Multiple sequence alignment - TraesCS6B01G292300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G292300 chr6B 100.000 7898 0 0 1 7898 526038981 526031084 0.000000e+00 14585.0
1 TraesCS6B01G292300 chr6B 96.412 864 26 4 7036 7898 525995965 525995106 0.000000e+00 1419.0
2 TraesCS6B01G292300 chr6B 90.845 142 11 2 7619 7759 249499333 249499193 1.050000e-43 189.0
3 TraesCS6B01G292300 chr6A 95.756 3252 105 11 1502 4739 490475639 490478871 0.000000e+00 5210.0
4 TraesCS6B01G292300 chr6A 95.731 1546 43 9 4821 6351 490478870 490480407 0.000000e+00 2468.0
5 TraesCS6B01G292300 chr6A 94.826 1411 48 12 9 1401 490474243 490475646 0.000000e+00 2178.0
6 TraesCS6B01G292300 chr6A 93.996 1066 49 9 6528 7588 490480796 490481851 0.000000e+00 1600.0
7 TraesCS6B01G292300 chr6A 94.286 140 6 2 6391 6529 490480407 490480545 6.210000e-51 213.0
8 TraesCS6B01G292300 chr6D 96.824 2739 77 5 1502 4232 352875591 352878327 0.000000e+00 4567.0
9 TraesCS6B01G292300 chr6D 95.541 1637 49 7 4821 6455 352879230 352880844 0.000000e+00 2597.0
10 TraesCS6B01G292300 chr6D 96.813 1412 29 8 1 1402 352874194 352875599 0.000000e+00 2344.0
11 TraesCS6B01G292300 chr6D 96.468 538 17 1 6567 7104 352880840 352881375 0.000000e+00 887.0
12 TraesCS6B01G292300 chr6D 93.147 394 19 2 4346 4739 352878846 352879231 8.890000e-159 571.0
13 TraesCS6B01G292300 chr6D 95.312 320 11 1 7173 7492 352881377 352881692 9.150000e-139 505.0
14 TraesCS6B01G292300 chr6D 86.420 243 27 3 7203 7445 291723289 291723525 2.190000e-65 261.0
15 TraesCS6B01G292300 chr6D 95.833 96 4 0 7802 7897 352881883 352881978 1.060000e-33 156.0
16 TraesCS6B01G292300 chr6D 94.681 94 4 1 7503 7596 352881793 352881885 2.300000e-30 145.0
17 TraesCS6B01G292300 chr6D 92.105 76 3 2 4231 4306 352878489 352878561 3.900000e-18 104.0
18 TraesCS6B01G292300 chr1A 86.385 213 27 2 7593 7804 537532108 537531897 1.710000e-56 231.0
19 TraesCS6B01G292300 chr1A 96.512 86 3 0 4738 4823 91047542 91047457 8.260000e-30 143.0
20 TraesCS6B01G292300 chr5B 85.577 208 26 3 7600 7804 281173949 281174155 1.730000e-51 215.0
21 TraesCS6B01G292300 chrUn 92.029 138 10 1 7625 7761 191163442 191163305 8.090000e-45 193.0
22 TraesCS6B01G292300 chr3B 92.029 138 10 1 7625 7761 778740089 778739952 8.090000e-45 193.0
23 TraesCS6B01G292300 chr7A 92.537 134 7 3 7633 7763 672155140 672155007 1.050000e-43 189.0
24 TraesCS6B01G292300 chr2B 90.780 141 10 3 7622 7760 529341893 529342032 1.350000e-42 185.0
25 TraesCS6B01G292300 chr2B 90.647 139 11 2 7622 7759 186880505 186880642 4.870000e-42 183.0
26 TraesCS6B01G292300 chr2B 94.340 53 3 0 6098 6150 656970100 656970048 1.830000e-11 82.4
27 TraesCS6B01G292300 chr5A 94.898 98 3 2 4735 4832 469056940 469057035 1.370000e-32 152.0
28 TraesCS6B01G292300 chr5A 89.062 64 4 3 6098 6159 106360345 106360283 8.500000e-10 76.8
29 TraesCS6B01G292300 chr7D 95.652 92 4 0 4731 4822 5068177 5068086 1.780000e-31 148.0
30 TraesCS6B01G292300 chr7D 95.652 92 4 0 4731 4822 22964348 22964257 1.780000e-31 148.0
31 TraesCS6B01G292300 chr7D 93.000 100 5 2 4725 4822 510397743 510397842 2.300000e-30 145.0
32 TraesCS6B01G292300 chr3D 96.667 90 2 1 4738 4827 602250729 602250817 1.780000e-31 148.0
33 TraesCS6B01G292300 chr3D 97.826 46 1 0 7591 7636 6467312 6467357 6.570000e-11 80.5
34 TraesCS6B01G292300 chr1B 97.674 86 2 0 4737 4822 456268084 456268169 1.780000e-31 148.0
35 TraesCS6B01G292300 chr1B 97.826 46 1 0 7591 7636 39812833 39812878 6.570000e-11 80.5
36 TraesCS6B01G292300 chr1B 90.323 62 4 2 6098 6157 211323008 211323069 6.570000e-11 80.5
37 TraesCS6B01G292300 chr2D 92.929 99 7 0 4728 4826 217050510 217050412 2.300000e-30 145.0
38 TraesCS6B01G292300 chr2D 92.727 55 4 0 6098 6152 291859286 291859340 6.570000e-11 80.5
39 TraesCS6B01G292300 chr2D 94.118 51 2 1 7586 7636 554130004 554130053 8.500000e-10 76.8
40 TraesCS6B01G292300 chr4A 83.893 149 17 6 4680 4824 684920340 684920485 1.380000e-27 135.0
41 TraesCS6B01G292300 chr4A 88.889 63 4 3 7574 7636 39520570 39520511 3.060000e-09 75.0
42 TraesCS6B01G292300 chr4B 96.078 51 2 0 6098 6148 564164149 564164099 5.080000e-12 84.2
43 TraesCS6B01G292300 chr7B 92.857 56 2 2 6098 6151 562335894 562335949 6.570000e-11 80.5
44 TraesCS6B01G292300 chr7B 87.879 66 3 1 7593 7653 525000540 525000475 1.100000e-08 73.1
45 TraesCS6B01G292300 chr7B 90.385 52 4 1 7594 7645 687672467 687672517 5.110000e-07 67.6
46 TraesCS6B01G292300 chr4D 94.340 53 2 1 7584 7636 99662398 99662449 6.570000e-11 80.5
47 TraesCS6B01G292300 chr3A 92.727 55 4 0 6098 6152 698350668 698350614 6.570000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G292300 chr6B 526031084 526038981 7897 True 14585.000000 14585 100.000000 1 7898 1 chr6B.!!$R3 7897
1 TraesCS6B01G292300 chr6B 525995106 525995965 859 True 1419.000000 1419 96.412000 7036 7898 1 chr6B.!!$R2 862
2 TraesCS6B01G292300 chr6A 490474243 490481851 7608 False 2333.800000 5210 94.919000 9 7588 5 chr6A.!!$F1 7579
3 TraesCS6B01G292300 chr6D 352874194 352881978 7784 False 1319.555556 4567 95.191556 1 7897 9 chr6D.!!$F2 7896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 956 0.042731 TTTGGGATCGGGAGAGGAGT 59.957 55.000 0.00 0.00 45.48 3.85 F
1329 1350 0.251341 TTCTTCCCAAGGCCAAGAGC 60.251 55.000 5.01 0.00 42.60 4.09 F
1408 1429 1.066787 TCATGGACGTTTGCATACGGA 60.067 47.619 28.81 15.72 45.44 4.69 F
1409 1430 1.939934 CATGGACGTTTGCATACGGAT 59.060 47.619 28.81 16.71 45.44 4.18 F
1411 1432 2.004017 TGGACGTTTGCATACGGATTC 58.996 47.619 28.81 18.77 45.44 2.52 F
1412 1433 2.004017 GGACGTTTGCATACGGATTCA 58.996 47.619 28.81 0.00 45.44 2.57 F
1413 1434 2.030457 GGACGTTTGCATACGGATTCAG 59.970 50.000 28.81 4.86 45.44 3.02 F
2220 2249 2.552315 TCTTTTGAATCAAGGCACGGAC 59.448 45.455 0.00 0.00 0.00 4.79 F
