Multiple sequence alignment - TraesCS6B01G292800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G292800 chr6B 100.000 2700 0 0 1 2700 526713424 526716123 0.000000e+00 4987.0
1 TraesCS6B01G292800 chr6B 93.617 47 3 0 442 488 653860932 653860978 1.340000e-08 71.3
2 TraesCS6B01G292800 chr6D 92.182 1164 31 12 805 1947 352361941 352360817 0.000000e+00 1591.0
3 TraesCS6B01G292800 chr6D 96.543 752 25 1 1949 2700 352360749 352359999 0.000000e+00 1243.0
4 TraesCS6B01G292800 chr6D 91.228 57 3 2 428 483 115322367 115322422 2.880000e-10 76.8
5 TraesCS6B01G292800 chr6A 92.227 759 44 6 1949 2700 490490295 490491045 0.000000e+00 1061.0
6 TraesCS6B01G292800 chr6A 89.791 813 31 22 1157 1938 490489427 490490218 0.000000e+00 994.0
7 TraesCS6B01G292800 chr6A 81.726 394 18 27 701 1081 490488673 490489025 2.050000e-71 279.0
8 TraesCS6B01G292800 chr6A 93.939 66 0 1 1091 1152 490489333 490489398 2.210000e-16 97.1
9 TraesCS6B01G292800 chr3A 91.583 499 31 8 2 497 34476399 34475909 0.000000e+00 678.0
10 TraesCS6B01G292800 chr3A 84.030 263 33 4 1 261 193605207 193604952 7.470000e-61 244.0
11 TraesCS6B01G292800 chr5A 91.036 502 26 7 2 491 378496830 378497324 0.000000e+00 660.0
12 TraesCS6B01G292800 chr5A 85.421 439 42 10 1 438 687407527 687407110 1.150000e-118 436.0
13 TraesCS6B01G292800 chr5D 86.585 492 49 10 1 491 517055321 517055796 6.620000e-146 527.0
14 TraesCS6B01G292800 chr4D 86.985 461 46 8 1 460 130544799 130545246 8.630000e-140 507.0
15 TraesCS6B01G292800 chrUn 85.014 367 46 4 1 359 42105767 42105402 5.490000e-97 364.0
16 TraesCS6B01G292800 chr7B 86.512 215 21 5 1 211 474466631 474466841 2.090000e-56 230.0
17 TraesCS6B01G292800 chr2A 90.099 101 8 2 6 105 18154230 18154329 2.180000e-26 130.0
18 TraesCS6B01G292800 chr7A 75.641 234 37 15 257 485 9363594 9363812 6.150000e-17 99.0
19 TraesCS6B01G292800 chr4A 90.000 60 6 0 440 499 734357971 734357912 8.010000e-11 78.7
20 TraesCS6B01G292800 chr4A 82.222 90 15 1 397 486 464889116 464889204 2.880000e-10 76.8
21 TraesCS6B01G292800 chr1D 92.308 52 4 0 440 491 348037711 348037660 1.040000e-09 75.0
22 TraesCS6B01G292800 chr1B 83.871 62 9 1 267 328 570845307 570845367 1.040000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G292800 chr6B 526713424 526716123 2699 False 4987.000 4987 100.00000 1 2700 1 chr6B.!!$F1 2699
1 TraesCS6B01G292800 chr6D 352359999 352361941 1942 True 1417.000 1591 94.36250 805 2700 2 chr6D.!!$R1 1895
2 TraesCS6B01G292800 chr6A 490488673 490491045 2372 False 607.775 1061 89.42075 701 2700 4 chr6A.!!$F1 1999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 566 0.030235 GTTGTCGAAGCCAACAACCC 59.97 55.0 11.34 0.0 0.0 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2785 0.034089 AAGCAGCCCTGTAACCATCC 60.034 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.725641 GACGGCGGCAACCTTTTT 59.274 55.556 8.47 0.00 0.00 1.94
35 36 4.399004 TTTTTGCTGCAACCATTGTAGT 57.601 36.364 15.72 0.00 44.05 2.73
36 37 4.399004 TTTTGCTGCAACCATTGTAGTT 57.601 36.364 15.72 0.00 44.05 2.24
37 38 4.399004 TTTGCTGCAACCATTGTAGTTT 57.601 36.364 15.72 0.00 44.05 2.66
38 39 4.399004 TTGCTGCAACCATTGTAGTTTT 57.601 36.364 11.69 0.00 44.05 2.43
39 40 4.399004 TGCTGCAACCATTGTAGTTTTT 57.601 36.364 0.00 0.00 44.05 1.94
40 41 4.118410 TGCTGCAACCATTGTAGTTTTTG 58.882 39.130 0.00 0.00 44.05 2.44
41 42 3.059665 GCTGCAACCATTGTAGTTTTTGC 60.060 43.478 8.20 0.00 44.05 3.68
42 43 4.370917 CTGCAACCATTGTAGTTTTTGCT 58.629 39.130 5.77 0.00 40.01 3.91
43 44 5.521906 TGCAACCATTGTAGTTTTTGCTA 57.478 34.783 5.77 0.00 40.01 3.49
44 45 5.285651 TGCAACCATTGTAGTTTTTGCTAC 58.714 37.500 5.77 0.00 40.01 3.58
45 46 4.381566 GCAACCATTGTAGTTTTTGCTACG 59.618 41.667 0.00 0.00 43.03 3.51
46 47 5.516090 CAACCATTGTAGTTTTTGCTACGT 58.484 37.500 0.00 0.00 43.03 3.57
47 48 5.352643 ACCATTGTAGTTTTTGCTACGTC 57.647 39.130 0.00 0.00 43.03 4.34
48 49 4.214758 ACCATTGTAGTTTTTGCTACGTCC 59.785 41.667 0.00 0.00 43.03 4.79
49 50 4.391358 CATTGTAGTTTTTGCTACGTCCG 58.609 43.478 0.00 0.00 43.03 4.79
50 51 3.096489 TGTAGTTTTTGCTACGTCCGT 57.904 42.857 0.00 0.00 43.03 4.69
51 52 3.052036 TGTAGTTTTTGCTACGTCCGTC 58.948 45.455 0.00 0.00 43.03 4.79
52 53 1.134226 AGTTTTTGCTACGTCCGTCG 58.866 50.000 0.00 0.00 46.00 5.12
53 54 1.130955 GTTTTTGCTACGTCCGTCGA 58.869 50.000 0.00 0.00 42.86 4.20
54 55 1.522258 GTTTTTGCTACGTCCGTCGAA 59.478 47.619 0.00 0.00 42.86 3.71
55 56 1.411394 TTTTGCTACGTCCGTCGAAG 58.589 50.000 0.00 0.00 42.86 3.79
56 57 0.592637 TTTGCTACGTCCGTCGAAGA 59.407 50.000 0.00 0.00 42.86 2.87
57 58 0.806868 TTGCTACGTCCGTCGAAGAT 59.193 50.000 0.00 0.00 40.67 2.40
58 59 0.806868 TGCTACGTCCGTCGAAGATT 59.193 50.000 0.00 0.00 40.67 2.40
59 60 1.200716 TGCTACGTCCGTCGAAGATTT 59.799 47.619 0.00 0.00 40.67 2.17
60 61 2.257034 GCTACGTCCGTCGAAGATTTT 58.743 47.619 0.00 0.00 40.67 1.82
61 62 2.665052 GCTACGTCCGTCGAAGATTTTT 59.335 45.455 0.00 0.00 40.67 1.94
62 63 3.481467 GCTACGTCCGTCGAAGATTTTTG 60.481 47.826 0.00 0.00 40.67 2.44
63 64 1.193874 ACGTCCGTCGAAGATTTTTGC 59.806 47.619 0.00 0.00 40.67 3.68
64 65 1.459592 CGTCCGTCGAAGATTTTTGCT 59.540 47.619 0.00 0.00 40.67 3.91
65 66 2.664568 CGTCCGTCGAAGATTTTTGCTA 59.335 45.455 0.00 0.00 40.67 3.49
66 67 3.481467 CGTCCGTCGAAGATTTTTGCTAC 60.481 47.826 0.00 0.00 40.67 3.58
67 68 3.430895 GTCCGTCGAAGATTTTTGCTACA 59.569 43.478 0.00 0.00 40.67 2.74
68 69 4.092968 GTCCGTCGAAGATTTTTGCTACAT 59.907 41.667 0.00 0.00 40.67 2.29
69 70 4.328983 TCCGTCGAAGATTTTTGCTACATC 59.671 41.667 0.00 0.00 40.67 3.06
70 71 4.092821 CCGTCGAAGATTTTTGCTACATCA 59.907 41.667 0.00 0.00 40.67 3.07
71 72 5.220662 CCGTCGAAGATTTTTGCTACATCAT 60.221 40.000 0.00 0.00 40.67 2.45
72 73 6.250819 CGTCGAAGATTTTTGCTACATCATT 58.749 36.000 0.00 0.00 40.67 2.57
73 74 6.742718 CGTCGAAGATTTTTGCTACATCATTT 59.257 34.615 0.00 0.00 40.67 2.32
74 75 7.271223 CGTCGAAGATTTTTGCTACATCATTTT 59.729 33.333 0.00 0.00 40.67 1.82
75 76 8.915654 GTCGAAGATTTTTGCTACATCATTTTT 58.084 29.630 0.00 0.00 40.67 1.94
91 92 1.702182 TTTTTCATGGTGGAGCTGCA 58.298 45.000 2.72 2.72 0.00 4.41
92 93 1.250328 TTTTCATGGTGGAGCTGCAG 58.750 50.000 8.73 10.11 0.00 4.41
93 94 0.609957 TTTCATGGTGGAGCTGCAGG 60.610 55.000 17.12 0.00 0.00 4.85
94 95 3.138798 CATGGTGGAGCTGCAGGC 61.139 66.667 17.12 7.98 42.19 4.85
111 112 4.554363 CTCGACGGCGGCGAAGAT 62.554 66.667 38.41 16.22 37.32 2.40
112 113 4.847516 TCGACGGCGGCGAAGATG 62.848 66.667 37.95 20.46 38.28 2.90
113 114 4.847516 CGACGGCGGCGAAGATGA 62.848 66.667 38.93 0.00 0.00 2.92
114 115 2.279517 GACGGCGGCGAAGATGAT 60.280 61.111 38.93 14.02 0.00 2.45
115 116 1.883084 GACGGCGGCGAAGATGATT 60.883 57.895 38.93 13.14 0.00 2.57
116 117 1.429148 GACGGCGGCGAAGATGATTT 61.429 55.000 38.93 12.27 0.00 2.17
117 118 1.024579 ACGGCGGCGAAGATGATTTT 61.025 50.000 38.93 8.36 0.00 1.82
118 119 0.589729 CGGCGGCGAAGATGATTTTG 60.590 55.000 29.19 0.00 0.00 2.44
119 120 0.451783 GGCGGCGAAGATGATTTTGT 59.548 50.000 12.98 0.00 0.00 2.83
120 121 1.538276 GCGGCGAAGATGATTTTGTG 58.462 50.000 12.98 0.00 0.00 3.33
121 122 1.135689 GCGGCGAAGATGATTTTGTGT 60.136 47.619 12.98 0.00 0.00 3.72
122 123 2.668279 GCGGCGAAGATGATTTTGTGTT 60.668 45.455 12.98 0.00 0.00 3.32
123 124 2.910482 CGGCGAAGATGATTTTGTGTTG 59.090 45.455 0.00 0.00 0.00 3.33
124 125 2.663119 GGCGAAGATGATTTTGTGTTGC 59.337 45.455 0.00 0.00 0.00 4.17
125 126 3.307674 GCGAAGATGATTTTGTGTTGCA 58.692 40.909 0.00 0.00 0.00 4.08
126 127 3.735240 GCGAAGATGATTTTGTGTTGCAA 59.265 39.130 0.00 0.00 34.87 4.08
127 128 4.375305 GCGAAGATGATTTTGTGTTGCAAC 60.375 41.667 22.83 22.83 36.72 4.17
128 129 4.977963 CGAAGATGATTTTGTGTTGCAACT 59.022 37.500 28.61 8.82 36.72 3.16
129 130 5.108141 CGAAGATGATTTTGTGTTGCAACTG 60.108 40.000 28.61 0.00 36.72 3.16
130 131 5.266733 AGATGATTTTGTGTTGCAACTGT 57.733 34.783 28.61 9.42 36.72 3.55
131 132 5.284079 AGATGATTTTGTGTTGCAACTGTC 58.716 37.500 28.61 18.77 36.72 3.51
132 133 4.446994 TGATTTTGTGTTGCAACTGTCA 57.553 36.364 28.61 20.82 36.72 3.58
133 134 5.008619 TGATTTTGTGTTGCAACTGTCAT 57.991 34.783 28.61 14.65 36.72 3.06
134 135 5.417811 TGATTTTGTGTTGCAACTGTCATT 58.582 33.333 28.61 11.08 36.72 2.57
135 136 5.873712 TGATTTTGTGTTGCAACTGTCATTT 59.126 32.000 28.61 9.66 36.72 2.32
136 137 5.776519 TTTTGTGTTGCAACTGTCATTTC 57.223 34.783 28.61 10.26 36.72 2.17
137 138 4.717233 TTGTGTTGCAACTGTCATTTCT 57.283 36.364 28.61 0.00 31.07 2.52
138 139 4.717233 TGTGTTGCAACTGTCATTTCTT 57.283 36.364 28.61 0.00 0.00 2.52
139 140 5.070770 TGTGTTGCAACTGTCATTTCTTT 57.929 34.783 28.61 0.00 0.00 2.52
140 141 5.477510 TGTGTTGCAACTGTCATTTCTTTT 58.522 33.333 28.61 0.00 0.00 2.27
141 142 5.931146 TGTGTTGCAACTGTCATTTCTTTTT 59.069 32.000 28.61 0.00 0.00 1.94
