTAAATGGCACCAGATTAATC 57.666 36.000 7.41 7.41 0.00 1.75
1384 1458 5.754890 GGCAACAGATTGTTTCAATTGAACT 59.245 36.000 20.35 10.95 38.77 3.01
1404 1478 3.362706 ACATAGAGGAACGACTAGGCAA 58.637 45.455 0.00 0.00 30.55 4.52
1452 1526 7.206687 ACATTTTTCGTTTCTTATTGGCTTCA 58.793 30.769 0.00 0.00 0.00 3.02
1459 1533 5.764131 TGGCGACATTTTTCGTTTCTTATT 58.236 33.333 0.00 0.00 41.26 1.40
1492 1566 4.679197 TGATAGCAAATTCAAACGCACAAC 59.321 37.500 0.00 0.00 0.00 3.32
1533 1608 2.224314 GGAGAACAGTAACACAAGCTGC 59.776 50.000 0.00 0.00 33.87 5.25
1537 1617 6.618287 TGAATTGGAGAACAGTAACACAAG 57.382 37.500 0.00 0.00 0.00 3.16
1646 1732 4.798574 GACAATCAGTCATTTGGGAACAC 58.201 43.478 0.00 0.00 46.77 3.32
1713 1812 2.358939 AACTGTAAAGGCCGTAGTCG 57.641 50.000 0.00 0.00 0.00 4.18
1721 1820 3.435671 AGATGCGTGTAAACTGTAAAGGC 59.564 43.478 0.00 0.00 0.00 4.35
1774 1887 8.834465 GCATGATCATAGATTTCTGTTGTACTT 58.166 33.333 8.15 0.00 0.00 2.24
1799 1912 3.119602 TCCAGTCGTGTGAGTGTAATAGC 60.120 47.826 0.01 0.00 42.88 2.97
1815 1928 6.767456 AGATTAGTCATGATCCATTCCAGTC 58.233 40.000 0.00 0.00 0.00 3.51
1852 1976 4.837972 AGCTAAATCTCTTTCACCCTCAC 58.162 43.478 0.00 0.00 0.00 3.51
2225 2355 6.049149 CGTGTACATCTTCCACAGGATATTT 58.951 40.000 0.00 0.00 31.43 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.