3678 3709 1.908619 TGTGATACACCTGCATCTGGT 59.091 47.619 0.00 0.00 36.11 4.00 F
4324 4519 0.771755 GAAGGGGGAGTTGGAAGTGT 59.228 55.000 0.00 0.00 0.00 3.55 F
5564 6015 0.807496 GCCAGATGGTGAACTGAAGC 59.193 55.000 0.00 0.00 36.38 3.86 F
6019 6470 0.529378 CCCTCACTTGCTTGCCATTC 59.471 55.000 0.00 0.00 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 1945 0.865111 TCACTTCGCCACATTTGTCG 59.135 50.000 0.00 0.0 0.00 4.35 R
2218 2247 2.143122 TCACAGGCATTTCGACTTGTC 58.857 47.619 0.00 0.0 0.00 3.18 R
2220 2249 3.837213 ATTCACAGGCATTTCGACTTG 57.163 42.857 0.00 0.0 0.00 3.16 R
2750 2779 4.021981 CCAGCATCGTCTACATCAATAGGA 60.022 45.833 0.00 0.0 0.00 2.94 R
3071 3100 8.752187 CAAAATGATGAGAAGATAAAAAGGGGA 58.248 33.333 0.00 0.0 0.00 4.81 R
3505 3536 6.092533 ACTTGATTGAGCTTGTTTTGGTTTTG 59.907 34.615 0.00 0.0 0.00 2.44 R
3599 3630 8.531982 CCCAAGTTAATCTTCCTCGATGATATA 58.468 37.037 0.00 0.0 33.63 0.86 R
4262 4457 0.608035 TCATGTCGTTTGGCCTTCCC 60.608 55.000 3.32 0.0 0.00 3.97 R
4810 5260 0.033405 TAGCAAGCTACTCCCTCCGT 60.033 55.000 0.00 0.0 0.00 4.69 R
5997 6448 0.991146 TGGCAAGCAAGTGAGGGATA 59.009 50.000 0.00 0.0 0.00 2.59 R
6562 7280 0.981183 TGCGTTAAGATGGAGGGTGT 59.019 50.000 0.00 0.0 0.00 4.16 R
7222 7940 1.077501 GCAGGCCATGGCTTCAGTA 60.078 57.895 34.70 0.0 41.60 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 5.337894 CCATTGTCTGACATGTCTCTTACCT 60.338 44.000 25.55 3.79 0.00 3.08
332 345 5.290386 GGAGAAAAGACAAGACGAAGAGAA 58.710 41.667 0.00 0.00 0.00 2.87
335 348 2.708386 AGACAAGACGAAGAGAACCG 57.292 50.000 0.00 0.00 0.00 4.44
756 777 0.188342 ATTGGCACCTGGAAAGTGGT 59.812 50.000 0.00 0.00 35.71 4.16
868 889 1.077005 TCTTGGGATTGGTTCTTGGGG 59.923 52.381 0.00 0.00 0.00 4.96
935 956 0.042731 TTTGGGATCGGGAGAGGAGT 59.957 55.000 0.00 0.00 45.48 3.85
957 978 1.677633 CCATTTCCGGGCGGTTCTT 60.678 57.895 0.00 0.00 36.47 2.52
1029 1050 3.188786 GTGCGTGTGATCGGAGCC 61.189 66.667 0.00 0.00 0.00 4.70
1321 1342 1.340114 GGTACCAGCTTCTTCCCAAGG 60.340 57.143 7.15 0.00 0.00 3.61
1329 1350 0.251341 TTCTTCCCAAGGCCAAGAGC 60.251 55.000 5.01 0.00 42.60 4.09
1364 1385 7.920682 AGTTGATTGTGGTAATTGTTTCAACTC 59.079 33.333 8.68 3.91 45.20 3.01
1365 1386 7.581213 TGATTGTGGTAATTGTTTCAACTCT 57.419 32.000 0.00 0.00 0.00 3.24
1381 1402 9.871299 GTTTCAACTCTCAATTTTTCTCTAGTC 57.129 33.333 0.00 0.00 0.00 2.59
1382 1403 9.613428 TTTCAACTCTCAATTTTTCTCTAGTCA 57.387 29.630 0.00 0.00 0.00 3.41
1383 1404 9.784531 TTCAACTCTCAATTTTTCTCTAGTCAT 57.215 29.630 0.00 0.00 0.00 3.06
1387 1408 9.225436 ACTCTCAATTTTTCTCTAGTCATTTCC 57.775 33.333 0.00 0.00 0.00 3.13
1388 1409 9.447157 CTCTCAATTTTTCTCTAGTCATTTCCT 57.553 33.333 0.00 0.00 0.00 3.36
1389 1410 9.442047 TCTCAATTTTTCTCTAGTCATTTCCTC 57.558 33.333 0.00 0.00 0.00 3.71
1390 1411 9.224267 CTCAATTTTTCTCTAGTCATTTCCTCA 57.776 33.333 0.00 0.00 0.00 3.86
1391 1412 9.745018 TCAATTTTTCTCTAGTCATTTCCTCAT 57.255 29.630 0.00 0.00 0.00 2.90
1392 1413 9.784680 CAATTTTTCTCTAGTCATTTCCTCATG 57.215 33.333 0.00 0.00 0.00 3.07
1393 1414 7.928307 TTTTTCTCTAGTCATTTCCTCATGG 57.072 36.000 0.00 0.00 0.00 3.66
1394 1415 6.874278 TTTCTCTAGTCATTTCCTCATGGA 57.126 37.500 0.00 0.00 41.36 3.41
1395 1416 5.860941 TCTCTAGTCATTTCCTCATGGAC 57.139 43.478 0.00 0.00 43.06 4.02
1396 1417 4.339530 TCTCTAGTCATTTCCTCATGGACG 59.660 45.833 0.00 0.00 43.06 4.79
1397 1418 4.023980 TCTAGTCATTTCCTCATGGACGT 58.976 43.478 0.00 0.00 43.06 4.34
1398 1419 3.703001 AGTCATTTCCTCATGGACGTT 57.297 42.857 0.00 0.00 43.06 3.99
1399 1420 4.021102 AGTCATTTCCTCATGGACGTTT 57.979 40.909 0.00 0.00 43.06 3.60
1400 1421 3.753272 AGTCATTTCCTCATGGACGTTTG 59.247 43.478 0.00 0.00 43.06 2.93
1401 1422 2.487762 TCATTTCCTCATGGACGTTTGC 59.512 45.455 0.00 0.00 43.06 3.68
1402 1423 1.974265 TTTCCTCATGGACGTTTGCA 58.026 45.000 0.00 0.00 43.06 4.08
1403 1424 2.198827 TTCCTCATGGACGTTTGCAT 57.801 45.000 0.00 0.00 43.06 3.96
1404 1425 3.342377 TTCCTCATGGACGTTTGCATA 57.658 42.857 0.00 0.00 43.06 3.14
1405 1426 2.627945 TCCTCATGGACGTTTGCATAC 58.372 47.619 0.00 0.00 37.46 2.39
1406 1427 1.327460 CCTCATGGACGTTTGCATACG 59.673 52.381 25.05 25.05 46.52 3.06
1407 1428 1.327460 CTCATGGACGTTTGCATACGG 59.673 52.381 28.81 13.88 45.44 4.02
1408 1429 1.066787 TCATGGACGTTTGCATACGGA 60.067 47.619 28.81 15.72 45.44 4.69
1409 1430 1.939934 CATGGACGTTTGCATACGGAT 59.060 47.619 28.81 16.71 45.44 4.18
1410 1431 2.102070 TGGACGTTTGCATACGGATT 57.898 45.000 28.81 12.08 45.44 3.01
1411 1432 2.004017 TGGACGTTTGCATACGGATTC 58.996 47.619 28.81 18.77 45.44 2.52
1412 1433 2.004017 GGACGTTTGCATACGGATTCA 58.996 47.619 28.81 0.00 45.44 2.57
1413 1434 2.030457 GGACGTTTGCATACGGATTCAG 59.970 50.000 28.81 4.86 45.44 3.02
1414 1435 2.671396 GACGTTTGCATACGGATTCAGT 59.329 45.455 28.81 10.04 45.44 3.41
1415 1436 3.852286 ACGTTTGCATACGGATTCAGTA 58.148 40.909 28.81 0.00 45.44 2.74
1416 1437 4.439057 ACGTTTGCATACGGATTCAGTAT 58.561 39.130 28.81 6.29 45.44 2.12
1417 1438 4.873827 ACGTTTGCATACGGATTCAGTATT 59.126 37.500 28.81 5.61 45.44 1.89
1418 1439 5.353123 ACGTTTGCATACGGATTCAGTATTT 59.647 36.000 28.81 5.14 45.44 1.40
1419 1440 5.676744 CGTTTGCATACGGATTCAGTATTTG 59.323 40.000 20.20 1.03 37.86 2.32
1420 1441 6.456315 CGTTTGCATACGGATTCAGTATTTGA 60.456 38.462 20.20 0.00 37.86 2.69
1421 1442 5.984233 TGCATACGGATTCAGTATTTGAC 57.016 39.130 6.71 0.00 34.94 3.18
1422 1443 5.670485 TGCATACGGATTCAGTATTTGACT 58.330 37.500 6.71 0.00 39.82 3.41
1423 1444 6.112734 TGCATACGGATTCAGTATTTGACTT 58.887 36.000 6.71 0.00 35.64 3.01
1424 1445 6.597672 TGCATACGGATTCAGTATTTGACTTT 59.402 34.615 6.71 0.00 35.64 2.66
1425 1446 6.907212 GCATACGGATTCAGTATTTGACTTTG 59.093 38.462 6.71 0.00 35.64 2.77
1426 1447 5.880054 ACGGATTCAGTATTTGACTTTGG 57.120 39.130 0.00 0.00 35.64 3.28