142 143 6.128607 TGTGTTGCAACTGTCATTTCTTTTTG 60.129 34.615 28.61 0.00 0.00 2.44
143 144 5.163874 TGTTGCAACTGTCATTTCTTTTTGC 60.164 36.000 28.61 0.00 38.65 3.68
144 145 4.757594 TGCAACTGTCATTTCTTTTTGCT 58.242 34.783 0.00 0.00 38.89 3.91
145 146 5.900425 TGCAACTGTCATTTCTTTTTGCTA 58.100 33.333 0.00 0.00 38.89 3.49
146 147 5.748152 TGCAACTGTCATTTCTTTTTGCTAC 59.252 36.000 0.00 0.00 38.89 3.58
147 148 5.108254 GCAACTGTCATTTCTTTTTGCTACG 60.108 40.000 0.00 0.00 35.95 3.51
148 149 6.198687 CAACTGTCATTTCTTTTTGCTACGA 58.801 36.000 0.00 0.00 0.00 3.43
149 150 5.748592 ACTGTCATTTCTTTTTGCTACGAC 58.251 37.500 0.00 0.00 0.00 4.34
150 151 5.103290 TGTCATTTCTTTTTGCTACGACC 57.897 39.130 0.00 0.00 0.00 4.79
151 152 4.819630 TGTCATTTCTTTTTGCTACGACCT 59.180 37.500 0.00 0.00 0.00 3.85
152 153 5.992829 TGTCATTTCTTTTTGCTACGACCTA 59.007 36.000 0.00 0.00 0.00 3.08
153 154 6.653320 TGTCATTTCTTTTTGCTACGACCTAT 59.347 34.615 0.00 0.00 0.00 2.57
154 155 6.961554 GTCATTTCTTTTTGCTACGACCTATG 59.038 38.462 0.00 0.00 0.00 2.23
155 156 5.873179 TTTCTTTTTGCTACGACCTATGG 57.127 39.130 0.00 0.00 0.00 2.74
156 157 4.811969 TCTTTTTGCTACGACCTATGGA 57.188 40.909 0.00 0.00 0.00 3.41
157 158 4.755411 TCTTTTTGCTACGACCTATGGAG 58.245 43.478 0.00 0.00 0.00 3.86
158 159 4.222145 TCTTTTTGCTACGACCTATGGAGT 59.778 41.667 0.00 0.00 0.00 3.85
159 160 4.546829 TTTTGCTACGACCTATGGAGTT 57.453 40.909 0.00 0.00 0.00 3.01
160 161 4.546829 TTTGCTACGACCTATGGAGTTT 57.453 40.909 0.00 0.00 0.00 2.66
161 162 4.546829 TTGCTACGACCTATGGAGTTTT 57.453 40.909 0.00 0.00 0.00 2.43
162 163 4.546829 TGCTACGACCTATGGAGTTTTT 57.453 40.909 0.00 0.00 0.00 1.94
163 164 4.250464 TGCTACGACCTATGGAGTTTTTG 58.750 43.478 0.00 0.00 0.00 2.44
164 165 3.063588 GCTACGACCTATGGAGTTTTTGC 59.936 47.826 0.00 0.00 0.00 3.68
165 166 3.418684 ACGACCTATGGAGTTTTTGCT 57.581 42.857 0.00 0.00 0.00 3.91
166 167 4.546829 ACGACCTATGGAGTTTTTGCTA 57.453 40.909 0.00 0.00 0.00 3.49
167 168 4.251268 ACGACCTATGGAGTTTTTGCTAC 58.749 43.478 0.00 0.00 0.00 3.58
168 169 4.250464 CGACCTATGGAGTTTTTGCTACA 58.750 43.478 0.00 0.00 33.25 2.74
169 170 4.876107 CGACCTATGGAGTTTTTGCTACAT 59.124 41.667 0.00 0.00 42.33 2.29
170 171 6.046593 CGACCTATGGAGTTTTTGCTACATA 58.953 40.000 0.00 0.00 40.32 2.29
171 172 6.018994 CGACCTATGGAGTTTTTGCTACATAC 60.019 42.308 0.00 0.00 40.32 2.39
172 173 6.717289 ACCTATGGAGTTTTTGCTACATACA 58.283 36.000 0.00 0.00 40.32 2.29
173 174 7.346471 ACCTATGGAGTTTTTGCTACATACAT 58.654 34.615 0.00 0.00 40.32 2.29
174 175 7.834181 ACCTATGGAGTTTTTGCTACATACATT 59.166 33.333 0.00 0.00 40.32 2.71
175 176 8.345565 CCTATGGAGTTTTTGCTACATACATTC 58.654 37.037 0.00 0.00 40.32 2.67
176 177 7.701539 ATGGAGTTTTTGCTACATACATTCA 57.298 32.000 0.00 0.00 38.21 2.57
177 178 7.701539 TGGAGTTTTTGCTACATACATTCAT 57.298 32.000 0.00 0.00 0.00 2.57
178 179 8.121305 TGGAGTTTTTGCTACATACATTCATT 57.879 30.769 0.00 0.00 0.00 2.57
179 180 8.584157 TGGAGTTTTTGCTACATACATTCATTT 58.416 29.630 0.00 0.00 0.00 2.32
180 181 9.423061 GGAGTTTTTGCTACATACATTCATTTT 57.577 29.630 0.00 0.00 0.00 1.82
206 207 1.896220 TTTTTCTGAGATGGCGTGCT 58.104 45.000 0.00 0.00 0.00 4.40
207 208 1.896220 TTTTCTGAGATGGCGTGCTT 58.104 45.000 0.00 0.00 0.00 3.91
208 209 1.442769 TTTCTGAGATGGCGTGCTTC 58.557 50.000 0.00 0.00 0.00 3.86
209 210 0.321346 TTCTGAGATGGCGTGCTTCA 59.679 50.000 0.00 0.00 0.00 3.02
210 211 0.538584 TCTGAGATGGCGTGCTTCAT 59.461 50.000 0.00 0.00 0.00 2.57
211 212 0.935898 CTGAGATGGCGTGCTTCATC 59.064 55.000 3.73 3.73 39.85 2.92
213 214 1.756538 TGAGATGGCGTGCTTCATCTA 59.243 47.619 11.83 2.02 46.89 1.98
214 215 2.168313 TGAGATGGCGTGCTTCATCTAA 59.832 45.455 11.83 4.44 46.89 2.10
215 216 3.181462 TGAGATGGCGTGCTTCATCTAAT 60.181 43.478 11.83 0.00 46.89 1.73
216 217 3.136763 AGATGGCGTGCTTCATCTAATG 58.863 45.455 10.60 0.00 45.61 1.90
217 218 2.689553 TGGCGTGCTTCATCTAATGA 57.310 45.000 0.00 0.00 37.55 2.57
218 219 2.279741 TGGCGTGCTTCATCTAATGAC 58.720 47.619 0.00 0.00 39.39 3.06
219 220 2.279741 GGCGTGCTTCATCTAATGACA 58.720 47.619 0.00 0.00 39.39 3.58
220 221 2.286294 GGCGTGCTTCATCTAATGACAG 59.714 50.000 0.00 0.00 39.39 3.51
221 222 3.190079 GCGTGCTTCATCTAATGACAGA 58.810 45.455 0.00 0.00 39.39 3.41
222 223 3.618594 GCGTGCTTCATCTAATGACAGAA 59.381 43.478 0.00 0.00 39.39 3.02
223 224 4.260132 GCGTGCTTCATCTAATGACAGAAG 60.260 45.833 0.00 0.00 39.39 2.85
224 225 5.105063 CGTGCTTCATCTAATGACAGAAGA 58.895 41.667 0.00 0.00 39.39 2.87
225 226 5.005203 CGTGCTTCATCTAATGACAGAAGAC 59.995 44.000 0.00 0.00 39.39 3.01
226 227 5.005203 GTGCTTCATCTAATGACAGAAGACG 59.995 44.000 0.00 0.00 39.39 4.18
227 228 4.505922 GCTTCATCTAATGACAGAAGACGG 59.494 45.833 0.00 0.00 39.39 4.79
228 229 4.046938 TCATCTAATGACAGAAGACGGC 57.953 45.455 0.00 0.00 33.59 5.68
229 230 2.561733 TCTAATGACAGAAGACGGCG 57.438 50.000 4.80 4.80 0.00 6.46
230 231 1.816835 TCTAATGACAGAAGACGGCGT 59.183 47.619 14.65 14.65 0.00 5.68
231 232 1.920574 CTAATGACAGAAGACGGCGTG 59.079 52.381 21.19 4.77 0.00 5.34
232 233 0.033504 AATGACAGAAGACGGCGTGT 59.966 50.000 21.19 11.98 0.00 4.49
233 234 0.667487 ATGACAGAAGACGGCGTGTG 60.667 55.000 21.19 12.00 0.00 3.82
234 235 2.658707 GACAGAAGACGGCGTGTGC 61.659 63.158 21.19 13.69 41.71 4.57
235 236 3.767230 CAGAAGACGGCGTGTGCG 61.767 66.667 21.19 4.79 44.10 5.34
274 275 4.016706 GGTGTGGGGGAGGACGTG 62.017 72.222 0.00 0.00 0.00 4.49
275 276 4.016706 GTGTGGGGGAGGACGTGG 62.017 72.222 0.00 0.00 0.00 4.94
281 282 4.394712 GGGAGGACGTGGGTGCTG 62.395 72.222 0.00 0.00 45.69 4.41
327 328 4.416738 GGTGGCTGGGGCAGAGAC 62.417 72.222 0.00 0.00 39.19 3.36
328 329 3.640407 GTGGCTGGGGCAGAGACA 61.640 66.667 0.00 0.00 39.19 3.41
329 330 2.611800 TGGCTGGGGCAGAGACAT 60.612 61.111 0.00 0.00 40.87 3.06
330 331 2.191641 GGCTGGGGCAGAGACATC 59.808 66.667 0.00 0.00 40.87 3.06
331 332 2.373707 GGCTGGGGCAGAGACATCT 61.374 63.158 0.00 0.00 40.87 2.90
332 333 1.145819 GCTGGGGCAGAGACATCTC 59.854 63.158 0.26 0.26 43.17 2.75
333 334 1.620739 GCTGGGGCAGAGACATCTCA 61.621 60.000 11.39 0.00 45.21 3.27
334 335 0.177604 CTGGGGCAGAGACATCTCAC 59.822 60.000 11.39 2.96 45.21 3.51
335 336 0.545071 TGGGGCAGAGACATCTCACA 60.545 55.000 11.39 0.13 45.21 3.58
336 337 0.835941 GGGGCAGAGACATCTCACAT 59.164 55.000 11.39 0.00 45.21 3.21
337 338 1.202627 GGGGCAGAGACATCTCACATC 60.203 57.143 11.39 0.00 45.21 3.06
338 339 1.537776 GGGCAGAGACATCTCACATCG 60.538 57.143 11.39 0.00 45.21 3.84
339 340 1.537776 GGCAGAGACATCTCACATCGG 60.538 57.143 11.39 0.00 45.21 4.18
340 341 1.406898 GCAGAGACATCTCACATCGGA 59.593 52.381 11.39 0.00 45.21 4.55
341 342 2.797792 GCAGAGACATCTCACATCGGAC 60.798 54.545 11.39 0.00 45.21 4.79
342 343 1.673400 AGAGACATCTCACATCGGACG 59.327 52.381 11.39 0.00 45.21 4.79
343 344 1.671328 GAGACATCTCACATCGGACGA 59.329 52.381 3.95 0.00 42.42 4.20
344 345 1.673400 AGACATCTCACATCGGACGAG 59.327 52.381 0.00 0.00 0.00 4.18
345 346 1.402259 GACATCTCACATCGGACGAGT 59.598 52.381 0.00 0.00 0.00 4.18
346 347 1.133216 ACATCTCACATCGGACGAGTG 59.867 52.381 14.01 14.01 34.67 3.51
347 348 0.741326 ATCTCACATCGGACGAGTGG 59.259 55.000 17.57 11.74 34.17 4.00
348 349 0.322187 TCTCACATCGGACGAGTGGA 60.322 55.000 17.57 13.09 34.17 4.02
349 350 0.741326 CTCACATCGGACGAGTGGAT 59.259 55.000 17.57 0.00 34.17 3.41
350 351 0.738975 TCACATCGGACGAGTGGATC 59.261 55.000 17.57 0.00 34.17 3.36
351 352 0.741326 CACATCGGACGAGTGGATCT 59.259 55.000 12.99 0.00 0.00 2.75
352 353 0.741326 ACATCGGACGAGTGGATCTG 59.259 55.000 0.00 0.00 0.00 2.90
353 354 1.025041 CATCGGACGAGTGGATCTGA 58.975 55.000 0.00 0.00 34.76 3.27
354 355 1.405463 CATCGGACGAGTGGATCTGAA 59.595 52.381 0.00 0.00 33.97 3.02
355 356 1.541379 TCGGACGAGTGGATCTGAAA 58.459 50.000 0.00 0.00 0.00 2.69
356 357 1.201647 TCGGACGAGTGGATCTGAAAC 59.798 52.381 0.00 0.00 0.00 2.78
357 358 1.202582 CGGACGAGTGGATCTGAAACT 59.797 52.381 0.00 0.00 0.00 2.66
358 359 2.611518 GGACGAGTGGATCTGAAACTG 58.388 52.381 0.00 0.00 0.00 3.16
359 360 2.231478 GGACGAGTGGATCTGAAACTGA 59.769 50.000 0.00 0.00 0.00 3.41
360 361 3.306088 GGACGAGTGGATCTGAAACTGAA 60.306 47.826 0.00 0.00 0.00 3.02
361 362 3.919216 ACGAGTGGATCTGAAACTGAAG 58.081 45.455 0.00 0.00 0.00 3.02
362 363 3.257393 CGAGTGGATCTGAAACTGAAGG 58.743 50.000 0.00 0.00 0.00 3.46
363 364 3.056536 CGAGTGGATCTGAAACTGAAGGA 60.057 47.826 0.00 0.00 0.00 3.36
364 365 4.502962 GAGTGGATCTGAAACTGAAGGAG 58.497 47.826 0.00 0.00 0.00 3.69
365 366 4.163427 AGTGGATCTGAAACTGAAGGAGA 58.837 43.478 0.00 0.00 0.00 3.71
366 367 4.020662 AGTGGATCTGAAACTGAAGGAGAC 60.021 45.833 0.00 0.00 0.00 3.36
367 368 3.056536 TGGATCTGAAACTGAAGGAGACG 60.057 47.826 0.00 0.00 0.00 4.18
368 369 3.516615 GATCTGAAACTGAAGGAGACGG 58.483 50.000 0.00 0.00 0.00 4.79