1427 1448 5.313712 ACGGATTCAGTATTTGACTTTGGT 58.686 37.500 0.00 0.00 35.64 3.67
1428 1449 6.469410 ACGGATTCAGTATTTGACTTTGGTA 58.531 36.000 0.00 0.00 35.64 3.25
1429 1450 7.110155 ACGGATTCAGTATTTGACTTTGGTAT 58.890 34.615 0.00 0.00 35.64 2.73
1430 1451 7.610305 ACGGATTCAGTATTTGACTTTGGTATT 59.390 33.333 0.00 0.00 35.64 1.89
1431 1452 8.122952 CGGATTCAGTATTTGACTTTGGTATTC 58.877 37.037 0.00 0.00 35.64 1.75
1432 1453 8.956426 GGATTCAGTATTTGACTTTGGTATTCA 58.044 33.333 0.00 0.00 35.64 2.57
1435 1456 9.739276 TTCAGTATTTGACTTTGGTATTCATCT 57.261 29.630 0.00 0.00 35.64 2.90
1463 1484 9.755804 TCTGATGCTAACTGTAAGATATTGAAG 57.244 33.333 0.00 0.00 37.43 3.02
1464 1485 8.893219 TGATGCTAACTGTAAGATATTGAAGG 57.107 34.615 0.00 0.00 37.43 3.46
1465 1486 7.933577 TGATGCTAACTGTAAGATATTGAAGGG 59.066 37.037 0.00 0.00 37.43 3.95
1466 1487 6.591935 TGCTAACTGTAAGATATTGAAGGGG 58.408 40.000 0.00 0.00 37.43 4.79
1467 1488 6.385759 TGCTAACTGTAAGATATTGAAGGGGA 59.614 38.462 0.00 0.00 37.43 4.81
1468 1489 7.072454 TGCTAACTGTAAGATATTGAAGGGGAT 59.928 37.037 0.00 0.00 37.43 3.85
1469 1490 7.389053 GCTAACTGTAAGATATTGAAGGGGATG 59.611 40.741 0.00 0.00 37.43 3.51
1470 1491 6.831664 ACTGTAAGATATTGAAGGGGATGT 57.168 37.500 0.00 0.00 37.43 3.06
1471 1492 7.931015 ACTGTAAGATATTGAAGGGGATGTA 57.069 36.000 0.00 0.00 37.43 2.29
1472 1493 8.511748 ACTGTAAGATATTGAAGGGGATGTAT 57.488 34.615 0.00 0.00 37.43 2.29
1473 1494 8.949421 ACTGTAAGATATTGAAGGGGATGTATT 58.051 33.333 0.00 0.00 37.43 1.89
1474 1495 9.442047 CTGTAAGATATTGAAGGGGATGTATTC 57.558 37.037 0.00 0.00 34.07 1.75
1475 1496 9.170890 TGTAAGATATTGAAGGGGATGTATTCT 57.829 33.333 0.00 0.00 0.00 2.40
1478 1499 8.980832 AGATATTGAAGGGGATGTATTCTACT 57.019 34.615 0.00 0.00 0.00 2.57
1479 1500 9.398921 AGATATTGAAGGGGATGTATTCTACTT 57.601 33.333 0.00 0.00 0.00 2.24
1482 1503 7.743116 TTGAAGGGGATGTATTCTACTTACA 57.257 36.000 0.00 0.00 34.29 2.41
1483 1504 7.120923 TGAAGGGGATGTATTCTACTTACAC 57.879 40.000 0.00 0.00 32.70 2.90
1484 1505 6.901300 TGAAGGGGATGTATTCTACTTACACT 59.099 38.462 0.00 0.00 32.23 3.55
1485 1506 6.732896 AGGGGATGTATTCTACTTACACTG 57.267 41.667 0.00 0.00 29.95 3.66
1486 1507 5.070580 AGGGGATGTATTCTACTTACACTGC 59.929 44.000 0.00 0.00 29.95 4.40
1487 1508 4.982916 GGGATGTATTCTACTTACACTGCG 59.017 45.833 0.00 0.00 32.70 5.18
1488 1509 5.221185 GGGATGTATTCTACTTACACTGCGA 60.221 44.000 0.00 0.00 32.70 5.10
1489 1510 6.270815 GGATGTATTCTACTTACACTGCGAA 58.729 40.000 0.00 0.00 32.70 4.70
1490 1511 6.755141 GGATGTATTCTACTTACACTGCGAAA 59.245 38.462 0.00 0.00 32.70 3.46
1491 1512 7.438459 GGATGTATTCTACTTACACTGCGAAAT 59.562 37.037 0.00 0.00 32.70 2.17
1492 1513 9.459640 GATGTATTCTACTTACACTGCGAAATA 57.540 33.333 0.00 0.00 32.70 1.40
1493 1514 9.982651 ATGTATTCTACTTACACTGCGAAATAT 57.017 29.630 0.00 0.00 32.70 1.28
1494 1515 9.459640 TGTATTCTACTTACACTGCGAAATATC 57.540 33.333 0.00 0.00 0.00 1.63
1495 1516 9.680315 GTATTCTACTTACACTGCGAAATATCT 57.320 33.333 0.00 0.00 0.00 1.98
1496 1517 8.804688 ATTCTACTTACACTGCGAAATATCTC 57.195 34.615 0.00 0.00 0.00 2.75
1497 1518 7.569639 TCTACTTACACTGCGAAATATCTCT 57.430 36.000 0.00 0.00 0.00 3.10
1498 1519 8.672823 TCTACTTACACTGCGAAATATCTCTA 57.327 34.615 0.00 0.00 0.00 2.43
1499 1520 8.775527 TCTACTTACACTGCGAAATATCTCTAG 58.224 37.037 0.00 0.00 0.00 2.43
1500 1521 7.336161 ACTTACACTGCGAAATATCTCTAGT 57.664 36.000 0.00 0.00 0.00 2.57
1567 1588 8.970020 TGCATATGGATTCAGTATTTGACTTTT 58.030 29.630 4.56 0.00 35.64 2.27
1612 1633 8.180267 TCGTTTATCTACTGCTAACTGTAAGAC 58.820 37.037 0.00 0.00 37.43 3.01
1922 1945 4.021102 TGGAACTGAAATCCCTGAAGAC 57.979 45.455 0.00 0.00 36.04 3.01
1981 2010 8.887717 CAGGTTGATTCCTACTGAAATTTCTAG 58.112 37.037 18.64 15.39 36.33 2.43
1990 2019 4.003648 ACTGAAATTTCTAGTGAAGCCGG 58.996 43.478 18.64 0.00 33.28 6.13
2149 2178 5.591877 CAGCAGTATTTGAGGCTCCTTTAAT 59.408 40.000 12.86 8.89 33.60 1.40
2155 2184 5.722021 TTTGAGGCTCCTTTAATCCAAAC 57.278 39.130 12.86 0.00 0.00 2.93
2196 2225 8.218338 AGAGATTACATTTGCTGAACTATTGG 57.782 34.615 0.00 0.00 0.00 3.16
2218 2247 3.428045 GGATCTTTTGAATCAAGGCACGG 60.428 47.826 0.00 0.00 0.00 4.94
2220 2249 2.552315 TCTTTTGAATCAAGGCACGGAC 59.448 45.455 0.00 0.00 0.00 4.79
2369 2398 5.008217 TCAGGGTTGTACTGATTTCAAAACG 59.992 40.000 0.00 0.00 39.87 3.60
2511 2540 6.183360 GGCTGATGGAAAAGAGTATTCAGTTC 60.183 42.308 0.00 0.00 0.00 3.01
2732 2761 9.770503 CAAAATTATTCACAGTTCTCTGATCTG 57.229 33.333 2.17 0.00 43.76 2.90
2750 2779 5.617528 ATCTGCTGTCAGAGAAGATCAAT 57.382 39.130 3.32 0.00 42.99 2.57
3067 3096 5.197451 TCAGGCAAGAGAACAAAAAGGTAA 58.803 37.500 0.00 0.00 0.00 2.85
3071 3100 7.495606 CAGGCAAGAGAACAAAAAGGTAATTTT 59.504 33.333 0.00 0.00 43.04 1.82
3075 3104 7.062749 AGAGAACAAAAAGGTAATTTTCCCC 57.937 36.000 0.00 0.00 40.27 4.81
3145 3174 7.176690 TGAACCTCTTTGGAAATACAAGATTCC 59.823 37.037 0.00 0.00 44.38 3.01
3268 3299 9.003658 GGAACTTCTGACATTATTTTCTCAAGA 57.996 33.333 0.00 0.00 0.00 3.02
3505 3536 4.448537 TGTGGTATTTACTTGCAATGGC 57.551 40.909 0.00 0.00 41.68 4.40
3573 3604 3.135994 GGAACGGTATGTGTTCTGTTGT 58.864 45.455 5.90 0.00 44.02 3.32
3599 3630 8.171164 AGAGTTTCTGATTTTTCTTCCGAAAT 57.829 30.769 0.00 0.00 38.81 2.17
3678 3709 1.908619 TGTGATACACCTGCATCTGGT 59.091 47.619 0.00 0.00 36.11 4.00
3689 3720 6.823689 ACACCTGCATCTGGTAACTAAATAAG 59.176 38.462 0.00 0.00 33.97 1.73
3760 3791 4.813161 CCTCCATCAGTGATGAATGTACAC 59.187 45.833 30.63 0.00 42.09 2.90
3850 3881 4.750021 ATCAAATCTGTCAGAGCTAGCA 57.250 40.909 18.83 0.00 0.00 3.49
4050 4082 9.762381 ATACTGTTAATTTGTGATTTTCCCCTA 57.238 29.630 0.00 0.00 0.00 3.53
4068 4100 4.290942 CCCTAGTCTGATCTGGGTTACTT 58.709 47.826 0.00 0.00 34.83 2.24
4262 4457 9.352191 ACAACCAGTAGATTACTATAGTGTAGG 57.648 37.037 15.90 8.14 37.23 3.18