369 370 1.618837 TCTGAAACTGAAGGAGACGGG 59.381 52.381 0.00 0.00 0.00 5.28
370 371 0.685097 TGAAACTGAAGGAGACGGGG 59.315 55.000 0.00 0.00 0.00 5.73
371 372 0.036294 GAAACTGAAGGAGACGGGGG 60.036 60.000 0.00 0.00 0.00 5.40
372 373 0.473117 AAACTGAAGGAGACGGGGGA 60.473 55.000 0.00 0.00 0.00 4.81
373 374 0.473117 AACTGAAGGAGACGGGGGAA 60.473 55.000 0.00 0.00 0.00 3.97
374 375 0.905337 ACTGAAGGAGACGGGGGAAG 60.905 60.000 0.00 0.00 0.00 3.46
375 376 0.614979 CTGAAGGAGACGGGGGAAGA 60.615 60.000 0.00 0.00 0.00 2.87
376 377 0.178915 TGAAGGAGACGGGGGAAGAA 60.179 55.000 0.00 0.00 0.00 2.52
377 378 0.537653 GAAGGAGACGGGGGAAGAAG 59.462 60.000 0.00 0.00 0.00 2.85
378 379 0.116541 AAGGAGACGGGGGAAGAAGA 59.883 55.000 0.00 0.00 0.00 2.87
379 380 0.615261 AGGAGACGGGGGAAGAAGAC 60.615 60.000 0.00 0.00 0.00 3.01
380 381 1.511768 GAGACGGGGGAAGAAGACG 59.488 63.158 0.00 0.00 0.00 4.18
381 382 0.964358 GAGACGGGGGAAGAAGACGA 60.964 60.000 0.00 0.00 0.00 4.20
382 383 0.324460 AGACGGGGGAAGAAGACGAT 60.324 55.000 0.00 0.00 0.00 3.73
383 384 0.179108 GACGGGGGAAGAAGACGATG 60.179 60.000 0.00 0.00 0.00 3.84
384 385 0.613853 ACGGGGGAAGAAGACGATGA 60.614 55.000 0.00 0.00 0.00 2.92
385 386 0.179108 CGGGGGAAGAAGACGATGAC 60.179 60.000 0.00 0.00 0.00 3.06
386 387 0.179108 GGGGGAAGAAGACGATGACG 60.179 60.000 0.00 0.00 45.75 4.35
396 397 2.184322 CGATGACGTGGGGGTGAG 59.816 66.667 0.00 0.00 34.56 3.51
397 398 2.584608 GATGACGTGGGGGTGAGG 59.415 66.667 0.00 0.00 0.00 3.86
398 399 3.009115 ATGACGTGGGGGTGAGGG 61.009 66.667 0.00 0.00 0.00 4.30
405 406 3.683518 GGGGGTGAGGGGGCAAAT 61.684 66.667 0.00 0.00 0.00 2.32
406 407 2.042944 GGGGTGAGGGGGCAAATC 60.043 66.667 0.00 0.00 0.00 2.17
407 408 2.440247 GGGTGAGGGGGCAAATCG 60.440 66.667 0.00 0.00 0.00 3.34
408 409 2.674754 GGTGAGGGGGCAAATCGA 59.325 61.111 0.00 0.00 0.00 3.59
409 410 1.001393 GGTGAGGGGGCAAATCGAA 60.001 57.895 0.00 0.00 0.00 3.71
410 411 1.313091 GGTGAGGGGGCAAATCGAAC 61.313 60.000 0.00 0.00 0.00 3.95
411 412 1.376683 TGAGGGGGCAAATCGAACG 60.377 57.895 0.00 0.00 0.00 3.95
412 413 2.045340 AGGGGGCAAATCGAACGG 60.045 61.111 0.00 0.00 0.00 4.44
413 414 2.360726 GGGGGCAAATCGAACGGT 60.361 61.111 0.00 0.00 0.00 4.83
414 415 1.974875 GGGGGCAAATCGAACGGTT 60.975 57.895 0.00 0.00 0.00 4.44
415 416 1.211709 GGGGCAAATCGAACGGTTG 59.788 57.895 0.00 1.07 0.00 3.77
416 417 1.520600 GGGGCAAATCGAACGGTTGT 61.521 55.000 0.00 0.00 0.00 3.32
417 418 0.312729 GGGCAAATCGAACGGTTGTT 59.687 50.000 0.00 0.00 42.23 2.83
418 419 1.269361 GGGCAAATCGAACGGTTGTTT 60.269 47.619 0.00 0.00 38.78 2.83
419 420 2.030981 GGGCAAATCGAACGGTTGTTTA 60.031 45.455 0.00 0.00 38.78 2.01
420 421 3.231160 GGCAAATCGAACGGTTGTTTAG 58.769 45.455 0.00 0.00 38.78 1.85
421 422 2.655001 GCAAATCGAACGGTTGTTTAGC 59.345 45.455 0.00 1.25 38.78 3.09
422 423 3.608474 GCAAATCGAACGGTTGTTTAGCT 60.608 43.478 0.00 0.00 38.78 3.32
423 424 3.806316 AATCGAACGGTTGTTTAGCTG 57.194 42.857 0.00 0.00 38.78 4.24
424 425 0.863144 TCGAACGGTTGTTTAGCTGC 59.137 50.000 0.00 0.00 38.78 5.25
425 426 0.865769 CGAACGGTTGTTTAGCTGCT 59.134 50.000 7.57 7.57 38.78 4.24
426 427 1.398451 CGAACGGTTGTTTAGCTGCTG 60.398 52.381 13.43 0.00 38.78 4.41
427 428 0.951558 AACGGTTGTTTAGCTGCTGG 59.048 50.000 13.43 0.00 33.53 4.85
428 429 0.107831 ACGGTTGTTTAGCTGCTGGA 59.892 50.000 13.43 0.00 0.00 3.86
429 430 1.271379 ACGGTTGTTTAGCTGCTGGAT 60.271 47.619 13.43 0.00 0.00 3.41
430 431 1.398390 CGGTTGTTTAGCTGCTGGATC 59.602 52.381 13.43 1.03 0.00 3.36
431 432 1.398390 GGTTGTTTAGCTGCTGGATCG 59.602 52.381 13.43 0.00 0.00 3.69
432 433 1.086696 TTGTTTAGCTGCTGGATCGC 58.913 50.000 13.43 0.00 0.00 4.58
433 434 0.036483 TGTTTAGCTGCTGGATCGCA 60.036 50.000 13.43 0.04 38.40 5.10
434 435 0.375106 GTTTAGCTGCTGGATCGCAC 59.625 55.000 13.43 0.00 35.74 5.34
435 436 1.083806 TTTAGCTGCTGGATCGCACG 61.084 55.000 13.43 0.00 35.74 5.34
436 437 2.906182 TTAGCTGCTGGATCGCACGG 62.906 60.000 13.43 0.00 35.74 4.94
438 439 4.827087 CTGCTGGATCGCACGGCT 62.827 66.667 3.40 0.00 40.81 5.52
461 462 4.576993 GCGACCAGCCCAAATTTG 57.423 55.556 11.40 11.40 40.81 2.32
470 471 2.047370 CCAAATTTGGGCCGGTGC 60.047 61.111 26.87 0.00 44.70 5.01
471 472 2.739784 CAAATTTGGGCCGGTGCA 59.260 55.556 10.49 0.00 40.13 4.57
472 473 1.667510 CAAATTTGGGCCGGTGCAC 60.668 57.895 8.80 8.80 43.03 4.57
473 474 2.878089 AAATTTGGGCCGGTGCACC 61.878 57.895 26.78 26.78 41.56 5.01
484 485 4.830765 GTGCACCGGCGCCTATCA 62.831 66.667 26.68 13.88 44.75 2.15
485 486 4.529219 TGCACCGGCGCCTATCAG 62.529 66.667 26.68 8.25 45.35 2.90
492 493 4.189580 GCGCCTATCAGCCCCCAA 62.190 66.667 0.00 0.00 0.00 4.12
493 494 2.595095 CGCCTATCAGCCCCCAAA 59.405 61.111 0.00 0.00 0.00 3.28
494 495 1.526917 CGCCTATCAGCCCCCAAAG 60.527 63.158 0.00 0.00 0.00 2.77
495 496 1.922821 GCCTATCAGCCCCCAAAGA 59.077 57.895 0.00 0.00 0.00 2.52
496 497 0.258774 GCCTATCAGCCCCCAAAGAA 59.741 55.000 0.00 0.00 0.00 2.52
497 498 1.133356 GCCTATCAGCCCCCAAAGAAT 60.133 52.381 0.00 0.00 0.00 2.40
498 499 2.690936 GCCTATCAGCCCCCAAAGAATT 60.691 50.000 0.00 0.00 0.00 2.17
499 500 3.646534 CCTATCAGCCCCCAAAGAATTT 58.353 45.455 0.00 0.00 40.26 1.82
500 501 4.803452 CCTATCAGCCCCCAAAGAATTTA 58.197 43.478 0.00 0.00 35.03 1.40
501 502 4.829492 CCTATCAGCCCCCAAAGAATTTAG 59.171 45.833 0.00 0.00 35.03 1.85
502 503 2.456577 TCAGCCCCCAAAGAATTTAGC 58.543 47.619 0.00 0.00 35.03 3.09
503 504 1.482182 CAGCCCCCAAAGAATTTAGCC 59.518 52.381 0.00 0.00 35.03 3.93
504 505 1.078656 AGCCCCCAAAGAATTTAGCCA 59.921 47.619 0.00 0.00 35.03 4.75
505 506 1.207089 GCCCCCAAAGAATTTAGCCAC 59.793 52.381 0.00 0.00 35.03 5.01
506 507 2.534990 CCCCCAAAGAATTTAGCCACA 58.465 47.619 0.00 0.00 35.03 4.17
507 508 3.106827 CCCCCAAAGAATTTAGCCACAT 58.893 45.455 0.00 0.00 35.03 3.21
508 509 3.519107 CCCCCAAAGAATTTAGCCACATT 59.481 43.478 0.00 0.00 35.03 2.71
509 510 4.019411 CCCCCAAAGAATTTAGCCACATTT 60.019 41.667 0.00 0.00 35.03 2.32
510 511 5.514659 CCCCCAAAGAATTTAGCCACATTTT 60.515 40.000 0.00 0.00 35.03 1.82
511 512 5.643348 CCCCAAAGAATTTAGCCACATTTTC 59.357 40.000 0.00 0.00 35.03 2.29
512 513 5.643348 CCCAAAGAATTTAGCCACATTTTCC 59.357 40.000 0.00 0.00 35.03 3.13
513 514 5.643348 CCAAAGAATTTAGCCACATTTTCCC 59.357 40.000 0.00 0.00 35.03 3.97
514 515 6.466812 CAAAGAATTTAGCCACATTTTCCCT 58.533 36.000 0.00 0.00 35.03 4.20
515 516 5.921962 AGAATTTAGCCACATTTTCCCTC 57.078 39.130 0.00 0.00 0.00 4.30
516 517 5.583932 AGAATTTAGCCACATTTTCCCTCT 58.416 37.500 0.00 0.00 0.00 3.69
517 518 6.731467 AGAATTTAGCCACATTTTCCCTCTA 58.269 36.000 0.00 0.00 0.00 2.43
518 519 7.182060 AGAATTTAGCCACATTTTCCCTCTAA 58.818 34.615 0.00 0.00 0.00 2.10
519 520 7.673926 AGAATTTAGCCACATTTTCCCTCTAAA 59.326 33.333 0.00 0.00 0.00 1.85
520 521 7.790782 ATTTAGCCACATTTTCCCTCTAAAA 57.209 32.000 0.00 0.00 31.18 1.52
521 522 6.584185 TTAGCCACATTTTCCCTCTAAAAC 57.416 37.500 0.00 0.00 31.50 2.43
522 523 4.479158 AGCCACATTTTCCCTCTAAAACA 58.521 39.130 0.00 0.00 31.50 2.83
523 524 5.086621 AGCCACATTTTCCCTCTAAAACAT 58.913 37.500 0.00 0.00 31.50 2.71
524 525 5.185828 AGCCACATTTTCCCTCTAAAACATC 59.814 40.000 0.00 0.00 31.50 3.06
525 526 5.185828 GCCACATTTTCCCTCTAAAACATCT 59.814 40.000 0.00 0.00 31.50 2.90
526 527 6.624423 CCACATTTTCCCTCTAAAACATCTG 58.376 40.000 0.00 0.00 31.50 2.90
527 528 6.350445 CCACATTTTCCCTCTAAAACATCTGG 60.350 42.308 0.00 0.00 31.50 3.86
528 529 5.185828 ACATTTTCCCTCTAAAACATCTGGC 59.814 40.000 0.00 0.00 31.50 4.85
529 530 2.691409 TCCCTCTAAAACATCTGGCG 57.309 50.000 0.00 0.00 0.00 5.69
530 531 1.017387 CCCTCTAAAACATCTGGCGC 58.983 55.000 0.00 0.00 0.00 6.53
531 532 1.678728 CCCTCTAAAACATCTGGCGCA 60.679 52.381 10.83 0.00 0.00 6.09
532 533 2.083774 CCTCTAAAACATCTGGCGCAA 58.916 47.619 10.83 0.00 0.00 4.85
533 534 2.684881 CCTCTAAAACATCTGGCGCAAT 59.315 45.455 10.83 0.00 0.00 3.56
534 535 3.488047 CCTCTAAAACATCTGGCGCAATG 60.488 47.826 10.83 12.34 0.00 2.82
535 536 3.081061 TCTAAAACATCTGGCGCAATGT 58.919 40.909 10.83 13.04 37.71 2.71
536 537 2.352503 AAAACATCTGGCGCAATGTC 57.647 45.000 18.65 0.00 35.10 3.06
537 538 0.527565 AAACATCTGGCGCAATGTCC 59.472 50.000 18.65 0.00 35.10 4.02
538 539 0.608856 AACATCTGGCGCAATGTCCA 60.609 50.000 18.65 2.59 35.10 4.02
539 540 1.308069 ACATCTGGCGCAATGTCCAC 61.308 55.000 10.83 0.00 30.35 4.02
540 541 1.750399 ATCTGGCGCAATGTCCACC 60.750 57.895 10.83 0.00 0.00 4.61
541 542 3.803082 CTGGCGCAATGTCCACCG 61.803 66.667 10.83 0.00 0.00 4.94
542 543 4.321966 TGGCGCAATGTCCACCGA 62.322 61.111 10.83 0.00 0.00 4.69
543 544 3.799755 GGCGCAATGTCCACCGAC 61.800 66.667 10.83 0.00 39.66 4.79
544 545 4.147322 GCGCAATGTCCACCGACG 62.147 66.667 0.30 0.00 42.37 5.12
545 546 2.736995 CGCAATGTCCACCGACGT 60.737 61.111 0.00 0.00 42.37 4.34
546 547 2.860293 GCAATGTCCACCGACGTG 59.140 61.111 0.00 0.00 42.37 4.49
547 548 1.959226 GCAATGTCCACCGACGTGT 60.959 57.895 0.00 0.00 42.37 4.49
548 549 1.503818 GCAATGTCCACCGACGTGTT 61.504 55.000 0.00 0.00 42.37 3.32
549 550 0.234625 CAATGTCCACCGACGTGTTG 59.765 55.000 0.00 0.00 42.37 3.33
550 551 0.179067 AATGTCCACCGACGTGTTGT 60.179 50.000 0.00 0.00 42.37 3.32
551 552 0.599204 ATGTCCACCGACGTGTTGTC 60.599 55.000 0.00 0.00 42.37 3.18
558 559 4.021650 GACGTGTTGTCGAAGCCA 57.978 55.556 0.00 0.00 37.96 4.75
559 560 2.303452 GACGTGTTGTCGAAGCCAA 58.697 52.632 0.00 0.00 37.96 4.52
560 561 0.042448 GACGTGTTGTCGAAGCCAAC 60.042 55.000 9.73 9.73 37.96 3.77
561 562 0.741574 ACGTGTTGTCGAAGCCAACA 60.742 50.000 14.12 14.12 36.60 3.33
562 563 0.375454 CGTGTTGTCGAAGCCAACAA 59.625 50.000 18.31 1.70 40.00 2.83
563 564 1.822581 GTGTTGTCGAAGCCAACAAC 58.177 50.000 18.31 13.36 40.00 3.32
564 565 0.736053 TGTTGTCGAAGCCAACAACC 59.264 50.000 15.36 0.00 36.11 3.77
565 566 0.030235 GTTGTCGAAGCCAACAACCC 59.970 55.000 11.34 0.00 0.00 4.11
566 567 1.104577 TTGTCGAAGCCAACAACCCC 61.105 55.000 0.00 0.00 0.00 4.95
567 568 1.228154 GTCGAAGCCAACAACCCCT 60.228 57.895 0.00 0.00 0.00 4.79
568 569 0.035739 GTCGAAGCCAACAACCCCTA 59.964 55.000 0.00 0.00 0.00 3.53
569 570 0.766131 TCGAAGCCAACAACCCCTAA 59.234 50.000 0.00 0.00 0.00 2.69
570 571 0.879090 CGAAGCCAACAACCCCTAAC 59.121 55.000 0.00 0.00 0.00 2.34
571 572 1.816183 CGAAGCCAACAACCCCTAACA 60.816 52.381 0.00 0.00 0.00 2.41
572 573 1.611977 GAAGCCAACAACCCCTAACAC 59.388 52.381 0.00 0.00 0.00 3.32
573 574 0.536460 AGCCAACAACCCCTAACACG 60.536 55.000 0.00 0.00 0.00 4.49
574 575 0.535553 GCCAACAACCCCTAACACGA 60.536 55.000 0.00 0.00 0.00 4.35
575 576 1.970092 CCAACAACCCCTAACACGAA 58.030 50.000 0.00 0.00 0.00 3.85
576 577 1.605232 CCAACAACCCCTAACACGAAC 59.395 52.381 0.00 0.00 0.00 3.95
577 578 2.290464 CAACAACCCCTAACACGAACA 58.710 47.619 0.00 0.00 0.00 3.18
578 579 2.683867 CAACAACCCCTAACACGAACAA 59.316 45.455 0.00 0.00 0.00 2.83
579 580 2.291365 ACAACCCCTAACACGAACAAC 58.709 47.619 0.00 0.00 0.00 3.32
589 590 2.897846 CGAACAACGTGCACCCCA 60.898 61.111 12.15 0.00 37.22 4.96
590 591 2.258013 CGAACAACGTGCACCCCAT 61.258 57.895 12.15 0.00 37.22 4.00
591 592 1.579429 GAACAACGTGCACCCCATC 59.421 57.895 12.15 0.00 0.00 3.51
592 593 0.889186 GAACAACGTGCACCCCATCT 60.889 55.000 12.15 0.00 0.00 2.90
593 594 0.889186 AACAACGTGCACCCCATCTC 60.889 55.000 12.15 0.00 0.00 2.75
594 595 1.003355 CAACGTGCACCCCATCTCT 60.003 57.895 12.15 0.00 0.00 3.10
595 596 1.021390 CAACGTGCACCCCATCTCTC 61.021 60.000 12.15 0.00 0.00 3.20
596 597 1.194781 AACGTGCACCCCATCTCTCT 61.195 55.000 12.15 0.00 0.00 3.10
597 598 1.194781 ACGTGCACCCCATCTCTCTT 61.195 55.000 12.15 0.00 0.00 2.85
598 599 0.742281 CGTGCACCCCATCTCTCTTG 60.742 60.000 12.15 0.00 0.00 3.02
599 600 0.326264 GTGCACCCCATCTCTCTTGT 59.674 55.000 5.22 0.00 0.00 3.16
600 601 0.325933 TGCACCCCATCTCTCTTGTG 59.674 55.000 0.00 0.00 0.00 3.33
601 602 0.326264 GCACCCCATCTCTCTTGTGT 59.674 55.000 0.00 0.00 0.00 3.72
602 603 1.271597 GCACCCCATCTCTCTTGTGTT 60.272 52.381 0.00 0.00 0.00 3.32
603 604 2.430465 CACCCCATCTCTCTTGTGTTG 58.570 52.381 0.00 0.00 0.00 3.33
604 605 2.057922 ACCCCATCTCTCTTGTGTTGT 58.942 47.619 0.00 0.00 0.00 3.32
605 606 2.443255 ACCCCATCTCTCTTGTGTTGTT 59.557 45.455 0.00 0.00 0.00 2.83
606 607 3.117512 ACCCCATCTCTCTTGTGTTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
607 608 4.104102 ACCCCATCTCTCTTGTGTTGTTTA 59.896 41.667 0.00 0.00 0.00 2.01
608 609 5.222130 ACCCCATCTCTCTTGTGTTGTTTAT 60.222 40.000 0.00 0.00 0.00 1.40
609 610 5.355350 CCCCATCTCTCTTGTGTTGTTTATC 59.645 44.000 0.00 0.00 0.00 1.75
610 611 6.176183 CCCATCTCTCTTGTGTTGTTTATCT 58.824 40.000 0.00 0.00 0.00 1.98
611 612 6.656693 CCCATCTCTCTTGTGTTGTTTATCTT 59.343 38.462 0.00 0.00 0.00 2.40
612 613 7.175641 CCCATCTCTCTTGTGTTGTTTATCTTT 59.824 37.037 0.00 0.00 0.00 2.52
613 614 8.233190 CCATCTCTCTTGTGTTGTTTATCTTTC 58.767 37.037 0.00 0.00 0.00 2.62
614 615 8.997323 CATCTCTCTTGTGTTGTTTATCTTTCT 58.003 33.333 0.00 0.00 0.00 2.52
615 616 8.964476 TCTCTCTTGTGTTGTTTATCTTTCTT 57.036 30.769 0.00 0.00 0.00 2.52
616 617 9.396022 TCTCTCTTGTGTTGTTTATCTTTCTTT 57.604 29.630 0.00 0.00 0.00 2.52
649 650 2.815657 TTGCGTATTGTGCAATACCG 57.184 45.000 22.06 18.51 46.62 4.02
650 651 0.375454 TGCGTATTGTGCAATACCGC 59.625 50.000 25.85 25.85 46.34 5.68
651 652 0.375454 GCGTATTGTGCAATACCGCA 59.625 50.000 26.66 2.22 46.34 5.69
657 658 3.674906 TGCAATACCGCACAACCC 58.325 55.556 0.00 0.00 36.86 4.11
658 659 2.328856 TGCAATACCGCACAACCCG 61.329 57.895 0.00 0.00 36.86 5.28
659 660 2.329614 GCAATACCGCACAACCCGT 61.330 57.895 0.00 0.00 0.00 5.28
660 661 1.791662 CAATACCGCACAACCCGTC 59.208 57.895 0.00 0.00 0.00 4.79
661 662 1.738830 AATACCGCACAACCCGTCG 60.739 57.895 0.00 0.00 0.00 5.12
666 667 3.799755 GCACAACCCGTCGCCATC 61.800 66.667 0.00 0.00 0.00 3.51
667 668 2.358125 CACAACCCGTCGCCATCA 60.358 61.111 0.00 0.00 0.00 3.07
668 669 2.047274 ACAACCCGTCGCCATCAG 60.047 61.111 0.00 0.00 0.00 2.90
669 670 2.264480 CAACCCGTCGCCATCAGA 59.736 61.111 0.00 0.00 0.00 3.27
670 671 2.100631 CAACCCGTCGCCATCAGAC 61.101 63.158 0.00 0.00 35.41 3.51
671 672 3.310860 AACCCGTCGCCATCAGACC 62.311 63.158 0.00 0.00 35.33 3.85
672 673 4.530857 CCCGTCGCCATCAGACCC 62.531 72.222 0.00 0.00 35.33 4.46
673 674 3.770040 CCGTCGCCATCAGACCCA 61.770 66.667 0.00 0.00 35.33 4.51
674 675 2.501128 CGTCGCCATCAGACCCAT 59.499 61.111 0.00 0.00 35.33 4.00
675 676 1.153369 CGTCGCCATCAGACCCATT 60.153 57.895 0.00 0.00 35.33 3.16
676 677 0.744414 CGTCGCCATCAGACCCATTT 60.744 55.000 0.00 0.00 35.33 2.32
677 678 1.463674 GTCGCCATCAGACCCATTTT 58.536 50.000 0.00 0.00 32.78 1.82
678 679 1.133025 GTCGCCATCAGACCCATTTTG 59.867 52.381 0.00 0.00 32.78 2.44
679 680 0.457035 CGCCATCAGACCCATTTTGG 59.543 55.000 0.00 0.00 37.25 3.28
680 681 1.560505 GCCATCAGACCCATTTTGGT 58.439 50.000 0.00 0.00 42.79 3.67
681 682 1.205417 GCCATCAGACCCATTTTGGTG 59.795 52.381 0.00 0.00 39.24 4.17
682 683 2.528564 CCATCAGACCCATTTTGGTGT 58.471 47.619 0.00 0.00 39.24 4.16
684 685 1.327303 TCAGACCCATTTTGGTGTGC 58.673 50.000 2.70 0.00 46.43 4.57
685 686 1.133513 TCAGACCCATTTTGGTGTGCT 60.134 47.619 2.70 0.00 46.43 4.40
686 687 1.270550 CAGACCCATTTTGGTGTGCTC 59.729 52.381 0.00 0.00 42.02 4.26
687 688 0.603065 GACCCATTTTGGTGTGCTCC 59.397 55.000 0.00 0.00 39.24 4.70
688 689 1.178534 ACCCATTTTGGTGTGCTCCG 61.179 55.000 0.00 0.00 37.20 4.63
689 690 1.178534 CCCATTTTGGTGTGCTCCGT 61.179 55.000 0.00 0.00 35.17 4.69
690 691 0.673437 CCATTTTGGTGTGCTCCGTT 59.327 50.000 0.00 0.00 31.35 4.44
691 692 1.883275 CCATTTTGGTGTGCTCCGTTA 59.117 47.619 0.00 0.00 31.35 3.18
692 693 2.095263 CCATTTTGGTGTGCTCCGTTAG 60.095 50.000 0.00 0.00 31.35 2.34
693 694 1.600023 TTTTGGTGTGCTCCGTTAGG 58.400 50.000 0.00 0.00 39.46 2.69
694 695 0.250553 TTTGGTGTGCTCCGTTAGGG 60.251 55.000 0.00 0.00 38.33 3.53
695 696 2.436115 GGTGTGCTCCGTTAGGGC 60.436 66.667 0.00 0.00 38.33 5.19
696 697 2.345991 GTGTGCTCCGTTAGGGCA 59.654 61.111 0.00 0.00 40.00 5.36
699 700 4.445832 TGCTCCGTTAGGGCACTA 57.554 55.556 0.00 0.00 38.30 2.74
700 701 2.673685 TGCTCCGTTAGGGCACTAA 58.326 52.632 3.71 3.71 38.30 2.24
726 727 1.402325 GCCAACACGCCCAAAGATTAC 60.402 52.381 0.00 0.00 0.00 1.89
733 734 1.544724 GCCCAAAGATTACAGCCACA 58.455 50.000 0.00 0.00 0.00 4.17
734 735 1.202348 GCCCAAAGATTACAGCCACAC 59.798 52.381 0.00 0.00 0.00 3.82
735 736 2.795329 CCCAAAGATTACAGCCACACT 58.205 47.619 0.00 0.00 0.00 3.55
736 737 3.872240 GCCCAAAGATTACAGCCACACTA 60.872 47.826 0.00 0.00 0.00 2.74
737 738 4.331968 CCCAAAGATTACAGCCACACTAA 58.668 43.478 0.00 0.00 0.00 2.24
738 739 4.764823 CCCAAAGATTACAGCCACACTAAA 59.235 41.667 0.00 0.00 0.00 1.85
766 767 3.003275 ACAAAGCAAAGAAGCGATCGAAA 59.997 39.130 21.57 0.00 40.15 3.46
767 768 3.896648 AAGCAAAGAAGCGATCGAAAA 57.103 38.095 21.57 0.00 40.15 2.29
768 769 3.896648 AGCAAAGAAGCGATCGAAAAA 57.103 38.095 21.57 0.00 40.15 1.94
793 794 7.440523 AAATATGTTGACCACACTTCTCTTC 57.559 36.000 0.00 0.00 38.61 2.87
907 912 4.457496 CCAGCGAGGTGGTGCGAT 62.457 66.667 12.77 0.00 44.80 4.58
1048 1065 1.077787 CCGCATTTCCCACCAGCTA 60.078 57.895 0.00 0.00 0.00 3.32
1081 1098 3.515286 GCGCCACAGCAGCATCAT 61.515 61.111 0.00 0.00 39.83 2.45
1193 1536 1.075979 CCGTGGCATTTAAAAGCGCC 61.076 55.000 15.98 15.98 45.11 6.53
1194 1537 1.075979 CGTGGCATTTAAAAGCGCCC 61.076 55.000 18.65 11.74 44.22 6.13
1226 1570 2.593436 CACCCCACACCGTCAACC 60.593 66.667 0.00 0.00 0.00 3.77
1258 1607 4.636435 ACCCCAGACCAAACGCGG 62.636 66.667 12.47 0.00 0.00 6.46
1563 1925 5.131067 CCACAGATCCAGATTCATGTGAAT 58.869 41.667 16.72 7.91 46.54 2.57