4276 4471 1.128809 TGTAGGGGAAGGCCAAACGA 61.129 55.000 5.01 0.00 35.15 3.85
4310 4505 2.039746 GGAAATTGGGGTTTTGGAAGGG 59.960 50.000 0.00 0.00 0.00 3.95
4324 4519 0.771755 GAAGGGGGAGTTGGAAGTGT 59.228 55.000 0.00 0.00 0.00 3.55
4331 4526 4.514401 GGGGAGTTGGAAGTGTAACATAG 58.486 47.826 0.00 0.00 41.43 2.23
4337 4533 6.644347 AGTTGGAAGTGTAACATAGATGAGG 58.356 40.000 0.00 0.00 41.43 3.86
4364 4804 9.917887 ATCATGGGGAGATTATATTGATTCTTC 57.082 33.333 0.00 0.00 0.00 2.87
4401 4841 6.631016 CACAACGTATATATAGGCCTGACAT 58.369 40.000 17.99 8.18 0.00 3.06
4408 4848 7.282450 CGTATATATAGGCCTGACATGACTGTA 59.718 40.741 17.99 0.00 35.14 2.74
4414 4854 2.479730 GCCTGACATGACTGTACCGTAG 60.480 54.545 0.00 0.00 35.14 3.51
4415 4855 2.099263 CCTGACATGACTGTACCGTAGG 59.901 54.545 0.00 0.00 46.38 3.18
4416 4856 2.097036 TGACATGACTGTACCGTAGGG 58.903 52.381 0.00 0.00 45.49 3.53
4417 4857 1.202382 GACATGACTGTACCGTAGGGC 60.202 57.143 0.00 0.00 45.49 5.19
4418 4858 4.418312 GACATGACTGTACCGTAGGGCC 62.418 59.091 0.00 0.00 45.49 5.80
4463 4911 4.037222 TCATATCTTACCCAGGAAGCACA 58.963 43.478 0.00 0.00 0.00 4.57
4532 4980 8.800370 TTATTCAGTTACTGTCATAAATGCCA 57.200 30.769 12.41 0.00 31.71 4.92
4536 4984 7.761409 TCAGTTACTGTCATAAATGCCATTTC 58.239 34.615 12.41 0.00 31.71 2.17
4541 4989 9.941325 TTACTGTCATAAATGCCATTTCAAAAT 57.059 25.926 5.82 0.00 33.82 1.82
4579 5029 1.802960 GCTGGCCTGATATGTGATTCG 59.197 52.381 14.77 0.00 0.00 3.34
4588 5038 5.449041 CCTGATATGTGATTCGTTGGTTTGG 60.449 44.000 0.00 0.00 0.00 3.28
4724 5174 6.474819 TGTGTGATTTCAAATAGTACACGG 57.525 37.500 14.90 0.00 39.66 4.94
4742 5192 9.924650 AGTACACGGATATCAAATAAATACTCC 57.075 33.333 4.83 0.00 0.00 3.85
4743 5193 9.148104 GTACACGGATATCAAATAAATACTCCC 57.852 37.037 4.83 0.00 0.00 4.30
4744 5194 7.974504 ACACGGATATCAAATAAATACTCCCT 58.025 34.615 4.83 0.00 0.00 4.20
4745 5195 8.095169 ACACGGATATCAAATAAATACTCCCTC 58.905 37.037 4.83 0.00 0.00 4.30
4746 5196 7.549488 CACGGATATCAAATAAATACTCCCTCC 59.451 40.741 4.83 0.00 0.00 4.30
4747 5197 6.757010 CGGATATCAAATAAATACTCCCTCCG 59.243 42.308 4.83 0.00 34.26 4.63
4748 5198 7.578955 CGGATATCAAATAAATACTCCCTCCGT 60.579 40.741 4.83 0.00 35.81 4.69
4749 5199 7.764901 GGATATCAAATAAATACTCCCTCCGTC 59.235 40.741 4.83 0.00 0.00 4.79
4750 5200 5.286267 TCAAATAAATACTCCCTCCGTCC 57.714 43.478 0.00 0.00 0.00 4.79
4751 5201 4.102054 TCAAATAAATACTCCCTCCGTCCC 59.898 45.833 0.00 0.00 0.00 4.46
4752 5202 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
4753 5203 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
4754 5204 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
4755 5205 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4756 5206 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4757 5207 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
4758 5208 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4759 5209 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4760 5210 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4761 5211 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4762 5212 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4763 5213 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4764 5214 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4765 5215 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4766 5216 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4767 5217 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4768 5218 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4769 5219 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4770 5220 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4771 5221 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4772 5222 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4773 5223 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4774 5224 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4775 5225 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4776 5226 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4779 5229 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4780 5230 8.718102 ATATAAGAGCGTTTTTGACACTACAT 57.282 30.769 0.00 0.00 0.00 2.29
4781 5231 5.751243 AAGAGCGTTTTTGACACTACATT 57.249 34.783 0.00 0.00 0.00 2.71
4782 5232 6.854496 AAGAGCGTTTTTGACACTACATTA 57.146 33.333 0.00 0.00 0.00 1.90
4783 5233 6.467723 AGAGCGTTTTTGACACTACATTAG 57.532 37.500 0.00 0.00 0.00 1.73
4784 5234 5.989777 AGAGCGTTTTTGACACTACATTAGT 59.010 36.000 0.00 0.00 40.28 2.24
5077 5527 5.196695 AGAGTGGAAAGCTGAAGTTTTCTT 58.803 37.500 16.13 5.88 42.45 2.52
5166 5616 2.271944 AGCTCCACTAACACCAAACC 57.728 50.000 0.00 0.00 0.00 3.27
5197 5647 3.788672 GCCTATAGCAACTGCCAGT 57.211 52.632 0.00 0.00 43.38 4.00
5200 5650 2.831333 CCTATAGCAACTGCCAGTCTG 58.169 52.381 0.00 0.19 43.38 3.51
5530 5981 3.141398 TGCAACTCTTGGAACTGCTTAG 58.859 45.455 0.00 0.00 34.10 2.18
5555 6006 3.689161 TGAACTTTAATCGCCAGATGGTG 59.311 43.478 6.06 6.06 46.72 4.17
5564 6015 0.807496 GCCAGATGGTGAACTGAAGC 59.193 55.000 0.00 0.00 36.38 3.86
5569 6020 4.885907 CCAGATGGTGAACTGAAGCATATT 59.114 41.667 0.00 0.00 35.96 1.28
5690 6141 5.831103 ACACAATGGGAATCAGATAAACCT 58.169 37.500 0.00 0.00 0.00 3.50
5942 6393 5.989777 GTGAGCCAGTTTGACTTTAGAGTAA 59.010 40.000 0.00 0.00 35.88 2.24
5943 6394 5.989777 TGAGCCAGTTTGACTTTAGAGTAAC 59.010 40.000 0.00 0.00 35.88 2.50
5944 6395 5.925509 AGCCAGTTTGACTTTAGAGTAACA 58.074 37.500 2.86 0.00 35.88 2.41
5946 6397 5.049612 GCCAGTTTGACTTTAGAGTAACACC 60.050 44.000 2.86 0.00 35.88 4.16
5947 6398 6.289064 CCAGTTTGACTTTAGAGTAACACCT 58.711 40.000 2.86 0.00 35.88 4.00
5948 6399 7.439381 CCAGTTTGACTTTAGAGTAACACCTA 58.561 38.462 2.86 0.00 35.88 3.08
5997 6448 5.536161 ACATCTGCCATTGAAAACTAGTTGT 59.464 36.000 9.34 2.64 0.00 3.32