1591 1955 1.374252 TCGCGTGCTTTCCCTTCTC 60.374 57.895 5.77 0.00 0.00 2.87
1594 1958 0.884704 GCGTGCTTTCCCTTCTCACA 60.885 55.000 0.00 0.00 0.00 3.58
1725 2099 3.753797 TCTCGCATCAGCTAGTATACCAG 59.246 47.826 0.00 0.00 39.10 4.00
1790 2164 1.086696 AGCGCGATGTAATTTGCACT 58.913 45.000 12.10 0.00 0.00 4.40
1791 2165 1.062587 AGCGCGATGTAATTTGCACTC 59.937 47.619 12.10 0.00 0.00 3.51
1792 2166 1.202020 GCGCGATGTAATTTGCACTCA 60.202 47.619 12.10 0.00 0.00 3.41
1793 2167 2.697363 CGCGATGTAATTTGCACTCAG 58.303 47.619 0.00 0.00 0.00 3.35
1794 2168 2.444351 GCGATGTAATTTGCACTCAGC 58.556 47.619 0.00 0.00 45.96 4.26
1795 2169 2.096496 GCGATGTAATTTGCACTCAGCT 59.904 45.455 0.00 0.00 45.94 4.24
1796 2170 3.309682 GCGATGTAATTTGCACTCAGCTA 59.690 43.478 0.00 0.00 45.94 3.32
1797 2171 4.024556 GCGATGTAATTTGCACTCAGCTAT 60.025 41.667 0.00 0.00 45.94 2.97
1798 2172 5.438117 CGATGTAATTTGCACTCAGCTATG 58.562 41.667 0.00 0.00 45.94 2.23
1799 2173 4.621068 TGTAATTTGCACTCAGCTATGC 57.379 40.909 9.31 9.31 45.94 3.14
1802 2176 4.213666 TGCACTCAGCTATGCAGC 57.786 55.556 13.80 3.38 46.63 5.25
1958 2403 6.968904 GCTTATACATTGTCATGTTTGTCTGG 59.031 38.462 0.00 0.00 41.16 3.86
1974 2419 3.646162 TGTCTGGTCCACACTTCAACTAT 59.354 43.478 0.00 0.00 0.00 2.12
1975 2420 4.102524 TGTCTGGTCCACACTTCAACTATT 59.897 41.667 0.00 0.00 0.00 1.73
1979 2430 4.041075 TGGTCCACACTTCAACTATTAGCA 59.959 41.667 0.00 0.00 0.00 3.49
1983 2434 6.149474 GTCCACACTTCAACTATTAGCACAAT 59.851 38.462 0.00 0.00 0.00 2.71
2065 2516 1.213537 CATTTGTGGCAAGGCTCGG 59.786 57.895 0.00 0.00 0.00 4.63
2176 2627 0.609131 ATGGCACCACTTTCCTTCCG 60.609 55.000 0.00 0.00 0.00 4.30
2177 2628 2.626780 GGCACCACTTTCCTTCCGC 61.627 63.158 0.00 0.00 0.00 5.54
2202 2653 7.326645 CAATAAAACAACAACACATCGACAAC 58.673 34.615 0.00 0.00 0.00 3.32
2203 2654 2.730183 ACAACAACACATCGACAACG 57.270 45.000 0.00 0.00 41.26 4.10
2334 2785 4.415150 AGTGGCCATGCAGACGGG 62.415 66.667 9.72 0.00 0.00 5.28
2434 2885 4.516698 TCAGTCATCAGAAAACTTTCAGGC 59.483 41.667 5.07 0.00 39.61 4.85
2534 2985 3.476295 TTGCGATTTCAGCATCTTGAC 57.524 42.857 0.00 0.00 44.74 3.18
2542 2993 2.430465 TCAGCATCTTGACCTTTCTGC 58.570 47.619 0.00 0.00 0.00 4.26
2548 2999 1.768275 TCTTGACCTTTCTGCTCACCA 59.232 47.619 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.725641 AAAAAGGTTGCCGCCGTC 59.274 55.556 0.00 0.00 0.00 4.79
14 15 4.399004 ACTACAATGGTTGCAGCAAAAA 57.601 36.364 10.11 0.91 0.00 1.94
15 16 4.399004 AACTACAATGGTTGCAGCAAAA 57.601 36.364 10.11 1.32 0.00 2.44
16 17 4.399004 AAACTACAATGGTTGCAGCAAA 57.601 36.364 10.11 0.00 0.00 3.68
17 18 4.399004 AAAACTACAATGGTTGCAGCAA 57.601 36.364 2.83 2.83 0.00 3.91
18 19 4.118410 CAAAAACTACAATGGTTGCAGCA 58.882 39.130 2.05 0.00 0.00 4.41
19 20 3.059665 GCAAAAACTACAATGGTTGCAGC 60.060 43.478 0.00 0.00 40.74 5.25
20 21 4.370917 AGCAAAAACTACAATGGTTGCAG 58.629 39.130 8.69 0.00 42.90 4.41
21 22 4.399004 AGCAAAAACTACAATGGTTGCA 57.601 36.364 8.69 0.00 42.90 4.08
22 23 4.381566 CGTAGCAAAAACTACAATGGTTGC 59.618 41.667 0.00 0.00 42.23 4.17
23 24 5.516090 ACGTAGCAAAAACTACAATGGTTG 58.484 37.500 0.00 0.00 42.23 3.77
24 25 5.278120 GGACGTAGCAAAAACTACAATGGTT 60.278 40.000 0.00 0.00 42.23 3.67
25 26 4.214758 GGACGTAGCAAAAACTACAATGGT 59.785 41.667 0.00 0.00 42.23 3.55
26 27 4.668177 CGGACGTAGCAAAAACTACAATGG 60.668 45.833 0.00 0.00 42.23 3.16
27 28 4.084223 ACGGACGTAGCAAAAACTACAATG 60.084 41.667 0.00 0.00 42.23 2.82
28 29 4.060205 ACGGACGTAGCAAAAACTACAAT 58.940 39.130 0.00 0.00 42.23 2.71
29 30 3.456280 ACGGACGTAGCAAAAACTACAA 58.544 40.909 0.00 0.00 42.23 2.41
30 31 3.052036 GACGGACGTAGCAAAAACTACA 58.948 45.455 0.00 0.00 42.23 2.74
31 32 2.089581 CGACGGACGTAGCAAAAACTAC 59.910 50.000 0.00 0.00 39.35 2.73
32 33 2.031245 TCGACGGACGTAGCAAAAACTA 60.031 45.455 0.00 0.00 43.13 2.24
33 34 1.134226 CGACGGACGTAGCAAAAACT 58.866 50.000 0.00 0.00 37.22 2.66
34 35 1.130955 TCGACGGACGTAGCAAAAAC 58.869 50.000 0.00 0.00 43.13 2.43
35 36 1.788308 CTTCGACGGACGTAGCAAAAA 59.212 47.619 0.00 0.00 43.13 1.94
36 37 1.001487 TCTTCGACGGACGTAGCAAAA 60.001 47.619 0.00 0.00 43.13 2.44
37 38 0.592637 TCTTCGACGGACGTAGCAAA 59.407 50.000 0.00 0.00 43.13 3.68
38 39 0.806868 ATCTTCGACGGACGTAGCAA 59.193 50.000 0.00 0.00 43.13 3.91
39 40 0.806868 AATCTTCGACGGACGTAGCA 59.193 50.000 0.00 0.00 43.13 3.49
40 41 1.905449 AAATCTTCGACGGACGTAGC 58.095 50.000 0.00 0.00 43.13 3.58
41 42 3.481467 GCAAAAATCTTCGACGGACGTAG 60.481 47.826 0.00 0.00 43.13 3.51
42 43 2.409378 GCAAAAATCTTCGACGGACGTA 59.591 45.455 0.00 0.00 43.13 3.57
43 44 1.193874 GCAAAAATCTTCGACGGACGT 59.806 47.619 0.00 0.00 43.13 4.34
44 45 1.459592 AGCAAAAATCTTCGACGGACG 59.540 47.619 0.00 0.00 44.09 4.79
45 46 3.430895 TGTAGCAAAAATCTTCGACGGAC 59.569 43.478 0.00 0.00 0.00 4.79
46 47 3.655486 TGTAGCAAAAATCTTCGACGGA 58.345 40.909 0.00 0.00 0.00 4.69
47 48 4.092821 TGATGTAGCAAAAATCTTCGACGG 59.907 41.667 0.00 0.00 0.00 4.79
48 49 5.203358 TGATGTAGCAAAAATCTTCGACG 57.797 39.130 0.00 0.00 0.00 5.12
49 50 8.452989 AAAATGATGTAGCAAAAATCTTCGAC 57.547 30.769 0.00 0.00 0.00 4.20
72 73 1.614903 CTGCAGCTCCACCATGAAAAA 59.385 47.619 0.00 0.00 0.00 1.94
73 74 1.250328 CTGCAGCTCCACCATGAAAA 58.750 50.000 0.00 0.00 0.00 2.29
74 75 0.609957 CCTGCAGCTCCACCATGAAA 60.610 55.000 8.66 0.00 0.00 2.69
75 76 1.001764 CCTGCAGCTCCACCATGAA 60.002 57.895 8.66 0.00 0.00 2.57
76 77 2.672908 CCTGCAGCTCCACCATGA 59.327 61.111 8.66 0.00 0.00 3.07
77 78 3.138798 GCCTGCAGCTCCACCATG 61.139 66.667 8.66 0.00 38.99 3.66
94 95 4.554363 ATCTTCGCCGCCGTCGAG 62.554 66.667 0.00 0.00 37.26 4.04
95 96 4.847516 CATCTTCGCCGCCGTCGA 62.848 66.667 0.00 0.00 38.10 4.20
96 97 4.847516 TCATCTTCGCCGCCGTCG 62.848 66.667 0.00 0.00 35.54 5.12
97 98 1.429148 AAATCATCTTCGCCGCCGTC 61.429 55.000 0.00 0.00 35.54 4.79
98 99 1.024579 AAAATCATCTTCGCCGCCGT 61.025 50.000 0.00 0.00 35.54 5.68
99 100 0.589729 CAAAATCATCTTCGCCGCCG 60.590 55.000 0.00 0.00 0.00 6.46
100 101 0.451783 ACAAAATCATCTTCGCCGCC 59.548 50.000 0.00 0.00 0.00 6.13
101 102 1.135689 ACACAAAATCATCTTCGCCGC 60.136 47.619 0.00 0.00 0.00 6.53
102 103 2.900122 ACACAAAATCATCTTCGCCG 57.100 45.000 0.00 0.00 0.00 6.46
103 104 2.663119 GCAACACAAAATCATCTTCGCC 59.337 45.455 0.00 0.00 0.00 5.54
104 105 3.307674 TGCAACACAAAATCATCTTCGC 58.692 40.909 0.00 0.00 0.00 4.70
105 106 4.977963 AGTTGCAACACAAAATCATCTTCG 59.022 37.500 30.11 0.00 40.82 3.79
106 107 5.750067 ACAGTTGCAACACAAAATCATCTTC 59.250 36.000 30.11 0.00 40.82 2.87
107 108 5.663456 ACAGTTGCAACACAAAATCATCTT 58.337 33.333 30.11 2.79 40.82 2.40
108 109 5.163530 TGACAGTTGCAACACAAAATCATCT 60.164 36.000 30.11 3.00 40.82 2.90
109 110 5.042593 TGACAGTTGCAACACAAAATCATC 58.957 37.500 30.11 13.60 40.82 2.92
110 111 5.008619 TGACAGTTGCAACACAAAATCAT 57.991 34.783 30.11 4.32 40.82 2.45
111 112 4.446994 TGACAGTTGCAACACAAAATCA 57.553 36.364 30.11 19.14 40.82 2.57
112 113 5.971895 AATGACAGTTGCAACACAAAATC 57.028 34.783 30.11 17.09 40.82 2.17
113 114 6.108015 AGAAATGACAGTTGCAACACAAAAT 58.892 32.000 30.11 14.24 40.82 1.82
114 115 5.477510 AGAAATGACAGTTGCAACACAAAA 58.522 33.333 30.11 12.62 40.82 2.44
115 116 5.070770 AGAAATGACAGTTGCAACACAAA 57.929 34.783 30.11 14.01 40.82 2.83
116 117 4.717233 AGAAATGACAGTTGCAACACAA 57.283 36.364 30.11 13.66 35.33 3.33
117 118 4.717233 AAGAAATGACAGTTGCAACACA 57.283 36.364 30.11 24.39 0.00 3.72
118 119 6.242829 CAAAAAGAAATGACAGTTGCAACAC 58.757 36.000 30.11 20.14 0.00 3.32
119 120 5.163874 GCAAAAAGAAATGACAGTTGCAACA 60.164 36.000 30.11 11.12 39.65 3.33
120 121 5.063817 AGCAAAAAGAAATGACAGTTGCAAC 59.936 36.000 22.17 22.17 41.73 4.17
121 122 5.177326 AGCAAAAAGAAATGACAGTTGCAA 58.823 33.333 0.00 0.00 41.73 4.08
122 123 4.757594 AGCAAAAAGAAATGACAGTTGCA 58.242 34.783 8.05 0.00 41.73 4.08
123 124 5.108254 CGTAGCAAAAAGAAATGACAGTTGC 60.108 40.000 0.00 0.00 40.05 4.17
124 125 6.140737 GTCGTAGCAAAAAGAAATGACAGTTG 59.859 38.462 0.00 0.00 0.00 3.16
125 126 6.199393 GTCGTAGCAAAAAGAAATGACAGTT 58.801 36.000 0.00 0.00 0.00 3.16
126 127 5.277828 GGTCGTAGCAAAAAGAAATGACAGT 60.278 40.000 0.00 0.00 0.00 3.55
127 128 5.049405 AGGTCGTAGCAAAAAGAAATGACAG 60.049 40.000 0.00 0.00 0.00 3.51
128 129 4.819630 AGGTCGTAGCAAAAAGAAATGACA 59.180 37.500 0.00 0.00 0.00 3.58
129 130 5.358298 AGGTCGTAGCAAAAAGAAATGAC 57.642 39.130 0.00 0.00 0.00 3.06
130 131 6.093495 CCATAGGTCGTAGCAAAAAGAAATGA 59.907 38.462 0.00 0.00 0.00 2.57
131 132 6.093495 TCCATAGGTCGTAGCAAAAAGAAATG 59.907 38.462 0.00 0.00 0.00 2.32
132 133 6.177610 TCCATAGGTCGTAGCAAAAAGAAAT 58.822 36.000 0.00 0.00 0.00 2.17
133 134 5.553123 TCCATAGGTCGTAGCAAAAAGAAA 58.447 37.500 0.00 0.00 0.00 2.52
134 135 5.155278 TCCATAGGTCGTAGCAAAAAGAA 57.845 39.130 0.00 0.00 0.00 2.52