6019 6470 0.529378 CCCTCACTTGCTTGCCATTC 59.471 55.000 0.00 0.00 0.00 2.67
6093 6555 5.935945 TCACTAGTTTGTTGAAATCCCTGA 58.064 37.500 0.00 0.00 0.00 3.86
6231 6696 2.574006 AAATCTGCTCTGCTGGTTCA 57.426 45.000 0.00 0.00 29.91 3.18
6260 6725 3.340814 AACGGCTTCAGTGAATGATCT 57.659 42.857 5.91 0.00 37.89 2.75
6263 6728 5.028549 ACGGCTTCAGTGAATGATCTAAT 57.971 39.130 5.91 0.00 37.89 1.73
6327 6792 3.499537 AGGTATATGTGACATGCATTGCG 59.500 43.478 8.61 0.00 0.00 4.85
6334 6799 4.554292 TGTGACATGCATTGCGTAATTTT 58.446 34.783 2.41 0.00 0.00 1.82
6336 6801 3.367327 TGACATGCATTGCGTAATTTTGC 59.633 39.130 2.41 0.00 0.00 3.68
6370 6835 5.912149 ATTCTGGGGTTTATATGCAGAGA 57.088 39.130 0.00 0.00 0.00 3.10
6418 6883 5.147032 TGTCCTTTTGTCCATTTTCCTGAT 58.853 37.500 0.00 0.00 0.00 2.90
6456 6921 1.405463 CACGACATCTCTTCCATCCGA 59.595 52.381 0.00 0.00 0.00 4.55
6470 6935 5.165961 TCCATCCGAAGAAGAGAATTTGT 57.834 39.130 0.00 0.00 0.00 2.83
6473 6938 5.525378 CCATCCGAAGAAGAGAATTTGTAGG 59.475 44.000 0.00 0.00 0.00 3.18
6553 7271 1.740025 CCTTTGTCATCCTTCTTCCGC 59.260 52.381 0.00 0.00 0.00 5.54
6562 7280 0.667993 CCTTCTTCCGCTGCAACAAA 59.332 50.000 0.00 0.00 0.00 2.83
6630 7348 6.101332 TGCATATTTCAAAGGAATCAGTTGC 58.899 36.000 0.00 0.00 31.93 4.17
6631 7349 6.101332 GCATATTTCAAAGGAATCAGTTGCA 58.899 36.000 0.00 0.00 31.93 4.08
6813 7531 4.288105 ACCACCAGACATCAGAAGAGAATT 59.712 41.667 0.00 0.00 0.00 2.17
6939 7657 4.828939 ACCCATGTGCATAATACTGAATGG 59.171 41.667 0.00 0.00 34.40 3.16
6997 7715 6.658816 TGTACATACATTGCTTGATTGAAGGT 59.341 34.615 0.00 0.00 31.56 3.50
6999 7717 7.088589 ACATACATTGCTTGATTGAAGGTAC 57.911 36.000 0.00 0.00 31.56 3.34
7000 7718 4.685169 ACATTGCTTGATTGAAGGTACG 57.315 40.909 0.00 0.00 31.56 3.67
7104 7822 3.442977 GCAGCATTTTCTGAACTCAGGAT 59.557 43.478 6.87 0.00 43.91 3.24
7184 7902 2.229784 GACTGCAGAAATTTGGACCAGG 59.770 50.000 23.35 0.00 0.00 4.45
7222 7940 9.578576 AGCATCATACAACCAGTTATGATTTAT 57.421 29.630 6.19 0.00 37.51 1.40
7369 8089 4.996758 CACACACATGTTGATACAGAAGGA 59.003 41.667 12.90 0.00 36.72 3.36
7370 8090 5.469760 CACACACATGTTGATACAGAAGGAA 59.530 40.000 12.90 0.00 36.72 3.36
7371 8091 6.017192 CACACACATGTTGATACAGAAGGAAA 60.017 38.462 12.90 0.00 36.72 3.13
7372 8092 6.545666 ACACACATGTTGATACAGAAGGAAAA 59.454 34.615 12.90 0.00 37.77 2.29
7640 8458 5.532032 AGAGCGTTTAGATAACTACTCCCTC 59.468 44.000 0.00 0.00 0.00 4.30
7644 8462 6.405619 GCGTTTAGATAACTACTCCCTCTGTT 60.406 42.308 0.00 0.00 0.00 3.16
7656 8474 5.238583 ACTCCCTCTGTTCGAAAATACTTG 58.761 41.667 0.00 0.00 0.00 3.16
7767 8586 5.067023 CGGACGGAGGAAGTACTTTAGTAAT 59.933 44.000 10.02 0.00 31.52 1.89
7850 8669 1.843851 ACAAGTTCAACTGGGTCCTCA 59.156 47.619 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.614057 GACTGGTTTTCACTGTCAGTGG 59.386 50.000 28.47 15.25 45.94 4.00
10 11 7.011950 TGTTATGTTGTAGACTGGTTTTCACTG 59.988 37.037 0.00 0.00 0.00 3.66
11 12 7.051623 TGTTATGTTGTAGACTGGTTTTCACT 58.948 34.615 0.00 0.00 0.00 3.41
13 14 7.771361 TCTTGTTATGTTGTAGACTGGTTTTCA 59.229 33.333 0.00 0.00 0.00 2.69
14 15 8.149973 TCTTGTTATGTTGTAGACTGGTTTTC 57.850 34.615 0.00 0.00 0.00 2.29
17 18 6.231211 CCTCTTGTTATGTTGTAGACTGGTT 58.769 40.000 0.00 0.00 0.00 3.67
18 19 5.280011 CCCTCTTGTTATGTTGTAGACTGGT 60.280 44.000 0.00 0.00 0.00 4.00
19 20 5.178797 CCCTCTTGTTATGTTGTAGACTGG 58.821 45.833 0.00 0.00 0.00 4.00
112 113 2.615240 CGGGTGGTCATGATTGAGTTGA 60.615 50.000 0.00 0.00 30.85 3.18
166 167 6.309712 GCTGCAGCTATCTTGATTGAATAA 57.690 37.500 31.33 0.00 38.21 1.40
756 777 0.969149 AAGACTGACAGGCACATCGA 59.031 50.000 11.83 0.00 0.00 3.59
815 836 5.620879 GCAAATCAAACTCCCATCACTTCTC 60.621 44.000 0.00 0.00 0.00 2.87
1146 1167 0.734253 CGACGAAGCTGAACTCCTGG 60.734 60.000 0.00 0.00 0.00 4.45
1321 1342 2.669569 TGCCTTGTCGCTCTTGGC 60.670 61.111 0.00 0.00 43.49 4.52
1329 1350 1.069022 CCACAATCAACTGCCTTGTCG 60.069 52.381 0.00 0.00 30.99 4.35
1364 1385 9.224267 TGAGGAAATGACTAGAGAAAAATTGAG 57.776 33.333 0.00 0.00 0.00 3.02
1365 1386 9.745018 ATGAGGAAATGACTAGAGAAAAATTGA 57.255 29.630 0.00 0.00 0.00 2.57
1385 1406 2.627945 GTATGCAAACGTCCATGAGGA 58.372 47.619 0.00 0.00 43.21 3.71
1386 1407 1.327460 CGTATGCAAACGTCCATGAGG 59.673 52.381 0.00 0.00 38.07 3.86
1387 1408 1.327460 CCGTATGCAAACGTCCATGAG 59.673 52.381 0.00 0.00 41.27 2.90
1388 1409 1.066787 TCCGTATGCAAACGTCCATGA 60.067 47.619 0.00 0.00 41.27 3.07
1389 1410 1.364721 TCCGTATGCAAACGTCCATG 58.635 50.000 0.00 0.00 41.27 3.66
1390 1411 2.325583 ATCCGTATGCAAACGTCCAT 57.674 45.000 0.00 0.00 41.27 3.41
1391 1412 2.004017 GAATCCGTATGCAAACGTCCA 58.996 47.619 0.00 0.00 41.27 4.02
1392 1413 2.004017 TGAATCCGTATGCAAACGTCC 58.996 47.619 0.00 0.00 41.27 4.79
1393 1414 2.671396 ACTGAATCCGTATGCAAACGTC 59.329 45.455 0.00 0.00 41.27 4.34
1394 1415 2.695359 ACTGAATCCGTATGCAAACGT 58.305 42.857 0.00 0.00 41.27 3.99
1395 1416 5.403897 AATACTGAATCCGTATGCAAACG 57.596 39.130 0.00 0.00 42.49 3.60
1396 1417 6.687105 GTCAAATACTGAATCCGTATGCAAAC 59.313 38.462 0.00 0.00 35.22 2.93
1397 1418 6.597672 AGTCAAATACTGAATCCGTATGCAAA 59.402 34.615 0.00 0.00 36.93 3.68
1398 1419 6.112734 AGTCAAATACTGAATCCGTATGCAA 58.887 36.000 0.00 0.00 36.93 4.08
1399 1420 5.670485 AGTCAAATACTGAATCCGTATGCA 58.330 37.500 0.00 0.00 36.93 3.96
1400 1421 6.604735 AAGTCAAATACTGAATCCGTATGC 57.395 37.500 0.00 0.00 38.88 3.14
1401 1422 7.065803 ACCAAAGTCAAATACTGAATCCGTATG 59.934 37.037 0.00 0.00 38.88 2.39
1402 1423 7.110155 ACCAAAGTCAAATACTGAATCCGTAT 58.890 34.615 0.00 0.00 38.88 3.06
1403 1424 6.469410 ACCAAAGTCAAATACTGAATCCGTA 58.531 36.000 0.00 0.00 38.88 4.02
1404 1425 5.313712 ACCAAAGTCAAATACTGAATCCGT 58.686 37.500 0.00 0.00 38.88 4.69
1405 1426 5.880054 ACCAAAGTCAAATACTGAATCCG 57.120 39.130 0.00 0.00 38.88 4.18