135 136 4.222145 ACTCCATAGGTCGTAGCAAAAAGA 59.778 41.667 0.00 0.00 0.00 2.52
136 137 4.504858 ACTCCATAGGTCGTAGCAAAAAG 58.495 43.478 0.00 0.00 0.00 2.27
137 138 4.546829 ACTCCATAGGTCGTAGCAAAAA 57.453 40.909 0.00 0.00 0.00 1.94
138 139 4.546829 AACTCCATAGGTCGTAGCAAAA 57.453 40.909 0.00 0.00 0.00 2.44
139 140 4.546829 AAACTCCATAGGTCGTAGCAAA 57.453 40.909 0.00 0.00 0.00 3.68
140 141 4.546829 AAAACTCCATAGGTCGTAGCAA 57.453 40.909 0.00 0.00 0.00 3.91
141 142 4.250464 CAAAAACTCCATAGGTCGTAGCA 58.750 43.478 0.00 0.00 0.00 3.49
142 143 3.063588 GCAAAAACTCCATAGGTCGTAGC 59.936 47.826 0.00 0.00 0.00 3.58
143 144 4.504858 AGCAAAAACTCCATAGGTCGTAG 58.495 43.478 0.00 0.00 0.00 3.51
144 145 4.546829 AGCAAAAACTCCATAGGTCGTA 57.453 40.909 0.00 0.00 0.00 3.43
145 146 3.418684 AGCAAAAACTCCATAGGTCGT 57.581 42.857 0.00 0.00 0.00 4.34
146 147 4.250464 TGTAGCAAAAACTCCATAGGTCG 58.750 43.478 0.00 0.00 0.00 4.79
147 148 6.821665 TGTATGTAGCAAAAACTCCATAGGTC 59.178 38.462 0.00 0.00 0.00 3.85
148 149 6.717289 TGTATGTAGCAAAAACTCCATAGGT 58.283 36.000 0.00 0.00 0.00 3.08
149 150 7.807977 ATGTATGTAGCAAAAACTCCATAGG 57.192 36.000 0.00 0.00 0.00 2.57
150 151 8.892723 TGAATGTATGTAGCAAAAACTCCATAG 58.107 33.333 0.00 0.00 0.00 2.23
151 152 8.800370 TGAATGTATGTAGCAAAAACTCCATA 57.200 30.769 0.00 0.00 0.00 2.74
152 153 7.701539 TGAATGTATGTAGCAAAAACTCCAT 57.298 32.000 0.00 0.00 0.00 3.41
153 154 7.701539 ATGAATGTATGTAGCAAAAACTCCA 57.298 32.000 0.00 0.00 0.00 3.86
154 155 8.986477 AAATGAATGTATGTAGCAAAAACTCC 57.014 30.769 0.00 0.00 0.00 3.85
187 188 1.896220 AGCACGCCATCTCAGAAAAA 58.104 45.000 0.00 0.00 0.00 1.94
188 189 1.806542 GAAGCACGCCATCTCAGAAAA 59.193 47.619 0.00 0.00 0.00 2.29
189 190 1.270785 TGAAGCACGCCATCTCAGAAA 60.271 47.619 0.00 0.00 0.00 2.52
190 191 0.321346 TGAAGCACGCCATCTCAGAA 59.679 50.000 0.00 0.00 0.00 3.02
191 192 0.538584 ATGAAGCACGCCATCTCAGA 59.461 50.000 0.00 0.00 0.00 3.27
192 193 0.935898 GATGAAGCACGCCATCTCAG 59.064 55.000 0.00 0.00 36.97 3.35
193 194 0.538584 AGATGAAGCACGCCATCTCA 59.461 50.000 5.32 0.00 44.28 3.27
194 195 2.515926 TAGATGAAGCACGCCATCTC 57.484 50.000 12.27 1.10 44.28 2.75
196 197 3.059325 GTCATTAGATGAAGCACGCCATC 60.059 47.826 0.00 0.00 41.69 3.51
197 198 2.874701 GTCATTAGATGAAGCACGCCAT 59.125 45.455 0.00 0.00 41.69 4.40
198 199 2.279741 GTCATTAGATGAAGCACGCCA 58.720 47.619 0.00 0.00 41.69 5.69
199 200 2.279741 TGTCATTAGATGAAGCACGCC 58.720 47.619 0.00 0.00 41.69 5.68
200 201 3.190079 TCTGTCATTAGATGAAGCACGC 58.810 45.455 0.00 0.00 41.69 5.34
201 202 5.005203 GTCTTCTGTCATTAGATGAAGCACG 59.995 44.000 0.00 0.00 41.69 5.34
202 203 5.005203 CGTCTTCTGTCATTAGATGAAGCAC 59.995 44.000 0.00 0.00 41.69 4.40
203 204 5.105063 CGTCTTCTGTCATTAGATGAAGCA 58.895 41.667 0.00 0.00 41.69 3.91
204 205 4.505922 CCGTCTTCTGTCATTAGATGAAGC 59.494 45.833 0.00 0.00 41.69 3.86
205 206 4.505922 GCCGTCTTCTGTCATTAGATGAAG 59.494 45.833 0.00 0.00 41.69 3.02
206 207 4.433615 GCCGTCTTCTGTCATTAGATGAA 58.566 43.478 0.00 0.00 41.69 2.57
207 208 3.489229 CGCCGTCTTCTGTCATTAGATGA 60.489 47.826 0.00 0.00 36.84 2.92
208 209 2.791560 CGCCGTCTTCTGTCATTAGATG 59.208 50.000 0.00 0.00 0.00 2.90
209 210 2.427453 ACGCCGTCTTCTGTCATTAGAT 59.573 45.455 0.00 0.00 0.00 1.98
210 211 1.816835 ACGCCGTCTTCTGTCATTAGA 59.183 47.619 0.00 0.00 0.00 2.10
211 212 1.920574 CACGCCGTCTTCTGTCATTAG 59.079 52.381 0.00 0.00 0.00 1.73
212 213 1.271379 ACACGCCGTCTTCTGTCATTA 59.729 47.619 0.00 0.00 0.00 1.90
213 214 0.033504 ACACGCCGTCTTCTGTCATT 59.966 50.000 0.00 0.00 0.00 2.57
214 215 0.667487 CACACGCCGTCTTCTGTCAT 60.667 55.000 0.00 0.00 0.00 3.06
215 216 1.299850 CACACGCCGTCTTCTGTCA 60.300 57.895 0.00 0.00 0.00 3.58
216 217 2.658707 GCACACGCCGTCTTCTGTC 61.659 63.158 0.00 0.00 0.00 3.51
217 218 2.661866 GCACACGCCGTCTTCTGT 60.662 61.111 0.00 0.00 0.00 3.41
218 219 3.767230 CGCACACGCCGTCTTCTG 61.767 66.667 0.00 0.00 33.11 3.02
227 228 4.980805 TTGGTCTCCCGCACACGC 62.981 66.667 0.00 0.00 38.22 5.34
228 229 3.041940 GTTGGTCTCCCGCACACG 61.042 66.667 0.00 0.00 39.67 4.49
229 230 3.041940 CGTTGGTCTCCCGCACAC 61.042 66.667 0.00 0.00 0.00 3.82
230 231 4.980805 GCGTTGGTCTCCCGCACA 62.981 66.667 0.00 0.00 46.26 4.57
257 258 4.016706 CACGTCCTCCCCCACACC 62.017 72.222 0.00 0.00 0.00 4.16
258 259 4.016706 CCACGTCCTCCCCCACAC 62.017 72.222 0.00 0.00 0.00 3.82
264 265 4.394712 CAGCACCCACGTCCTCCC 62.395 72.222 0.00 0.00 0.00 4.30
310 311 4.416738 GTCTCTGCCCCAGCCACC 62.417 72.222 0.00 0.00 38.69 4.61
311 312 2.883267 GATGTCTCTGCCCCAGCCAC 62.883 65.000 0.00 0.00 38.69 5.01
312 313 2.611800 ATGTCTCTGCCCCAGCCA 60.612 61.111 0.00 0.00 38.69 4.75
313 314 2.191641 GATGTCTCTGCCCCAGCC 59.808 66.667 0.00 0.00 38.69 4.85
314 315 1.145819 GAGATGTCTCTGCCCCAGC 59.854 63.158 2.80 0.00 39.81 4.85
315 316 0.177604 GTGAGATGTCTCTGCCCCAG 59.822 60.000 11.03 0.00 43.25 4.45
316 317 0.545071 TGTGAGATGTCTCTGCCCCA 60.545 55.000 11.03 0.00 43.25 4.96
317 318 0.835941 ATGTGAGATGTCTCTGCCCC 59.164 55.000 11.03 0.00 43.25 5.80
318 319 1.537776 CGATGTGAGATGTCTCTGCCC 60.538 57.143 11.03 0.00 43.25 5.36
319 320 1.537776 CCGATGTGAGATGTCTCTGCC 60.538 57.143 11.03 1.03 43.25 4.85
320 321 1.406898 TCCGATGTGAGATGTCTCTGC 59.593 52.381 11.03 5.24 43.25 4.26
321 322 2.540565 CGTCCGATGTGAGATGTCTCTG 60.541 54.545 11.03 0.00 43.25 3.35
322 323 1.673400 CGTCCGATGTGAGATGTCTCT 59.327 52.381 11.03 0.00 43.25 3.10
323 324 1.671328 TCGTCCGATGTGAGATGTCTC 59.329 52.381 3.07 3.07 43.15 3.36
324 325 1.673400 CTCGTCCGATGTGAGATGTCT 59.327 52.381 0.00 0.00 31.31 3.41
325 326 1.402259 ACTCGTCCGATGTGAGATGTC 59.598 52.381 0.00 0.00 33.93 3.06
326 327 1.133216 CACTCGTCCGATGTGAGATGT 59.867 52.381 11.34 0.00 33.95 3.06
327 328 1.534805 CCACTCGTCCGATGTGAGATG 60.535 57.143 15.79 0.00 33.95 2.90
328 329 0.741326 CCACTCGTCCGATGTGAGAT 59.259 55.000 15.79 0.00 33.95 2.75
329 330 0.322187 TCCACTCGTCCGATGTGAGA 60.322 55.000 15.79 10.75 33.95 3.27
330 331 0.741326 ATCCACTCGTCCGATGTGAG 59.259 55.000 15.79 9.32 33.95 3.51
331 332 0.738975 GATCCACTCGTCCGATGTGA 59.261 55.000 15.79 3.77 33.95 3.58
332 333 0.741326 AGATCCACTCGTCCGATGTG 59.259 55.000 10.36 10.36 0.00 3.21
333 334 0.741326 CAGATCCACTCGTCCGATGT 59.259 55.000 0.00 0.00 0.00 3.06
334 335 1.025041 TCAGATCCACTCGTCCGATG 58.975 55.000 0.00 0.00 0.00 3.84
335 336 1.763968 TTCAGATCCACTCGTCCGAT 58.236 50.000 0.00 0.00 0.00 4.18
336 337 1.201647 GTTTCAGATCCACTCGTCCGA 59.798 52.381 0.00 0.00 0.00 4.55
337 338 1.202582 AGTTTCAGATCCACTCGTCCG 59.797 52.381 0.00 0.00 0.00 4.79
338 339 2.231478 TCAGTTTCAGATCCACTCGTCC 59.769 50.000 0.00 0.00 0.00 4.79
339 340 3.577649 TCAGTTTCAGATCCACTCGTC 57.422 47.619 0.00 0.00 0.00 4.20
340 341 3.306364 CCTTCAGTTTCAGATCCACTCGT 60.306 47.826 0.00 0.00 0.00 4.18
341 342 3.056536 TCCTTCAGTTTCAGATCCACTCG 60.057 47.826 0.00 0.00 0.00 4.18
342 343 4.221703 TCTCCTTCAGTTTCAGATCCACTC 59.778 45.833 0.00 0.00 0.00 3.51
343 344 4.020662 GTCTCCTTCAGTTTCAGATCCACT 60.021 45.833 0.00 0.00 0.00 4.00
344 345 4.249661 GTCTCCTTCAGTTTCAGATCCAC 58.750 47.826 0.00 0.00 0.00 4.02
345 346 3.056536 CGTCTCCTTCAGTTTCAGATCCA 60.057 47.826 0.00 0.00 0.00 3.41
346 347 3.516615 CGTCTCCTTCAGTTTCAGATCC 58.483 50.000 0.00 0.00 0.00 3.36
347 348 3.516615 CCGTCTCCTTCAGTTTCAGATC 58.483 50.000 0.00 0.00 0.00 2.75
348 349 2.234908 CCCGTCTCCTTCAGTTTCAGAT 59.765 50.000 0.00 0.00 0.00 2.90
349 350 1.618837 CCCGTCTCCTTCAGTTTCAGA 59.381 52.381 0.00 0.00 0.00 3.27
350 351 1.338200 CCCCGTCTCCTTCAGTTTCAG 60.338 57.143 0.00 0.00 0.00 3.02
351 352 0.685097 CCCCGTCTCCTTCAGTTTCA 59.315 55.000 0.00 0.00 0.00 2.69
352 353 0.036294 CCCCCGTCTCCTTCAGTTTC 60.036 60.000 0.00 0.00 0.00 2.78
353 354 0.473117 TCCCCCGTCTCCTTCAGTTT 60.473 55.000 0.00 0.00 0.00 2.66
354 355 0.473117 TTCCCCCGTCTCCTTCAGTT 60.473 55.000 0.00 0.00 0.00 3.16
355 356 0.905337 CTTCCCCCGTCTCCTTCAGT 60.905 60.000 0.00 0.00 0.00 3.41
356 357 0.614979 TCTTCCCCCGTCTCCTTCAG 60.615 60.000 0.00 0.00 0.00 3.02
357 358 0.178915 TTCTTCCCCCGTCTCCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
358 359 0.537653 CTTCTTCCCCCGTCTCCTTC 59.462 60.000 0.00 0.00 0.00 3.46
359 360 0.116541 TCTTCTTCCCCCGTCTCCTT 59.883 55.000 0.00 0.00 0.00 3.36
360 361 0.615261 GTCTTCTTCCCCCGTCTCCT 60.615 60.000 0.00 0.00 0.00 3.69
361 362 1.898885 GTCTTCTTCCCCCGTCTCC 59.101 63.158 0.00 0.00 0.00 3.71
362 363 0.964358 TCGTCTTCTTCCCCCGTCTC 60.964 60.000 0.00 0.00 0.00 3.36
363 364 0.324460 ATCGTCTTCTTCCCCCGTCT 60.324 55.000 0.00 0.00 0.00 4.18
364 365 0.179108 CATCGTCTTCTTCCCCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
365 366 0.613853 TCATCGTCTTCTTCCCCCGT 60.614 55.000 0.00 0.00 0.00 5.28