1406 1427 8.956426 TGAATACCAAAGTCAAATACTGAATCC 58.044 33.333 0.00 0.00 38.88 3.01
1409 1430 9.739276 AGATGAATACCAAAGTCAAATACTGAA 57.261 29.630 0.00 0.00 38.88 3.02
1437 1458 9.755804 CTTCAATATCTTACAGTTAGCATCAGA 57.244 33.333 0.00 0.00 0.00 3.27
1438 1459 8.986847 CCTTCAATATCTTACAGTTAGCATCAG 58.013 37.037 0.00 0.00 0.00 2.90
1439 1460 7.933577 CCCTTCAATATCTTACAGTTAGCATCA 59.066 37.037 0.00 0.00 0.00 3.07
1440 1461 7.389053 CCCCTTCAATATCTTACAGTTAGCATC 59.611 40.741 0.00 0.00 0.00 3.91
1441 1462 7.072454 TCCCCTTCAATATCTTACAGTTAGCAT 59.928 37.037 0.00 0.00 0.00 3.79
1442 1463 6.385759 TCCCCTTCAATATCTTACAGTTAGCA 59.614 38.462 0.00 0.00 0.00 3.49
1443 1464 6.827727 TCCCCTTCAATATCTTACAGTTAGC 58.172 40.000 0.00 0.00 0.00 3.09
1444 1465 8.432805 ACATCCCCTTCAATATCTTACAGTTAG 58.567 37.037 0.00 0.00 0.00 2.34
1445 1466 8.331931 ACATCCCCTTCAATATCTTACAGTTA 57.668 34.615 0.00 0.00 0.00 2.24
1446 1467 7.213178 ACATCCCCTTCAATATCTTACAGTT 57.787 36.000 0.00 0.00 0.00 3.16
1447 1468 6.831664 ACATCCCCTTCAATATCTTACAGT 57.168 37.500 0.00 0.00 0.00 3.55
1448 1469 9.442047 GAATACATCCCCTTCAATATCTTACAG 57.558 37.037 0.00 0.00 0.00 2.74
1449 1470 9.170890 AGAATACATCCCCTTCAATATCTTACA 57.829 33.333 0.00 0.00 0.00 2.41
1452 1473 9.398921 AGTAGAATACATCCCCTTCAATATCTT 57.601 33.333 0.00 0.00 46.26 2.40
1453 1474 8.980832 AGTAGAATACATCCCCTTCAATATCT 57.019 34.615 0.00 0.00 46.26 1.98
1456 1477 9.442062 TGTAAGTAGAATACATCCCCTTCAATA 57.558 33.333 0.00 0.00 46.26 1.90
1457 1478 8.211629 GTGTAAGTAGAATACATCCCCTTCAAT 58.788 37.037 0.00 0.00 46.26 2.57
1458 1479 7.402071 AGTGTAAGTAGAATACATCCCCTTCAA 59.598 37.037 0.00 0.00 46.26 2.69
1459 1480 6.901300 AGTGTAAGTAGAATACATCCCCTTCA 59.099 38.462 0.00 0.00 46.26 3.02
1460 1481 7.210873 CAGTGTAAGTAGAATACATCCCCTTC 58.789 42.308 0.00 0.00 46.26 3.46
1461 1482 6.408206 GCAGTGTAAGTAGAATACATCCCCTT 60.408 42.308 0.00 0.00 46.26 3.95
1462 1483 5.070580 GCAGTGTAAGTAGAATACATCCCCT 59.929 44.000 0.00 0.00 46.26 4.79
1463 1484 5.298347 GCAGTGTAAGTAGAATACATCCCC 58.702 45.833 0.00 0.00 46.26 4.81
1464 1485 4.982916 CGCAGTGTAAGTAGAATACATCCC 59.017 45.833 0.00 0.00 46.26 3.85
1465 1486 5.828747 TCGCAGTGTAAGTAGAATACATCC 58.171 41.667 0.00 0.00 46.26 3.51
1466 1487 7.751047 TTTCGCAGTGTAAGTAGAATACATC 57.249 36.000 0.00 0.00 46.26 3.06
1467 1488 9.982651 ATATTTCGCAGTGTAAGTAGAATACAT 57.017 29.630 0.00 0.00 46.26 2.29
1468 1489 9.459640 GATATTTCGCAGTGTAAGTAGAATACA 57.540 33.333 0.00 0.00 46.26 2.29
1469 1490 9.680315 AGATATTTCGCAGTGTAAGTAGAATAC 57.320 33.333 0.00 0.00 43.47 1.89
1470 1491 9.894783 GAGATATTTCGCAGTGTAAGTAGAATA 57.105 33.333 0.00 0.00 0.00 1.75
1471 1492 8.634444 AGAGATATTTCGCAGTGTAAGTAGAAT 58.366 33.333 0.00 0.00 0.00 2.40
1472 1493 7.997482 AGAGATATTTCGCAGTGTAAGTAGAA 58.003 34.615 0.00 0.00 0.00 2.10
1473 1494 7.569639 AGAGATATTTCGCAGTGTAAGTAGA 57.430 36.000 0.00 0.00 0.00 2.59
1474 1495 8.561212 ACTAGAGATATTTCGCAGTGTAAGTAG 58.439 37.037 0.00 0.00 0.00 2.57
1475 1496 8.343366 CACTAGAGATATTTCGCAGTGTAAGTA 58.657 37.037 16.44 0.00 32.12 2.24
1476 1497 7.067129 TCACTAGAGATATTTCGCAGTGTAAGT 59.933 37.037 20.52 3.25 35.03 2.24
1477 1498 7.377397 GTCACTAGAGATATTTCGCAGTGTAAG 59.623 40.741 20.52 5.83 35.03 2.34
1478 1499 7.194278 GTCACTAGAGATATTTCGCAGTGTAA 58.806 38.462 20.52 8.47 35.03 2.41
1479 1500 6.511282 CGTCACTAGAGATATTTCGCAGTGTA 60.511 42.308 20.52 11.36 35.03 2.90
1480 1501 5.583495 GTCACTAGAGATATTTCGCAGTGT 58.417 41.667 20.52 3.79 35.03 3.55
1481 1502 4.672862 CGTCACTAGAGATATTTCGCAGTG 59.327 45.833 17.66 17.66 34.91 3.66
1482 1503 4.335874 ACGTCACTAGAGATATTTCGCAGT 59.664 41.667 0.00 0.00 0.00 4.40
1483 1504 4.849883 ACGTCACTAGAGATATTTCGCAG 58.150 43.478 0.00 0.00 0.00 5.18
1484 1505 4.895224 ACGTCACTAGAGATATTTCGCA 57.105 40.909 0.00 0.00 0.00 5.10
1485 1506 5.554696 GCAAACGTCACTAGAGATATTTCGC 60.555 44.000 0.00 3.17 0.00 4.70
1486 1507 5.744345 AGCAAACGTCACTAGAGATATTTCG 59.256 40.000 0.00 0.00 0.00 3.46
1487 1508 8.695284 CATAGCAAACGTCACTAGAGATATTTC 58.305 37.037 0.00 0.00 0.00 2.17
1488 1509 8.198109 ACATAGCAAACGTCACTAGAGATATTT 58.802 33.333 0.00 0.00 0.00 1.40
1489 1510 7.717568 ACATAGCAAACGTCACTAGAGATATT 58.282 34.615 0.00 0.00 0.00 1.28
1490 1511 7.278461 ACATAGCAAACGTCACTAGAGATAT 57.722 36.000 0.00 0.00 0.00 1.63
1491 1512 6.694877 ACATAGCAAACGTCACTAGAGATA 57.305 37.500 0.00 0.00 0.00 1.98
1492 1513 5.584253 ACATAGCAAACGTCACTAGAGAT 57.416 39.130 0.00 0.00 0.00 2.75
1493 1514 5.386958 AACATAGCAAACGTCACTAGAGA 57.613 39.130 0.00 0.00 0.00 3.10
1494 1515 6.807230 ACTTAACATAGCAAACGTCACTAGAG 59.193 38.462 0.00 0.00 0.00 2.43
1495 1516 6.684686 ACTTAACATAGCAAACGTCACTAGA 58.315 36.000 0.00 0.00 0.00 2.43
1496 1517 6.946229 ACTTAACATAGCAAACGTCACTAG 57.054 37.500 0.00 0.00 0.00 2.57
1497 1518 8.865978 CATTACTTAACATAGCAAACGTCACTA 58.134 33.333 0.00 0.00 0.00 2.74
1498 1519 7.386848 ACATTACTTAACATAGCAAACGTCACT 59.613 33.333 0.00 0.00 0.00 3.41
1499 1520 7.515643 ACATTACTTAACATAGCAAACGTCAC 58.484 34.615 0.00 0.00 0.00 3.67
1500 1521 7.661127 ACATTACTTAACATAGCAAACGTCA 57.339 32.000 0.00 0.00 0.00 4.35
1530 1551 8.149647 ACTGAATCCATATGCAAAAAGACAAAA 58.850 29.630 0.00 0.00 0.00 2.44
1578 1599 9.245962 GTTAGCAGTAGATAAACGAATACATGT 57.754 33.333 2.69 2.69 0.00 3.21
1588 1609 8.468399 AGGTCTTACAGTTAGCAGTAGATAAAC 58.532 37.037 0.00 0.00 0.00 2.01
1597 1618 5.411781 CCTTGTAGGTCTTACAGTTAGCAG 58.588 45.833 0.00 0.00 42.92 4.24
1612 1633 5.041191 AGTAGAATTCATGCCCTTGTAGG 57.959 43.478 8.44 0.00 34.30 3.18
1922 1945 0.865111 TCACTTCGCCACATTTGTCG 59.135 50.000 0.00 0.00 0.00 4.35
1981 2010 3.562557 TGTTTTAGAAGTTCCGGCTTCAC 59.437 43.478 19.93 11.73 45.28 3.18
1990 2019 7.968405 TGTCAAGCTTTTCTGTTTTAGAAGTTC 59.032 33.333 0.00 0.00 45.66 3.01