366 367 0.179108 GTCATCGTCTTCTTCCCCCG 60.179 60.000 0.00 0.00 0.00 5.73
367 368 0.179108 CGTCATCGTCTTCTTCCCCC 60.179 60.000 0.00 0.00 0.00 5.40
368 369 3.347411 CGTCATCGTCTTCTTCCCC 57.653 57.895 0.00 0.00 0.00 4.81
379 380 2.184322 CTCACCCCCACGTCATCG 59.816 66.667 0.00 0.00 43.34 3.84
380 381 2.584608 CCTCACCCCCACGTCATC 59.415 66.667 0.00 0.00 0.00 2.92
381 382 3.009115 CCCTCACCCCCACGTCAT 61.009 66.667 0.00 0.00 0.00 3.06
388 389 3.679199 GATTTGCCCCCTCACCCCC 62.679 68.421 0.00 0.00 0.00 5.40
389 390 2.042944 GATTTGCCCCCTCACCCC 60.043 66.667 0.00 0.00 0.00 4.95
390 391 2.440247 CGATTTGCCCCCTCACCC 60.440 66.667 0.00 0.00 0.00 4.61
391 392 1.001393 TTCGATTTGCCCCCTCACC 60.001 57.895 0.00 0.00 0.00 4.02
392 393 1.644786 CGTTCGATTTGCCCCCTCAC 61.645 60.000 0.00 0.00 0.00 3.51
393 394 1.376683 CGTTCGATTTGCCCCCTCA 60.377 57.895 0.00 0.00 0.00 3.86
394 395 2.112815 CCGTTCGATTTGCCCCCTC 61.113 63.158 0.00 0.00 0.00 4.30
395 396 2.045340 CCGTTCGATTTGCCCCCT 60.045 61.111 0.00 0.00 0.00 4.79
396 397 1.974875 AACCGTTCGATTTGCCCCC 60.975 57.895 0.00 0.00 0.00 5.40
397 398 1.211709 CAACCGTTCGATTTGCCCC 59.788 57.895 0.00 0.00 0.00 5.80
398 399 0.312729 AACAACCGTTCGATTTGCCC 59.687 50.000 0.00 0.00 0.00 5.36
399 400 2.128367 AAACAACCGTTCGATTTGCC 57.872 45.000 0.00 0.00 32.91 4.52
400 401 2.655001 GCTAAACAACCGTTCGATTTGC 59.345 45.455 0.00 0.00 32.91 3.68
401 402 3.906008 CAGCTAAACAACCGTTCGATTTG 59.094 43.478 0.00 0.03 32.91 2.32
402 403 3.608474 GCAGCTAAACAACCGTTCGATTT 60.608 43.478 0.00 0.00 32.91 2.17
403 404 2.095919 GCAGCTAAACAACCGTTCGATT 60.096 45.455 0.00 0.00 32.91 3.34
404 405 1.463444 GCAGCTAAACAACCGTTCGAT 59.537 47.619 0.00 0.00 32.91 3.59
405 406 0.863144 GCAGCTAAACAACCGTTCGA 59.137 50.000 0.00 0.00 32.91 3.71
406 407 0.865769 AGCAGCTAAACAACCGTTCG 59.134 50.000 0.00 0.00 32.91 3.95
407 408 1.069227 CCAGCAGCTAAACAACCGTTC 60.069 52.381 0.00 0.00 32.91 3.95
408 409 0.951558 CCAGCAGCTAAACAACCGTT 59.048 50.000 0.00 0.00 36.73 4.44
409 410 0.107831 TCCAGCAGCTAAACAACCGT 59.892 50.000 0.00 0.00 0.00 4.83
410 411 1.398390 GATCCAGCAGCTAAACAACCG 59.602 52.381 0.00 0.00 0.00 4.44
411 412 1.398390 CGATCCAGCAGCTAAACAACC 59.602 52.381 0.00 0.00 0.00 3.77
412 413 1.202076 GCGATCCAGCAGCTAAACAAC 60.202 52.381 0.00 0.00 37.05 3.32
413 414 1.086696 GCGATCCAGCAGCTAAACAA 58.913 50.000 0.00 0.00 37.05 2.83
414 415 0.036483 TGCGATCCAGCAGCTAAACA 60.036 50.000 0.00 0.00 42.92 2.83
415 416 2.767536 TGCGATCCAGCAGCTAAAC 58.232 52.632 0.00 0.00 42.92 2.01
441 442 2.158561 AAATTTGGGCTGGTCGCTGC 62.159 55.000 0.00 0.00 39.13 5.25
442 443 0.388907 CAAATTTGGGCTGGTCGCTG 60.389 55.000 10.49 0.00 39.13 5.18
443 444 1.535204 CCAAATTTGGGCTGGTCGCT 61.535 55.000 26.87 0.00 44.70 4.93
444 445 1.079888 CCAAATTTGGGCTGGTCGC 60.080 57.895 26.87 0.00 44.70 5.19
454 455 1.667510 GTGCACCGGCCCAAATTTG 60.668 57.895 11.40 11.40 40.13 2.32
455 456 2.740438 GTGCACCGGCCCAAATTT 59.260 55.556 5.22 0.00 40.13 1.82
456 457 3.310307 GGTGCACCGGCCCAAATT 61.310 61.111 22.49 0.00 40.13 1.82
467 468 4.830765 TGATAGGCGCCGGTGCAC 62.831 66.667 38.40 27.37 37.32 4.57
468 469 4.529219 CTGATAGGCGCCGGTGCA 62.529 66.667 38.40 22.04 37.32 4.57
476 477 1.526917 CTTTGGGGGCTGATAGGCG 60.527 63.158 0.00 0.00 42.43 5.52
477 478 0.258774 TTCTTTGGGGGCTGATAGGC 59.741 55.000 0.00 0.00 40.51 3.93
478 479 3.319031 AATTCTTTGGGGGCTGATAGG 57.681 47.619 0.00 0.00 0.00 2.57
479 480 4.279420 GCTAAATTCTTTGGGGGCTGATAG 59.721 45.833 0.00 0.00 0.00 2.08
480 481 4.215109 GCTAAATTCTTTGGGGGCTGATA 58.785 43.478 0.00 0.00 0.00 2.15
481 482 3.033909 GCTAAATTCTTTGGGGGCTGAT 58.966 45.455 0.00 0.00 0.00 2.90
482 483 2.456577 GCTAAATTCTTTGGGGGCTGA 58.543 47.619 0.00 0.00 0.00 4.26
483 484 1.482182 GGCTAAATTCTTTGGGGGCTG 59.518 52.381 0.00 0.00 0.00 4.85
484 485 1.078656 TGGCTAAATTCTTTGGGGGCT 59.921 47.619 0.00 0.00 0.00 5.19
485 486 1.207089 GTGGCTAAATTCTTTGGGGGC 59.793 52.381 0.00 0.00 0.00 5.80
486 487 2.534990 TGTGGCTAAATTCTTTGGGGG 58.465 47.619 0.00 0.00 0.00 5.40
487 488 4.824479 AATGTGGCTAAATTCTTTGGGG 57.176 40.909 0.00 0.00 0.00 4.96
488 489 5.643348 GGAAAATGTGGCTAAATTCTTTGGG 59.357 40.000 0.00 0.00 0.00 4.12
489 490 5.643348 GGGAAAATGTGGCTAAATTCTTTGG 59.357 40.000 0.00 0.00 0.00 3.28
490 491 6.466812 AGGGAAAATGTGGCTAAATTCTTTG 58.533 36.000 0.00 0.00 0.00 2.77
491 492 6.498303 AGAGGGAAAATGTGGCTAAATTCTTT 59.502 34.615 0.00 0.00 0.00 2.52
492 493 6.019108 AGAGGGAAAATGTGGCTAAATTCTT 58.981 36.000 0.00 0.00 0.00 2.52
493 494 5.583932 AGAGGGAAAATGTGGCTAAATTCT 58.416 37.500 0.00 0.00 0.00 2.40
494 495 5.921962 AGAGGGAAAATGTGGCTAAATTC 57.078 39.130 0.00 0.00 0.00 2.17
495 496 7.790782 TTTAGAGGGAAAATGTGGCTAAATT 57.209 32.000 0.00 0.00 0.00 1.82
496 497 7.234577 TGTTTTAGAGGGAAAATGTGGCTAAAT 59.765 33.333 0.00 0.00 31.29 1.40
497 498 6.551601 TGTTTTAGAGGGAAAATGTGGCTAAA 59.448 34.615 0.00 0.00 31.29 1.85
498 499 6.071984 TGTTTTAGAGGGAAAATGTGGCTAA 58.928 36.000 0.00 0.00 31.29 3.09
499 500 5.636123 TGTTTTAGAGGGAAAATGTGGCTA 58.364 37.500 0.00 0.00 31.29 3.93
500 501 4.479158 TGTTTTAGAGGGAAAATGTGGCT 58.521 39.130 0.00 0.00 31.29 4.75
501 502 4.864704 TGTTTTAGAGGGAAAATGTGGC 57.135 40.909 0.00 0.00 31.29 5.01
502 503 6.350445 CCAGATGTTTTAGAGGGAAAATGTGG 60.350 42.308 0.00 0.00 31.29 4.17
503 504 6.624423 CCAGATGTTTTAGAGGGAAAATGTG 58.376 40.000 0.00 0.00 31.29 3.21
504 505 5.185828 GCCAGATGTTTTAGAGGGAAAATGT 59.814 40.000 0.00 0.00 31.29 2.71
505 506 5.654497 GCCAGATGTTTTAGAGGGAAAATG 58.346 41.667 0.00 0.00 31.29 2.32
506 507 4.399303 CGCCAGATGTTTTAGAGGGAAAAT 59.601 41.667 0.00 0.00 31.29 1.82
507 508 3.756434 CGCCAGATGTTTTAGAGGGAAAA 59.244 43.478 0.00 0.00 0.00 2.29
508 509 3.343617 CGCCAGATGTTTTAGAGGGAAA 58.656 45.455 0.00 0.00 0.00 3.13
509 510 2.939640 GCGCCAGATGTTTTAGAGGGAA 60.940 50.000 0.00 0.00 0.00 3.97
510 511 1.406887 GCGCCAGATGTTTTAGAGGGA 60.407 52.381 0.00 0.00 0.00 4.20
511 512 1.017387 GCGCCAGATGTTTTAGAGGG 58.983 55.000 0.00 0.00 0.00 4.30
512 513 1.737838 TGCGCCAGATGTTTTAGAGG 58.262 50.000 4.18 0.00 0.00 3.69
513 514 3.127548 ACATTGCGCCAGATGTTTTAGAG 59.872 43.478 4.18 0.00 32.85 2.43
514 515 3.081061 ACATTGCGCCAGATGTTTTAGA 58.919 40.909 4.18 0.00 32.85 2.10
515 516 3.429085 GACATTGCGCCAGATGTTTTAG 58.571 45.455 18.24 0.00 36.67 1.85
516 517 2.163412 GGACATTGCGCCAGATGTTTTA 59.837 45.455 18.24 0.00 36.67 1.52
517 518 1.067635 GGACATTGCGCCAGATGTTTT 60.068 47.619 18.24 1.13 36.67 2.43
518 519 0.527565 GGACATTGCGCCAGATGTTT 59.472 50.000 18.24 1.72 36.67 2.83
519 520 0.608856 TGGACATTGCGCCAGATGTT 60.609 50.000 18.24 6.50 36.67 2.71
520 521 1.002257 TGGACATTGCGCCAGATGT 60.002 52.632 17.52 17.52 39.09 3.06
521 522 1.430632 GTGGACATTGCGCCAGATG 59.569 57.895 4.18 9.47 34.22 2.90
522 523 1.750399 GGTGGACATTGCGCCAGAT 60.750 57.895 4.18 0.00 38.33 2.90
523 524 2.359850 GGTGGACATTGCGCCAGA 60.360 61.111 4.18 0.00 38.33 3.86
524 525 3.803082 CGGTGGACATTGCGCCAG 61.803 66.667 4.18 0.00 38.36 4.85
525 526 4.321966 TCGGTGGACATTGCGCCA 62.322 61.111 4.18 0.00 38.36 5.69
526 527 3.799755 GTCGGTGGACATTGCGCC 61.800 66.667 4.18 0.00 42.91 6.53
527 528 4.147322 CGTCGGTGGACATTGCGC 62.147 66.667 0.00 0.00 43.61 6.09
528 529 2.736995 ACGTCGGTGGACATTGCG 60.737 61.111 0.00 0.00 43.61 4.85
529 530 2.860293 CACGTCGGTGGACATTGC 59.140 61.111 0.00 0.00 43.61 3.56
541 542 2.303452 TTGGCTTCGACAACACGTC 58.697 52.632 0.00 0.00 41.62 4.34
542 543 4.524869 TTGGCTTCGACAACACGT 57.475 50.000 0.00 0.00 34.70 4.49
547 548 1.104577 GGGGTTGTTGGCTTCGACAA 61.105 55.000 0.00 0.00 41.18 3.18
548 549 1.527380 GGGGTTGTTGGCTTCGACA 60.527 57.895 0.00 0.00 33.22 4.35
549 550 0.035739 TAGGGGTTGTTGGCTTCGAC 59.964 55.000 0.00 0.00 0.00 4.20
550 551 0.766131 TTAGGGGTTGTTGGCTTCGA 59.234 50.000 0.00 0.00 0.00 3.71
551 552 0.879090 GTTAGGGGTTGTTGGCTTCG 59.121 55.000 0.00 0.00 0.00 3.79
552 553 1.611977 GTGTTAGGGGTTGTTGGCTTC 59.388 52.381 0.00 0.00 0.00 3.86
553 554 1.699730 GTGTTAGGGGTTGTTGGCTT 58.300 50.000 0.00 0.00 0.00 4.35
554 555 0.536460 CGTGTTAGGGGTTGTTGGCT 60.536 55.000 0.00 0.00 0.00 4.75
555 556 0.535553 TCGTGTTAGGGGTTGTTGGC 60.536 55.000 0.00 0.00 0.00 4.52
556 557 1.605232 GTTCGTGTTAGGGGTTGTTGG 59.395 52.381 0.00 0.00 0.00 3.77
557 558 2.290464 TGTTCGTGTTAGGGGTTGTTG 58.710 47.619 0.00 0.00 0.00 3.33
558 559 2.684374 GTTGTTCGTGTTAGGGGTTGTT 59.316 45.455 0.00 0.00 0.00 2.83
559 560 2.291365 GTTGTTCGTGTTAGGGGTTGT 58.709 47.619 0.00 0.00 0.00 3.32
560 561 1.262151 CGTTGTTCGTGTTAGGGGTTG 59.738 52.381 0.00 0.00 34.52 3.77
561 562 1.585297 CGTTGTTCGTGTTAGGGGTT 58.415 50.000 0.00 0.00 34.52 4.11
562 563 3.294079 CGTTGTTCGTGTTAGGGGT 57.706 52.632 0.00 0.00 34.52 4.95
572 573 2.182614 GATGGGGTGCACGTTGTTCG 62.183 60.000 11.45 0.00 46.00 3.95