2081 2110 1.464997 GCCTCGGTCTTTGTCAATGAC 59.535 52.381 18.74 18.74 35.48 3.06
2149 2178 8.208224 TCTCTAAACAAATGTCACTAGTTTGGA 58.792 33.333 8.66 0.00 37.35 3.53
2170 2199 9.330063 CCAATAGTTCAGCAAATGTAATCTCTA 57.670 33.333 0.00 0.00 0.00 2.43
2196 2225 3.428045 CCGTGCCTTGATTCAAAAGATCC 60.428 47.826 0.01 0.00 0.00 3.36
2218 2247 2.143122 TCACAGGCATTTCGACTTGTC 58.857 47.619 0.00 0.00 0.00 3.18
2220 2249 3.837213 ATTCACAGGCATTTCGACTTG 57.163 42.857 0.00 0.00 0.00 3.16
2369 2398 5.694995 TCATTATCAATTCTCCAGGGTTCC 58.305 41.667 0.00 0.00 0.00 3.62
2732 2761 4.405116 AGGATTGATCTTCTCTGACAGC 57.595 45.455 0.00 0.00 0.00 4.40
2750 2779 4.021981 CCAGCATCGTCTACATCAATAGGA 60.022 45.833 0.00 0.00 0.00 2.94
3067 3096 8.899887 TGATGAGAAGATAAAAAGGGGAAAAT 57.100 30.769 0.00 0.00 0.00 1.82
3071 3100 8.752187 CAAAATGATGAGAAGATAAAAAGGGGA 58.248 33.333 0.00 0.00 0.00 4.81
3505 3536 6.092533 ACTTGATTGAGCTTGTTTTGGTTTTG 59.907 34.615 0.00 0.00 0.00 2.44
3599 3630 8.531982 CCCAAGTTAATCTTCCTCGATGATATA 58.468 37.037 0.00 0.00 33.63 0.86
3606 3637 4.530946 AGTTCCCAAGTTAATCTTCCTCGA 59.469 41.667 0.00 0.00 33.63 4.04
3607 3638 4.833390 AGTTCCCAAGTTAATCTTCCTCG 58.167 43.478 0.00 0.00 33.63 4.63
3689 3720 4.829064 TGTCTGCAACATTTAGGACAAC 57.171 40.909 0.00 0.00 31.20 3.32
3760 3791 8.567104 TCAAATGGTCCATCAAAATCATATACG 58.433 33.333 4.39 0.00 0.00 3.06
4050 4082 3.196685 GCAGAAGTAACCCAGATCAGACT 59.803 47.826 0.00 0.00 0.00 3.24
4068 4100 1.737735 CGCAACGTCATCTGGCAGA 60.738 57.895 21.19 21.19 0.00 4.26
4240 4435 7.696981 TCCCCTACACTATAGTAATCTACTGG 58.303 42.308 4.74 0.00 39.81 4.00
4241 4436 9.233649 CTTCCCCTACACTATAGTAATCTACTG 57.766 40.741 4.74 0.00 39.81 2.74
4242 4437 8.392479 CCTTCCCCTACACTATAGTAATCTACT 58.608 40.741 4.74 0.00 42.68 2.57
4262 4457 0.608035 TCATGTCGTTTGGCCTTCCC 60.608 55.000 3.32 0.00 0.00 3.97
4276 4471 3.834231 CCCAATTTCCCTTCAAGTCATGT 59.166 43.478 0.00 0.00 0.00 3.21
4310 4505 5.416271 TCTATGTTACACTTCCAACTCCC 57.584 43.478 0.00 0.00 0.00 4.30
4324 4519 5.664665 TCCCCATGATCCTCATCTATGTTA 58.335 41.667 0.00 0.00 34.28 2.41
4331 4526 5.972327 ATAATCTCCCCATGATCCTCATC 57.028 43.478 0.00 0.00 34.28 2.92
4337 4533 9.917887 AAGAATCAATATAATCTCCCCATGATC 57.082 33.333 0.00 0.00 0.00 2.92
4401 4841 1.683365 GGGCCCTACGGTACAGTCA 60.683 63.158 17.04 0.00 0.00 3.41
4417 4857 2.104170 AGAGAAGTTCGAGCCTTAGGG 58.896 52.381 0.00 0.00 0.00 3.53
4418 4858 2.755655 TCAGAGAAGTTCGAGCCTTAGG 59.244 50.000 0.00 0.00 0.00 2.69
4419 4859 4.647424 ATCAGAGAAGTTCGAGCCTTAG 57.353 45.455 0.00 0.00 0.00 2.18
4420 4860 4.462834 TGAATCAGAGAAGTTCGAGCCTTA 59.537 41.667 0.00 0.00 0.00 2.69
4421 4861 3.259374 TGAATCAGAGAAGTTCGAGCCTT 59.741 43.478 0.00 0.00 0.00 4.35
4463 4911 7.038154 TCTGCAAGTTAAGCTTATGTGTTTT 57.962 32.000 7.08 0.00 35.27 2.43
4541 4989 8.203485 CAGGCCAGCATCCTTTTAATTTATTTA 58.797 33.333 5.01 0.00 0.00 1.40
4545 4993 5.268387 TCAGGCCAGCATCCTTTTAATTTA 58.732 37.500 5.01 0.00 0.00 1.40
4548 4996 3.386932 TCAGGCCAGCATCCTTTTAAT 57.613 42.857 5.01 0.00 0.00 1.40
4579 5029 2.558359 AGTTAGCAGCATCCAAACCAAC 59.442 45.455 0.00 0.00 0.00 3.77
4588 5038 3.012518 ACATCCACAAGTTAGCAGCATC 58.987 45.455 0.00 0.00 0.00 3.91
4705 5155 9.825109 TTGATATCCGTGTACTATTTGAAATCA 57.175 29.630 0.00 0.00 0.00 2.57
4724 5174 7.764901 GGACGGAGGGAGTATTTATTTGATATC 59.235 40.741 0.00 0.00 0.00 1.63
4739 5189 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4740 5190 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4741 5191 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4742 5192 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4743 5193 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4744 5194 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4745 5195 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4746 5196 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4747 5197 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4748 5198 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4749 5199 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4750 5200 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4753 5203 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
4754 5204 8.542497 TGTAGTGTCAAAAACGCTCTTATATT 57.458 30.769 0.00 0.00 45.69 1.28
4755 5205 8.718102 ATGTAGTGTCAAAAACGCTCTTATAT 57.282 30.769 0.00 0.00 45.69 0.86
4756 5206 8.542497 AATGTAGTGTCAAAAACGCTCTTATA 57.458 30.769 0.00 0.00 45.69 0.98
4757 5207 7.435068 AATGTAGTGTCAAAAACGCTCTTAT 57.565 32.000 0.00 0.00 45.69 1.73
4758 5208 6.854496 AATGTAGTGTCAAAAACGCTCTTA 57.146 33.333 0.00 0.00 45.69 2.10
4759 5209 5.751243 AATGTAGTGTCAAAAACGCTCTT 57.249 34.783 0.00 0.00 45.69 2.85
4760 5210 5.989777 ACTAATGTAGTGTCAAAAACGCTCT 59.010 36.000 0.00 0.00 45.69 4.09
4761 5211 6.071463 CACTAATGTAGTGTCAAAAACGCTC 58.929 40.000 7.17 0.00 45.69 5.03
4788 5238 6.536224 CCGTCCCGTAATATAAGAGTGTTTTT 59.464 38.462 0.00 0.00 0.00 1.94
4789 5239 6.044682 CCGTCCCGTAATATAAGAGTGTTTT 58.955 40.000 0.00 0.00 0.00 2.43
4790 5240 5.360714 TCCGTCCCGTAATATAAGAGTGTTT 59.639 40.000 0.00 0.00 0.00 2.83
4791 5241 4.889409 TCCGTCCCGTAATATAAGAGTGTT 59.111 41.667 0.00 0.00 0.00 3.32
4792 5242 4.464008 TCCGTCCCGTAATATAAGAGTGT 58.536 43.478 0.00 0.00 0.00 3.55
4793 5243 4.082895 CCTCCGTCCCGTAATATAAGAGTG 60.083 50.000 0.00 0.00 0.00 3.51
4794 5244 4.077822 CCTCCGTCCCGTAATATAAGAGT 58.922 47.826 0.00 0.00 0.00 3.24
4795 5245 3.442977 CCCTCCGTCCCGTAATATAAGAG 59.557 52.174 0.00 0.00 0.00 2.85
4796 5246 3.074390 TCCCTCCGTCCCGTAATATAAGA 59.926 47.826 0.00 0.00 0.00 2.10
4797 5247 3.424703 TCCCTCCGTCCCGTAATATAAG 58.575 50.000 0.00 0.00 0.00 1.73
4798 5248 3.181429 ACTCCCTCCGTCCCGTAATATAA 60.181 47.826 0.00 0.00 0.00 0.98
4799 5249 2.376518 ACTCCCTCCGTCCCGTAATATA 59.623 50.000 0.00 0.00 0.00 0.86
4800 5250 1.146566 ACTCCCTCCGTCCCGTAATAT 59.853 52.381 0.00 0.00 0.00 1.28
4801 5251 0.552848 ACTCCCTCCGTCCCGTAATA 59.447 55.000 0.00 0.00 0.00 0.98
4802 5252 0.552848 TACTCCCTCCGTCCCGTAAT 59.447 55.000 0.00 0.00 0.00 1.89
4803 5253 0.107017 CTACTCCCTCCGTCCCGTAA 60.107 60.000 0.00 0.00 0.00 3.18
4804 5254 1.528824 CTACTCCCTCCGTCCCGTA 59.471 63.158 0.00 0.00 0.00 4.02
4805 5255 2.274760 CTACTCCCTCCGTCCCGT 59.725 66.667 0.00 0.00 0.00 5.28
4806 5256 3.217743 GCTACTCCCTCCGTCCCG 61.218 72.222 0.00 0.00 0.00 5.14
4807 5257 1.381463 AAGCTACTCCCTCCGTCCC 60.381 63.158 0.00 0.00 0.00 4.46
4808 5258 1.817209 CAAGCTACTCCCTCCGTCC 59.183 63.158 0.00 0.00 0.00 4.79
4809 5259 1.142097 GCAAGCTACTCCCTCCGTC 59.858 63.158 0.00 0.00 0.00 4.79
4810 5260 0.033405 TAGCAAGCTACTCCCTCCGT 60.033 55.000 0.00 0.00 0.00 4.69
4811 5261 1.067821 CTTAGCAAGCTACTCCCTCCG 59.932 57.143 0.40 0.00 0.00 4.63
4812 5262 1.414550 CCTTAGCAAGCTACTCCCTCC 59.585 57.143 0.40 0.00 0.00 4.30
4813 5263 1.414550 CCCTTAGCAAGCTACTCCCTC 59.585 57.143 0.40 0.00 0.00 4.30
4814 5264 1.273896 ACCCTTAGCAAGCTACTCCCT 60.274 52.381 0.40 0.00 0.00 4.20
4815 5265 1.205055 ACCCTTAGCAAGCTACTCCC 58.795 55.000 0.40 0.00 0.00 4.30
4816 5266 2.236395 TGAACCCTTAGCAAGCTACTCC 59.764 50.000 0.40 0.00 0.00 3.85
4817 5267 3.055747 ACTGAACCCTTAGCAAGCTACTC 60.056 47.826 0.40 0.00 0.00 2.59
4818 5268 2.907042 ACTGAACCCTTAGCAAGCTACT 59.093 45.455 0.40 0.00 0.00 2.57
4819 5269 3.263261 GACTGAACCCTTAGCAAGCTAC 58.737 50.000 0.40 0.00 0.00 3.58
4820 5270 2.903784 TGACTGAACCCTTAGCAAGCTA 59.096 45.455 0.00 0.00 0.00 3.32
4821 5271 1.699634 TGACTGAACCCTTAGCAAGCT 59.300 47.619 0.00 0.00 0.00 3.74
5049 5499 3.898123 ACTTCAGCTTTCCACTCTCTACA 59.102 43.478 0.00 0.00 0.00 2.74
5179 5629 1.139853 AGACTGGCAGTTGCTATAGGC 59.860 52.381 22.98 5.31 41.70 3.93
5197 5647 5.307716 TGCAGATATGTATTGATGGTCCAGA 59.692 40.000 0.00 0.00 0.00 3.86
5200 5650 6.656270 TCAATGCAGATATGTATTGATGGTCC 59.344 38.462 24.22 0.00 42.80 4.46
5516 5967 4.583871 AGTTCATCCTAAGCAGTTCCAAG 58.416 43.478 0.00 0.00 0.00 3.61
5530 5981 4.023707 CCATCTGGCGATTAAAGTTCATCC 60.024 45.833 0.00 0.00 0.00 3.51
5555 6006 6.089954 GGCAAAAGACAAATATGCTTCAGTTC 59.910 38.462 0.00 0.00 37.20 3.01
5564 6015 8.712285 AATTCATCTGGCAAAAGACAAATATG 57.288 30.769 0.00 0.00 0.00 1.78
5569 6020 5.302568 AGTGAATTCATCTGGCAAAAGACAA 59.697 36.000 12.12 0.00 0.00 3.18
5703 6154 7.271223 CCTGCTAAACTTGTAATGAATTTGTCG 59.729 37.037 0.00 0.00 0.00 4.35
5899 6350 5.240844 GCTCACTAGTAAACACATGGGTTTT 59.759 40.000 29.80 16.26 41.07 2.43
5903 6354 3.270877 GGCTCACTAGTAAACACATGGG 58.729 50.000 0.00 0.00 0.00 4.00
5942 6393 5.286221 AGTGGTATCCCATTTAGTAGGTGT 58.714 41.667 0.00 0.00 44.35 4.16
5943 6394 5.888982 AGTGGTATCCCATTTAGTAGGTG 57.111 43.478 0.00 0.00 44.35 4.00
5944 6395 5.968167 TGAAGTGGTATCCCATTTAGTAGGT 59.032 40.000 0.00 0.00 44.35 3.08
5946 6397 7.792032 TCTTGAAGTGGTATCCCATTTAGTAG 58.208 38.462 0.00 0.00 44.35 2.57
5947 6398 7.743116 TCTTGAAGTGGTATCCCATTTAGTA 57.257 36.000 0.00 0.00 44.35 1.82
5948 6399 6.636454 TCTTGAAGTGGTATCCCATTTAGT 57.364 37.500 0.00 0.00 44.35 2.24
5997 6448 0.991146 TGGCAAGCAAGTGAGGGATA 59.009 50.000 0.00 0.00 0.00 2.59
6093 6555 1.710809 ACAAGTTGGGGTAGGCTCATT 59.289 47.619 7.96 0.00 0.00 2.57
6178 6640 5.715753 AGCTGCCTGTAGTTTAGTACTTACT 59.284 40.000 0.00 8.09 38.33 2.24
6181 6643 5.485209 AAGCTGCCTGTAGTTTAGTACTT 57.515 39.130 0.00 0.00 38.33 2.24
6216 6678 2.031333 GTCTTTTGAACCAGCAGAGCAG 60.031 50.000 0.00 0.00 0.00 4.24
6218 6680 1.069636 CGTCTTTTGAACCAGCAGAGC 60.070 52.381 0.00 0.00 0.00 4.09
6231 6696 2.031683 CACTGAAGCCGTTTCGTCTTTT 59.968 45.455 0.00 0.00 38.71 2.27
6327 6792 8.526681 CAGAATAAAGATTGCTCGCAAAATTAC 58.473 33.333 8.54 0.00 39.55 1.89
6334 6799 2.945008 CCCAGAATAAAGATTGCTCGCA 59.055 45.455 0.00 0.00 0.00 5.10
6336 6801 3.545703 ACCCCAGAATAAAGATTGCTCG 58.454 45.455 0.00 0.00 0.00 5.03
6393 6858 5.049828 CAGGAAAATGGACAAAAGGACAAC 58.950 41.667 0.00 0.00 0.00 3.32
6418 6883 2.817258 CGTGCCTGGTTCCATCTTTAAA 59.183 45.455 0.00 0.00 0.00 1.52
6456 6921 3.333680 TGGCCCCTACAAATTCTCTTCTT 59.666 43.478 0.00 0.00 0.00 2.52
6470 6935 5.915744 TTTAGCTTTATGTATGGCCCCTA 57.084 39.130 0.00 0.00 0.00 3.53
6473 6938 5.831997 CTGTTTTAGCTTTATGTATGGCCC 58.168 41.667 0.00 0.00 0.00 5.80
6553 7271 1.270550 GATGGAGGGTGTTTGTTGCAG 59.729 52.381 0.00 0.00 0.00 4.41
6562 7280 0.981183 TGCGTTAAGATGGAGGGTGT 59.019 50.000 0.00 0.00 0.00 4.16
6591 7309 1.260544 ATGCAAAGGAGGAACTTGGC 58.739 50.000 0.00 0.00 45.60 4.52
6620 7338 4.397417 AGTTAGCAGGAATGCAACTGATTC 59.603 41.667 17.39 4.75 36.02 2.52
6630 7348 7.630242 TTTATTCAGGAAGTTAGCAGGAATG 57.370 36.000 0.00 0.00 0.00 2.67
6631 7349 8.829373 ATTTTATTCAGGAAGTTAGCAGGAAT 57.171 30.769 0.00 0.00 0.00 3.01
6666 7384 6.495872 AGTTAGGTGAACAGGTCATTACAGTA 59.504 38.462 0.00 0.00 40.86 2.74
6798 7516 8.102047 ACATTCTTCTCAATTCTCTTCTGATGT 58.898 33.333 0.00 0.00 0.00 3.06
6813 7531 6.356556 TGAACTGGAAAGAACATTCTTCTCA 58.643 36.000 7.32 7.97 46.22 3.27
6939 7657 2.358939 CTGGTCAGCAAATCTTTGGC 57.641 50.000 4.93 0.00 38.57 4.52
7171 7889 5.244626 GCTATCATATGCCTGGTCCAAATTT 59.755 40.000 0.00 0.00 0.00 1.82
7184 7902 6.457934 GGTTGTATGATGCTGCTATCATATGC 60.458 42.308 24.18 19.09 46.19 3.14
7222 7940 1.077501 GCAGGCCATGGCTTCAGTA 60.078 57.895 34.70 0.00 41.60 2.74
7636 8454 4.994852 TGACAAGTATTTTCGAACAGAGGG 59.005 41.667 0.00 0.00 0.00 4.30
7637 8455 6.368791 TGATGACAAGTATTTTCGAACAGAGG 59.631 38.462 0.00 0.00 0.00 3.69
7640 8458 8.781067 TTTTGATGACAAGTATTTTCGAACAG 57.219 30.769 0.00 0.00 37.32 3.16
7850 8669 1.196012 GAGGAATTCCACTCCCGAGT 58.804 55.000 26.22 1.77 43.61 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.