573 574 0.889186 AGATGGGGTGCACGTTGTTC 60.889 55.000 11.45 4.16 0.00 3.18
574 575 0.889186 GAGATGGGGTGCACGTTGTT 60.889 55.000 11.45 0.00 0.00 2.83
575 576 1.302511 GAGATGGGGTGCACGTTGT 60.303 57.895 11.45 0.00 0.00 3.32
576 577 1.003355 AGAGATGGGGTGCACGTTG 60.003 57.895 11.45 0.00 0.00 4.10
577 578 1.194781 AGAGAGATGGGGTGCACGTT 61.195 55.000 11.45 0.00 0.00 3.99
578 579 1.194781 AAGAGAGATGGGGTGCACGT 61.195 55.000 11.45 0.00 0.00 4.49
579 580 0.742281 CAAGAGAGATGGGGTGCACG 60.742 60.000 11.45 0.00 0.00 5.34
580 581 0.326264 ACAAGAGAGATGGGGTGCAC 59.674 55.000 8.80 8.80 0.00 4.57
581 582 0.325933 CACAAGAGAGATGGGGTGCA 59.674 55.000 0.00 0.00 0.00 4.57
582 583 0.326264 ACACAAGAGAGATGGGGTGC 59.674 55.000 0.00 0.00 0.00 5.01
583 584 2.224621 ACAACACAAGAGAGATGGGGTG 60.225 50.000 0.00 0.00 44.57 4.61
584 585 2.057922 ACAACACAAGAGAGATGGGGT 58.942 47.619 0.00 0.00 0.00 4.95
585 586 2.867109 ACAACACAAGAGAGATGGGG 57.133 50.000 0.00 0.00 0.00 4.96
586 587 6.176183 AGATAAACAACACAAGAGAGATGGG 58.824 40.000 0.00 0.00 0.00 4.00
587 588 7.678947 AAGATAAACAACACAAGAGAGATGG 57.321 36.000 0.00 0.00 0.00 3.51
588 589 8.997323 AGAAAGATAAACAACACAAGAGAGATG 58.003 33.333 0.00 0.00 0.00 2.90
589 590 9.566432 AAGAAAGATAAACAACACAAGAGAGAT 57.434 29.630 0.00 0.00 0.00 2.75
590 591 8.964476 AAGAAAGATAAACAACACAAGAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
640 641 2.328856 CGGGTTGTGCGGTATTGCA 61.329 57.895 0.00 0.00 43.95 4.08
641 642 2.248274 GACGGGTTGTGCGGTATTGC 62.248 60.000 0.00 0.00 0.00 3.56
642 643 1.791662 GACGGGTTGTGCGGTATTG 59.208 57.895 0.00 0.00 0.00 1.90
643 644 1.738830 CGACGGGTTGTGCGGTATT 60.739 57.895 0.00 0.00 0.00 1.89
644 645 2.125832 CGACGGGTTGTGCGGTAT 60.126 61.111 0.00 0.00 0.00 2.73
649 650 3.799755 GATGGCGACGGGTTGTGC 61.800 66.667 0.00 0.00 0.00 4.57
650 651 2.358125 TGATGGCGACGGGTTGTG 60.358 61.111 0.00 0.00 0.00 3.33
651 652 2.047274 CTGATGGCGACGGGTTGT 60.047 61.111 0.00 0.00 0.00 3.32
652 653 2.100631 GTCTGATGGCGACGGGTTG 61.101 63.158 0.00 0.00 0.00 3.77
653 654 2.264794 GTCTGATGGCGACGGGTT 59.735 61.111 0.00 0.00 0.00 4.11
654 655 3.771160 GGTCTGATGGCGACGGGT 61.771 66.667 0.00 0.00 32.24 5.28
655 656 4.530857 GGGTCTGATGGCGACGGG 62.531 72.222 0.00 0.00 32.24 5.28
656 657 2.593468 AATGGGTCTGATGGCGACGG 62.593 60.000 0.00 0.00 32.24 4.79
657 658 0.744414 AAATGGGTCTGATGGCGACG 60.744 55.000 0.00 0.00 32.24 5.12
658 659 1.133025 CAAAATGGGTCTGATGGCGAC 59.867 52.381 0.00 0.00 0.00 5.19
659 660 1.462616 CAAAATGGGTCTGATGGCGA 58.537 50.000 0.00 0.00 0.00 5.54
660 661 0.457035 CCAAAATGGGTCTGATGGCG 59.543 55.000 0.00 0.00 32.67 5.69
661 662 1.205417 CACCAAAATGGGTCTGATGGC 59.795 52.381 0.87 0.00 43.37 4.40
662 663 2.231964 CACACCAAAATGGGTCTGATGG 59.768 50.000 0.87 0.00 43.37 3.51
663 664 2.353011 GCACACCAAAATGGGTCTGATG 60.353 50.000 0.87 0.00 43.37 3.07
664 665 1.895131 GCACACCAAAATGGGTCTGAT 59.105 47.619 0.87 0.00 43.37 2.90
665 666 1.133513 AGCACACCAAAATGGGTCTGA 60.134 47.619 0.87 0.00 43.37 3.27
666 667 1.270550 GAGCACACCAAAATGGGTCTG 59.729 52.381 0.87 0.00 43.37 3.51
667 668 1.620822 GAGCACACCAAAATGGGTCT 58.379 50.000 0.87 0.00 43.37 3.85
668 669 0.603065 GGAGCACACCAAAATGGGTC 59.397 55.000 0.87 0.00 43.37 4.46
669 670 1.178534 CGGAGCACACCAAAATGGGT 61.179 55.000 0.87 0.00 43.37 4.51
670 671 1.178534 ACGGAGCACACCAAAATGGG 61.179 55.000 0.87 0.00 43.37 4.00
671 672 0.673437 AACGGAGCACACCAAAATGG 59.327 50.000 0.00 0.00 45.02 3.16
672 673 2.095263 CCTAACGGAGCACACCAAAATG 60.095 50.000 0.00 0.00 0.00 2.32
673 674 2.159382 CCTAACGGAGCACACCAAAAT 58.841 47.619 0.00 0.00 0.00 1.82
674 675 1.600023 CCTAACGGAGCACACCAAAA 58.400 50.000 0.00 0.00 0.00 2.44
675 676 0.250553 CCCTAACGGAGCACACCAAA 60.251 55.000 0.00 0.00 0.00 3.28
676 677 1.373435 CCCTAACGGAGCACACCAA 59.627 57.895 0.00 0.00 0.00 3.67
677 678 3.065306 CCCTAACGGAGCACACCA 58.935 61.111 0.00 0.00 0.00 4.17
678 679 2.436115 GCCCTAACGGAGCACACC 60.436 66.667 0.00 0.00 0.00 4.16
679 680 2.345991 TGCCCTAACGGAGCACAC 59.654 61.111 0.00 0.00 33.41 3.82
682 683 0.248289 GTTAGTGCCCTAACGGAGCA 59.752 55.000 3.24 0.00 42.56 4.26
683 684 3.061093 GTTAGTGCCCTAACGGAGC 57.939 57.895 3.24 0.00 42.56 4.70
694 695 2.727916 GCGTGTTGGCATTAGTTAGTGC 60.728 50.000 0.00 0.00 38.09 4.40
695 696 2.159572 GGCGTGTTGGCATTAGTTAGTG 60.160 50.000 0.00 0.00 44.08 2.74
696 697 2.081462 GGCGTGTTGGCATTAGTTAGT 58.919 47.619 0.00 0.00 44.08 2.24
697 698 2.825086 GGCGTGTTGGCATTAGTTAG 57.175 50.000 0.00 0.00 44.08 2.34
706 707 0.885196 TAATCTTTGGGCGTGTTGGC 59.115 50.000 0.00 0.00 43.88 4.52
713 714 0.451783 GTGGCTGTAATCTTTGGGCG 59.548 55.000 0.00 0.00 0.00 6.13
726 727 5.458779 GCTTTGTTTAGTTTTAGTGTGGCTG 59.541 40.000 0.00 0.00 0.00 4.85
733 734 7.220108 CGCTTCTTTGCTTTGTTTAGTTTTAGT 59.780 33.333 0.00 0.00 0.00 2.24
734 735 7.431084 TCGCTTCTTTGCTTTGTTTAGTTTTAG 59.569 33.333 0.00 0.00 0.00 1.85
735 736 7.251994 TCGCTTCTTTGCTTTGTTTAGTTTTA 58.748 30.769 0.00 0.00 0.00 1.52
736 737 6.096695 TCGCTTCTTTGCTTTGTTTAGTTTT 58.903 32.000 0.00 0.00 0.00 2.43
737 738 5.646606 TCGCTTCTTTGCTTTGTTTAGTTT 58.353 33.333 0.00 0.00 0.00 2.66
738 739 5.243426 TCGCTTCTTTGCTTTGTTTAGTT 57.757 34.783 0.00 0.00 0.00 2.24
767 768 7.823745 AGAGAAGTGTGGTCAACATATTTTT 57.176 32.000 0.00 0.00 41.97 1.94
768 769 7.502226 TGAAGAGAAGTGTGGTCAACATATTTT 59.498 33.333 0.00 0.00 41.97 1.82
772 773 5.541845 CTGAAGAGAAGTGTGGTCAACATA 58.458 41.667 0.00 0.00 41.97 2.29
783 784 1.788258 TTCTGCGCTGAAGAGAAGTG 58.212 50.000 23.74 0.00 0.00 3.16
793 794 0.839477 CGTGTTTGTTTTCTGCGCTG 59.161 50.000 9.73 8.88 0.00 5.18
917 922 0.457851 ATTCTCGCTGTCTCCGGAAG 59.542 55.000 5.23 0.39 0.00 3.46
1048 1065 2.404995 CGCCTAACTCGGAGGTCGT 61.405 63.158 10.23 0.00 40.32 4.34
1258 1607 4.687215 TGCTGTCGGTGGAGCTGC 62.687 66.667 0.00 0.00 36.11 5.25
1259 1608 2.031012 TTGCTGTCGGTGGAGCTG 59.969 61.111 0.00 0.00 36.11 4.24
1563 1925 2.267188 AAGCACGCGACGACTATTTA 57.733 45.000 15.93 0.00 0.00 1.40
1591 1955 2.467305 CCAAGTCAAAACGCGAATTGTG 59.533 45.455 15.93 11.22 36.88 3.33
1594 1958 2.616842 AGACCAAGTCAAAACGCGAATT 59.383 40.909 15.93 4.26 34.60 2.17
1725 2099 5.468540 AGGAGCCACAAAAATTTAAGGTC 57.531 39.130 0.00 0.00 0.00 3.85
1794 2168 3.018598 ACAGTATACGCAGCTGCATAG 57.981 47.619 36.03 23.12 42.21 2.23
1795 2169 3.568430 AGTACAGTATACGCAGCTGCATA 59.432 43.478 36.03 27.82 42.21 3.14
1796 2170 2.362397 AGTACAGTATACGCAGCTGCAT 59.638 45.455 36.03 26.43 42.21 3.96
1797 2171 1.749063 AGTACAGTATACGCAGCTGCA 59.251 47.619 36.03 20.16 42.21 4.41
1798 2172 2.493713 AGTACAGTATACGCAGCTGC 57.506 50.000 29.12 29.12 33.87 5.25
1799 2173 3.547868 CACAAGTACAGTATACGCAGCTG 59.452 47.826 10.11 10.11 36.41 4.24
1800 2174 3.770666 CACAAGTACAGTATACGCAGCT 58.229 45.455 0.00 0.00 0.00 4.24
1801 2175 2.281762 GCACAAGTACAGTATACGCAGC 59.718 50.000 0.00 0.00 0.00 5.25
1802 2176 3.507786 TGCACAAGTACAGTATACGCAG 58.492 45.455 0.00 0.00 0.00 5.18
1803 2177 3.507786 CTGCACAAGTACAGTATACGCA 58.492 45.455 0.00 0.00 0.00 5.24
1804 2178 2.281762 GCTGCACAAGTACAGTATACGC 59.718 50.000 0.00 0.00 36.26 4.42
1928 2307 9.394767 ACAAACATGACAATGTATAAGCAGATA 57.605 29.630 0.00 0.00 46.58 1.98
1940 2319 3.569277 TGGACCAGACAAACATGACAATG 59.431 43.478 0.00 0.00 39.89 2.82
1942 2321 2.948979 GTGGACCAGACAAACATGACAA 59.051 45.455 0.00 0.00 0.00 3.18
1947 2326 3.214328 GAAGTGTGGACCAGACAAACAT 58.786 45.455 22.75 4.43 29.61 2.71
1952 2397 1.837439 AGTTGAAGTGTGGACCAGACA 59.163 47.619 22.75 2.43 29.61 3.41
1958 2403 4.994852 TGTGCTAATAGTTGAAGTGTGGAC 59.005 41.667 0.00 0.00 0.00 4.02
1974 2419 1.545136 CCACACCATGCATTGTGCTAA 59.455 47.619 26.18 0.00 45.31 3.09
1975 2420 1.175654 CCACACCATGCATTGTGCTA 58.824 50.000 26.18 0.00 45.31 3.49
1979 2430 1.927487 ACATCCACACCATGCATTGT 58.073 45.000 0.00 0.00 0.00 2.71
1983 2434 0.826672 TGCAACATCCACACCATGCA 60.827 50.000 0.00 0.00 41.08 3.96
1992 2443 5.936187 ACCATTTGAATATGCAACATCCA 57.064 34.783 0.00 0.00 0.00 3.41
2065 2516 7.280769 GCGGTGTATTTTCATTTGTTCTTTTC 58.719 34.615 0.00 0.00 0.00 2.29
2157 2608 0.609131 CGGAAGGAAAGTGGTGCCAT 60.609 55.000 0.00 0.00 0.00 4.40
2176 2627 5.457148 TGTCGATGTGTTGTTGTTTTATTGC 59.543 36.000 0.00 0.00 0.00 3.56
2177 2628 7.326645 GTTGTCGATGTGTTGTTGTTTTATTG 58.673 34.615 0.00 0.00 0.00 1.90
2334 2785 0.034089 AAGCAGCCCTGTAACCATCC 60.034 55.000 0.00 0.00 0.00 3.51
2534 2985 2.290896 TGGGTAATGGTGAGCAGAAAGG 60.291 50.000 0.00 0.00 0.00 3.11
2542 2993 6.595682 AGATACTGAAATGGGTAATGGTGAG 58.404 40.000 0.00 0.00 0.00 3.51
2548 2999 7.213178 ACCAGAAGATACTGAAATGGGTAAT 57.787 36.000 0.00 0.00 39.94 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.